Query 006489
Match_columns 643
No_of_seqs 253 out of 2975
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 02:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-105 4E-110 975.9 77.6 582 54-636 58-654 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 2E-100 7E-105 862.3 72.7 569 60-638 13-581 (587)
3 4f4c_A Multidrug resistance pr 100.0 5E-103 2E-107 953.0 55.3 577 57-639 739-1320(1321)
4 4a82_A Cystic fibrosis transme 100.0 1.2E-99 4E-104 855.6 70.0 575 58-635 2-576 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 1.2E-99 4E-104 858.4 66.6 572 55-638 22-593 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 1.3E-96 4E-101 832.3 80.2 568 57-636 12-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 1.3E-96 4E-101 832.2 75.5 569 56-636 11-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 2.3E-96 8E-101 832.3 77.0 577 57-638 6-586 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.4E-94 4.7E-99 876.8 61.6 582 55-637 32-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.1E-88 3.7E-93 825.2 61.4 578 57-638 692-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 9.9E-72 3.4E-76 574.5 29.3 279 357-638 14-292 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.8E-59 6.2E-64 471.5 31.9 239 395-635 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 9.7E-59 3.3E-63 469.8 30.4 241 395-637 16-256 (260)
14 2ixe_A Antigen peptide transpo 100.0 9.1E-58 3.1E-62 465.1 29.2 242 395-637 15-259 (271)
15 1mv5_A LMRA, multidrug resista 100.0 8.5E-59 2.9E-63 466.2 21.1 237 397-636 2-239 (243)
16 3gd7_A Fusion complex of cysti 100.0 1.2E-55 4.2E-60 468.5 28.0 233 393-629 16-249 (390)
17 2cbz_A Multidrug resistance-as 100.0 2.7E-55 9.3E-60 438.6 25.0 227 396-638 3-232 (237)
18 2pze_A Cystic fibrosis transme 100.0 7.5E-55 2.6E-59 433.3 27.0 222 395-632 5-227 (229)
19 3tui_C Methionine import ATP-b 100.0 5.4E-52 1.9E-56 434.3 25.4 225 395-630 23-261 (366)
20 3gfo_A Cobalt import ATP-bindi 100.0 4.6E-52 1.6E-56 422.7 21.8 218 396-626 7-236 (275)
21 3tif_A Uncharacterized ABC tra 100.0 3.3E-52 1.1E-56 415.7 20.3 216 397-622 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 5.4E-51 1.8E-55 408.5 25.2 220 396-624 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 2.9E-51 9.8E-56 420.1 23.2 216 395-631 39-255 (290)
24 4g1u_C Hemin import ATP-bindin 100.0 1.4E-50 4.9E-55 410.7 23.2 215 396-624 11-238 (266)
25 2olj_A Amino acid ABC transpor 100.0 1.6E-50 5.6E-55 409.0 23.3 215 396-624 24-249 (263)
26 1vpl_A ABC transporter, ATP-bi 100.0 3.3E-50 1.1E-54 405.4 25.0 214 395-623 14-235 (256)
27 2yz2_A Putative ABC transporte 100.0 8.2E-50 2.8E-54 405.9 24.5 214 397-624 3-228 (266)
28 3fvq_A Fe(3+) IONS import ATP- 100.0 5.1E-50 1.7E-54 419.4 23.5 221 396-630 4-236 (359)
29 1b0u_A Histidine permease; ABC 100.0 5.7E-50 2E-54 405.9 23.0 215 396-624 6-243 (262)
30 2pcj_A ABC transporter, lipopr 100.0 3.3E-50 1.1E-54 398.5 20.7 209 396-618 4-223 (224)
31 3rlf_A Maltose/maltodextrin im 100.0 1E-49 3.5E-54 419.8 23.8 218 396-629 3-230 (381)
32 1g6h_A High-affinity branched- 100.0 1.4E-49 4.6E-54 402.5 23.3 211 396-620 7-239 (257)
33 2qi9_C Vitamin B12 import ATP- 100.0 2.8E-49 9.5E-54 397.0 22.9 209 396-623 4-222 (249)
34 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-49 4.1E-54 406.4 20.0 215 396-624 21-253 (279)
35 2onk_A Molybdate/tungstate ABC 100.0 3E-49 1E-53 394.9 22.2 209 397-625 2-218 (240)
36 2yyz_A Sugar ABC transporter, 100.0 6E-49 2.1E-53 412.7 25.1 214 396-625 3-225 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 4.9E-49 1.7E-53 412.4 23.7 215 395-624 13-236 (355)
38 2it1_A 362AA long hypothetical 100.0 4.3E-49 1.5E-53 414.3 23.1 214 396-625 3-225 (362)
39 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-48 3.8E-53 409.5 23.4 211 397-624 2-218 (348)
40 1oxx_K GLCV, glucose, ABC tran 100.0 5.6E-49 1.9E-53 413.4 21.2 215 396-624 3-231 (353)
41 1v43_A Sugar-binding transport 100.0 1.3E-48 4.6E-53 412.0 24.2 213 396-624 11-232 (372)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 7.3E-49 2.5E-53 395.5 19.8 210 397-620 4-230 (250)
43 1g29_1 MALK, maltose transport 100.0 2.2E-48 7.4E-53 411.3 21.7 213 396-624 3-230 (372)
44 2zu0_C Probable ATP-dependent 100.0 1.5E-47 5.2E-52 389.2 23.6 213 396-622 20-253 (267)
45 2nq2_C Hypothetical ABC transp 100.0 1.1E-47 3.9E-52 386.8 20.2 202 396-624 4-218 (253)
46 2pjz_A Hypothetical protein ST 100.0 1E-47 3.5E-52 388.5 19.4 209 397-624 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 2.1E-46 7.1E-51 367.2 14.7 197 396-613 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 1.5E-44 5.1E-49 370.7 -18.7 239 328-636 36-276 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 7E-38 2.4E-42 348.0 15.3 200 396-623 287-493 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 9.8E-38 3.4E-42 350.3 16.3 200 396-623 357-563 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 2.7E-37 9.2E-42 342.4 17.3 201 396-623 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 1.4E-36 4.6E-41 351.7 18.4 199 396-617 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 6.5E-36 2.2E-40 334.8 14.9 199 400-624 350-560 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 3.7E-36 1.3E-40 337.5 12.8 197 396-610 83-304 (607)
55 2iw3_A Elongation factor 3A; a 100.0 3.8E-34 1.3E-38 331.2 27.7 197 395-623 434-635 (986)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 5E-36 1.7E-40 333.1 11.1 196 397-610 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-35 7.3E-40 338.4 13.8 205 412-628 335-645 (670)
58 3ux8_A Excinuclease ABC, A sub 100.0 4.5E-35 1.5E-39 335.7 14.3 206 412-626 31-301 (670)
59 3pih_A Uvrabc system protein A 100.0 2E-34 6.9E-39 333.6 18.2 218 396-632 589-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.8E-33 6.3E-38 315.0 14.8 195 401-611 82-298 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-33 4.7E-38 312.7 10.9 192 401-611 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-32 3.8E-37 316.5 14.0 215 395-628 501-832 (842)
63 4aby_A DNA repair protein RECN 100.0 6.4E-32 2.2E-36 292.9 15.4 201 414-616 50-381 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 1.1E-31 3.6E-36 308.3 17.6 213 396-629 629-948 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.7E-35 5.8E-40 321.6 -14.1 192 396-623 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 4.9E-31 1.7E-35 303.9 18.1 217 395-632 646-969 (993)
67 1e69_A Chromosome segregation 100.0 8.6E-29 2.9E-33 258.8 15.1 202 417-620 17-310 (322)
68 3b85_A Phosphate starvation-in 99.9 2.3E-30 8E-35 252.5 -4.9 152 412-611 13-171 (208)
69 1z6g_A Guanylate kinase; struc 99.9 2.1E-30 7.3E-35 255.6 -10.1 166 413-609 11-193 (218)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.3E-31 1.5E-35 276.1 -17.7 206 331-611 75-291 (330)
71 4gp7_A Metallophosphoesterase; 99.9 1.8E-27 6E-32 225.6 2.9 149 417-604 1-168 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-25 4.1E-30 238.5 15.6 82 533-614 276-364 (365)
73 1ye8_A Protein THEP1, hypothet 99.9 1.2E-27 4.1E-32 227.9 -1.3 147 427-614 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 1.3E-27 4.5E-32 258.2 -8.4 195 395-623 130-344 (438)
75 1tq4_A IIGP1, interferon-induc 99.9 1.7E-26 5.7E-31 246.5 -4.6 168 412-605 36-248 (413)
76 2vf7_A UVRA2, excinuclease ABC 99.9 9.5E-24 3.3E-28 242.6 12.8 95 530-624 373-476 (842)
77 3aez_A Pantothenate kinase; tr 99.9 9.1E-26 3.1E-30 233.7 -9.0 175 394-610 41-245 (312)
78 2f1r_A Molybdopterin-guanine d 99.9 1.8E-25 6.3E-30 210.7 -6.7 111 426-558 3-125 (171)
79 3b9q_A Chloroplast SRP recepto 99.9 1.5E-24 5.2E-29 223.4 -0.8 174 416-612 91-284 (302)
80 2eyu_A Twitching motility prot 99.9 4.9E-26 1.7E-30 229.9 -13.4 183 397-596 6-241 (261)
81 3sop_A Neuronal-specific septi 99.9 6.3E-25 2.2E-29 222.9 -5.4 148 427-599 4-154 (270)
82 2ewv_A Twitching motility prot 99.9 5.9E-26 2E-30 241.1 -15.1 175 413-597 126-353 (372)
83 2o5v_A DNA replication and rep 99.9 2.8E-22 9.6E-27 210.7 12.7 81 536-621 265-354 (359)
84 2og2_A Putative signal recogni 99.9 1.4E-23 4.8E-28 220.1 0.1 172 417-611 149-340 (359)
85 1lvg_A Guanylate kinase, GMP k 99.9 6.1E-25 2.1E-29 213.2 -11.6 168 423-623 2-183 (198)
86 1znw_A Guanylate kinase, GMP k 99.9 3.7E-24 1.3E-28 209.2 -7.1 170 411-609 8-203 (207)
87 2i3b_A HCR-ntpase, human cance 99.8 9.5E-24 3.3E-28 202.6 -4.9 172 425-633 1-182 (189)
88 2obl_A ESCN; ATPase, hydrolase 99.8 8.6E-23 3E-27 214.1 -0.5 193 396-621 45-253 (347)
89 3pih_A Uvrabc system protein A 99.8 6.9E-22 2.4E-26 229.0 2.5 161 442-624 385-561 (916)
90 1cr0_A DNA primase/helicase; R 99.8 3.1E-21 1E-25 199.2 7.0 181 413-612 23-237 (296)
91 3asz_A Uridine kinase; cytidin 99.8 4.1E-23 1.4E-27 202.2 -8.0 145 422-595 3-161 (211)
92 2gza_A Type IV secretion syste 99.8 3.2E-25 1.1E-29 234.9 -25.2 224 319-550 51-301 (361)
93 1lw7_A Transcriptional regulat 99.8 1.9E-22 6.6E-27 214.4 -5.6 148 414-564 157-329 (365)
94 1tf7_A KAIC; homohexamer, hexa 99.8 2.1E-22 7.3E-27 224.1 -5.9 166 412-610 25-210 (525)
95 4ad8_A DNA repair protein RECN 99.8 8.5E-20 2.9E-24 202.8 14.2 76 535-610 395-473 (517)
96 2o8b_B DNA mismatch repair pro 99.8 4.8E-20 1.7E-24 217.3 10.8 170 395-618 749-937 (1022)
97 3qkt_A DNA double-strand break 99.8 6.1E-19 2.1E-23 185.4 17.3 78 534-611 246-332 (339)
98 2r6f_A Excinuclease ABC subuni 99.8 5.5E-20 1.9E-24 211.5 9.9 153 449-624 432-601 (972)
99 2jeo_A Uridine-cytidine kinase 99.8 4.8E-21 1.6E-25 192.2 -0.6 168 411-623 11-187 (245)
100 1ewq_A DNA mismatch repair pro 99.8 1.8E-19 6.3E-24 206.2 8.4 147 394-601 548-704 (765)
101 1tf7_A KAIC; homohexamer, hexa 99.8 2.3E-19 7.9E-24 199.7 8.8 153 419-611 275-444 (525)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.8E-19 2.7E-23 161.1 10.6 88 525-612 41-142 (148)
103 3thx_A DNA mismatch repair pro 99.8 1.7E-18 5.9E-23 201.6 15.8 167 395-621 630-811 (934)
104 2ygr_A Uvrabc system protein A 99.8 1.4E-18 4.7E-23 200.7 14.4 137 483-624 465-618 (993)
105 1pzn_A RAD51, DNA repair and r 99.8 2.3E-20 7.8E-25 196.6 -0.4 167 413-622 118-314 (349)
106 1w1w_A Structural maintenance 99.8 1.2E-18 4.3E-23 189.1 13.1 73 536-608 333-410 (430)
107 4a74_A DNA repair and recombin 99.7 6.4E-19 2.2E-23 174.3 6.0 147 421-610 21-200 (231)
108 1pui_A ENGB, probable GTP-bind 99.7 4.2E-20 1.4E-24 180.2 -3.4 169 397-583 4-197 (210)
109 2ehv_A Hypothetical protein PH 99.7 8.5E-20 2.9E-24 183.1 -2.1 181 397-609 7-207 (251)
110 3szr_A Interferon-induced GTP- 99.7 1.8E-20 6.1E-25 211.3 -8.0 190 396-622 10-236 (608)
111 3jvv_A Twitching mobility prot 99.7 5.1E-19 1.7E-23 186.0 3.4 147 400-610 92-246 (356)
112 1odf_A YGR205W, hypothetical 3 99.7 2E-20 7E-25 191.5 -7.8 131 423-571 29-169 (290)
113 2qag_C Septin-7; cell cycle, c 99.7 2.8E-19 9.5E-24 191.5 -1.3 166 395-598 10-180 (418)
114 1rj9_A FTSY, signal recognitio 99.7 1.9E-18 6.5E-23 178.0 3.8 150 424-598 101-261 (304)
115 3kta_B Chromosome segregation 99.7 2.2E-17 7.5E-22 155.4 10.8 80 534-613 62-147 (173)
116 2qnr_A Septin-2, protein NEDD5 99.7 8.5E-19 2.9E-23 180.9 -2.7 163 400-597 2-169 (301)
117 2w0m_A SSO2452; RECA, SSPF, un 99.7 5.8E-17 2E-21 160.3 7.8 165 412-610 9-192 (235)
118 1s96_A Guanylate kinase, GMP k 99.7 5.5E-18 1.9E-22 166.4 0.1 141 421-623 12-160 (219)
119 3thx_B DNA mismatch repair pro 99.7 5.9E-17 2E-21 188.2 7.3 160 395-604 639-805 (918)
120 3c8u_A Fructokinase; YP_612366 99.7 5E-20 1.7E-24 180.0 -16.0 119 422-564 19-140 (208)
121 2qag_B Septin-6, protein NEDD5 99.6 1.6E-17 5.4E-22 177.0 1.7 180 396-594 16-218 (427)
122 1nij_A Hypothetical protein YJ 99.6 5.2E-18 1.8E-22 176.5 -5.0 150 426-596 5-190 (318)
123 1nlf_A Regulatory protein REPA 99.6 5.9E-16 2E-20 158.1 9.5 151 421-598 26-184 (279)
124 2cvh_A DNA repair and recombin 99.6 1.3E-15 4.3E-20 149.4 10.9 151 413-610 7-185 (220)
125 1zp6_A Hypothetical protein AT 99.6 1.3E-17 4.5E-22 160.1 -3.9 161 421-604 5-169 (191)
126 1wb9_A DNA mismatch repair pro 99.6 2.5E-16 8.5E-21 181.4 4.1 167 395-616 576-751 (800)
127 1n0w_A DNA repair protein RAD5 99.6 3.4E-15 1.2E-19 148.7 8.2 146 421-610 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.5 5.2E-17 1.8E-21 170.0 -9.0 180 397-583 30-259 (337)
129 2yhs_A FTSY, cell division pro 99.5 1E-15 3.5E-20 165.0 -0.6 156 416-594 284-448 (503)
130 3auy_A DNA double-strand break 99.5 7.5E-14 2.6E-18 148.3 10.1 74 535-608 279-359 (371)
131 1p9r_A General secretion pathw 99.4 1.7E-16 5.9E-21 170.0 -12.7 129 414-559 158-314 (418)
132 2bdt_A BH3686; alpha-beta prot 99.4 1.1E-17 3.6E-22 160.7 -20.2 165 425-621 2-182 (189)
133 2rcn_A Probable GTPase ENGC; Y 99.4 1E-14 3.4E-19 152.4 -0.1 123 413-552 204-329 (358)
134 1sxj_E Activator 1 40 kDa subu 99.4 5.1E-14 1.7E-18 148.6 5.2 138 427-598 38-177 (354)
135 2oap_1 GSPE-2, type II secreti 99.4 3.3E-16 1.1E-20 172.2 -12.1 175 412-602 247-458 (511)
136 1htw_A HI0065; nucleotide-bind 99.4 5.2E-15 1.8E-19 137.4 -2.5 87 400-495 11-97 (158)
137 3lda_A DNA repair protein RAD5 99.4 1.7E-13 5.7E-18 146.0 8.7 147 421-611 174-364 (400)
138 2bbw_A Adenylate kinase 4, AK4 99.4 5.4E-15 1.9E-19 148.0 -2.6 169 424-609 26-218 (246)
139 3e70_C DPA, signal recognition 99.4 9.4E-14 3.2E-18 144.2 5.8 166 421-613 125-307 (328)
140 2kjq_A DNAA-related protein; s 99.3 7.4E-13 2.5E-17 121.7 6.0 91 414-594 30-124 (149)
141 2yv5_A YJEQ protein; hydrolase 99.3 1.3E-13 4.5E-18 142.0 -0.5 116 420-549 160-300 (302)
142 2x8a_A Nuclear valosin-contain 99.3 6.5E-15 2.2E-19 149.7 -11.4 143 413-579 34-190 (274)
143 3lnc_A Guanylate kinase, GMP k 99.3 4.4E-15 1.5E-19 147.2 -12.5 147 412-582 14-176 (231)
144 3ec2_A DNA replication protein 99.3 4.1E-12 1.4E-16 120.5 7.8 111 419-596 32-144 (180)
145 1cke_A CK, MSSA, protein (cyti 99.2 9.5E-14 3.2E-18 136.9 -6.0 129 424-565 4-151 (227)
146 1udx_A The GTP-binding protein 99.2 1.2E-12 4.3E-17 139.9 0.7 154 415-593 147-306 (416)
147 3tr0_A Guanylate kinase, GMP k 99.1 1.6E-11 5.4E-16 118.8 4.4 154 419-581 1-186 (205)
148 1u0l_A Probable GTPase ENGC; p 99.1 6E-12 2E-16 129.6 1.5 104 420-524 164-290 (301)
149 1sq5_A Pantothenate kinase; P- 99.1 1E-12 3.4E-17 136.0 -5.6 139 395-569 36-199 (308)
150 1ls1_A Signal recognition part 99.1 4E-11 1.4E-15 122.9 6.4 142 397-592 77-219 (295)
151 4e22_A Cytidylate kinase; P-lo 99.1 5.7E-12 2E-16 126.4 -1.3 109 414-533 19-145 (252)
152 1vma_A Cell division protein F 99.1 1.1E-10 3.8E-15 119.9 7.9 98 418-565 97-197 (306)
153 2px0_A Flagellar biosynthesis 99.1 1.5E-10 5.1E-15 118.6 7.9 138 423-614 103-246 (296)
154 3a00_A Guanylate kinase, GMP k 99.1 4.2E-11 1.5E-15 114.2 3.4 128 425-562 1-169 (186)
155 1t9h_A YLOQ, probable GTPase E 99.1 1.5E-11 5.1E-16 126.1 -0.4 97 420-518 168-288 (307)
156 3euj_A Chromosome partition pr 99.0 4E-11 1.4E-15 129.8 2.7 64 398-467 8-71 (483)
157 3ney_A 55 kDa erythrocyte memb 99.0 3.8E-11 1.3E-15 114.9 0.5 84 419-512 13-109 (197)
158 1in4_A RUVB, holliday junction 99.0 2.6E-13 8.8E-18 142.1 -18.0 157 397-582 19-192 (334)
159 1iy2_A ATP-dependent metallopr 99.0 1.4E-12 4.9E-17 132.8 -12.0 139 398-565 51-196 (278)
160 1ixz_A ATP-dependent metallopr 98.9 2E-12 6.8E-17 129.8 -13.2 140 397-565 26-172 (254)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 6.6E-12 2.2E-16 133.0 -10.6 169 421-618 16-208 (392)
162 1oix_A RAS-related protein RAB 98.9 1.4E-10 4.9E-15 110.9 -0.5 141 427-581 31-188 (191)
163 2dr3_A UPF0273 protein PH0284; 98.9 5.8E-09 2E-13 103.4 11.2 167 413-609 10-196 (247)
164 2zr9_A Protein RECA, recombina 98.9 4.3E-09 1.5E-13 110.2 10.7 143 421-617 57-237 (349)
165 2ius_A DNA translocase FTSK; n 98.9 7.4E-11 2.5E-15 128.7 -3.0 161 417-596 159-343 (512)
166 2r6a_A DNAB helicase, replicat 98.9 4.3E-09 1.5E-13 114.6 10.2 177 413-612 191-401 (454)
167 1qhl_A Protein (cell division 98.9 6.7E-11 2.3E-15 116.0 -4.4 75 396-481 9-91 (227)
168 1kgd_A CASK, peripheral plasma 98.8 2.2E-10 7.5E-15 108.6 -0.8 82 423-512 3-95 (180)
169 3k1j_A LON protease, ATP-depen 98.8 1.2E-10 4E-15 131.6 -3.7 157 412-581 47-227 (604)
170 2dy1_A Elongation factor G; tr 98.8 1.2E-09 4.3E-14 124.2 4.3 132 419-597 3-138 (665)
171 2qt1_A Nicotinamide riboside k 98.7 1E-09 3.5E-14 106.3 -0.1 52 420-497 16-67 (207)
172 1svm_A Large T antigen; AAA+ f 98.7 8.3E-11 2.8E-15 124.1 -8.6 135 413-565 157-312 (377)
173 2f9l_A RAB11B, member RAS onco 98.7 6.7E-09 2.3E-13 99.7 3.4 137 427-582 7-165 (199)
174 3tau_A Guanylate kinase, GMP k 98.7 1.9E-09 6.5E-14 104.7 -1.0 82 423-512 6-98 (208)
175 3t34_A Dynamin-related protein 98.6 2.7E-08 9.2E-13 105.0 4.4 46 413-461 25-72 (360)
176 2ce7_A Cell division protein F 98.6 8.6E-08 2.9E-12 104.1 8.2 114 413-598 39-167 (476)
177 3cr8_A Sulfate adenylyltranfer 98.5 5.4E-09 1.9E-13 115.6 -1.7 89 421-514 365-468 (552)
178 3kta_A Chromosome segregation 98.5 6.5E-09 2.2E-13 98.3 -1.1 100 416-517 18-137 (182)
179 2j41_A Guanylate kinase; GMP, 98.5 9.5E-09 3.3E-13 99.1 -0.1 84 420-511 1-95 (207)
180 3nwj_A ATSK2; P loop, shikimat 98.5 9E-09 3.1E-13 102.5 -0.4 52 396-449 17-72 (250)
181 2qtf_A Protein HFLX, GTP-bindi 98.5 2.8E-08 9.6E-13 104.6 2.0 140 427-583 181-352 (364)
182 3uie_A Adenylyl-sulfate kinase 98.5 5.2E-09 1.8E-13 100.8 -4.2 52 412-464 12-65 (200)
183 4eun_A Thermoresistant glucoki 98.5 2.2E-08 7.5E-13 96.4 0.2 61 419-484 23-83 (200)
184 3vaa_A Shikimate kinase, SK; s 98.4 8E-08 2.7E-12 92.3 3.6 45 405-449 5-49 (199)
185 1zu4_A FTSY; GTPase, signal re 98.4 3.4E-08 1.2E-12 102.0 0.7 68 415-482 95-172 (320)
186 2dhr_A FTSH; AAA+ protein, hex 98.4 5.7E-09 2E-13 114.0 -5.6 140 398-566 42-188 (499)
187 1jjv_A Dephospho-COA kinase; P 98.4 1.6E-07 5.6E-12 90.5 3.8 69 538-609 61-132 (206)
188 3tqc_A Pantothenate kinase; bi 98.3 2.6E-08 8.7E-13 102.7 -4.7 123 413-569 74-211 (321)
189 3ice_A Transcription terminati 98.3 1.7E-07 5.8E-12 97.4 1.4 54 394-449 131-198 (422)
190 2e87_A Hypothetical protein PH 98.2 1.5E-06 5E-11 91.5 8.3 61 535-596 230-293 (357)
191 2z43_A DNA repair and recombin 98.2 7.1E-07 2.4E-11 92.6 5.6 29 421-449 103-131 (324)
192 3hr8_A Protein RECA; alpha and 98.2 6.5E-06 2.2E-10 85.8 12.8 59 421-482 57-116 (356)
193 2xau_A PRE-mRNA-splicing facto 98.2 1.3E-06 4.4E-11 101.0 8.0 64 536-599 190-256 (773)
194 2ffh_A Protein (FFH); SRP54, s 98.2 2E-06 6.8E-11 91.9 8.5 163 397-593 77-246 (425)
195 4a1f_A DNAB helicase, replicat 98.2 1.3E-06 4.6E-11 90.4 6.6 105 414-568 35-141 (338)
196 2vp4_A Deoxynucleoside kinase; 98.2 6.9E-08 2.4E-12 95.1 -3.7 65 418-486 13-87 (230)
197 2eyu_A Twitching motility prot 98.1 6.5E-07 2.2E-11 89.8 2.8 59 544-608 88-146 (261)
198 3m6a_A ATP-dependent protease 98.0 1.2E-06 4E-11 97.4 1.3 47 413-460 97-143 (543)
199 1uf9_A TT1252 protein; P-loop, 98.0 5.2E-08 1.8E-12 93.5 -8.6 31 425-460 8-38 (203)
200 1rz3_A Hypothetical protein rb 98.0 1.3E-06 4.5E-11 83.9 1.3 48 421-468 18-65 (201)
201 3kl4_A SRP54, signal recogniti 98.0 6.1E-06 2.1E-10 88.2 6.3 40 424-463 96-135 (433)
202 1knq_A Gluconate kinase; ALFA/ 97.9 1.7E-06 5.9E-11 80.9 1.3 38 423-464 6-43 (175)
203 1fnn_A CDC6P, cell division co 97.9 3.1E-05 1.1E-09 81.8 10.8 45 553-598 124-172 (389)
204 1v5w_A DMC1, meiotic recombina 97.8 2.9E-05 9.9E-10 81.0 8.7 28 421-448 118-145 (343)
205 3b9p_A CG5977-PA, isoform A; A 97.8 5.8E-05 2E-09 76.8 10.5 71 538-608 97-187 (297)
206 3bh0_A DNAB-like replicative h 97.8 2E-05 6.7E-10 81.3 6.9 36 413-448 56-91 (315)
207 2pez_A Bifunctional 3'-phospho 97.8 2.1E-06 7.2E-11 80.7 -1.1 40 423-463 3-44 (179)
208 3lxx_A GTPase IMAP family memb 97.8 0.00013 4.3E-09 71.8 11.4 28 427-454 31-58 (239)
209 1ega_A Protein (GTP-binding pr 97.7 1.4E-05 4.7E-10 81.9 4.0 147 424-599 7-163 (301)
210 1ypw_A Transitional endoplasmi 97.7 7.8E-06 2.7E-10 94.9 1.3 32 420-451 233-264 (806)
211 2z4s_A Chromosomal replication 97.7 6E-05 2E-09 81.4 7.9 67 552-618 191-263 (440)
212 1sxj_C Activator 1 40 kDa subu 97.7 8.8E-06 3E-10 84.8 1.3 42 413-454 32-75 (340)
213 3qf4_A ABC transporter, ATP-bi 97.7 0.12 4.2E-06 57.4 36.3 174 126-304 75-253 (587)
214 1f6b_A SAR1; gtpases, N-termin 97.6 1.4E-05 4.6E-10 76.4 1.4 56 403-461 6-69 (198)
215 1lv7_A FTSH; alpha/beta domain 97.6 0.0002 6.9E-09 71.1 10.0 43 414-460 36-78 (257)
216 1mky_A Probable GTP-binding pr 97.6 2.7E-05 9.3E-10 84.1 3.7 70 426-495 181-263 (439)
217 1u94_A RECA protein, recombina 97.6 0.00029 1E-08 73.5 10.9 37 413-450 49-88 (356)
218 4eaq_A DTMP kinase, thymidylat 97.5 2.3E-05 7.8E-10 76.8 2.1 43 415-458 13-58 (229)
219 2p67_A LAO/AO transport system 97.5 1E-05 3.5E-10 84.4 -0.6 52 413-464 44-95 (341)
220 2qby_A CDC6 homolog 1, cell di 97.5 2.1E-05 7.3E-10 82.7 1.9 30 423-452 43-72 (386)
221 2qor_A Guanylate kinase; phosp 97.5 1.4E-05 4.8E-10 76.8 0.4 29 422-450 9-37 (204)
222 1m7g_A Adenylylsulfate kinase; 97.5 1.1E-05 3.9E-10 77.8 -0.4 41 420-460 20-62 (211)
223 1kag_A SKI, shikimate kinase I 97.5 3.9E-05 1.3E-09 71.2 3.1 33 424-460 3-35 (173)
224 3r20_A Cytidylate kinase; stru 97.5 7.3E-06 2.5E-10 80.3 -2.5 71 424-494 8-96 (233)
225 3llm_A ATP-dependent RNA helic 97.4 0.00013 4.4E-09 71.6 5.9 133 421-590 72-213 (235)
226 2www_A Methylmalonic aciduria 97.4 3.3E-05 1.1E-09 80.7 1.4 43 423-465 72-114 (349)
227 1m2o_B GTP-binding protein SAR 97.4 8.4E-05 2.9E-09 70.2 4.1 33 414-447 13-45 (190)
228 1l8q_A Chromosomal replication 97.4 0.00014 4.7E-09 75.0 6.0 28 424-451 36-63 (324)
229 2w58_A DNAI, primosome compone 97.4 0.00017 5.8E-09 68.8 5.9 27 426-452 55-81 (202)
230 2gj8_A MNME, tRNA modification 97.3 0.00011 3.6E-09 68.3 4.0 27 423-449 2-28 (172)
231 4fcw_A Chaperone protein CLPB; 97.3 0.00026 8.9E-09 72.3 6.8 31 426-456 48-78 (311)
232 2jaq_A Deoxyguanosine kinase; 97.3 1.1E-05 3.9E-10 77.0 -3.7 70 427-496 2-87 (205)
233 3bos_A Putative DNA replicatio 97.2 0.00014 4.9E-09 70.9 3.7 28 424-451 51-78 (242)
234 3h4m_A Proteasome-activating n 97.2 0.00061 2.1E-08 68.6 8.5 28 422-449 48-75 (285)
235 2q6t_A DNAB replication FORK h 97.2 0.00062 2.1E-08 73.5 8.8 37 414-450 189-225 (444)
236 1y63_A LMAJ004144AAA protein; 97.2 0.00015 5.2E-09 68.2 3.4 32 417-448 2-33 (184)
237 4dcu_A GTP-binding protein ENG 97.2 0.00037 1.3E-08 75.5 6.7 58 540-599 88-145 (456)
238 2i1q_A DNA repair and recombin 97.1 0.00058 2E-08 70.3 7.3 27 421-447 94-120 (322)
239 1njg_A DNA polymerase III subu 97.1 0.00017 5.8E-09 70.0 2.7 45 553-598 125-169 (250)
240 4a82_A Cystic fibrosis transme 97.1 0.1 3.4E-06 58.1 24.9 100 64-164 4-103 (578)
241 1sxj_D Activator 1 41 kDa subu 97.1 0.00012 4.2E-09 76.1 1.1 43 554-597 133-175 (353)
242 1j8m_F SRP54, signal recogniti 97.0 8E-05 2.8E-09 75.9 -0.4 50 416-466 89-139 (297)
243 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00036 1.2E-08 63.3 3.9 29 417-446 16-44 (149)
244 3cf0_A Transitional endoplasmi 97.0 0.00062 2.1E-08 69.4 6.0 39 420-460 44-82 (301)
245 2yvu_A Probable adenylyl-sulfa 97.0 0.00017 5.9E-09 67.8 1.6 40 421-460 9-49 (186)
246 1ex7_A Guanylate kinase; subst 97.0 0.00022 7.5E-09 67.3 2.2 46 428-475 4-62 (186)
247 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00032 1.1E-08 73.9 3.5 41 421-461 18-69 (396)
248 3n70_A Transport activator; si 96.9 0.0024 8.3E-08 57.3 8.6 29 423-451 22-50 (145)
249 2p5t_B PEZT; postsegregational 96.9 0.0002 6.9E-09 71.1 1.4 41 421-463 28-68 (253)
250 2qag_A Septin-2, protein NEDD5 96.9 7.2E-05 2.5E-09 78.5 -2.1 58 394-460 15-72 (361)
251 2wji_A Ferrous iron transport 96.9 0.0007 2.4E-08 62.1 4.9 25 426-450 4-28 (165)
252 3t61_A Gluconokinase; PSI-biol 96.9 0.00022 7.4E-09 68.1 1.4 32 425-460 18-49 (202)
253 1np6_A Molybdopterin-guanine d 96.9 0.00034 1.2E-08 65.3 2.5 38 425-462 6-46 (174)
254 3lxw_A GTPase IMAP family memb 96.9 0.0033 1.1E-07 62.0 9.7 59 538-597 86-151 (247)
255 1lw7_A Transcriptional regulat 96.9 1.9E-05 6.4E-10 83.2 -7.3 86 536-623 258-355 (365)
256 2wjg_A FEOB, ferrous iron tran 96.8 0.00054 1.8E-08 64.0 3.5 23 426-448 8-30 (188)
257 2b8t_A Thymidine kinase; deoxy 96.8 0.00086 2.9E-08 65.1 4.9 51 554-608 89-150 (223)
258 3b60_A Lipid A export ATP-bind 96.7 1 3.5E-05 49.9 33.5 35 129-163 72-106 (582)
259 2zej_A Dardarin, leucine-rich 96.7 0.00073 2.5E-08 63.2 3.3 26 427-452 4-29 (184)
260 1xp8_A RECA protein, recombina 96.7 0.0027 9.1E-08 66.5 7.8 29 421-449 70-98 (366)
261 3uk6_A RUVB-like 2; hexameric 96.7 0.0044 1.5E-07 64.7 9.4 38 423-460 68-105 (368)
262 3bgw_A DNAB-like replicative h 96.7 0.0019 6.3E-08 69.6 6.6 36 414-449 186-221 (444)
263 3dm5_A SRP54, signal recogniti 96.7 0.0078 2.7E-07 64.2 11.1 35 424-458 99-133 (443)
264 2if2_A Dephospho-COA kinase; a 96.6 0.00087 3E-08 63.9 3.3 21 427-447 3-23 (204)
265 1qhx_A CPT, protein (chloramph 96.6 0.00093 3.2E-08 62.0 3.4 27 424-450 2-28 (178)
266 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0077 2.6E-07 59.4 10.2 27 423-449 37-63 (262)
267 2ewv_A Twitching motility prot 96.6 0.00076 2.6E-08 70.9 2.8 58 544-607 199-256 (372)
268 3ihw_A Centg3; RAS, centaurin, 96.6 0.0018 6.2E-08 60.6 5.0 36 427-462 22-66 (184)
269 3cm0_A Adenylate kinase; ATP-b 96.5 0.00094 3.2E-08 62.5 2.8 27 423-449 2-28 (186)
270 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0035 1.2E-07 63.8 7.2 29 420-448 118-146 (331)
271 3qf4_B Uncharacterized ABC tra 96.5 0.81 2.8E-05 50.9 27.1 36 127-162 82-117 (598)
272 2v1u_A Cell division control p 96.5 0.0028 9.7E-08 66.3 6.6 28 423-450 42-69 (387)
273 4ag6_A VIRB4 ATPase, type IV s 96.5 0.001 3.5E-08 70.5 2.9 58 553-610 261-335 (392)
274 3syl_A Protein CBBX; photosynt 96.5 0.017 5.8E-07 58.5 12.0 26 424-449 66-91 (309)
275 3d8b_A Fidgetin-like protein 1 96.5 0.0077 2.6E-07 62.9 9.5 27 423-449 115-141 (357)
276 2dby_A GTP-binding protein; GD 96.5 0.00068 2.3E-08 71.0 1.4 59 427-517 3-61 (368)
277 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00051 1.8E-08 71.0 0.4 37 413-449 10-48 (359)
278 1gvn_B Zeta; postsegregational 96.4 0.0015 5E-08 66.2 3.6 35 424-460 32-66 (287)
279 2yl4_A ATP-binding cassette SU 96.4 1.6 5.4E-05 48.5 38.5 173 128-305 76-253 (595)
280 1gtv_A TMK, thymidylate kinase 96.4 0.00045 1.5E-08 66.3 -0.5 89 427-535 2-97 (214)
281 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.5E-08 59.9 3.3 24 426-449 2-25 (173)
282 1kht_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 60.6 3.6 27 424-450 2-28 (192)
283 2v54_A DTMP kinase, thymidylat 96.4 0.0019 6.6E-08 61.2 3.9 26 424-449 3-28 (204)
284 3qks_A DNA double-strand break 96.4 0.002 6.7E-08 61.7 3.9 28 418-446 17-44 (203)
285 3t15_A Ribulose bisphosphate c 96.3 0.0049 1.7E-07 62.4 6.9 26 424-449 35-60 (293)
286 1jal_A YCHF protein; nucleotid 96.3 0.0027 9.3E-08 66.1 5.1 36 425-460 2-48 (363)
287 3trf_A Shikimate kinase, SK; a 96.3 0.0021 7.2E-08 60.0 3.5 26 424-449 4-29 (185)
288 1fzq_A ADP-ribosylation factor 96.3 0.0018 6.3E-08 60.2 3.0 24 425-448 16-39 (181)
289 3cmw_A Protein RECA, recombina 96.3 0.014 4.9E-07 71.8 11.5 35 422-456 729-763 (1706)
290 2rhm_A Putative kinase; P-loop 96.2 0.0019 6.6E-08 60.6 2.9 27 423-449 3-29 (193)
291 3lw7_A Adenylate kinase relate 96.2 0.0023 7.9E-08 58.7 3.2 20 426-445 2-21 (179)
292 3iij_A Coilin-interacting nucl 96.2 0.0017 5.8E-08 60.5 2.2 27 423-449 9-35 (180)
293 1q3t_A Cytidylate kinase; nucl 96.2 0.0025 8.6E-08 62.3 3.5 27 422-448 13-39 (236)
294 1ko7_A HPR kinase/phosphatase; 96.2 0.0018 6.2E-08 65.9 2.5 34 413-447 133-166 (314)
295 2wwf_A Thymidilate kinase, put 96.1 0.0027 9.4E-08 60.6 3.4 27 423-449 8-34 (212)
296 2chg_A Replication factor C sm 96.1 0.01 3.5E-07 56.3 7.5 44 553-597 101-144 (226)
297 3zvl_A Bifunctional polynucleo 96.1 0.019 6.5E-07 61.2 10.1 29 421-449 254-282 (416)
298 1vht_A Dephospho-COA kinase; s 96.1 0.0028 9.7E-08 61.0 3.3 32 424-460 3-34 (218)
299 2c95_A Adenylate kinase 1; tra 96.1 0.0028 9.7E-08 59.6 3.2 27 423-449 7-33 (196)
300 1nn5_A Similar to deoxythymidy 96.0 0.0031 1.1E-07 60.2 3.4 28 422-449 6-33 (215)
301 3b5x_A Lipid A export ATP-bind 96.0 2.5 8.6E-05 46.7 39.2 35 129-163 72-106 (582)
302 2plr_A DTMP kinase, probable t 96.0 0.0032 1.1E-07 60.0 3.3 28 424-451 3-30 (213)
303 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.028 9.7E-07 57.6 10.7 27 423-449 43-69 (322)
304 2qp9_X Vacuolar protein sortin 95.9 0.022 7.4E-07 59.3 9.6 27 423-449 82-108 (355)
305 1via_A Shikimate kinase; struc 95.9 0.0033 1.1E-07 58.2 2.9 23 427-449 6-28 (175)
306 2vli_A Antibiotic resistance p 95.9 0.003 1E-07 58.8 2.4 27 423-449 3-29 (183)
307 2ze6_A Isopentenyl transferase 95.9 0.0034 1.2E-07 62.2 3.0 23 427-449 3-25 (253)
308 1ly1_A Polynucleotide kinase; 95.9 0.0041 1.4E-07 57.5 3.3 22 426-447 3-24 (181)
309 3io5_A Recombination and repai 95.9 0.011 3.6E-07 60.1 6.5 24 422-446 26-49 (333)
310 2bwj_A Adenylate kinase 5; pho 95.9 0.0033 1.1E-07 59.3 2.7 28 422-449 9-36 (199)
311 2lkc_A Translation initiation 95.8 0.011 3.7E-07 54.2 6.0 26 423-448 6-31 (178)
312 1tev_A UMP-CMP kinase; ploop, 95.8 0.0044 1.5E-07 58.1 3.2 26 424-449 2-27 (196)
313 3co5_A Putative two-component 95.8 0.014 4.6E-07 52.2 6.2 28 423-450 25-52 (143)
314 2erx_A GTP-binding protein DI- 95.8 0.0085 2.9E-07 54.4 5.0 21 427-447 5-25 (172)
315 1q57_A DNA primase/helicase; d 95.7 0.0045 1.5E-07 67.8 3.5 36 415-450 232-267 (503)
316 3cmu_A Protein RECA, recombina 95.7 0.018 6.1E-07 71.9 9.0 39 412-450 1066-1106(2050)
317 1aky_A Adenylate kinase; ATP:A 95.7 0.0056 1.9E-07 59.0 3.7 27 423-449 2-28 (220)
318 1xjc_A MOBB protein homolog; s 95.7 0.0036 1.2E-07 57.8 2.1 35 426-460 5-42 (169)
319 2cdn_A Adenylate kinase; phosp 95.7 0.0061 2.1E-07 57.8 3.7 27 423-449 18-44 (201)
320 3cbq_A GTP-binding protein REM 95.7 0.0044 1.5E-07 58.5 2.7 22 427-448 25-46 (195)
321 1nks_A Adenylate kinase; therm 95.7 0.0049 1.7E-07 57.6 3.0 24 427-450 3-26 (194)
322 3pfi_A Holliday junction ATP-d 95.6 0.057 1.9E-06 55.4 10.9 24 426-449 56-79 (338)
323 1zd8_A GTP:AMP phosphotransfer 95.6 0.0061 2.1E-07 59.1 3.3 27 423-449 5-31 (227)
324 1z2a_A RAS-related protein RAB 95.6 0.0063 2.1E-07 55.1 3.2 22 427-448 7-28 (168)
325 3cmu_A Protein RECA, recombina 95.5 0.053 1.8E-06 67.7 12.0 39 422-460 380-419 (2050)
326 1z0j_A RAB-22, RAS-related pro 95.5 0.0098 3.4E-07 53.9 4.4 23 427-449 8-30 (170)
327 2iyv_A Shikimate kinase, SK; t 95.5 0.0061 2.1E-07 56.8 3.0 25 425-449 2-26 (184)
328 2z0h_A DTMP kinase, thymidylat 95.5 0.0068 2.3E-07 57.0 3.3 24 427-450 2-25 (197)
329 2ew1_A RAS-related protein RAB 95.5 0.012 4.1E-07 55.8 5.0 22 427-448 28-49 (201)
330 3fb4_A Adenylate kinase; psych 95.5 0.0068 2.3E-07 58.1 3.3 23 427-449 2-24 (216)
331 3q72_A GTP-binding protein RAD 95.5 0.0059 2E-07 55.3 2.6 23 427-449 4-26 (166)
332 1ukz_A Uridylate kinase; trans 95.5 0.0058 2E-07 57.9 2.7 26 424-449 14-39 (203)
333 1e6c_A Shikimate kinase; phosp 95.4 0.0068 2.3E-07 55.7 3.0 24 426-449 3-26 (173)
334 3dl0_A Adenylate kinase; phosp 95.4 0.0062 2.1E-07 58.4 2.8 23 427-449 2-24 (216)
335 1kao_A RAP2A; GTP-binding prot 95.4 0.0074 2.5E-07 54.4 3.2 22 427-448 5-26 (167)
336 2nzj_A GTP-binding protein REM 95.4 0.0077 2.6E-07 55.0 3.4 23 427-449 6-28 (175)
337 1zak_A Adenylate kinase; ATP:A 95.4 0.0063 2.2E-07 58.7 2.9 26 424-449 4-29 (222)
338 3q85_A GTP-binding protein REM 95.4 0.0077 2.6E-07 54.7 3.3 23 427-449 4-26 (169)
339 1zuh_A Shikimate kinase; alpha 95.4 0.0082 2.8E-07 55.0 3.5 25 425-449 7-31 (168)
340 2grj_A Dephospho-COA kinase; T 95.4 0.0077 2.6E-07 56.9 3.3 23 426-448 13-35 (192)
341 2r8r_A Sensor protein; KDPD, P 95.4 0.013 4.6E-07 56.5 4.9 43 551-593 81-125 (228)
342 2pt5_A Shikimate kinase, SK; a 95.4 0.0084 2.9E-07 54.8 3.4 23 427-449 2-24 (168)
343 2ged_A SR-beta, signal recogni 95.4 0.0076 2.6E-07 56.3 3.2 26 424-449 47-72 (193)
344 1ksh_A ARF-like protein 2; sma 95.4 0.015 5.3E-07 53.8 5.3 26 423-448 16-41 (186)
345 2oil_A CATX-8, RAS-related pro 95.4 0.011 3.8E-07 55.2 4.4 22 427-448 27-48 (193)
346 2dyk_A GTP-binding protein; GT 95.4 0.0079 2.7E-07 54.1 3.2 23 427-449 3-25 (161)
347 3iby_A Ferrous iron transport 95.4 0.0074 2.5E-07 59.8 3.2 23 427-449 3-25 (256)
348 1u8z_A RAS-related protein RAL 95.4 0.0079 2.7E-07 54.3 3.2 22 427-448 6-27 (168)
349 2ce2_X GTPase HRAS; signaling 95.4 0.0073 2.5E-07 54.3 2.9 22 427-448 5-26 (166)
350 3u61_B DNA polymerase accessor 95.4 0.064 2.2E-06 54.7 10.4 44 554-597 105-148 (324)
351 1c1y_A RAS-related protein RAP 95.3 0.0081 2.8E-07 54.3 3.2 22 427-448 5-26 (167)
352 3clv_A RAB5 protein, putative; 95.3 0.011 3.7E-07 55.3 4.1 22 427-448 9-30 (208)
353 1z08_A RAS-related protein RAB 95.3 0.0084 2.9E-07 54.4 3.2 22 427-448 8-29 (170)
354 1a7j_A Phosphoribulokinase; tr 95.3 0.0045 1.5E-07 62.6 1.4 26 424-449 4-29 (290)
355 3tlx_A Adenylate kinase 2; str 95.3 0.0083 2.8E-07 58.9 3.3 26 424-449 28-53 (243)
356 3ake_A Cytidylate kinase; CMP 95.3 0.0082 2.8E-07 56.9 3.2 23 427-449 4-26 (208)
357 1hqc_A RUVB; extended AAA-ATPa 95.3 0.045 1.5E-06 55.7 9.0 26 424-449 37-62 (324)
358 3k53_A Ferrous iron transport 95.3 0.0076 2.6E-07 60.2 3.0 24 427-450 5-28 (271)
359 1ek0_A Protein (GTP-binding pr 95.3 0.0086 2.9E-07 54.2 3.2 23 427-449 5-27 (170)
360 1g16_A RAS-related protein SEC 95.3 0.0078 2.7E-07 54.6 2.9 22 427-448 5-26 (170)
361 2pbr_A DTMP kinase, thymidylat 95.3 0.0087 3E-07 56.0 3.3 23 427-449 2-24 (195)
362 2qby_B CDC6 homolog 3, cell di 95.3 0.0035 1.2E-07 65.8 0.5 25 425-449 45-69 (384)
363 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0089 3E-07 54.8 3.2 22 427-448 9-30 (177)
364 1qf9_A UMP/CMP kinase, protein 95.3 0.007 2.4E-07 56.5 2.5 25 425-449 6-30 (194)
365 3t5d_A Septin-7; GTP-binding p 95.3 0.0072 2.4E-07 60.5 2.7 23 427-449 10-32 (274)
366 1ky3_A GTP-binding protein YPT 95.3 0.009 3.1E-07 54.9 3.2 23 427-449 10-32 (182)
367 4b4t_L 26S protease subunit RP 95.2 0.033 1.1E-06 59.4 7.9 30 421-450 211-240 (437)
368 2fn4_A P23, RAS-related protei 95.2 0.0085 2.9E-07 55.0 2.9 22 427-448 11-32 (181)
369 3tw8_B RAS-related protein RAB 95.2 0.0087 3E-07 54.9 2.9 22 427-448 11-32 (181)
370 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.0095 3.3E-07 59.1 3.3 26 424-449 3-28 (260)
371 3t1o_A Gliding protein MGLA; G 95.2 0.01 3.5E-07 55.4 3.4 25 427-451 16-40 (198)
372 1svi_A GTP-binding protein YSX 95.2 0.0085 2.9E-07 56.0 2.8 24 425-448 23-46 (195)
373 2bcg_Y Protein YP2, GTP-bindin 95.2 0.017 5.9E-07 54.6 5.0 22 427-448 10-31 (206)
374 3a8t_A Adenylate isopentenyltr 95.2 0.011 3.7E-07 60.7 3.7 28 423-450 38-65 (339)
375 1r2q_A RAS-related protein RAB 95.2 0.01 3.4E-07 53.8 3.2 22 427-448 8-29 (170)
376 2qmh_A HPR kinase/phosphorylas 95.2 0.014 4.7E-07 55.1 4.1 36 413-449 23-58 (205)
377 1uj2_A Uridine-cytidine kinase 95.1 0.01 3.4E-07 58.6 3.3 24 426-449 23-46 (252)
378 1jr3_A DNA polymerase III subu 95.1 0.003 1E-07 65.9 -0.6 43 554-597 119-161 (373)
379 4dsu_A GTPase KRAS, isoform 2B 95.1 0.011 3.7E-07 54.8 3.2 22 427-448 6-27 (189)
380 3pqc_A Probable GTP-binding pr 95.1 0.0094 3.2E-07 55.5 2.8 24 426-449 24-47 (195)
381 3pxi_A Negative regulator of g 95.1 0.036 1.2E-06 63.8 8.3 23 427-449 523-545 (758)
382 1r8s_A ADP-ribosylation factor 95.1 0.011 3.8E-07 53.3 3.2 21 427-447 2-22 (164)
383 3be4_A Adenylate kinase; malar 95.1 0.011 3.7E-07 56.9 3.2 26 424-449 4-29 (217)
384 3hu3_A Transitional endoplasmi 95.1 0.045 1.5E-06 59.5 8.5 28 422-449 235-262 (489)
385 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4.1E-07 53.9 3.4 22 427-448 8-29 (178)
386 2zan_A Vacuolar protein sortin 95.1 0.058 2E-06 57.9 9.3 27 423-449 165-191 (444)
387 3bc1_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.9 3.2 22 427-448 13-34 (195)
388 1m7b_A RND3/RHOE small GTP-bin 95.0 0.016 5.4E-07 53.8 4.2 22 427-448 9-30 (184)
389 3b1v_A Ferrous iron uptake tra 95.0 0.011 3.8E-07 59.1 3.4 24 426-449 4-27 (272)
390 1upt_A ARL1, ADP-ribosylation 95.0 0.012 4E-07 53.5 3.2 23 425-447 7-29 (171)
391 2cxx_A Probable GTP-binding pr 95.0 0.01 3.5E-07 55.0 2.8 23 427-449 3-25 (190)
392 1wf3_A GTP-binding protein; GT 95.0 0.011 3.9E-07 60.0 3.3 22 427-448 9-30 (301)
393 2g6b_A RAS-related protein RAB 95.0 0.012 4.1E-07 54.0 3.2 23 427-449 12-34 (180)
394 3t5g_A GTP-binding protein RHE 95.0 0.019 6.5E-07 52.8 4.5 21 427-447 8-28 (181)
395 2y8e_A RAB-protein 6, GH09086P 95.0 0.011 3.8E-07 54.1 2.9 22 427-448 16-37 (179)
396 3con_A GTPase NRAS; structural 94.9 0.012 4.2E-07 54.7 3.2 22 427-448 23-44 (190)
397 2f6r_A COA synthase, bifunctio 94.9 0.011 3.6E-07 59.6 2.8 23 425-447 75-97 (281)
398 1z0f_A RAB14, member RAS oncog 94.9 0.013 4.4E-07 53.6 3.2 23 427-449 17-39 (179)
399 2efe_B Small GTP-binding prote 94.9 0.013 4.5E-07 53.8 3.2 23 427-449 14-36 (181)
400 3cmw_A Protein RECA, recombina 94.9 0.071 2.4E-06 65.8 10.2 37 413-450 369-408 (1706)
401 2a9k_A RAS-related protein RAL 94.8 0.014 4.6E-07 53.9 3.2 23 426-448 19-41 (187)
402 4bas_A ADP-ribosylation factor 94.8 0.018 6.1E-07 53.9 3.9 24 425-448 17-40 (199)
403 3iev_A GTP-binding protein ERA 94.8 0.014 4.7E-07 59.5 3.3 24 426-449 11-34 (308)
404 3kkq_A RAS-related protein M-R 94.8 0.015 5E-07 53.7 3.2 22 427-448 20-41 (183)
405 2gf9_A RAS-related protein RAB 94.8 0.015 5E-07 54.2 3.2 22 427-448 24-45 (189)
406 2bme_A RAB4A, RAS-related prot 94.8 0.014 4.6E-07 54.1 2.9 22 427-448 12-33 (186)
407 1z06_A RAS-related protein RAB 94.7 0.016 5.3E-07 54.0 3.2 22 427-448 22-43 (189)
408 2xtp_A GTPase IMAP family memb 94.7 0.014 4.8E-07 57.7 3.1 24 426-449 23-46 (260)
409 4dhe_A Probable GTP-binding pr 94.7 0.0091 3.1E-07 57.2 1.5 25 425-449 29-53 (223)
410 2fg5_A RAB-22B, RAS-related pr 94.7 0.015 5E-07 54.5 2.9 22 427-448 25-46 (192)
411 1vg8_A RAS-related protein RAB 94.7 0.016 5.4E-07 54.7 3.2 23 427-449 10-32 (207)
412 3exa_A TRNA delta(2)-isopenten 94.7 0.017 5.9E-07 58.5 3.6 25 425-449 3-27 (322)
413 2bov_A RAla, RAS-related prote 94.7 0.016 5.4E-07 54.6 3.2 22 427-448 16-37 (206)
414 3d3q_A TRNA delta(2)-isopenten 94.6 0.014 4.9E-07 60.0 2.9 25 426-450 8-32 (340)
415 1sky_E F1-ATPase, F1-ATP synth 94.6 0.008 2.7E-07 64.4 1.0 38 420-457 146-183 (473)
416 2cjw_A GTP-binding protein GEM 94.6 0.017 5.7E-07 54.3 3.2 22 427-448 8-29 (192)
417 1gwn_A RHO-related GTP-binding 94.6 0.023 7.9E-07 54.0 4.2 23 426-448 29-51 (205)
418 1zbd_A Rabphilin-3A; G protein 94.6 0.017 5.9E-07 54.3 3.3 22 427-448 10-31 (203)
419 3oes_A GTPase rhebl1; small GT 94.6 0.015 5.2E-07 54.8 2.9 26 424-449 23-48 (201)
420 3v9p_A DTMP kinase, thymidylat 94.6 0.015 5.3E-07 56.4 3.0 28 423-450 23-50 (227)
421 2gf0_A GTP-binding protein DI- 94.6 0.016 5.3E-07 54.3 2.9 22 426-447 9-30 (199)
422 1ak2_A Adenylate kinase isoenz 94.6 0.02 6.7E-07 55.7 3.7 26 424-449 15-40 (233)
423 3bwd_D RAC-like GTP-binding pr 94.6 0.02 6.7E-07 52.7 3.5 25 424-448 7-31 (182)
424 1e4v_A Adenylate kinase; trans 94.6 0.016 5.4E-07 55.5 3.0 23 427-449 2-24 (214)
425 3tkl_A RAS-related protein RAB 94.6 0.022 7.4E-07 53.1 3.9 23 427-449 18-40 (196)
426 1moz_A ARL1, ADP-ribosylation 94.6 0.011 3.6E-07 54.7 1.7 24 424-447 17-40 (183)
427 1mh1_A RAC1; GTP-binding, GTPa 94.6 0.017 5.9E-07 53.2 3.2 21 427-447 7-27 (186)
428 2il1_A RAB12; G-protein, GDP, 94.6 0.016 5.5E-07 54.2 2.9 22 427-448 28-49 (192)
429 3tqf_A HPR(Ser) kinase; transf 94.6 0.024 8.2E-07 52.2 3.9 34 413-447 5-38 (181)
430 2fv8_A H6, RHO-related GTP-bin 94.6 0.0084 2.9E-07 57.0 0.9 35 414-448 14-48 (207)
431 3vfd_A Spastin; ATPase, microt 94.5 0.11 3.6E-06 54.7 9.6 27 423-449 146-172 (389)
432 2qu8_A Putative nucleolar GTP- 94.5 0.017 5.7E-07 55.8 3.1 23 426-448 30-52 (228)
433 3auy_A DNA double-strand break 94.5 0.02 6.8E-07 60.0 3.9 30 416-446 17-46 (371)
434 2h92_A Cytidylate kinase; ross 94.5 0.015 5.2E-07 55.7 2.7 25 425-449 3-27 (219)
435 1nrj_B SR-beta, signal recogni 94.5 0.018 6E-07 55.0 3.2 24 426-449 13-36 (218)
436 3dz8_A RAS-related protein RAB 94.5 0.016 5.6E-07 54.0 2.9 23 427-449 25-47 (191)
437 2xb4_A Adenylate kinase; ATP-b 94.5 0.018 6.3E-07 55.5 3.3 23 427-449 2-24 (223)
438 2a5j_A RAS-related protein RAB 94.5 0.018 6.2E-07 53.7 3.2 22 427-448 23-44 (191)
439 3llu_A RAS-related GTP-binding 94.5 0.018 6.3E-07 54.0 3.2 26 426-451 21-46 (196)
440 3i8s_A Ferrous iron transport 94.5 0.017 5.9E-07 57.7 3.1 23 427-449 5-27 (274)
441 3tmk_A Thymidylate kinase; pho 94.5 0.019 6.4E-07 55.3 3.2 29 423-451 3-31 (216)
442 3cnl_A YLQF, putative uncharac 94.5 0.019 6.6E-07 57.0 3.4 30 426-455 100-129 (262)
443 1zd9_A ADP-ribosylation factor 94.4 0.02 6.7E-07 53.4 3.2 23 426-448 23-45 (188)
444 4edh_A DTMP kinase, thymidylat 94.4 0.02 6.9E-07 55.0 3.3 29 423-451 4-32 (213)
445 2o52_A RAS-related protein RAB 94.4 0.019 6.4E-07 54.2 3.0 22 427-448 27-48 (200)
446 1zj6_A ADP-ribosylation factor 94.4 0.019 6.5E-07 53.3 3.0 24 424-447 15-38 (187)
447 1jwy_B Dynamin A GTPase domain 94.4 0.018 6.1E-07 58.6 3.0 23 427-449 26-48 (315)
448 2p5s_A RAS and EF-hand domain 94.4 0.02 6.8E-07 53.8 3.2 26 423-448 26-51 (199)
449 3a1s_A Iron(II) transport prot 94.4 0.02 7E-07 56.7 3.4 23 427-449 7-29 (258)
450 3reg_A RHO-like small GTPase; 94.4 0.02 6.8E-07 53.5 3.2 22 427-448 25-46 (194)
451 2atv_A RERG, RAS-like estrogen 94.4 0.02 6.9E-07 53.6 3.2 23 426-448 29-51 (196)
452 1x3s_A RAS-related protein RAB 94.4 0.02 6.9E-07 53.2 3.2 23 426-448 16-38 (195)
453 3cph_A RAS-related protein SEC 94.4 0.02 6.9E-07 54.2 3.2 24 425-448 20-43 (213)
454 2h17_A ADP-ribosylation factor 94.4 0.017 5.8E-07 53.4 2.6 23 426-448 22-44 (181)
455 3def_A T7I23.11 protein; chlor 94.4 0.019 6.6E-07 56.9 3.1 23 427-449 38-60 (262)
456 3lv8_A DTMP kinase, thymidylat 94.3 0.022 7.5E-07 55.6 3.3 27 424-450 26-52 (236)
457 3c5c_A RAS-like protein 12; GD 94.3 0.022 7.5E-07 53.1 3.2 22 427-448 23-44 (187)
458 2aka_B Dynamin-1; fusion prote 94.3 0.018 6.2E-07 58.0 2.8 24 426-449 27-50 (299)
459 2h57_A ADP-ribosylation factor 94.3 0.016 5.4E-07 54.0 2.2 24 426-449 22-45 (190)
460 1h65_A Chloroplast outer envel 94.3 0.02 6.8E-07 57.1 3.0 23 427-449 41-63 (270)
461 3ld9_A DTMP kinase, thymidylat 94.3 0.022 7.7E-07 55.0 3.3 28 423-450 19-46 (223)
462 2iwr_A Centaurin gamma 1; ANK 94.3 0.017 5.9E-07 52.9 2.4 23 426-448 8-30 (178)
463 4tmk_A Protein (thymidylate ki 94.3 0.024 8.2E-07 54.4 3.4 27 424-450 2-28 (213)
464 2f7s_A C25KG, RAS-related prot 94.3 0.024 8.1E-07 54.0 3.4 23 427-449 27-49 (217)
465 2j1l_A RHO-related GTP-binding 94.2 0.022 7.5E-07 54.4 3.1 21 427-447 36-56 (214)
466 2q3h_A RAS homolog gene family 94.2 0.024 8.2E-07 53.2 3.3 25 424-448 19-43 (201)
467 3crm_A TRNA delta(2)-isopenten 94.2 0.021 7.2E-07 58.3 3.0 25 426-450 6-30 (323)
468 2wsm_A Hydrogenase expression/ 94.2 0.022 7.4E-07 54.5 2.9 24 426-449 31-54 (221)
469 2fh5_B SR-beta, signal recogni 94.1 0.024 8.2E-07 53.9 3.2 24 426-449 8-31 (214)
470 2fu5_C RAS-related protein RAB 94.1 0.016 5.5E-07 53.4 1.9 22 427-448 10-31 (183)
471 2gco_A H9, RHO-related GTP-bin 94.1 0.022 7.6E-07 53.7 2.9 22 427-448 27-48 (201)
472 1p5z_B DCK, deoxycytidine kina 94.1 0.015 5.3E-07 57.6 1.8 29 422-450 21-49 (263)
473 1ypw_A Transitional endoplasmi 94.1 0.0026 9.1E-08 73.7 -4.4 45 418-464 504-548 (806)
474 1jbk_A CLPB protein; beta barr 94.1 0.028 9.7E-07 51.8 3.5 28 423-450 41-68 (195)
475 2ocp_A DGK, deoxyguanosine kin 94.1 0.024 8.2E-07 55.4 3.1 27 424-450 1-27 (241)
476 1ltq_A Polynucleotide kinase; 94.0 0.026 8.9E-07 57.0 3.3 31 426-459 3-33 (301)
477 2g3y_A GTP-binding protein GEM 94.0 0.028 9.7E-07 53.8 3.4 24 426-449 38-61 (211)
478 3foz_A TRNA delta(2)-isopenten 94.0 0.025 8.4E-07 57.3 3.0 25 425-449 10-34 (316)
479 2b6h_A ADP-ribosylation factor 94.0 0.023 7.8E-07 53.2 2.6 25 423-447 27-51 (192)
480 3euj_A Chromosome partition pr 93.9 0.093 3.2E-06 56.6 7.5 77 528-608 371-464 (483)
481 2xxa_A Signal recognition part 93.9 0.26 9E-06 52.5 11.0 28 424-451 99-126 (433)
482 3r7w_A Gtpase1, GTP-binding pr 93.9 0.027 9.3E-07 57.3 3.1 26 424-449 2-27 (307)
483 2atx_A Small GTP binding prote 93.9 0.027 9.3E-07 52.5 2.9 22 427-448 20-41 (194)
484 1sxj_B Activator 1 37 kDa subu 93.8 0.066 2.3E-06 54.2 5.8 43 554-597 107-149 (323)
485 3umf_A Adenylate kinase; rossm 93.8 0.019 6.5E-07 55.3 1.6 29 421-449 25-53 (217)
486 2orv_A Thymidine kinase; TP4A 93.7 0.15 5.2E-06 49.2 7.8 51 553-608 89-150 (234)
487 4djt_A GTP-binding nuclear pro 93.7 0.015 5.3E-07 55.4 0.8 22 427-448 13-34 (218)
488 1puj_A YLQF, conserved hypothe 93.6 0.037 1.3E-06 55.6 3.6 30 425-454 120-149 (282)
489 4gzl_A RAS-related C3 botulinu 93.6 0.031 1.1E-06 52.8 2.9 24 424-447 29-52 (204)
490 2hf9_A Probable hydrogenase ni 93.6 0.031 1.1E-06 53.7 2.9 24 426-449 39-62 (226)
491 2hup_A RAS-related protein RAB 93.6 0.032 1.1E-06 52.6 2.9 22 427-448 31-52 (201)
492 2j37_W Signal recognition part 93.6 0.54 1.8E-05 51.0 12.9 26 425-450 101-126 (504)
493 2x77_A ADP-ribosylation factor 93.5 0.022 7.6E-07 52.9 1.7 24 424-447 21-44 (189)
494 3q3j_B RHO-related GTP-binding 93.5 0.037 1.3E-06 52.8 3.2 24 425-448 27-50 (214)
495 3cpj_B GTP-binding protein YPT 93.5 0.038 1.3E-06 53.0 3.2 22 427-448 15-36 (223)
496 1a5t_A Delta prime, HOLB; zinc 93.4 0.15 5E-06 52.4 7.7 24 427-450 26-49 (334)
497 2p65_A Hypothetical protein PF 93.3 0.036 1.2E-06 51.0 2.7 29 423-451 41-69 (187)
498 2yc2_C IFT27, small RAB-relate 93.3 0.019 6.5E-07 54.1 0.8 23 426-448 21-43 (208)
499 2zts_A Putative uncharacterize 93.3 0.054 1.8E-06 52.6 4.0 25 422-446 27-51 (251)
500 3ec1_A YQEH GTPase; atnos1, at 93.3 0.039 1.3E-06 57.7 3.2 25 424-448 161-185 (369)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-105 Score=975.95 Aligned_cols=582 Identities=34% Similarity=0.542 Sum_probs=527.6
Q ss_pred cchhHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCchhHHHHHHHHHH
Q 006489 54 ANVGFGRVLALAKPD-AGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------------ETPEQKAEALAAVRS 119 (643)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-------------~~~~~~~~~~~~~~~ 119 (643)
.++.+.++|+|..++ +..++++++++++..+..++++++++.++|.+.... ............+..
T Consensus 58 ~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1321)
T 4f4c_A 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMN 137 (1321)
T ss_dssp SCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHH
T ss_pred CCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 456788899887665 344446666777776667777788888887653110 000011112233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 120 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEA 199 (643)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~ 199 (643)
+++.++++.++..++.+++.+++..+++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777888899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH
Q 006489 200 LRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 279 (643)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 279 (643)
+..+++++++++++++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 280 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYT 359 (643)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 359 (643)
.++|.+..++..+...+.....++...+..++..+..++++++|++++.+|.+++|.+++++.++..+..|+..++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCC-CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChH
Q 006489 360 VAMKAAGASRRVFQLLDRVSSMPKSGN-QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (643)
Q Consensus 360 ~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 438 (643)
.++++.++++|+.++++.+++.+.... ..+..+.+++|+|+||+|+||++++.++|+|+||+|++||++||||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcH
Confidence 999999999999999988766443221 2222334578999999999998767899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHH
Q 006489 439 STIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDF 518 (643)
Q Consensus 439 STLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~ 518 (643)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||||||+|||||||+||++ +++++++++||+.|++++|
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchhH
Confidence 999999999999999999999999999999999999999999999999999999999987 7999999999999999999
Q ss_pred HHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH
Q 006489 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 598 (643)
Q Consensus 519 i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i 598 (643)
|+.||+||||.|||+|.+||||||||||||||+|+||+||||||||||||+++|+.|+++|+++.++||+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHh
Q 006489 599 QSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 599 ~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
++||+|+||++|+|+|+|||+||++++|.|+++++.|.
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999998774
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-100 Score=862.30 Aligned_cols=569 Identities=26% Similarity=0.420 Sum_probs=522.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (643)
+++++++++++.+++++++.++..++.++.|++++.++|.+..... ...++.+.+.++++.++..++.+++.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--------FSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999999999999999998754322 22233444555566667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006489 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (643)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (643)
++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++++++++.++|+
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 220 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299 (643)
Q Consensus 220 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 006489 300 VVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 379 (643)
..+....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC
Q 006489 380 SMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id 459 (643)
+..+.....+.++..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 325 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 325 AIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp SCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred ccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 543322222222345689999999999864 5689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 460 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
|+|+++++.+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.++++++++.+|+|+||.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 999999999999999999999999999999999999976 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~ 619 (643)
|||||++||||++++|+|+|||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHhcC
Q 006489 620 ELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 620 eL~~~~g~y~~l~~~q~~~ 638 (643)
||+++++.|+++++.|..+
T Consensus 563 el~~~~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 563 ELLEHCKPYREIYESQFGN 581 (587)
T ss_dssp HHHHHCHHHHHHHHHHC--
T ss_pred HHHhCCcHHHHHHHHHhcc
Confidence 9999999999999988654
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-103 Score=953.04 Aligned_cols=577 Identities=35% Similarity=0.557 Sum_probs=500.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+.+++.+.+++++.+++++++.++........++++..+++........... ....+.++++++.++..++.+
T Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 739 NLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLS------QGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTT------THHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888888778888888888888876543321111 112234455566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
++.++....+.++..++|.++|++++++|++||+. +++|+++||+++|++.+++.+...+..++..++.+++++++++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~ 892 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAF 892 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeeh
Confidence 99999999999999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
+++|++++++++++|++++...++.++.++...+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+..
T Consensus 893 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 972 (1321)
T 4f4c_A 893 FYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEA 972 (1321)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777777777777888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGA--LTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (643)
.+.....++...+...+..+..++++++|++++..+..+.+. +++++.+......|+..+...+..+.++..+.+|+.
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~ 1052 (1321)
T 4f4c_A 973 IKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052 (1321)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888888888999999999888766654 444444444445677888888999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC
Q 006489 373 QLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI 452 (643)
Q Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~ 452 (643)
++++.+++.+....+.+.++..|+|+|+||+|+||++++.++|+|+||+|+|||+||||||||||||||+++|+|+|+|+
T Consensus 1053 ~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1053 GMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 99998776554333333445568899999999999876778999999999999999999999999999999999999999
Q ss_pred CCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 006489 453 KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVG 531 (643)
Q Consensus 453 ~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg 531 (643)
+|+|+|||+|++++++++||++|+||||||+||+|||||||+||. |.+++|+++++||+.|++++||++||+||||+||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999994 4478999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
|+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++.+++||+|+|||||+|+++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcChhHHhhcCChHHHHHHHHhcCC
Q 006489 612 IVESGTHEELLSKGGVYTALVKRQLQEP 639 (643)
Q Consensus 612 Ive~G~~~eL~~~~g~y~~l~~~q~~~~ 639 (643)
|+|+|+|+||++++|.|++|++.|..+.
T Consensus 1293 IvE~Gth~eLl~~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp EEEEECHHHHHHCC--------------
T ss_pred EEEECCHHHHHhCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999997654
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-99 Score=855.60 Aligned_cols=575 Identities=36% Similarity=0.544 Sum_probs=526.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
+++++++++++++.+++++++.++..++.++.|++++.++|.+....... .........+.+.++++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999886532211 00111111133444555666677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
+.++..+++.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988878888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|++++++++++|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
.++.+....+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999888888888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
+++..+.....+.+...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp CCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 76544322222223345689999999999864 46799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 458 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 458 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+||+|+++++.+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 99999999999999999999999999999999999999976 78899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
|||||||++||||++++|+|+|||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHHHH
Q 006489 618 HEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 618 ~~eL~~~~g~y~~l~~~q 635 (643)
|+||+++++.|+++++.|
T Consensus 559 ~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 559 HRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp HHHHHHTTSHHHHHHTTT
T ss_pred HHHHHhCCcHHHHHHHhh
Confidence 999999999999999766
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-99 Score=858.36 Aligned_cols=572 Identities=32% Similarity=0.530 Sum_probs=529.5
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (643)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (643)
...+++++++++++++.+++++++.++..++.++.|++++.++|.+..... ...+..++++++++.++..++
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 93 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--------FDLLPRYMLILGTIYALTSLL 93 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999999999999999998864322 112233455566667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++.+++.+++++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 173 (598)
T 3qf4_B 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
.++|++++++++++|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 174 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 253 (598)
T 3qf4_B 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253 (598)
T ss_dssp HHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (643)
.+..+..++...+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 333 (598)
T 3qf4_B 254 TKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333 (598)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 375 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
++.+++...+. ..+.++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 334 l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 334 LDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred HcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 98876543222 1222334568999999999975 35799999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 006489 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 534 (643)
Q Consensus 455 ~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G 534 (643)
+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++++ +.++++++++++.++++++++.+|+|+||.+||+|
T Consensus 411 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 489 (598)
T 3qf4_B 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489 (598)
T ss_dssp EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHH
T ss_pred EEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 99999999999999999999999999999999999999999976 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EcChhHHhhcCChHHHHHHHHhcC
Q 006489 615 SGTHEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 615 ~G~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
+|+|+||++++|.|+++++.|...
T Consensus 570 ~g~~~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 570 MGKHDELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHGG
T ss_pred ECCHHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999999988754
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-96 Score=832.26 Aligned_cols=568 Identities=33% Similarity=0.509 Sum_probs=521.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++++++++.+++++++.++..++.++.|++++.++|.+..... ......++++++++.++..++.+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--------SNFLRILPFMILGLMFVRGLSGF 83 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888898888888999999999999999999999998764221 11122233334556677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
++.++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++++++++++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 163 (582)
T 3b5x_A 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b5x_A 164 SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK 243 (582)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
..+...+...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..++..+..++++..+++|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b5x_A 244 LVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998898899988999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
.+++.+... .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 324 ~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 324 LETERDNGK--YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred CCCcCCCCC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 766532211 1112234679999999999753 3579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
++||+|+++++.+++|++|+||||+|++|++||+|||.++. + +.++++++++++.++++++++++|+||||.+||+|.
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~ 479 (582)
T 3b5x_A 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479 (582)
T ss_pred EECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCC
Confidence 99999999999999999999999999999999999999986 4 678999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 615 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~ 615 (643)
+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHHHHh
Q 006489 616 GTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 616 G~~~eL~~~~g~y~~l~~~q~ 636 (643)
|+|+||+++++.|+++++.|.
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 560 GRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred CCHHHHHhCCcHHHHHHHHhh
Confidence 999999999999999999885
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-96 Score=832.23 Aligned_cols=569 Identities=34% Similarity=0.519 Sum_probs=521.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 56 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (643)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (643)
..+++++++++++++.+++++++.++..++.++.|++++.++|.+..... ......++++++++.++..++.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 82 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--------RSVLLWMPLVVIGLMILRGITS 82 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--------HHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888889999999888999999999999999999999997653211 1112222333455667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 215 (643)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (643)
+++.++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++++++.+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 162 (582)
T 3b60_A 83 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 006489 216 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 295 (643)
Q Consensus 216 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 295 (643)
++|++++++++++|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...
T Consensus 163 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 242 (582)
T 3b60_A 163 YSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242 (582)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 296 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (643)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (643)
+..+...+...+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..+.++..+++|+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l 322 (582)
T 3b60_A 243 KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 322 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
+.+++.++.. .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 323 DSEQEKDEGK--RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp HSCCSCCCCC--BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred cCCCCccCCC--CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 8766543211 1112234679999999999743 257999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 006489 456 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 534 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G 534 (643)
|++||+|+++++.+++|++|+||||+|++|++||+|||.++. + +.++++++++++.++++++++++|+|+||.+||+|
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 999999999999999999999999999999999999999986 4 67899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EcChhHHhhcCChHHHHHHHHh
Q 006489 615 SGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 615 ~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
.|+|+||+++++.|+++++.|.
T Consensus 559 ~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 559 RGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp EECHHHHHHHTSSHHHHHHHTC
T ss_pred ecCHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999999874
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.3e-96 Score=832.34 Aligned_cols=577 Identities=45% Similarity=0.708 Sum_probs=506.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++++++++.+++++++.++..++.++.|++++.++|.+........ ...++.+++.++++.++..++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 80 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY-----SDNLTRLCLGLSAVFLCGAAANA 80 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888889999999988999999999999999999999998753211000 01122333444555566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 160 (595)
T 2yl4_A 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFV 160 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 161 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 240 (595)
T 2yl4_A 161 SPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 240 (595)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
..+...+...+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++++..+++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 320 (595)
T 2yl4_A 241 EAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888888888889999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCc-EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 377 RVSSMPKSGNQCPLGDQDGE-VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~-I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
.+++.++.....+..+..++ |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 321 REPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp CCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred CCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 76554322111111223467 99999999997543357999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCC--CCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 006489 456 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGER 533 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~--~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~ 533 (643)
|++||+|+++++.+++|++|+||||+|++|++||+|||.++.+. +.++++++++++.++++++++++|+|+||.+||+
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 99999999999999999999999999999999999999998652 2788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEE
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 613 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Iv 613 (643)
|.+||||||||++|||||+++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEcChhHHhh-cCChHHHHHHHHhcC
Q 006489 614 ESGTHEELLS-KGGVYTALVKRQLQE 638 (643)
Q Consensus 614 e~G~~~eL~~-~~g~y~~l~~~q~~~ 638 (643)
|.|+|+||++ .++.|+++++.|...
T Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 561 EYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp EEECSCC------C------------
T ss_pred EECCHHHHHhCCChHHHHHHHHhhcc
Confidence 9999999998 489999999987654
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-94 Score=876.82 Aligned_cols=582 Identities=36% Similarity=0.541 Sum_probs=523.2
Q ss_pred chhHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C-Cch----hHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKP-DAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------E-TPE----QKAEALAAVRSTI 121 (643)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-------~-~~~----~~~~~~~~~~~~~ 121 (643)
...+.+++++..+ ++..++++++++++..++.++.|++++.++|.+.... . ... ........+..++
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 4457777777754 5666777888888888899999999999998764210 0 000 0001112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 122 LSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALR 201 (643)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~ 201 (643)
+.++++.++..++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 191 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQ 191 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHH
Q 006489 202 NLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEIS 281 (643)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 281 (643)
.++++++++++++.++|++++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|++|+.+.+
T Consensus 192 ~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 192 AMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 282 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVA 361 (643)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 361 (643)
+|.+..++..+...+..+..++..++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAF 351 (1284)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888899999999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCC-CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHH
Q 006489 362 MKAAGASRRVFQLLDRVSSMPKS-GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKST 440 (643)
Q Consensus 362 ~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 440 (643)
+++..+++|+.++++.+++.+.. ....+.+...+.|+|+||+|+|+++++.++|+|+||+|++||++||||||||||||
T Consensus 352 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999887654321 11112223457899999999998754568999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHH
Q 006489 441 IANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 520 (643)
Q Consensus 441 Ll~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~ 520 (643)
|+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||+||++||+|||.+|.+ +.++++++++++.|+++++++
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999976 789999999999999999999
Q ss_pred cCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh
Q 006489 521 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS 600 (643)
Q Consensus 521 ~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~ 600 (643)
.+|+||||.+||+|.+|||||||||+|||||+++|+||||||||||||+++|+.+++++++..+++|+|+||||++++++
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHhc
Q 006489 601 ADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 637 (643)
Q Consensus 601 aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~~ 637 (643)
||+|+||++|+|+|+|+|+||+++++.|++++..|..
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999987653
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-88 Score=825.18 Aligned_cols=578 Identities=34% Similarity=0.527 Sum_probs=519.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++.+++++.+++++++.++..++.++.|+++..+++.+........ .......+.++++++.++..++.+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 692 SFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPET----QRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888899999999999987765432111 111222344455556667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
++.++..+.+.++..++|.++|++++++|+.||++ +++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999994 7899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
.++|.+++++++++|+++++..+..+..++...+..+..+...+.+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (643)
.+...+.+....+...+..+..++++++|++++..|.++++.+++++.+......|+..+...+..+.++..+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888889999999999999999999999999998888888889998888888899999999999999
Q ss_pred hcccCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Q 006489 375 LDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK 453 (643)
Q Consensus 375 l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~ 453 (643)
++.+++..... ...+++...+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 98776543211 11122234578999999999986544579999999999999999999999999999999999999999
Q ss_pred CEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 006489 454 GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGE 532 (643)
Q Consensus 454 G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge 532 (643)
|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+. ..++++++++++.++++++++++|+||||.|||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 9999999999999999999999999999999999999999998652 468999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++++||+|+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEEcChhHHhhcCChHHHHHHHHhcC
Q 006489 613 VESGTHEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 613 ve~G~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
+|.|+|+||++++|.|++|++.|...
T Consensus 1248 ~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1248 KEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred EEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 99999999999999999999988654
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.9e-72 Score=574.48 Aligned_cols=279 Identities=43% Similarity=0.683 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCC
Q 006489 357 LYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGG 436 (643)
Q Consensus 357 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 436 (643)
.+..++++.++++|+.++++.+++........+.....+.|+|+||+|+|++ ..++|+||||+|++||++||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4566778889999999999876654332222222233467999999999974 35799999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCch
Q 006489 437 GKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH 516 (643)
Q Consensus 437 GKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~ 516 (643)
|||||+++|+|+|+|++|+|++||+|+.+++..++|++|+||||+|++|++||+|||.++.+ ..++++++++++.++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999976 68899999999999999
Q ss_pred HHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch
Q 006489 517 DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596 (643)
Q Consensus 517 ~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~ 596 (643)
+++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHhcC
Q 006489 597 TVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 597 ~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
++..||+|+||++|+|++.|+|+||+++++.|+++++.|...
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-59 Score=471.48 Aligned_cols=239 Identities=47% Similarity=0.736 Sum_probs=225.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 3479999999999999999999999999999999999999999999999999999998889999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||||+|.+|+.|++|||.++.+ ..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 5678889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc-CChHHHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVK 633 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~ 633 (643)
|+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999988778999999999999989999999999999999999999887 889999887
Q ss_pred HH
Q 006489 634 RQ 635 (643)
Q Consensus 634 ~q 635 (643)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.7e-59 Score=469.76 Aligned_cols=241 Identities=44% Similarity=0.748 Sum_probs=226.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++||+|+|++....++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.+||.++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||||+|.+|+.|++|||.++.. ..+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999854 4567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
|+|||||||||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+++..
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 253 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHh
Confidence 99999999999999999999999999987789999999999999899999999999999999999999888999999987
Q ss_pred Hhc
Q 006489 635 QLQ 637 (643)
Q Consensus 635 q~~ 637 (643)
|.+
T Consensus 254 ~~~ 256 (260)
T 2ghi_A 254 QSG 256 (260)
T ss_dssp HHC
T ss_pred hhh
Confidence 754
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9.1e-58 Score=465.13 Aligned_cols=242 Identities=47% Similarity=0.783 Sum_probs=222.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++||+|+|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975213579999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCH-HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASS-ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~-~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
|+||||+|.+|+.||+|||.++.+ ..++ +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999854 3443 67788889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 631 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 631 (643)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 9999999999999999999999999998754 89999999999999889999999999999999999999888999999
Q ss_pred HHHHhc
Q 006489 632 VKRQLQ 637 (643)
Q Consensus 632 ~~~q~~ 637 (643)
+..+..
T Consensus 254 ~~~~~~ 259 (271)
T 2ixe_A 254 VEALAA 259 (271)
T ss_dssp HHC---
T ss_pred HHHhhc
Confidence 887643
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-59 Score=466.21 Aligned_cols=237 Identities=47% Similarity=0.762 Sum_probs=223.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999953 347999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccCCCCCcccHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 477 IVSQEPVLFNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
||||+|.+|++|++|||.++ .+ ..++++++++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997 43 56788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHH
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q 635 (643)
+++|||||||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+++..+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 99999999999999999999999988777899999999999999999999999999999999999998888888888765
Q ss_pred h
Q 006489 636 L 636 (643)
Q Consensus 636 ~ 636 (643)
.
T Consensus 239 ~ 239 (243)
T 1mv5_A 239 L 239 (243)
T ss_dssp C
T ss_pred h
Confidence 3
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-55 Score=468.51 Aligned_cols=233 Identities=23% Similarity=0.432 Sum_probs=218.5
Q ss_pred CCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh
Q 006489 393 QDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 393 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 472 (643)
..+.|+++||+|+|++. ..++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34579999999999743 4579999999999999999999999999999999999998 899999999999999999999
Q ss_pred cccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 473 RKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+.|+||+|++.+|+.|++|||.+.. ...+++++++++.+++.+++..+|.+++|.++++|.+||||||||++|||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998663 46788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc-CChHH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYT 629 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~ 629 (643)
++|+|||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||+|+||++|+|++.|+++|+.++ ...|.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 999999999999999999999999999988779999999999999999999999999999999999999875 34443
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.7e-55 Score=438.59 Aligned_cols=227 Identities=29% Similarity=0.512 Sum_probs=209.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999742 35799999999999999999999999999999999999999999999999 69
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
+||||+|++|+.|++|||.++.. .++++.+++++.+++.+++..+|.|++|.+++.+.+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999843 3445677888999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHH---HHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 006489 556 RILLLDEATSALDAESEYLVQDAMD---SLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~---~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
+|+|||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.+++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 9999999999999999999999984 3446899999999999998999999999999999999999999999999999
Q ss_pred HHHhcC
Q 006489 633 KRQLQE 638 (643)
Q Consensus 633 ~~q~~~ 638 (643)
..|...
T Consensus 227 ~~~~~~ 232 (237)
T 2cbz_A 227 RTYASH 232 (237)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 887653
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.5e-55 Score=433.34 Aligned_cols=222 Identities=28% Similarity=0.444 Sum_probs=202.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 359999999999743 35799999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||||+|++|++|++|||.++. ...+.++.++++.+++.++++.+|.+++|.+++.+.+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 3455667788899999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i-~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
|+++|||||||+||+++++.+.+.+ .+..+++|+|+|||+++.++.||+|++|++|+|++.|+++++.+..+.|.+++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999999874 45556899999999999998999999999999999999999988777776654
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.4e-52 Score=434.30 Aligned_cols=225 Identities=30% Similarity=0.493 Sum_probs=195.1
Q ss_pred CcEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---
Q 006489 395 GEVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH--- 470 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~--- 470 (643)
.-|+++|++++|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4599999999997431 246899999999999999999999999999999999999999999999999999998765
Q ss_pred HhcccEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 471 LHRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
+|++|+||+|++.+|.. ||+|||.++.. ...+ ++++.++++.+++.+.....| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47899999999999865 99999988521 0122 345778888888877655444 6899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999865 999999999999999999999
Q ss_pred hhc-CChHHH
Q 006489 622 LSK-GGVYTA 630 (643)
Q Consensus 622 ~~~-~g~y~~ 630 (643)
+.. ...|.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 875 444543
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.6e-52 Score=422.73 Aligned_cols=218 Identities=28% Similarity=0.482 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 473 (643)
-|+++|++|+|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999753 35999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
+|+||+|+| .+|+.|++|||.++.. ...+. +++.++++.+++.++... ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 5789999999988631 12232 356778888877654333 34679999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 3899999999999986 599999999999999999999876
Q ss_pred cCC
Q 006489 624 KGG 626 (643)
Q Consensus 624 ~~g 626 (643)
...
T Consensus 234 ~~~ 236 (275)
T 3gfo_A 234 EKE 236 (275)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.3e-52 Score=415.71 Aligned_cols=216 Identities=30% Similarity=0.452 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL---- 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l---- 471 (643)
|+++||+|+|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2369999999999999999999999999999999999999999999999999999987664
Q ss_pred hcccEEEccCCCCCcc-cHHHHhhcCCC----CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 472 HRKISIVSQEPVLFNC-SIEENIAYGCD----GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~g-TireNI~~~~~----~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
|++|+||+|+|.+|+. |++||+.++.. ...+ .+++.++++.+++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999986 99999987410 0122 23456667777665432 1234578999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~e 620 (643)
||++|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888999999999999999998877
Q ss_pred Hh
Q 006489 621 LL 622 (643)
Q Consensus 621 L~ 622 (643)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-51 Score=408.50 Aligned_cols=220 Identities=28% Similarity=0.444 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 474 (643)
-|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999998887665 556
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
|+||||++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++........+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 999999986311122222222222 2334443 34455566778999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 589999999999876 56999999999999999999998753
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.9e-51 Score=420.06 Aligned_cols=216 Identities=28% Similarity=0.438 Sum_probs=183.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++|++|.| .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999964 2599999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||||++.+|++|++|||. +. ...+.++.++++.+++.+++..+|.+++|.+++.+.+||||||||++|||||+++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 53 3455667788889999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 631 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i-~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 631 (643)
|+++|||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....|.+.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHH
Confidence 9999999999999999999999864 4444689999999999999999999999999999999999997655555443
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-50 Score=410.65 Aligned_cols=215 Identities=29% Similarity=0.458 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999964 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHhhcCCC---CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 476 SIVSQEPVL-FNCSIEENIAYGCD---GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~~~---~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+|++|++.+ |+.|++||+.++.. .+..++++.++++.+++.+.... ...+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 999999987 67899999998742 12235668888888887654332 2357999999999999999
Q ss_pred cc------CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 552 MM------NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 552 ~~------~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 469999999999986 69999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.6e-50 Score=408.97 Aligned_cols=215 Identities=33% Similarity=0.475 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 473 (643)
.|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999985 345567788
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcCC--CCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~~--~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
+|+||||++.+|.. |++||+.++. ....+ ++++.++++.+++.++... ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999976 9999998842 11222 3456778888887665333 34679999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||||+.+|+++|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4899999999999986 5999999999999999999999865
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-50 Score=405.42 Aligned_cols=214 Identities=31% Similarity=0.474 Sum_probs=189.1
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999963 479999999999999999999999999999999999999999999999999976 56678899
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|+||||++.+|.. |++||+.++.. ...+ ++++.++++.+++.++... ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999876 99999987521 0122 2457788888888765433 3467999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||+++|+|+|||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998874 58999999999999876 99999999999999999999875
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-50 Score=405.89 Aligned_cols=214 Identities=29% Similarity=0.485 Sum_probs=189.7
Q ss_pred EEEEeEEEECCCCCC--CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 899999999962111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred cEEEccCC--CCCcccHHHHhhcCCC----CCCCHHHHHHHHHHcCch--HHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 475 ISIVSQEP--VLFNCSIEENIAYGCD----GKASSADIENAAKMANAH--DFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 475 i~~V~Q~~--~Lf~gTireNI~~~~~----~~~~~~~i~~al~~a~l~--~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
|+||+|+| .+++.|++||+.++.. .+..++++.++++.+++. ++....| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 5678999999998632 122356789999999998 7766555 579999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||||+++|+|+|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999875 999999999999999999998764
No 28
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.1e-50 Score=419.43 Aligned_cols=221 Identities=30% Similarity=0.504 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~ 473 (643)
.|+++|++++|.+ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 479999999999999999999999999999999999999999999999999833 22334577
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+|+||+|++.+|. -||+|||.|+... .. .++++.++++.+++.++....| ..||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 5999999997421 11 2356788899988877665555 5789999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||+.+|++||||||||+||+.+...+.+.+.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776543 4899999999999875 5999999999999999999999875
Q ss_pred -CChHHH
Q 006489 625 -GGVYTA 630 (643)
Q Consensus 625 -~g~y~~ 630 (643)
...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 334443
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-50 Score=405.89 Aligned_cols=215 Identities=32% Similarity=0.468 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC----------C
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV----------E 465 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~----------~ 465 (643)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3999999999963 46999999999999999999999999999999999999999999999999986 2
Q ss_pred CCH---HHHhcccEEEccCCCCCcc-cHHHHhhcCC--CCCCC----HHHHHHHHHHcCchHH-HHcCCCcccccccCCC
Q 006489 466 ISH---EHLHRKISIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDF-ISNFPEKYQTFVGERG 534 (643)
Q Consensus 466 ~~~---~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~--~~~~~----~~~i~~al~~a~l~~~-i~~lp~G~~T~vge~G 534 (643)
++. ..+|++|+||+|++.+|.. |++||+.++. ....+ ++++.++++.+++.++ .... .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 443 3567889999999999876 9999998841 01122 3457788888888776 4443 3
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 612 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~I 612 (643)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998864 4899999999999986 6999999999999
Q ss_pred EEEcChhHHhhc
Q 006489 613 VESGTHEELLSK 624 (643)
Q Consensus 613 ve~G~~~eL~~~ 624 (643)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999999864
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.3e-50 Score=398.52 Aligned_cols=209 Identities=27% Similarity=0.366 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 472 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 46999999999999999999999999999999999999999999999999998887543 34
Q ss_pred -cccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 -RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 -~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++|+||||++.+|. .|++||+.++.. ...+ ++++.++++.+++.++... ...+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-----------KPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 78999999999986 599999987521 0111 3456777887777654333 3368999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcCh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~ 618 (643)
+|||||+.+|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.++.||+|++|++|+|++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 48999999999999888999999999999999874
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1e-49 Score=419.79 Aligned_cols=218 Identities=30% Similarity=0.479 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999988765 4679
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.||. -||+|||.|+.. ...+ ++++.++++.+++.++....| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 99999999996 499999998621 1223 345778888888877655555 578999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc-C
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK-G 625 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~-~ 625 (643)
||+.+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||+|+||++|+|++.|+++|+.+. .
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999988743 899999999998874 6999999999999999999999875 3
Q ss_pred ChHH
Q 006489 626 GVYT 629 (643)
Q Consensus 626 g~y~ 629 (643)
..|.
T Consensus 227 ~~~v 230 (381)
T 3rlf_A 227 DRFV 230 (381)
T ss_dssp BHHH
T ss_pred cHHH
Confidence 4443
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-49 Score=402.46 Aligned_cols=211 Identities=26% Similarity=0.399 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988765 446788
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCC---C-----------CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDG---K-----------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~---~-----------~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
|+||||++.+|. .|++||+.++... . .+ .+++.++++..++.+. ......
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCch
Confidence 999999999986 6999999886321 1 11 2335556666555443 344557
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 4899999999999875 69999999999999
Q ss_pred EEcChhH
Q 006489 614 ESGTHEE 620 (643)
Q Consensus 614 e~G~~~e 620 (643)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.8e-49 Score=397.04 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 4899999999999999999999999999999999999999 9999999999988888899999
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
+||||++.+|.. |++||+.++.....+++++.++++..++.++.. ....+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999865 999999987421224777889999998876543 34568999999999999999999
Q ss_pred CC-------EEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 555 PR-------ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 555 p~-------IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|+ +||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 589999999999998 6799999999999999999999875
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-49 Score=406.44 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 473 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999964 46999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccEEEccCCCC-Ccc--cHHHHhhcCCCC------CCC---HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 474 KISIVSQEPVL-FNC--SIEENIAYGCDG------KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 474 ~i~~V~Q~~~L-f~g--TireNI~~~~~~------~~~---~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
+|+||+|++.+ |.. |++|||.++... ..+ ++++.++++.+++.++.. ....+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----------QYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHH
Confidence 99999999875 555 999999986310 112 235677777777765432 3346799999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeE--EEEccCchhH-hhcCeEEEEeCCEEEEEcC
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTV--LVIAHRLSTV-QSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~Tv--I~VtHrl~~i-~~aD~Iivl~~G~Ive~G~ 617 (643)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999987743 7899 9999999987 5699999999999999999
Q ss_pred hhHHhhc
Q 006489 618 HEELLSK 624 (643)
Q Consensus 618 ~~eL~~~ 624 (643)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-49 Score=394.90 Aligned_cols=209 Identities=32% Similarity=0.472 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
||||++.+|.. |++||+.++.. .. +++++.++++..++.++.... ..+||||||||++|||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARAL 141 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EEcCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999999976 99999998742 11 135577788887776554333 357999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
+++|+++|||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+..
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999988743 89999999999986 569999999999999999999997654
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6e-49 Score=412.74 Aligned_cols=214 Identities=29% Similarity=0.504 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999887753 5789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. -|++|||.|+... ..+ ++++.++++.+++.++....| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 4999999997321 122 346888999999987766655 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988643 89999999999987 569999999999999999999998753
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.9e-49 Score=412.37 Aligned_cols=215 Identities=30% Similarity=0.538 Sum_probs=189.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999942 2469999999999999999999999999999999999999999999999999987654 4678
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|+||+|++.+|. -|++|||.|+.. ...+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 999999999997 599999998621 0122 356788999999887766555 57999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988753 899999999999875 5999999999999999999999865
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-49 Score=414.31 Aligned_cols=214 Identities=36% Similarity=0.589 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. -|++|||.|+.. ...+ ++++.++++.+++.++....| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999997 499999998621 0122 345788888888877655555 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988743 89999999999986 569999999999999999999998753
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-48 Score=409.50 Aligned_cols=211 Identities=34% Similarity=0.559 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 9999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
||+|++.+|+. |++|||.|+.. ....++++.++++..++.++....| .+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999998621 0112377889999999877655554 5799999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+|++||||||||+||+.+++.+.+.|+++. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998874 389999999999876 56999999999999999999999865
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.6e-49 Score=413.39 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=189.0
Q ss_pred cEEEEeEEEECCCCCCCc--ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHH
Q 006489 396 EVELDDVWFAYPSRPNHM--VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~--vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~ 470 (643)
.|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 35 999999999999999999999999999999999999999999999999986521 233
Q ss_pred HhcccEEEccCCCCCcc-cHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 471 LHRKISIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~g-TireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
.+++|+||+|++.+|.. |++|||.|+... ..+ ++++.++++..++.++....| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57889999999999975 999999997321 122 346788999999887766555 5799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 799999999999874 6999999999999999999999
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.++
T Consensus 229 ~~~ 231 (353)
T 1oxx_K 229 YDN 231 (353)
T ss_dssp HHS
T ss_pred HhC
Confidence 875
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-48 Score=412.02 Aligned_cols=213 Identities=28% Similarity=0.504 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. -|++|||.|+... ..+ ++++.++++.+++.++....| .+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999997421 123 245788899988887766555 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999988743 79999999999987 56999999999999999999999875
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.3e-49 Score=395.46 Aligned_cols=210 Identities=28% Similarity=0.488 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-hc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-HR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 473 (643)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4699999999999999999999999999999999998 89999999999999998887665 55
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcCCC----CCCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCCCCC-CCHHHH
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYGCD----GKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERGVR-LSGGQK 542 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~~~----~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~-LSGGQr 542 (643)
.++||+|+|.+|++ |++||+.++.. ...+ ++++.++++..++. +.... .+ .. ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-------YL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-------BT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-------Cc----ccCCCHHHH
Confidence 69999999999975 99999977420 0112 23466677777663 33222 22 34 999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh--cCeEEEEeCCEEEEEcChh
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive~G~~~ 619 (643)
||++|||||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999875 47899999999999886 5999999999999999987
Q ss_pred H
Q 006489 620 E 620 (643)
Q Consensus 620 e 620 (643)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.2e-48 Score=411.30 Aligned_cols=213 Identities=28% Similarity=0.520 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC------CCHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE------ISHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~------~~~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999953 469999999999999999999999999999999999999999999999999876 554
Q ss_pred HHhcccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 HLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+++|+||+|++.+|. .|++|||.|+.. ...+ ++++.++++.+++.++....| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 699999998621 0122 345788888888877665555 579999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987743 899999999999874 699999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
++++
T Consensus 227 l~~~ 230 (372)
T 1g29_1 227 VYDK 230 (372)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9875
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-47 Score=389.19 Aligned_cols=213 Identities=25% Similarity=0.391 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-h
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-H 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r 472 (643)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+...+ |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4799999999999999999999999999999999999 57899999999999988887665 4
Q ss_pred cccEEEccCCCCCcc-cHHHHhhcCC--------CCCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCC--CCC
Q 006489 473 RKISIVSQEPVLFNC-SIEENIAYGC--------DGKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERG--VRL 537 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~g-TireNI~~~~--------~~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G--~~L 537 (643)
..|+||+|+|.+|.+ |++||+.++. ....+. +++.++++..++. +...++. .+|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP-----------EDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-----------TTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC-----------hhHhcCCcccCC
Confidence 569999999999875 9999986531 001232 3455566665553 2222222 259
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh--cCeEEEEeCCEEEE
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVE 614 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive 614 (643)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 47899999999999876 89999999999999
Q ss_pred EcChhHHh
Q 006489 615 SGTHEELL 622 (643)
Q Consensus 615 ~G~~~eL~ 622 (643)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99999874
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-47 Score=386.79 Aligned_cols=202 Identities=26% Similarity=0.374 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 24699999999999999999999999999999999999999999998 35689
Q ss_pred EEEccCCCCC-cccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 476 SIVSQEPVLF-NCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 476 ~~V~Q~~~Lf-~gTireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+||||++.+| +.|++||+.++... ...++++.++++.+++.++... ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999988 67999999986310 1113457888888888765433 3468999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988753 79999999999998 5799999999999 9999999986
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-47 Score=388.48 Aligned_cols=209 Identities=20% Similarity=0.318 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 397 VELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
|+++|++++|++. ...++|+|+||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01469999999999 9999999999999999999999999 9999999999998765 33 7789
Q ss_pred E-EEccCCCCCcccHHHHhhcCCC-CCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 S-IVSQEPVLFNCSIEENIAYGCD-GKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~-~V~Q~~~Lf~gTireNI~~~~~-~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+ ||||++.+ +.|++||+.++.+ .+.+++++.++++..++. +. ......+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999988531 034567788888887775 43 33445789999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcC-eEEEEeCCEEEEEcChhHHhhc
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSAD-TVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD-~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
++|+++|||||||+||+++++.+.+.|+++.+ |+|+|||+++.+ +.|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988744 999999999987 5699 9999999999999999998753
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-46 Score=367.25 Aligned_cols=197 Identities=25% Similarity=0.419 Sum_probs=167.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|+ . ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC--C-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCD--G-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~--~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+||||+|.+|.+ |++||+.++.. . +.+++++.++++..++.+ . .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999976 99999987521 0 123567778877776543 2 345678999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEE
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIV 613 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Iv 613 (643)
+++|+++|||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..++..+++.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998764 478999999999998774444456667763
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.5e-44 Score=370.73 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=198.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECC
Q 006489 328 ITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYP 407 (643)
Q Consensus 328 ~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~ 407 (643)
..+..+-+.+.+|+.+..+ ..|+..+...+..++++..+..|+.++++.+++...... +.....+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC
Confidence 3445666788888877666 479999999999999999999999999987544321111 1011123589999999996
Q ss_pred CCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc
Q 006489 408 SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC 487 (643)
Q Consensus 408 ~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g 487 (643)
.++|+|+||+|++|++++||||||||||||+++|+|++ +|+| ++|++|++++|++
T Consensus 113 ----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 113 ----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLA 167 (305)
T ss_dssp ----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGG
T ss_pred ----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccc
Confidence 36999999999999999999999999999999999999 8998 4678999999999
Q ss_pred cHHH-HhhcCCCCCCCHHHHHHHHHHcCchHHHHc-CCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC
Q 006489 488 SIEE-NIAYGCDGKASSADIENAAKMANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565 (643)
Q Consensus 488 Tire-NI~~~~~~~~~~~~i~~al~~a~l~~~i~~-lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS 565 (643)
|++| ||.++ + +.++ +++++++. ||+|+| |.+|||||||| |||++++|+||| ||
T Consensus 168 ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 168 SLADTRAALV-D-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred cHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 9998 99997 2 4554 33567777 999998 78999999999 999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHh
Q 006489 566 ALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 566 aLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
+||+++++.+.. +|||+++++.||+| +|++|+|++.|+|++| ++.|++++..+.
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 999999998852 39999999999999 9999999999999999 678998887654
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7e-38 Score=348.04 Aligned_cols=200 Identities=26% Similarity=0.317 Sum_probs=168.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999953 36999999999999999999999999999999999999999999862 379
Q ss_pred EEEccCCCC-CcccHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 476 SIVSQEPVL-FNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+||||++.. ++.|+.||+... .......+++.++++..++.+. ......+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 578999998653 1100123445555555555432 223346899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeC--CEEEEEcChhHHhh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 623 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~--G~Ive~G~~~eL~~ 623 (643)
+|++|||||||++||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 3899999999999986 5999999986 88999999988765
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.8e-38 Score=350.26 Aligned_cols=200 Identities=26% Similarity=0.317 Sum_probs=169.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++++|++++|.+ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999953 36999999999999999999999999999999999999999999862 379
Q ss_pred EEEccCCCC-CcccHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 476 SIVSQEPVL-FNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+||||++.+ ++.|++||+... .......+.+.++++..++.+.. ...-.+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-----------DRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 578999999754 11001234566677766664432 22335799999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeC--CEEEEEcChhHHhh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 623 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~--G~Ive~G~~~eL~~ 623 (643)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 4899999999999986 5999999986 88889999998875
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-37 Score=342.38 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=168.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++++|++++|.+ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999963 468888999999999999999999999999999999999999999876 368
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCCC--CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVL-FNCSIEENIAYGCDGK--ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~~~~~--~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+|+||++.. +..|++||+.+..... ...+.+.++++..++.+... ....+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----------SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-----------SBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999875 5789999997743211 22344566777776654332 334679999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeC--CEEEEEcChhHHhh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELLS 623 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~--G~Ive~G~~~eL~~ 623 (643)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|+||++ |.+...+++.++..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998874 48999999999999865 999999986 66777777766543
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.4e-36 Score=351.66 Aligned_cols=199 Identities=26% Similarity=0.401 Sum_probs=155.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++|+|++. ..++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999753 357999999999999999999999999999999999999999999999872 158
Q ss_pred EEEccCCCC-----CcccHHHHhh--------------------------------------------------------
Q 006489 476 SIVSQEPVL-----FNCSIEENIA-------------------------------------------------------- 494 (643)
Q Consensus 476 ~~V~Q~~~L-----f~gTireNI~-------------------------------------------------------- 494 (643)
+|++|++.. ++.|+++|+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887631 2345555543
Q ss_pred ----------cCCC----------------------------------------CCCCHHHHHHHHHHcCchHHHHcCCC
Q 006489 495 ----------YGCD----------------------------------------GKASSADIENAAKMANAHDFISNFPE 524 (643)
Q Consensus 495 ----------~~~~----------------------------------------~~~~~~~i~~al~~a~l~~~i~~lp~ 524 (643)
++.. .+..++++.++++..++.+...
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---- 894 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---- 894 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh----
Confidence 2100 0112334455555555543210
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCe
Q 006489 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADT 603 (643)
Q Consensus 525 G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~ 603 (643)
......+||||||||++|||||+++|+||||||||++||+++...+.+.|+++ +.|+|+|||+++.+. .||+
T Consensus 895 -----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 895 -----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp -----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 12234679999999999999999999999999999999999999999999875 679999999999985 5999
Q ss_pred EEEEeCCEEEEEcC
Q 006489 604 VAVVSDGEIVESGT 617 (643)
Q Consensus 604 Iivl~~G~Ive~G~ 617 (643)
|++|++|+|++.|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999988775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=334.77 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=166.7
Q ss_pred EeEEEECCCCCCCcceeceeEEeeCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 400 DDVWFAYPSRPNHMVLKGITLKLLSG-----SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 400 ~~vsf~Y~~~~~~~vL~~isl~i~~G-----~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999753 35799999999998 7899999999999999999999999999973 11 236
Q ss_pred cEEEccCCC-CCcccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 475 ISIVSQEPV-LFNCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 475 i~~V~Q~~~-Lf~gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
++|+||++. .|+.|+++|+..... ...+.+...++++..++.+... ..-..||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-----------QEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-----------SBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999976 468999999864321 1234555667777777654322 234679999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeC--CEEEEEcChhHHhhc
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELLSK 624 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~--G~Ive~G~~~eL~~~ 624 (643)
.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998764 48999999999999865 999999986 999999999999874
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.7e-36 Score=337.46 Aligned_cols=197 Identities=24% Similarity=0.316 Sum_probs=160.5
Q ss_pred cEEE--------EeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE---------EE
Q 006489 396 EVEL--------DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI---------LL 458 (643)
Q Consensus 396 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I---------~i 458 (643)
.|++ +|++++|++. ..+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999643 25899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHHH--HhcccEEEccCC----CCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 006489 459 NGVPLVEISHEH--LHRKISIVSQEP----VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532 (643)
Q Consensus 459 dg~~i~~~~~~~--lr~~i~~V~Q~~----~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge 532 (643)
+|.++.++.... .+..+++++|.. .++.+|++||+.... ..+++.++++..++.+.....
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------- 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------- 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB----------
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC----------
Confidence 665543321111 234688998874 345579999997532 124577888888876543332
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCC
Q 006489 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 610 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G 610 (643)
-.+||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++
T Consensus 226 -~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 -LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 25699999999999999999999999999999999999999999998874 48999999999998864 9999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.8e-34 Score=331.24 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=165.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..+...|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999964 469999999999999999999999999999999996 554 5544321 124
Q ss_pred cEEEccCC-CC-CcccHHHHhhcCCCCCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 475 ISIVSQEP-VL-FNCSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 475 i~~V~Q~~-~L-f~gTireNI~~~~~~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
++|++|++ .+ ..-|++||+.+... .. ++++.++++..++. +.....+ ..||||||||++|||||
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAV 563 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 78999985 34 45799999986211 22 77899999999984 4443322 46999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEE-EEcChhHHhh
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
+.+|+||||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988 6899999999999986 59999999999997 5899999875
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5e-36 Score=333.15 Aligned_cols=196 Identities=26% Similarity=0.327 Sum_probs=155.9
Q ss_pred EEE-EeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE---------EECCEeCCCC
Q 006489 397 VEL-DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI---------LLNGVPLVEI 466 (643)
Q Consensus 397 I~~-~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I---------~idg~~i~~~ 466 (643)
.++ +|++++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 466 6899999643 25899999 999999999999999999999999999999999996 4566554332
Q ss_pred CHHH--HhcccEEEccCCCC----CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 467 SHEH--LHRKISIVSQEPVL----FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 467 ~~~~--lr~~i~~V~Q~~~L----f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
.... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++.++.. .. -.+||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~~-------~~----~~~LSgG 162 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVLE-------RE----IQHLSGG 162 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTTT-------SB----GGGCCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhhh-------CC----hhhCCHH
Confidence 1111 13468899997544 3469999996531 1245778888888754322 22 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCC
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 610 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G 610 (643)
||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998764 48999999999999865 9999999864
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-35 Score=338.37 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=154.0
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH----------------------cCCCCCCCEEEECCEeCCCCCHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE----------------------RFYDPIKGKILLNGVPLVEISHE 469 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~----------------------g~~~p~~G~I~idg~~i~~~~~~ 469 (643)
.++|+||||+|++||++||+||||||||||+++|+ |+ .+.+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl-~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL-EHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECG-GGCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccc-cccCceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 33 33457899999888654421
Q ss_pred HHhc-----------------------------------------ccEEEccCCCC------------------------
Q 006489 470 HLHR-----------------------------------------KISIVSQEPVL------------------------ 484 (643)
Q Consensus 470 ~lr~-----------------------------------------~i~~V~Q~~~L------------------------ 484 (643)
..+. ..+++.|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 11233333222
Q ss_pred ---------CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 485 ---------FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 485 ---------f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
++-|++||+.+... ....++..+++...++.+ ........+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-IPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-CHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-hhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 14589999988743 222233444444444321 1234567789999999999999999886
Q ss_pred ---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------eCCEEEEEcChhHHhhcC
Q 006489 556 ---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKG 625 (643)
Q Consensus 556 ---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~~G~Ive~G~~~eL~~~~ 625 (643)
+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.++.||+|++| ++|+|++.|+++|+.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998774 489999999999999999999999 899999999999998765
Q ss_pred ChH
Q 006489 626 GVY 628 (643)
Q Consensus 626 g~y 628 (643)
..|
T Consensus 643 ~~~ 645 (670)
T 3ux8_A 643 ESH 645 (670)
T ss_dssp TCH
T ss_pred ccH
Confidence 444
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.5e-35 Score=335.65 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=137.6
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHH---------------------HHHHcCCCCC-------CCEEEECCEeC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIA---------------------NLIERFYDPI-------KGKILLNGVPL 463 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl---------------------~lL~g~~~p~-------~G~I~idg~~i 463 (643)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998 55666666554
Q ss_pred CCCCHHHHhcccEEEccCCCCC--------------------cccHHHHhhcCCCCCCCH--HH-----HHHHHHHcCch
Q 006489 464 VEISHEHLHRKISIVSQEPVLF--------------------NCSIEENIAYGCDGKASS--AD-----IENAAKMANAH 516 (643)
Q Consensus 464 ~~~~~~~lr~~i~~V~Q~~~Lf--------------------~gTireNI~~~~~~~~~~--~~-----i~~al~~a~l~ 516 (643)
.. ..+..+++|+|.+.++ .-|++||+.+.......+ .+ ..++.+..+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 32 2345677777765442 459999998752111111 11 111111111
Q ss_pred HHHHcCCCccccc-ccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEc
Q 006489 517 DFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 592 (643)
Q Consensus 517 ~~i~~lp~G~~T~-vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~Vt 592 (643)
.++.+ |++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+||
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 12222 22211 223456799999999999999999988 999999999999999999999998764 589999999
Q ss_pred cCchhHhhcCeEEEE------eCCEEEEEcChhHHhhcCC
Q 006489 593 HRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGG 626 (643)
Q Consensus 593 Hrl~~i~~aD~Iivl------~~G~Ive~G~~~eL~~~~g 626 (643)
|+++.+..||+|++| ++|+|++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999999999999 8999999999999987644
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-34 Score=333.56 Aligned_cols=218 Identities=26% Similarity=0.410 Sum_probs=167.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHH---------HHHHcCCCCC------CC------
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIA---------NLIERFYDPI------KG------ 454 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl---------~lL~g~~~p~------~G------ 454 (643)
.+++++++ ...|+||||+|++|++++|+|+||||||||+ +++.+...+. +|
T Consensus 589 ~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 589 SLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred eEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46666553 2479999999999999999999999999997 4444443332 33
Q ss_pred EEEECCEeCCCCCH----------HHHh-------------------------------cccEEEccCCCCC--------
Q 006489 455 KILLNGVPLVEISH----------EHLH-------------------------------RKISIVSQEPVLF-------- 485 (643)
Q Consensus 455 ~I~idg~~i~~~~~----------~~lr-------------------------------~~i~~V~Q~~~Lf-------- 485 (643)
.|.+|..++..... +.+| +..++++|+..++
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 35666666543221 1111 2357777776654
Q ss_pred -------------------------cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 486 -------------------------NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 486 -------------------------~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
+.|++||+.|... ....++..++++.+++.. ..+|+.+.+||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~-~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGG 809 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN-IPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGG 809 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT-CHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc-chhHHHHHHHHHHcCCch----------hhccCCccCCCHH
Confidence 3578888887743 223345556666666532 3468889999999
Q ss_pred HHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------eCC
Q 006489 541 QKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDG 610 (643)
Q Consensus 541 QrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~~G 610 (643)
|||||+|||||+++| +||||||||++||+++++.+.+.|+++. +++|+|+|+|+++.++.||+|++| ++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G 889 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGG 889 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCC
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCC
Confidence 999999999999876 7999999999999999999999998774 589999999999999999999999 899
Q ss_pred EEEEEcChhHHhhcCChHHHHH
Q 006489 611 EIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 611 ~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
+|+++|+|+|+++..+.|..-+
T Consensus 890 ~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 890 YIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp EEEEEESHHHHHSCTTCHHHHH
T ss_pred EEEEEcCHHHHHhCCchHHHHH
Confidence 9999999999998877775543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=314.95 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=153.0
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE-----------EECCEeCCCCCHH
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-----------LLNGVPLVEISHE 469 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~~~ 469 (643)
|++++|... ...|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568899753 35778777 689999999999999999999999999999999998 3444444333333
Q ss_pred HHhcccE--EEccCCC----CCc---ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 470 HLHRKIS--IVSQEPV----LFN---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 470 ~lr~~i~--~V~Q~~~----Lf~---gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
.+++.+. +.+|... .+. .++.+++.... ...++++.++++..++.++....| ..||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgG 225 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLKRDI-----------EKLSGG 225 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGGSCT-----------TTCCHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhCCCh-----------HHCCHH
Confidence 3444443 3333322 122 26788876542 345678899999988876544433 579999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
||||++|||||+++|+|||||||||+||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|.
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999998875 47899999999999865 99999998765
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-33 Score=312.68 Aligned_cols=192 Identities=20% Similarity=0.298 Sum_probs=153.1
Q ss_pred eEEEECCCCCCCcceeceeEE-eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE-----------EECCEeCCCCCH
Q 006489 401 DVWFAYPSRPNHMVLKGITLK-LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-----------LLNGVPLVEISH 468 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~-i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~~ 468 (643)
+++.+|... -++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567889643 24444444 45999999999999999999999999999999999 677876644322
Q ss_pred HHH------hcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHL------HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~l------r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
... ...+.|++|.+.++.+|+++++..... .+++.++++..++.+... .. -..||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~~-------~~----~~~LSgGe~ 144 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLWN-------KD----ANILSGGGL 144 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGTT-------SB----GGGCCHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhhc-------CC----hhhCCHHHH
Confidence 222 223556677777888999999864321 235678888888765422 22 356999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCE
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGE 611 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~ 611 (643)
||++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999888999999999999885 599999998753
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=1.1e-32 Score=316.51 Aligned_cols=215 Identities=22% Similarity=0.359 Sum_probs=158.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHH-HHcCC-------CC---------------
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANL-IERFY-------DP--------------- 451 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~l-L~g~~-------~p--------------- 451 (643)
..++++|+++ ..|+||||+|++|+++||+|+||||||||++. |.|++ +|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 15999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------EEEECCEeCCCCCH----------HHHhcccEEEc---------cC---------------------
Q 006489 452 ---IKG-------KILLNGVPLVEISH----------EHLHRKISIVS---------QE--------------------- 481 (643)
Q Consensus 452 ---~~G-------~I~idg~~i~~~~~----------~~lr~~i~~V~---------Q~--------------------- 481 (643)
.+| .|.+|+.++...+. +.+|+.++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999988864332 34444333332 21
Q ss_pred -CCCC-------------------------cccHHHHh--------hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc
Q 006489 482 -PVLF-------------------------NCSIEENI--------AYGCDGKASSADIENAAKMANAHDFISNFPEKYQ 527 (643)
Q Consensus 482 -~~Lf-------------------------~gTireNI--------~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~ 527 (643)
-.++ .-||.||+ .+... ....+++.++++..++. +.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~~~~~~~~~L~~~gL~---------~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ESAIFRALDTLREVGLG---------YL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SHHHHHHHHHHHHTTCT---------TS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-chHHHHHHHHHHHcCCC---------cc
Confidence 1111 12455554 33311 11112233344333332 11
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCe
Q 006489 528 TFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADT 603 (643)
Q Consensus 528 T~vge~G~~LSGGQrQRialARAl~~~---p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~ 603 (643)
.++....+||||||||++|||||+++ |+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+
T Consensus 723 -~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 723 -RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp -BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred -cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 35667789999999999999999996 79999999999999999999999998764 58999999999999999999
Q ss_pred EEEE------eCCEEEEEcChhHHhhcCChH
Q 006489 604 VAVV------SDGEIVESGTHEELLSKGGVY 628 (643)
Q Consensus 604 Iivl------~~G~Ive~G~~~eL~~~~g~y 628 (643)
|++| ++|+|++.|+++++.+....|
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 9999 699999999999998765444
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=6.4e-32 Score=292.86 Aligned_cols=201 Identities=19% Similarity=0.237 Sum_probs=155.9
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC--------------------------------------CCCCE
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--------------------------------------PIKGK 455 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~--------------------------------------p~~G~ 455 (643)
.++++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966653 45789
Q ss_pred EEECCEeCCCCCHHHHhcc-cEEEccCCCCCcccHHHHhhcCCCCCCCH--H-------HHHHHHHH-------------
Q 006489 456 ILLNGVPLVEISHEHLHRK-ISIVSQEPVLFNCSIEENIAYGCDGKASS--A-------DIENAAKM------------- 512 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~-i~~V~Q~~~Lf~gTireNI~~~~~~~~~~--~-------~i~~al~~------------- 512 (643)
+++||.+++..+..++.+. +++++|++.++-.+..++..+.+. -... . ++.++.+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999987777787777 899999999888777766655432 1110 0 00000000
Q ss_pred -----------------------------------cCchHHHHcC--C----------------Ccccc---cccCCCCC
Q 006489 513 -----------------------------------ANAHDFISNF--P----------------EKYQT---FVGERGVR 536 (643)
Q Consensus 513 -----------------------------------a~l~~~i~~l--p----------------~G~~T---~vge~G~~ 536 (643)
..+.+.+..+ | .|.+. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0011112222 1 13332 34444444
Q ss_pred --------CCHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEE
Q 006489 537 --------LSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 537 --------LSGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
||||||||++|||+|+++| +|||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998789999999999999999999999
Q ss_pred E----eCCEEEEEc
Q 006489 607 V----SDGEIVESG 616 (643)
Q Consensus 607 l----~~G~Ive~G 616 (643)
| ++|+++...
T Consensus 368 l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 368 VEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEeccCCceEEEE
Confidence 9 999998653
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.1e-31 Score=308.26 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=159.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH-cC----C---CCCCC-------------
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-RF----Y---DPIKG------------- 454 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~-g~----~---~p~~G------------- 454 (643)
.++++|++. ..|+||||+|++|+++||+|+||||||||+++|+ |. + .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588999852 2699999999999999999999999999999864 21 1 11233
Q ss_pred EEEECCEeCCCCC---HH-------HHh---------cccEEEccCCCC-------------------------------
Q 006489 455 KILLNGVPLVEIS---HE-------HLH---------RKISIVSQEPVL------------------------------- 484 (643)
Q Consensus 455 ~I~idg~~i~~~~---~~-------~lr---------~~i~~V~Q~~~L------------------------------- 484 (643)
.|.+|+.++..-. +. ..| +.++|++|...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998875321 11 112 346888885321
Q ss_pred ------------------------CcccHHHHhhcCCCCCCC-HHHHHHHHHHcCchHHHHcCCCcccc-cccCCCCCCC
Q 006489 485 ------------------------FNCSIEENIAYGCDGKAS-SADIENAAKMANAHDFISNFPEKYQT-FVGERGVRLS 538 (643)
Q Consensus 485 ------------------------f~gTireNI~~~~~~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T-~vge~G~~LS 538 (643)
.+-|+.||+.++.. .. .++..++++.. |+.. ..+....+||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~~~~~~~~~~L~~~-----------gL~~~~l~~~~~~LS 847 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDV-----------GLGYMKLGQPATTLS 847 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--CHHHHHHHHHHHHT-----------TCSSSBTTCCGGGCC
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--chhHHHHHHHHHHc-----------CCCcccccCchhhCC
Confidence 02266677766532 21 11222333333 3333 4566778999
Q ss_pred HHHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------e
Q 006489 539 GGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------S 608 (643)
Q Consensus 539 GGQrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~ 608 (643)
||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|++| +
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999999875 9999999999999999999999998764 589999999999999999999999 7
Q ss_pred CCEEEEEcChhHHhhcCChHH
Q 006489 609 DGEIVESGTHEELLSKGGVYT 629 (643)
Q Consensus 609 ~G~Ive~G~~~eL~~~~g~y~ 629 (643)
+|+|++.|+++++.+....|.
T Consensus 928 ~G~Iv~~g~~~el~~~~~~~t 948 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKESHT 948 (972)
T ss_dssp CCSEEEEESHHHHHTCTTCHH
T ss_pred CCEEEEecCHHHHHhCchhHH
Confidence 899999999999987655453
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-35 Score=321.61 Aligned_cols=192 Identities=11% Similarity=0.121 Sum_probs=154.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-E-EEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-K-ILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~-I~idg~~i~~~~~~~lr~ 473 (643)
.++++|++|+|+ ++||++++|++++|+||||||||||+++|+|+++|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 366667766662 79999999999999999999999999999999999999 9 99998 1 477
Q ss_pred ccEEEccCCCCCc----ccHHHHhhcCCCC--C-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEPVLFN----CSIEENIAYGCDG--K-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~----gTireNI~~~~~~--~-~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
.++||||++.+|. .|++||+ ++... . ..++++.++++.++ ++.... ..+||||||||++
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHHH
Confidence 8999999996543 5999999 76320 0 11122223333333 333322 6789999999999
Q ss_pred HHHH--HccCCCE----EEEec-ccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch------hH-hhcCe-----EEEE
Q 006489 547 IARA--LMMNPRI----LLLDE-ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS------TV-QSADT-----VAVV 607 (643)
Q Consensus 547 lARA--l~~~p~I----liLDE-~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~------~i-~~aD~-----Iivl 607 (643)
|||| |+.+|++ +|||| |||+||+. .+.+.+.++++ ++|+|+|+|+.+ .+ +.||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 77777777664 789999999987 43 56999 9999
Q ss_pred e-CCEEEEEcChhHHhh
Q 006489 608 S-DGEIVESGTHEELLS 623 (643)
Q Consensus 608 ~-~G~Ive~G~~~eL~~ 623 (643)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998854
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=4.9e-31 Score=303.85 Aligned_cols=217 Identities=24% Similarity=0.342 Sum_probs=159.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH-c----CCC---CCCC------------
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-R----FYD---PIKG------------ 454 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~-g----~~~---p~~G------------ 454 (643)
..++++|++. ..|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 2699999999999999999999999999999854 2 221 1334
Q ss_pred -EEEECCEeCCCCC---HH-------HHh---------cccEEEccCCCC---------------------C--------
Q 006489 455 -KILLNGVPLVEIS---HE-------HLH---------RKISIVSQEPVL---------------------F-------- 485 (643)
Q Consensus 455 -~I~idg~~i~~~~---~~-------~lr---------~~i~~V~Q~~~L---------------------f-------- 485 (643)
.|.+|+.++.... +. ..| +.++|++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 3566776664221 11 112 346788775321 0
Q ss_pred --------------------------cccHHHHhhcCCCCCCC-HHHHHHHHHHcCchHHHHcCCCcccc-cccCCCCCC
Q 006489 486 --------------------------NCSIEENIAYGCDGKAS-SADIENAAKMANAHDFISNFPEKYQT-FVGERGVRL 537 (643)
Q Consensus 486 --------------------------~gTireNI~~~~~~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T-~vge~G~~L 537 (643)
+.|+.||+.++.. .. .++..++++.. |+.. .++....+|
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~~~~~~~~~~L~~l-----------gL~~~~l~~~~~~L 864 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--IAGVHRYLRTLVDV-----------GLGYVRLGQPAPTL 864 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--CHHHHHHHHHHHHT-----------TGGGSBTTCCGGGS
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--chHHHHHHHHHHHc-----------CCCcccccCccccC
Confidence 1255666666522 21 11222333333 3333 456777899
Q ss_pred CHHHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------
Q 006489 538 SGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------ 607 (643)
Q Consensus 538 SGGQrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------ 607 (643)
|||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|++|
T Consensus 865 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~ 944 (993)
T 2ygr_A 865 SGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGA 944 (993)
T ss_dssp CHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTT
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCC
Confidence 999999999999999875 9999999999999999999999998764 589999999999999999999999
Q ss_pred eCCEEEEEcChhHHhhcCChHHHHH
Q 006489 608 SDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 608 ~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
++|+|++.|+++++.+....|...+
T Consensus 945 ~~G~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 945 GGGTVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp SCSEEEEEECHHHHHHCTTCHHHHH
T ss_pred CCCEEEEecCHHHHHhCCHHHHHHH
Confidence 6899999999999987655554433
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=8.6e-29 Score=258.83 Aligned_cols=202 Identities=19% Similarity=0.222 Sum_probs=145.6
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC-----------------------------------------------
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFY----------------------------------------------- 449 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~----------------------------------------------- 449 (643)
++++++.+| .++|+|+||||||||+.+|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568888899 99999999999999999998442
Q ss_pred ---CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccHHHHhhcCCCCC---C-C--------HHHHHHHHHHc
Q 006489 450 ---DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGK---A-S--------SADIENAAKMA 513 (643)
Q Consensus 450 ---~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTireNI~~~~~~~---~-~--------~~~i~~al~~a 513 (643)
.+.+|.+++||.+++..+...+...+++.||+..++ .|++.+|+... |.+ + + ...+.++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999986656677777899999998866 89999999764 210 0 0 00111122210
Q ss_pred ---------------Cch-HHHHcCCCcccccccC------CCCCCCHHHHHHHHHHHHHc----cCCCEEEEecccCCC
Q 006489 514 ---------------NAH-DFISNFPEKYQTFVGE------RGVRLSGGQKQRVAIARALM----MNPRILLLDEATSAL 567 (643)
Q Consensus 514 ---------------~l~-~~i~~lp~G~~T~vge------~G~~LSGGQrQRialARAl~----~~p~IliLDE~TSaL 567 (643)
.+. +..+.++.|+++.+++ ....||||||||++|||||. ++|+++|||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 000 1123466677776542 34689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeE--EEEeCCEEE-EEcChhH
Q 006489 568 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTV--AVVSDGEIV-ESGTHEE 620 (643)
Q Consensus 568 D~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~I--ivl~~G~Iv-e~G~~~e 620 (643)
|+.+.+.+.+.|+++.+++|+|+|||+.+.+..||++ ++|++|+.. ...+-++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999887788999999999988999987 888888643 3334333
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=2.3e-30 Score=252.51 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=102.3
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
..+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++|+||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3588985 89999999999999999999999999 99999994 333321 2234678899999998 67
Q ss_pred Hh-hcCCC------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Q 006489 492 NI-AYGCD------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 564 (643)
Q Consensus 492 NI-~~~~~------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~T 564 (643)
|+ .++.+ ...+.+++.++ ++. |+ |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~---------l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKL---------MEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHH---------HHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH---------HHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 77 44310 00111122222 221 21 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 565 SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 565 SaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
|+ +.+.+.+.|+++.+++|+| |||+++.+.. +...++|.
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 99 8888889888774578999 9999986654 44556664
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=2.1e-30 Score=255.63 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=124.0
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcccEEEccCCCCCc-----
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKISIVSQEPVLFN----- 486 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~V~Q~~~Lf~----- 486 (643)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |+++...++ ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 5 99999 887754432 335678999999886664
Q ss_pred ------ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH-----HHHHccCC
Q 006489 487 ------CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI-----ARALMMNP 555 (643)
Q Consensus 487 ------gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial-----ARAl~~~p 555 (643)
+++++| .++. ++++++++++.... ..+. .+|||||+||++| ||+++++|
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 444555 3442 24566677665332 1111 6899999999999 99999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
++++|||||+++|.+++..|.+.+....+++| ++| +..||.|+|+++
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999999988777777 678 578999988765
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=4.3e-31 Score=276.15 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEE---------EE
Q 006489 331 SMTPGALTSFILYSLTVGSSVSGLSS-LYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVE---------LD 400 (643)
Q Consensus 331 ~lt~g~l~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~---------~~ 400 (643)
.+|.+.+.+++.+......| .+.. ....+..+..+..|+..+++.|................+.++ |+
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~~~~~~ir~~~~~~i~l~~l~~~g~~~ 152 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYN 152 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTTCCEEEEECCCCCCCCHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCCCceEEEeCCCCCCCCHHHHHhCCCcC
Confidence 58889988888776655443 1222 222222222334566655543221110000000000122355 66
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEcc
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q 480 (643)
+++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|+++|.+ ++....+++.+++++
T Consensus 153 ~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 153 LLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF- 223 (330)
T ss_dssp TSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC-
T ss_pred chhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe-
Confidence 7777 6 248999999999999999999999999999999999999999999999965 333333455555543
Q ss_pred CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 006489 481 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 560 (643)
Q Consensus 481 ~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliL 560 (643)
| |||+||++|||||.++|+++||
T Consensus 224 --------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 224 --------------------------------------------G-------------GNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp --------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEE
T ss_pred --------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEE
Confidence 0 8999999999999999999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHcCCC-eEEEEccCchhHhhcCeEEEEeCCE
Q 006489 561 DEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 561 DE~TSaLD~~te~~i~~~i~~~~~~~-TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
||||+. + +.+.++.+..++ |+|+++|+++..+.||+|++|++|+
T Consensus 247 dE~~~~---e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 247 GELRSS---E----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCCST---H----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred cCCChH---H----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 999992 2 345566555555 7999999999999999999999885
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.8e-27 Score=225.62 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=107.3
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC--CCcccHHHHhh
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV--LFNCSIEENIA 494 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf~gTireNI~ 494 (643)
|+||++++||.++|+||||||||||++++.+-+ .. ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965322 11 2233444 66777753 22333333321
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHH--
Q 006489 495 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE-- 572 (643)
Q Consensus 495 ~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te-- 572 (643)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~-------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 Y-------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp H-------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred H-------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1 00 112233555555443 34599999999999999999999999999999999954
Q ss_pred --------------HHHHHHHHHHc-CCCeEEEEccCchhHhhcCeE
Q 006489 573 --------------YLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 604 (643)
Q Consensus 573 --------------~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~I 604 (643)
+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777755432 489999999999999988775
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.2e-25 Score=238.49 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHHHHHHHHHc------cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEE
Q 006489 533 RGVRLSGGQKQRVAIARALM------MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVA 605 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Ii 605 (643)
...+||||||||++|||||. ++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++..+.||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 45579999999999999999 7999999999999999999999999998764 4799999999999999999999
Q ss_pred EEeCCEEEE
Q 006489 606 VVSDGEIVE 614 (643)
Q Consensus 606 vl~~G~Ive 614 (643)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=1.2e-27 Score=227.86 Aligned_cols=147 Identities=17% Similarity=0.221 Sum_probs=110.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 506 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i 506 (643)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ +..- .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-F------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET-T------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh-c------
Confidence 689999999999999999999985 678887765443225678999999987 333444 1100 0
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH-----HccCCCEEEEec--ccCCCCHHHHHHHHHHH
Q 006489 507 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA-----LMMNPRILLLDE--ATSALDAESEYLVQDAM 579 (643)
Q Consensus 507 ~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA-----l~~~p~IliLDE--~TSaLD~~te~~i~~~i 579 (643)
.+ .+..++..+.+||||||||++|||| ++.+|+++|||| ||++||+.+.+.+.+.+
T Consensus 64 ---------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 64 ---------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ---------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ---------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00 1145677788999999999999996 999999999999 99999999999999988
Q ss_pred HHHcCCCeEEEEcc---CchhHhh-cCeEEEEeCCEEEE
Q 006489 580 DSLMKGRTVLVIAH---RLSTVQS-ADTVAVVSDGEIVE 614 (643)
Q Consensus 580 ~~~~~~~TvI~VtH---rl~~i~~-aD~Iivl~~G~Ive 614 (643)
++ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 127 ~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 76 4677999996 6666653 666 5677776
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=1.3e-27 Score=258.23 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=158.6
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCE---eCCCCC----
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV---PLVEIS---- 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~---- 467 (643)
..++++|+++.|+. ...+|+++ |+|++||+++|+|+||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 24699999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhcccEEEccC-C-CCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 468 -HEHLHRKISIVSQE-P-VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 468 -~~~lr~~i~~V~Q~-~-~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
...+++.++||+|+ . ....-|+.+|+.+.. ++... +...+..++ +...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~~-~~~~v~~~l------------d~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFRD-RGQHVLLIM------------DSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHHT-TTCEEEEEE------------ECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHHh-CCCCHHHHH------------HhHHHHHHHH-HH
Confidence 35688899999995 3 344679999997741 22111 111111111 2356799999 99
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-----GR-----TVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-----~~-----TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
++|| +.+|++ |++||+.+...+.+.++++.+ ++ |++++||+++ .+.||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988754 43 9999999999 88899999999999999
Q ss_pred EcChhHHhh
Q 006489 615 SGTHEELLS 623 (643)
Q Consensus 615 ~G~~~eL~~ 623 (643)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988753
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.7e-26 Score=246.53 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=136.1
Q ss_pred CcceeceeEEeeCCC--------------------EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH
Q 006489 412 HMVLKGITLKLLSGS--------------------KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 412 ~~vL~~isl~i~~G~--------------------~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 471 (643)
+.+|+||||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH--HHHHHHHHH
Q 006489 472 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG--QKQRVAIAR 549 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG--QrQRialAR 549 (643)
| .+|++|++...+-|++||+.++.+ ++++.++++..++.+. +..+ . |||| ||||++|||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAK 169 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHH
Confidence 1 288999986557899999988743 2346777887776542 2222 2 8999 999999999
Q ss_pred HHcc----------CCCEEEEecccCCCCHHHHHHHHHHHHHHc----------CCCeEEEEccCchh--Hh-hcCeEE
Q 006489 550 ALMM----------NPRILLLDEATSALDAESEYLVQDAMDSLM----------KGRTVLVIAHRLST--VQ-SADTVA 605 (643)
Q Consensus 550 Al~~----------~p~IliLDE~TSaLD~~te~~i~~~i~~~~----------~~~TvI~VtHrl~~--i~-~aD~Ii 605 (643)
||.+ +||+++|||||++||+.+++.+.+.|+++. ..+++++.||.++- ++ -||+|.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999 999999999999999999999988887763 13567788998875 54 377774
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=9.5e-24 Score=242.59 Aligned_cols=95 Identities=29% Similarity=0.427 Sum_probs=87.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEE
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
.+..-.+|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++. .+.|+|+|+|+++.++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 45566799999999999999999999 4999999999999999999999888765 48999999999999999999999
Q ss_pred E------eCCEEEEEcChhHHhhc
Q 006489 607 V------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 607 l------~~G~Ive~G~~~eL~~~ 624 (643)
| ++|+++..|+++++.+.
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGC
T ss_pred eCCCcccCCCEEEEecCHHHHHhc
Confidence 9 79999999999999875
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=9.1e-26 Score=233.66 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=132.1
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEE-----------------------eeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLK-----------------------LLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.+.|+++||++.|. |+++++++. +++|+++||+|+||||||||+++|.|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45699999999993 577777765 89999999999999999999999999999
Q ss_pred CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC----CCCCCHHHHHHHHHHcCchHHHHcCCCcc
Q 006489 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC----DGKASSADIENAAKMANAHDFISNFPEKY 526 (643)
Q Consensus 451 p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~----~~~~~~~~i~~al~~a~l~~~i~~lp~G~ 526 (643)
|..|. .+++||+||+++++.|++||+.+.. +...+.+.+.+.++. +..|.
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~---------l~~~~ 169 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTS---------VKSGS 169 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHH---------HHTTC
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHH---------hCCCc
Confidence 98664 4799999999999889999997642 212233444444443 33333
Q ss_pred c-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH--hhcCe
Q 006489 527 Q-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV--QSADT 603 (643)
Q Consensus 527 ~-T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i--~~aD~ 603 (643)
. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+.. ..+.+.+ ..+|+|+|..+.. +..+|
T Consensus 170 ~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 170 DYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--DFSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp SCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--SEEEEEEECHHHHHHHHHHH
T ss_pred ccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--CcEEEEECCHHHHHHHHHHH
Confidence 2 333 4799999999999999999999999999999998632 1233332 3568888887664 34566
Q ss_pred EEEEeCC
Q 006489 604 VAVVSDG 610 (643)
Q Consensus 604 Iivl~~G 610 (643)
.+.+.+|
T Consensus 239 ~~~~rd~ 245 (312)
T 3aez_A 239 FLAMRTT 245 (312)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 6555554
No 78
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.88 E-value=1.8e-25 Score=210.72 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=89.7
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCCC---HHHHh-cccE----EEccCCCCCcccHHHHhh
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEIS---HEHLH-RKIS----IVSQEPVLFNCSIEENIA 494 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~---~~~lr-~~i~----~V~Q~~~Lf~gTireNI~ 494 (643)
++++|||+||||||||+++|+|+|+|. .|+|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 67888 5788 899999988 211
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHc-CCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 006489 495 YGCDGKASSADIENAAKMANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRIL 558 (643)
Q Consensus 495 ~~~~~~~~~~~i~~al~~a~l~~~i~~-lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~Il 558 (643)
+ ++ +. .++++++++. +| ||||.|+|+ |||||||||+||||++++|+|+
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 12 22 7899999999 99 999999995 9999999999999999999885
No 79
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=1.5e-24 Score=223.43 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=127.5
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCC-CC-cc
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPV-LF-NC 487 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf-~g 487 (643)
+++||++++|+.++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999886653 1234 457999999997 66 46
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccC
Q 006489 488 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATS 565 (643)
Q Consensus 488 TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TS 565 (643)
|++||+.++.....+ ...++.+++.+. .+..++ .|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d----~~lldt~gl~~~-------~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD----VVLCDTSGRLHT-------NYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS----EEEECCCCCSSC-------CHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc----chHHhcCCCCcc-------hhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 999999875211111 011222222211 112222 378 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEcc---------CchhHh-hcCeEEEEeCCEE
Q 006489 566 ALDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTVQ-SADTVAVVSDGEI 612 (643)
Q Consensus 566 aLD~~te~~i~~~i~~~~~~~TvI~VtH---------rl~~i~-~aD~Iivl~~G~I 612 (643)
++|+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 232 glD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 233322 4899999999 444443 4689999999964
No 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.88 E-value=4.9e-26 Score=229.93 Aligned_cols=183 Identities=20% Similarity=0.205 Sum_probs=151.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i 475 (643)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 456666642 4899999 9999999999999999999999999999998 999999998886543 4557
Q ss_pred EEEcc-----CCCCCcccHHHHhhcCCCCCC-------CHHHHHHHHHHcCc-----------------hHHH-------
Q 006489 476 SIVSQ-----EPVLFNCSIEENIAYGCDGKA-------SSADIENAAKMANA-----------------HDFI------- 519 (643)
Q Consensus 476 ~~V~Q-----~~~Lf~gTireNI~~~~~~~~-------~~~~i~~al~~a~l-----------------~~~i------- 519 (643)
++++| ++..|..+|+.++... | +. |.+.++++++.+.- +..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 88898 6777888999999874 3 34 77777777765431 1111
Q ss_pred -----HcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCE--EEEecccCCCCHHH---------HHHHHHHHHHHc
Q 006489 520 -----SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAES---------EYLVQDAMDSLM 583 (643)
Q Consensus 520 -----~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~I--liLDE~TSaLD~~t---------e~~i~~~i~~~~ 583 (643)
..+++++++.|++++..+||| ||+++||+++.+|+| +|+||+||++|... +..++++++...
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK 228 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH
Confidence 135678999999999999999 999999999999999 99999999999873 457888888888
Q ss_pred CCCeEEEEccCch
Q 006489 584 KGRTVLVIAHRLS 596 (643)
Q Consensus 584 ~~~TvI~VtHrl~ 596 (643)
+|+|.+.++||++
T Consensus 229 ~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 229 QGLITLEDAMEAS 241 (261)
T ss_dssp TTSSCHHHHHHHC
T ss_pred cCCCCHHHHHHHh
Confidence 9999999999987
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=6.3e-25 Score=222.94 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=97.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc-cHHHHhhcCCCCC--CCH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGCDGK--ASS 503 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~~~~--~~~ 503 (643)
.++||||||||||||+++|+|++.|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.|+.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456789999999998864 9999999985311 112
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 006489 504 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583 (643)
Q Consensus 504 ~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~ 583 (643)
+.+.+.+. .++...++ ..||||||||+++|||+.. +|+|||||++||+... .+.+.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---
Confidence 23444433 23333322 2589999999999999875 9999999999999863 3333443
Q ss_pred CCCeEEEEccCchhHh
Q 006489 584 KGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 584 ~~~TvI~VtHrl~~i~ 599 (643)
+.+++|+|.|+.+++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987664
No 82
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.87 E-value=5.9e-26 Score=241.15 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=148.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhcccEEEcc-----CCCCCc
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKISIVSQ-----EPVLFN 486 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q-----~~~Lf~ 486 (643)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .+++.++||+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4577765 8899999999999999999999999999998 899988776654 2 36788999999 899999
Q ss_pred ccHHHHhhcCCCCCC-------CHHHHHHHHHHcCch-----------------HHH------------HcCCCcccccc
Q 006489 487 CSIEENIAYGCDGKA-------SSADIENAAKMANAH-----------------DFI------------SNFPEKYQTFV 530 (643)
Q Consensus 487 gTireNI~~~~~~~~-------~~~~i~~al~~a~l~-----------------~~i------------~~lp~G~~T~v 530 (643)
++|++|++.. | +. +++.++.+++.++.. ..+ ..+|+++++.|
T Consensus 200 ~~l~~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999984 4 45 778888888877542 111 12467999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCE--EEEecccCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 531 GERGVRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAE----S-----EYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 531 ge~G~~LSGGQrQRialARAl~~~p~I--liLDE~TSaLD~~----t-----e~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
++++..+||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++...+|+|.+.++||++.
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999999999 999999999999999 9999999999975 3 45678888888899999999999984
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=2.8e-22 Score=210.69 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEE
Q 006489 536 RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 536 ~LSGGQrQRialARAl~---------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
.|||||+||++|||+|. .+|+|||||||||+||+...+.+.+.+.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998863 89999999 454 8999999
Q ss_pred EeCCEEEEEcChhHH
Q 006489 607 VSDGEIVESGTHEEL 621 (643)
Q Consensus 607 l~~G~Ive~G~~~eL 621 (643)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.4e-23 Score=220.13 Aligned_cols=172 Identities=18% Similarity=0.215 Sum_probs=128.0
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCC-CC-ccc
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPV-LF-NCS 488 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf-~gT 488 (643)
++||++++|+.++|||+|||||||+++.|+|+++|.+|+|.++|.|+.... ...+ |..|+|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999886543 1233 567999999987 65 579
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSA 566 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TSa 566 (643)
++|||.++.....+ ...++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 229 v~e~l~~~~~~~~d----~~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 229 LSKAVKRGKEEGYD----VVLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHTTCS----EEEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHhCCCH----HHHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 99999875211111 011222222211 11122 2377 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEcc---------CchhH-hhcCeEEEEeCCE
Q 006489 567 LDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTV-QSADTVAVVSDGE 611 (643)
Q Consensus 567 LD~~te~~i~~~i~~~~~~~TvI~VtH---------rl~~i-~~aD~Iivl~~G~ 611 (643)
+|+.+.. +.+.+. .+.|+|++|| .++.+ ...+.|..+..|+
T Consensus 290 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 290 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9998653 223322 3799999999 34444 3468999999995
No 85
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.86 E-value=6.1e-25 Score=213.21 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=133.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccH
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSI 489 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTi 489 (643)
++|+.++||||||||||||+++|+|+++ |..|+ ++|+++..++.+.+++.+ +|++++|++|+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78898 599999999999999887 79999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH-HHccCCCEEEEecccCCCC
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR-ALMMNPRILLLDEATSALD 568 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR-Al~~~p~IliLDE~TSaLD 568 (643)
++|+ +|. ++++++++++.....-+ ...|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 77 ~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 77 SGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp TTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred cCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 9998 762 57889999986433221 2357788776432 22 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 569 AESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 569 ~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
.++|+.|++.|....++ +.++| ++ ..+|+|+|+++ -..++++|.+
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 99999999999876544 46778 45 88999999875 1345555543
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=3.7e-24 Score=209.25 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcccEEEccCCCCCc-cc
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRKISIVSQEPVLFN-CS 488 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i~~V~Q~~~Lf~-gT 488 (643)
..++++| .+|++|++++|+||||||||||+++|+|+++. |.+++ ++...+ ....++.++|++|++.+|. -|
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcc-cccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3578888 79999999999999999999999999999963 44443 221111 1224678999999998875 46
Q ss_pred HHHHhhcCC-------CCCCCHHHHHHHHHH----------cCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 489 IEENIAYGC-------DGKASSADIENAAKM----------ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 489 ireNI~~~~-------~~~~~~~~i~~al~~----------a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+++|+.... ....+.+++.+.++. .++.+.....|. .|| ||
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l 138 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VF 138 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EE
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EE
Confidence 666663210 001223344443332 333333333332 233 89
Q ss_pred ccCCCEEEEecccCCC----CHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeC
Q 006489 552 MMNPRILLLDEATSAL----DAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD 609 (643)
Q Consensus 552 ~~~p~IliLDE~TSaL----D~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~ 609 (643)
+.+|++++|||||+++ |+...+.+.+.++++. .++|+|+|||+++.+. .||+|++|..
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999999999999998 6778888988887764 3789999999999875 5999999843
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.85 E-value=9.5e-24 Score=202.56 Aligned_cols=172 Identities=15% Similarity=0.214 Sum_probs=128.9
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHH
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSA 504 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~ 504 (643)
|++++|+|+||||||||+++|+|+++ ++| |.+||.++.++. .++++++|++|+. +++ ++|+..... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~-~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL-EPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC-CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc-cCC--
Confidence 78999999999999999999999999 999 999999986654 4789999999986 443 333321100 000
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH-HHHH---HHccCCCEEEEec--ccCCCCHHHHHHHHHH
Q 006489 505 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV-AIAR---ALMMNPRILLLDE--ATSALDAESEYLVQDA 578 (643)
Q Consensus 505 ~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi-alAR---Al~~~p~IliLDE--~TSaLD~~te~~i~~~ 578 (643)
+...+..+|+.+..+|||||+++ +++| |+.++|+|+|||| ||..+|....+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 11133488999999999999999 5566 7899999999999 8988999877777776
Q ss_pred HHHHcCCCeEEE----EccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHH
Q 006489 579 MDSLMKGRTVLV----IAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 579 i~~~~~~~TvI~----VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 633 (643)
+.+ .+|+|+ |+||.+ ...+|+|..+++|+|++-... +++..|.++++
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 653 456553 349886 567888989999999975321 23444555554
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.84 E-value=8.6e-23 Score=214.14 Aligned_cols=193 Identities=17% Similarity=0.187 Sum_probs=149.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC-------CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE-------ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-------~~~ 468 (643)
.++.+++++.|+. ...+|+++ |+|.+||+++|+|+||||||||+++|+|+++|+.|.|.++|.+.++ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4889999999973 34699999 9999999999999999999999999999999999999999965322 122
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccc-cCCCCCCCHHHHHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV-GERGVRLSGGQKQRVAI 547 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~v-ge~G~~LSGGQrQRial 547 (643)
..+++.+.+++|... ...+++..+...+.+.++... .|.+..+ -+.-.+||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~-----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS-----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 334455666665321 113455555555555555433 2333221 13456899999 99999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEccCchhHhhcCeEEEEeCCEEEEEcChh
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~---~~~-----TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~ 619 (643)
| +.+|++ |+++|+.....+.+.+++.. +|. |++++||+++ -.-||++++|.+|+|+..|+..
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998775 366 9999999999 6779999999999999999887
Q ss_pred HH
Q 006489 620 EL 621 (643)
Q Consensus 620 eL 621 (643)
++
T Consensus 252 ~~ 253 (347)
T 2obl_A 252 EE 253 (347)
T ss_dssp TT
T ss_pred Hc
Confidence 75
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=6.9e-22 Score=229.01 Aligned_cols=161 Identities=22% Similarity=0.343 Sum_probs=118.2
Q ss_pred HHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCC------HHHHHHHHHHcCc
Q 006489 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS------SADIENAAKMANA 515 (643)
Q Consensus 442 l~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~------~~~i~~al~~a~l 515 (643)
..|..+.+.|..|+|+++|++|.++.. -|+.+|+.+......+ -.++.+..+. .
T Consensus 385 ~~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~ 444 (916)
T 3pih_A 385 SVCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIEK--R 444 (916)
T ss_dssp TTTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH--H
T ss_pred hhcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH--H
Confidence 345556778999999999998755433 3444444432110011 1111111111 1
Q ss_pred hHHHHcCCCccccc-ccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEE
Q 006489 516 HDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVI 591 (643)
Q Consensus 516 ~~~i~~lp~G~~T~-vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~V 591 (643)
.+++..+ |++.. ......+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. .++|+|+|
T Consensus 445 ~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 445 LEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1234333 34322 345567899999999999999999887 999999999999999999999998875 47899999
Q ss_pred ccCchhHhhcCeEEEE------eCCEEEEEcChhHHhhc
Q 006489 592 AHRLSTVQSADTVAVV------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 592 tHrl~~i~~aD~Iivl------~~G~Ive~G~~~eL~~~ 624 (643)
+|+++.+..||+|++| ++|+|+..|+++++++.
T Consensus 523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9999999999999999 89999999999999875
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=3.1e-21 Score=199.18 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=125.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
++|+++++.+++|+.++|+|+||||||||++.|++.+.|.+| .|.+.+.+ .+...+++++.++.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999888 77665433 4566777776666655432 3345
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH-HHHHHHHHHHccCCCEEEEecccC---C-
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ-KQRVAIARALMMNPRILLLDEATS---A- 566 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ-rQRialARAl~~~p~IliLDE~TS---a- 566 (643)
|+..+ ..+++++.++++. .++..+-+ +.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 55443 1233344443332 12222222 223334689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHc--CCCeEEEEccCc--h--------------------hH-hhcCeEEEEeCCEE
Q 006489 567 --LDA-ESEYLVQDAMDSLM--KGRTVLVIAHRL--S--------------------TV-QSADTVAVVSDGEI 612 (643)
Q Consensus 567 --LD~-~te~~i~~~i~~~~--~~~TvI~VtHrl--~--------------------~i-~~aD~Iivl~~G~I 612 (643)
+|. .....+.+.|+++. .++|+|+++|.. + .+ ..||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45566777776654 389999999995 3 34 57999999999875
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=4.1e-23 Score=202.21 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=114.3
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc---cHHHHhhc--C
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC---SIEENIAY--G 496 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---TireNI~~--~ 496 (643)
.++|++++|+|+||||||||+++|.|++.| +++|++||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 68999999998853 67776544 3
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCC-------CCH
Q 006489 497 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA-------LDA 569 (643)
Q Consensus 497 ~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSa-------LD~ 569 (643)
.+...+.+++.++++..++.+.+.. | .+++..|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 3334566778888888777665544 4 44444444332 56899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH--cCCCeEEEEccCc
Q 006489 570 ESEYLVQDAMDSL--MKGRTVLVIAHRL 595 (643)
Q Consensus 570 ~te~~i~~~i~~~--~~~~TvI~VtHrl 595 (643)
.++..+.+.+.+. .+++|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988764 2589999999984
No 92
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.82 E-value=3.2e-25 Score=234.88 Aligned_cols=224 Identities=11% Similarity=-0.026 Sum_probs=156.1
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC-CCCCCCc
Q 006489 319 VVIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCP-LGDQDGE 396 (643)
Q Consensus 319 ~~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~-~~~~~~~ 396 (643)
+.+.|.+.+.. +.+|.+.+.+++.+...+..| .+......+..+..+..|+..++ ++.......... .....+.
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34456666665 789999999998887766554 23222223333334456776666 222111100000 0001233
Q ss_pred E---------EEEeEEEE---CCCCCCCcce---------eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 397 V---------ELDDVWFA---YPSRPNHMVL---------KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 397 I---------~~~~vsf~---Y~~~~~~~vL---------~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
+ +|+||+|+ |++. +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 89999999 8642 23455 9999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEc-cCCCC---CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 006489 456 ILLNGVPLVEISHEHLHRKISIVS-QEPVL---FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG 531 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~i~~V~-Q~~~L---f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg 531 (643)
|+++|. .++....+|+.++|++ |++.+ +..|+++||..+.. ..++..+...++.+++.++++.+|.|++|.++
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 999984 5666666788999999 99886 88999999998754 23333344445556677899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 006489 532 ERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 532 e~G~~LSGGQrQRialARA 550 (643)
+-+.+-+.+..+|+.....
T Consensus 283 t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 283 SCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEECSSHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 9888889999999988765
No 93
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.81 E-value=1.9e-22 Score=214.37 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=109.3
Q ss_pred ceeceeEEeeC--CCEEEEECCCCChHHHHHHHHHcCCCCCC----CEEEE----CCEeCCCCCHHHHhcccEEEccCCC
Q 006489 414 VLKGITLKLLS--GSKIALVGPSGGGKSTIANLIERFYDPIK----GKILL----NGVPLVEISHEHLHRKISIVSQEPV 483 (643)
Q Consensus 414 vL~~isl~i~~--G~~vaivG~sGsGKSTLl~lL~g~~~p~~----G~I~i----dg~~i~~~~~~~lr~~i~~V~Q~~~ 483 (643)
+.+.|++++++ |++++|+|+||||||||+++|+|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 46665 5566666 56999999999
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc--cccc--------ccCCCCCCCHHHHHHHHHHHHH--
Q 006489 484 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK--YQTF--------VGERGVRLSGGQKQRVAIARAL-- 551 (643)
Q Consensus 484 Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G--~~T~--------vge~G~~LSGGQrQRialARAl-- 551 (643)
+|++|++|||.+++. +..+..............++..++.+ ++.. ..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 999999999999854 44455555555555666666666544 3332 2266778888888888888888
Q ss_pred -cc--CCCEEEEeccc
Q 006489 552 -MM--NPRILLLDEAT 564 (643)
Q Consensus 552 -~~--~p~IliLDE~T 564 (643)
++ +++|+++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 66 78888888886
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=2.1e-22 Score=224.11 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=119.5
Q ss_pred CcceeceeE-EeeCCCEEEEECCCCChHHHHHHH--HHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCccc
Q 006489 412 HMVLKGITL-KLLSGSKIALVGPSGGGKSTIANL--IERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS 488 (643)
Q Consensus 412 ~~vL~~isl-~i~~G~~vaivG~sGsGKSTLl~l--L~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT 488 (643)
.++|+++|| .+++|+.++|+|+||||||||+++ +.|+++|.+|.|+++|.+. ..+....+++++|++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 579999999 999999999999999999999999 6899999999999999872 223445667899999997631
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc-cCCCEEEEecccCC-
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-MNPRILLLDEATSA- 566 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~-~~p~IliLDE~TSa- 566 (643)
+|+.+....+ + ++.+++++..++.+ +.-.++++|- .+|++++|||||+.
T Consensus 101 --~~l~~~~~~~-~-~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~t~~~ 151 (525)
T 1tf7_A 101 --GKLFILDASP-D-PEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSVTSVF 151 (525)
T ss_dssp --TSEEEEECCC-C-SSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred --CcEEEEecCc-c-cchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 2332221101 0 00011111122222 2233334442 46889999999985
Q ss_pred ----CCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH---------hh-cCeEEEEeCC
Q 006489 567 ----LDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV---------QS-ADTVAVVSDG 610 (643)
Q Consensus 567 ----LD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i---------~~-aD~Iivl~~G 610 (643)
+|+...+.+.+.++.+. .++|+|+|+|+++.+ .. ||+|++|++|
T Consensus 152 ~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 152 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58898888888887653 489999999999874 44 9999999983
No 95
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=8.5e-20 Score=202.76 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=71.3
Q ss_pred CCC-CHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCC
Q 006489 535 VRL-SGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 610 (643)
Q Consensus 535 ~~L-SGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G 610 (643)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|+++
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999999999999654
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=4.8e-20 Score=217.29 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=123.0
Q ss_pred CcEEEEe-----EEEECCCCCCCcceeceeEEeeC-------CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe
Q 006489 395 GEVELDD-----VWFAYPSRPNHMVLKGITLKLLS-------GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 462 (643)
Q Consensus 395 ~~I~~~~-----vsf~Y~~~~~~~vL~~isl~i~~-------G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~ 462 (643)
..|+++| +++.|++ ..++++|++|++++ |+.++|+||||||||||++++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 34799999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcccE-EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 463 LVEISHEHLHRKIS-IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 463 i~~~~~~~lr~~i~-~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..+++ ||||++. .-|+.|||... . ++.+.+. .|. ..+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r----i------------g~~d~~~---~~~--------stf~~em 856 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR----L------------GASDRIM---SGE--------STFFVEL 856 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE----C------------C--------------------CHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH----c------------CCHHHHh---hch--------hhhHHHH
Confidence 23566 9999983 66777887421 1 1112211 122 3567777
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEccCchhHhh-cCeEEEEeCCEEE--EE
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAES-EYLVQDAMDSLM-K-GRTVLVIAHRLSTVQS-ADTVAVVSDGEIV--ES 615 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~t-e~~i~~~i~~~~-~-~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv--e~ 615 (643)
++ +++||++..+|+++||||||+++|+.. ...+.+.++.+. + ++|+|++||.++.+.. ||++.|+ +|+++ +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 65 999999999999999999999999985 566677776654 3 8999999999998865 8999887 58887 55
Q ss_pred cCh
Q 006489 616 GTH 618 (643)
Q Consensus 616 G~~ 618 (643)
|+.
T Consensus 935 ~~~ 937 (1022)
T 2o8b_B 935 NEC 937 (1022)
T ss_dssp ---
T ss_pred cCc
Confidence 544
No 97
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=6.1e-19 Score=185.36 Aligned_cols=78 Identities=31% Similarity=0.404 Sum_probs=69.5
Q ss_pred CCCCCHHHHH------HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEE
Q 006489 534 GVRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 534 G~~LSGGQrQ------RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
-..||||||| |+++|||+..+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998764 46799999999988889999999
Q ss_pred Ee--CCE
Q 006489 607 VS--DGE 611 (643)
Q Consensus 607 l~--~G~ 611 (643)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 85 454
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=5.5e-20 Score=211.51 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=115.9
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHH-------HHHHHHHcCchHHHHc
Q 006489 449 YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD-------IENAAKMANAHDFISN 521 (643)
Q Consensus 449 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~-------i~~al~~a~l~~~i~~ 521 (643)
+.|....|+|+|++|.+ +.+.||.|++.|...-..+.++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 46677889999976543 3467888888886332233311 11222221 12222
Q ss_pred CCCccccc-ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh
Q 006489 522 FPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST 597 (643)
Q Consensus 522 lp~G~~T~-vge~G~~LSGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~ 597 (643)
+ |++.. ....-.+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++.
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2 33322 34456789999999999999999985 9999999999999999889999998875 48999999999999
Q ss_pred HhhcCeEEEE------eCCEEEEEcChhHHhhc
Q 006489 598 VQSADTVAVV------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 598 i~~aD~Iivl------~~G~Ive~G~~~eL~~~ 624 (643)
++.||+|++| ++|+|+..|+++++++.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999999864
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=4.8e-21 Score=192.17 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
..++|+|+||++++|+++||+||||||||||+++|.|++ |.+.+| ..++.++|++|+++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 666655 367889999999744456999
Q ss_pred HHhhcCCC-------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Q 006489 491 ENIAYGCD-------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 563 (643)
Q Consensus 491 eNI~~~~~-------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~ 563 (643)
+|+.+... ...+.+++.+.++. +.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 99865321 01223333333332 223333333 4789999999988 688999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch-hHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 564 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS-TVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 564 TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~-~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
....|.. +.+. .+.|++++||... ..+. ++.+ ++|+ +.+++.+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8887764 2222 3889999999743 3343 3334 6674 6667654
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.77 E-value=1.8e-19 Score=206.25 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=114.7
Q ss_pred CCcEEEEeEEEECCCC--CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-CCCCEEEECCEeCCCCCHHH
Q 006489 394 DGEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~~~ 470 (643)
.+.|+++++ ++|-- .+.++++|+||+ |+.++|+||||||||||+++++|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 356999988 45531 135799999999 99999999999999999999999874 6778753 1 1
Q ss_pred HhcccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 471 LHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
.+..+++++| +|. -|+.||+..+ +|+|++|++.+|+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g----------------------------------------~S~~~~e~~~la~ 648 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG----------------------------------------KSTFMVEMEEVAL 648 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C----------------------------------------CSHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc----------------------------------------ccHHHHHHHHHHH
Confidence 2456888887 554 3666666432 4889999999999
Q ss_pred HH--ccCCCEEEEecc---cCCCCHHHH-HHHHHHHHHHcCCCeEEEEccCchhHhhc
Q 006489 550 AL--MMNPRILLLDEA---TSALDAESE-YLVQDAMDSLMKGRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 550 Al--~~~p~IliLDE~---TSaLD~~te-~~i~~~i~~~~~~~TvI~VtHrl~~i~~a 601 (643)
++ +.+|+++||||| ||++|..+. ..+.+.+.+ .++|+|++||..+....|
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99 999999999999 999999865 578888877 589999999999887655
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=2.3e-19 Score=199.65 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=115.8
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD 498 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~ 498 (643)
+..+++|+.++|+|+||||||||++.++|...|. |+ +.+.+++|++. .++++|....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc--
Confidence 4489999999999999999999999999998874 53 12456677762 4666666322
Q ss_pred CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH-----HHH
Q 006489 499 GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE-----SEY 573 (643)
Q Consensus 499 ~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~-----te~ 573 (643)
..+.+++ ...++ ..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 332 -g~~~~~~----~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 332 -GMDFEEM----ERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp -SCCHHHH----HHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred -CCCHHHH----HhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 1232221 11222 22222334679999999999999999999999999 99999998 788
Q ss_pred HHHHHHHHHc-CCCeEEEEccCc----------hhHh-hcCeEEEEeCCE
Q 006489 574 LVQDAMDSLM-KGRTVLVIAHRL----------STVQ-SADTVAVVSDGE 611 (643)
Q Consensus 574 ~i~~~i~~~~-~~~TvI~VtHrl----------~~i~-~aD~Iivl~~G~ 611 (643)
.+.+.++.+. .++|+|+|+|.. ..+. .||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8777776553 589999999998 5554 599999999886
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=7.8e-19 Score=161.10 Aligned_cols=88 Identities=28% Similarity=0.366 Sum_probs=76.4
Q ss_pred cccccc-----cCCCCCCCHHHHHHHHHH------HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEc
Q 006489 525 KYQTFV-----GERGVRLSGGQKQRVAIA------RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 592 (643)
Q Consensus 525 G~~T~v-----ge~G~~LSGGQrQRialA------RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~Vt 592 (643)
+|++.+ .....+||||||||++|| ||++++|+++||||||++||+++...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677665 234578999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchhHhhcCeEEEE--eCCEE
Q 006489 593 HRLSTVQSADTVAVV--SDGEI 612 (643)
Q Consensus 593 Hrl~~i~~aD~Iivl--~~G~I 612 (643)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999877889999999 56643
No 103
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=1.7e-18 Score=201.59 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=120.3
Q ss_pred CcEEEEeEEEECCCC--CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHH--------HcCCCCCCCEEEECCEeCC
Q 006489 395 GEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI--------ERFYDPIKGKILLNGVPLV 464 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL--------~g~~~p~~G~I~idg~~i~ 464 (643)
+.|++++...-+-.. ....+++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888875444221 135799999999999999999999999999999999 66655544321
Q ss_pred CCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 465 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 465 ~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
++.+. .+|. .++ +.+.+ -..+|+|++++
T Consensus 702 ----------~~~~d---~i~~-------~ig------------------~~d~l--------------~~~lStf~~e~ 729 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG------------------AGDSQ--------------LKGVSTFMAEM 729 (934)
T ss_dssp ----------EECCS---EEEE-------ECC-----------------------------------------CHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC------------------chhhH--------------HHhHhhhHHHH
Confidence 11100 0110 011 11111 13468888888
Q ss_pred HHHHHHH--ccCCCEEEEecccCCCCHHHHHHH-HHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChh
Q 006489 545 VAIARAL--MMNPRILLLDEATSALDAESEYLV-QDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 545 ialARAl--~~~p~IliLDE~TSaLD~~te~~i-~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~ 619 (643)
..+|+++ +.+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.+
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8888888 899999999999999999866666 44444443 389999999999999999999999999999888776
Q ss_pred HH
Q 006489 620 EL 621 (643)
Q Consensus 620 eL 621 (643)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.4e-18 Score=200.73 Aligned_cols=137 Identities=23% Similarity=0.355 Sum_probs=105.5
Q ss_pred CCCcccHHHHhhcCCCCCCCHHH--H-----HHHHHHcCchHHHHcCCCccccc-ccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 483 VLFNCSIEENIAYGCDGKASSAD--I-----ENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 483 ~Lf~gTireNI~~~~~~~~~~~~--i-----~~al~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQrQRialARAl~~~ 554 (643)
.+++.||.|++.|...-..+.++ + .+..+.. +++..+ |++.. ....-.+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 35678999999997432334411 0 1111111 122222 34322 3455678999999999999999998
Q ss_pred --CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------eCCEEEEEcChhHHhhc
Q 006489 555 --PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 555 --p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~~G~Ive~G~~~eL~~~ 624 (643)
|++|||||||++||+...+.+.+.|+++. .|+|+|+|+|++++++.||+|++| ++|+|+..|+++++.+.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 59999999999999999889998888764 589999999999999999999999 69999999999999875
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=2.3e-20 Score=196.57 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=122.6
Q ss_pred cceece-eEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CCCC----CE-EEECCEeCCCCCHHHHhcccEEEccCCCC
Q 006489 413 MVLKGI-TLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIK----GK-ILLNGVPLVEISHEHLHRKISIVSQEPVL 484 (643)
Q Consensus 413 ~vL~~i-sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p~~----G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~L 484 (643)
+.|+++ ++.+++|+.++|+||+|||||||++.+++.+ +|++ |. |+||+.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 346665 6899999999999999999999999999998 6666 67 999997641 25678999999999
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc-------cCCCE
Q 006489 485 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRI 557 (643)
Q Consensus 485 f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~-------~~p~I 557 (643)
+..|+.|||.+... .+ |++|+|++.++++++ .+|++
T Consensus 192 ~~~~v~~ni~~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp CHHHHGGGEEEEEC--CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred CHHHHhhCEEEEec--CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 98899999988732 22 456888888888888 68999
Q ss_pred EEEecccCCCCHHH------------HHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHh
Q 006489 558 LLLDEATSALDAES------------EYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 558 liLDE~TSaLD~~t------------e~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|+||||+.+|++. -..+...|.++. .++|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999999863 133444444433 38999999998775432 2446677889888888877764
No 106
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=1.2e-18 Score=189.09 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhhcCeEEEEe
Q 006489 536 RLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVS 608 (643)
Q Consensus 536 ~LSGGQrQRialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~aD~Iivl~ 608 (643)
.||||||||++|||+|. ++||++|||||||+||+.....+.+.|.+... +.++|+|||+..++..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 679999999999999999999985
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=6.4e-19 Score=174.33 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=103.5
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCC-------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDP-------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 493 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI 493 (643)
.+++|+.++|+||||||||||+++|+|.+.| ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445888888542 11 2357788888888888999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEecccCC
Q 006489 494 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRILLLDEATSA 566 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~-------~~p~IliLDE~TSa 566 (643)
.+... .+..+ |++++..+++++ .+|++++|||||+.
T Consensus 95 ~~~~~--~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 95 YVARA--FNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp EEEEC--CSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred EEEec--CChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 88633 22211 222233333333 48999999999999
Q ss_pred CCHH-------HH-----HHHHHHHHHHc--CCCeEEEEcc----CchhHh-hcCeEEEEeCC
Q 006489 567 LDAE-------SE-----YLVQDAMDSLM--KGRTVLVIAH----RLSTVQ-SADTVAVVSDG 610 (643)
Q Consensus 567 LD~~-------te-----~~i~~~i~~~~--~~~TvI~VtH----rl~~i~-~aD~Iivl~~G 610 (643)
+|++ .+ ..+.+.+.++. .++|+|+||| ....+. .||++++|++|
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9984 22 24555555443 3899999999 444464 58999999875
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=4.2e-20 Score=180.23 Aligned_cols=169 Identities=16% Similarity=0.192 Sum_probs=105.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC-----CCCCCEEEE-------CCEeCC
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILL-------NGVPLV 464 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~-----~p~~G~I~i-------dg~~i~ 464 (643)
|+++|++|+|+ .+++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|++.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 889999999999999999999999999998 888898765 233222
Q ss_pred ---CCC--------HHHHhcccEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 006489 465 ---EIS--------HEHLHRKISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532 (643)
Q Consensus 465 ---~~~--------~~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge 532 (643)
.+. .+.+++.++++.|+...+++ ++..|+..+. ...++++.+.++.. .+|. ..++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~-------~~~~---~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDS-------NIAV---LVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHHT-------TCCE---EEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHHc-------CCCe---EEEEe
Confidence 111 13455566666665443333 3333333321 11122343333322 2221 12344
Q ss_pred CCCCCCHHHHHH-HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 006489 533 RGVRLSGGQKQR-VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583 (643)
Q Consensus 533 ~G~~LSGGQrQR-ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~ 583 (643)
+--.+|+||||| +..||+++++|+++++||||||+|..+...+.+.|.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 444689999999 899999999999999999999999998888888887754
No 109
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=8.5e-20 Score=183.08 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=110.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH--cCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE--RFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
++++++++.|+.- + .++.+ .|++|+.++|+||||||||||+++|+ ++.++.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5667777777532 1 23333 68999999999999999999999999 7756778888887743221 12234466
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+++++|+...+. -++.++...... ....+..... ...+-++.++...+..-..
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVG--LPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC---------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred cCCChHHHhhcCCEEEEEccccccc--cccccceecc------------------------CcccHHHHHHHHHHHHHhh
Confidence 888888754331 233333221100 0000000000 0112334444334433457
Q ss_pred CCCEEEEecccCCCC-----HHHHHHHHHHHHHHc-CCCeEEEEccCchhH----------hhc-CeEEEEeC
Q 006489 554 NPRILLLDEATSALD-----AESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSA-DTVAVVSD 609 (643)
Q Consensus 554 ~p~IliLDE~TSaLD-----~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i----------~~a-D~Iivl~~ 609 (643)
+|++++|||||+.+| +...+.+.+.++.+. .++|+|+|||.++.. ..| |+|++|++
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999999997 556666777665543 489999999999886 567 99999953
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=1.8e-20 Score=211.29 Aligned_cols=190 Identities=18% Similarity=0.315 Sum_probs=123.7
Q ss_pred cEEEEeEEEECCCCCCCcceece----------eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCC
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGI----------TLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLV 464 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~ 464 (643)
.++++|+++.|+.. ..++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48999999999643 23455444 366765 999999999999999999999988 7999999999963
Q ss_pred C--C-CHHHHhcccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 465 E--I-SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 465 ~--~-~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
. . ....+|..|+|++|++.+++ .||+|||.+... . +.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~----------~---------~~~-----------~~~~~s-- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN----------A---------IAG-----------EGMGIS-- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH----------H---------HHC-----------SSSCCC--
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH----------H---------hcC-----------Cccccc--
Confidence 2 1 24568899999999998875 699999865310 0 000 011111
Q ss_pred HHHHHHHHHHHccCCCEEEEecc------cCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchh--------Hhh---
Q 006489 541 QKQRVAIARALMMNPRILLLDEA------TSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLST--------VQS--- 600 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~------TSaLD~~te~~i~~~i~~~~~---~~TvI~VtHrl~~--------i~~--- 600 (643)
++++.++.+...+|+++++||| |++||+.+++.+.+.++++.+ +.++++++|.+.. ++.
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2445555556678999999999 999999999999999988643 4578889999763 222
Q ss_pred --cCeEEEEeCCEEEEEcChhHHh
Q 006489 601 --ADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 601 --aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
...|+|+.++.+++.|+.+++.
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 3568999999999888876543
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=5.1e-19 Score=185.97 Aligned_cols=147 Identities=23% Similarity=0.292 Sum_probs=109.8
Q ss_pred EeEEEECCCCCCCcceeceeE-------EeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHH
Q 006489 400 DDVWFAYPSRPNHMVLKGITL-------KLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 400 ~~vsf~Y~~~~~~~vL~~isl-------~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~l 471 (643)
.+++++|.+. ..+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5778888654 4567888776 67889999999999999999999999999987 57765544332 332 2
Q ss_pred hcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 472 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+...++++|.+.-.. ..+-.+ +|||||
T Consensus 167 ~~~~~~v~q~~~~~~-------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------BSCHHH----------------------------------------HHHHHT
T ss_pred hccccceeeeeeccc-------------cCCHHH----------------------------------------HHHHHh
Confidence 344566766543110 111111 999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCC
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 610 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G 610 (643)
..+||++++|||| |.++...+.++. ..|+|+++++|..+.+..+||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 787766555543 3599999999999999999999988543
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.73 E-value=2e-20 Score=191.49 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=96.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCC--
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK-- 500 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~-- 500 (643)
+++.+|+|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 367899999999999999999999999763 2 0 1 44566779999999999999998763200
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCccccc------ccCCCCCCCHHHHHHHHHH--HHHccCCCEEEEecccCCCCHHH
Q 006489 501 ASSADIENAAKMANAHDFISNFPEKYQTF------VGERGVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAES 571 (643)
Q Consensus 501 ~~~~~i~~al~~a~l~~~i~~lp~G~~T~------vge~G~~LSGGQrQRialA--RAl~~~p~IliLDE~TSaLD~~t 571 (643)
.+.....++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000112222345667899999998764 5567889999999999998 666 999999999999999864
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.8e-19 Score=191.49 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=102.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++|++++|+. .++++|+||+| +|||+||||||||+++|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999964 46999999998 99999999999999999999876655 234333211 1112457
Q ss_pred cEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+++++|++.++ .-||.||+.++.. .+.++.++.+ .+++.. .++.+.+||++||||+++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 99999998887 6799999998843 2222222221 123321 234566789999999999
Q ss_pred CCC---EEEEeccc-CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH
Q 006489 554 NPR---ILLLDEAT-SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 598 (643)
Q Consensus 554 ~p~---IliLDE~T-SaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i 598 (643)
+|+ ++++|||| ++||+.... + ++.+..+.++|+|.|..+.+
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~~-~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDIE-F---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHHH-H---HHHHTTTSEEEEEEESTTSS
T ss_pred CCCeeEEEEEecCcccCCCHHHHH-H---HHHHhccCcEEEEEEcccCc
Confidence 999 99999999 589987642 2 33334578999999988764
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=1.9e-18 Score=177.97 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=103.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCCCCc-ccHHHHhhcC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPVLFN-CSIEENIAYG 496 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~Lf~-gTireNI~~~ 496 (643)
+|++++|||||||||||++++|+|+++|++|+|.++|.|+.... ...+ |..++||+|++.+++ .|++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999987654 2233 467999999998775 5889998653
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccCCCCHHHHHH
Q 006489 497 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYL 574 (643)
Q Consensus 497 ~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TSaLD~~te~~ 574 (643)
.. + +.+..+...+...+. ....++..++||.+||||+..+|+ ++.|| |+++.|.
T Consensus 181 ~~------------~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~----- 236 (304)
T 1rj9_A 181 KA------------R--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG----- 236 (304)
T ss_dssp HH------------H--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH-----
T ss_pred Hh------------C--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH-----
Confidence 10 0 111111111211111 112246777999999999999999 44555 4444433
Q ss_pred HHHHHHHHc--CCCeEEEEccCchhH
Q 006489 575 VQDAMDSLM--KGRTVLVIAHRLSTV 598 (643)
Q Consensus 575 i~~~i~~~~--~~~TvI~VtHrl~~i 598 (643)
.+.++.+. .+.|+|+|||...+.
T Consensus 237 -~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 237 -LEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp -HHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred -HHHHHHHHHHcCCcEEEEECCcccc
Confidence 33332221 278999999986553
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=2.2e-17 Score=155.42 Aligned_cols=80 Identities=28% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCCCCHHHHHHHHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE--
Q 006489 534 GVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV-- 607 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl-- 607 (643)
...||||||||++|||++. ++|+++||||||++||+.++..+.+.|++..++.++|+|||+..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 6689999999999999999999999999988889999999999999999999855
Q ss_pred eCCEEE
Q 006489 608 SDGEIV 613 (643)
Q Consensus 608 ~~G~Iv 613 (643)
++|...
T Consensus 142 ~~g~s~ 147 (173)
T 3kta_B 142 RDGVSK 147 (173)
T ss_dssp ETTEEE
T ss_pred cCCEEE
Confidence 577543
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=8.5e-19 Score=180.92 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=81.2
Q ss_pred EeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC-CCCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 006489 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF-YDPIKGKILLNGVPLVEISHEHLHRKISIV 478 (643)
Q Consensus 400 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 478 (643)
+|++++|.. ..++++++|+| +|+|+||+|||||++.|.|. ..|.+| |.++|.++.. . .-++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEE
Confidence 477888864 46999999998 99999999999999999998 888999 9999887654 1 124679999
Q ss_pred ccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 006489 479 SQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 557 (643)
Q Consensus 479 ~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~I 557 (643)
+|++.++ .-|+.||..++.. ....+++....+. +.+.. +.. -.++|||||||+++|||+. +
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~--l~~~~-------~~~----~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTIISY--IDEQF-------ERY----LHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHH-------HHH----HHHHTSSCCTTCCCCCCCE----E
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHHHH--HHHHH-------HHH----HHHhCHHhhhhhhhhhhhh----e
Confidence 9987664 5699999888632 1111111111111 11111 111 1357999999999999985 9
Q ss_pred EEEecccCC-CCHHHHHHHHHHHHHHcC--CCeEEEEccCchh
Q 006489 558 LLLDEATSA-LDAESEYLVQDAMDSLMK--GRTVLVIAHRLST 597 (643)
Q Consensus 558 liLDE~TSa-LD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~ 597 (643)
+++||||++ ||+... +.++.+.+ +.++|+..|++.+
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999999986 999874 33333332 5678888998753
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.67 E-value=5.8e-17 Score=160.31 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=112.6
Q ss_pred CcceeceeE-EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc---ccEEEccCCCCCcc
Q 006489 412 HMVLKGITL-KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR---KISIVSQEPVLFNC 487 (643)
Q Consensus 412 ~~vL~~isl-~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~g 487 (643)
.+.|+++.. .+++|+.++|+||+|||||||++.+++...+.+|.|.+.+.+. +.+.++. .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 357888887 8999999999999999999999999998888888888766433 3333322 2333333211
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC--EEEEecccC
Q 006489 488 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATS 565 (643)
Q Consensus 488 TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~--IliLDE~TS 565 (643)
.+++...+ .... ... + -.+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 --~~~~~~~~--~~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 --EKKLIIID--ALMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp --TTTEEEEE--CCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred --hCCEEEEe--cccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 01111110 0100 000 0 0011 1238999998888887778999 999999999
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCCeEEEEccCc--------hhH-hhcCeEEEEeCC
Q 006489 566 AL--DAESEYLVQDAMDSLM--KGRTVLVIAHRL--------STV-QSADTVAVVSDG 610 (643)
Q Consensus 566 aL--D~~te~~i~~~i~~~~--~~~TvI~VtHrl--------~~i-~~aD~Iivl~~G 610 (643)
.+ |+.....+.+.|.++. .++|+|+++|.. ..+ ..||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9987788888887653 488999999998 334 469999999764
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.66 E-value=5.5e-18 Score=166.38 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=105.7
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc-cH----HHHh
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SI----EENI 493 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-Ti----reNI 493 (643)
..++|+.++|+||||||||||+++|+|+++| .+|+|.+.+.+.+. ..++.++|++|++.+|.. |+ .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 4689999999999999999999999999986 78999999877653 245689999999988864 44 4665
Q ss_pred hcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHH
Q 006489 494 AYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 572 (643)
Q Consensus 494 ~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te 572 (643)
.+.... ..+.+++ +.++..++++||| ||+.+.
T Consensus 88 ~~~~~~yg~~~~~v------------------------------------------~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 88 EVFGNYYGTSREAI------------------------------------------EQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EETTEEEEEEHHHH------------------------------------------HHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHhccCCCCHHHH------------------------------------------HHHHhcCCeEEEE-----ECHHHH
Confidence 543110 0112222 3333446999999 999999
Q ss_pred HHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 573 YLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 573 ~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
..+.+.+. .++|+++++|+++.++. |+ +++| .++.+++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99988775 57899999999998876 43 7777 678888764
No 119
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.65 E-value=5.9e-17 Score=188.15 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=104.4
Q ss_pred CcEEEEeEEEECC----CCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 006489 395 GEVELDDVWFAYP----SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 395 ~~I~~~~vsf~Y~----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 470 (643)
+.|++++..--.- ...+..+++|+||++++|+.++|+|||||||||+++++.+..-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 3577877532110 1114679999999999999999999999999999999875321
Q ss_pred HhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 471 LHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+.+.-.+||++..-+ ++.++| +...++.+.+ ..+-..+|+|++|+..|+|+
T Consensus 699 ~aq~g~~vpa~~~~i--~~~d~i----------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 699 MAQIGSYVPAEEATI--GIVDGI----------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp HHHHTCCBSSSEEEE--ECCSEE----------------EEEC---------------------CCHHHHHHHHHHHHHH
T ss_pred HhhcCccccchhhhh--hHHHHH----------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh
Confidence 111112333322100 000111 0001111111 11225689999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHH-HHHHHHc--CCCeEEEEccCchhHhhcCeE
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQ-DAMDSLM--KGRTVLVIAHRLSTVQSADTV 604 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~-~~i~~~~--~~~TvI~VtHrl~~i~~aD~I 604 (643)
..+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....||+.
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 8999999999999999999776666 4455442 489999999999988777654
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.65 E-value=5e-20 Score=179.99 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=92.2
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~ 501 (643)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 5 26889999999998888888742210011
Q ss_pred CHHHHHHHHHHcCchHHHHcCCCc--ccccccCCCCCCCHHHHHHHHHH-HHHccCCCEEEEeccc
Q 006489 502 SSADIENAAKMANAHDFISNFPEK--YQTFVGERGVRLSGGQKQRVAIA-RALMMNPRILLLDEAT 564 (643)
Q Consensus 502 ~~~~i~~al~~a~l~~~i~~lp~G--~~T~vge~G~~LSGGQrQRialA-RAl~~~p~IliLDE~T 564 (643)
..+.+...+.+++..++.| +++++.++|..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1111122233445555555 78889999999999999999999 9999999999999984
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.6e-17 Score=176.99 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=116.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCE--EEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~--vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.+++++ +++|++ .+ |+++||++++|+. +||||+||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 788864 35 9999999999999 9999999999999999999984 4565655544445567
Q ss_pred ccEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHH----HHHHcCchHHHHc-------CCCccccc-------ccCCC
Q 006489 474 KISIVSQEPVLF-NCSIEENIAYGCDGKASSADIEN----AAKMANAHDFISN-------FPEKYQTF-------VGERG 534 (643)
Q Consensus 474 ~i~~V~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~----al~~a~l~~~i~~-------lp~G~~T~-------vge~G 534 (643)
.++|++|++.++ .-|+.||+.++.. .+.+.-++ .++. .+.+++.. ++..-|+. |-+.+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999987 5799999999843 44322111 1111 11122222 22222332 23556
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEccC
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS-LM-KGRTVLVIAHR 594 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~-~~-~~~TvI~VtHr 594 (643)
..|+-.+ +.++|+|..+++|+++|+||..|.+..-..+.+.|++ +. .+.+++.++..
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6777776 8999999999999999999999998866777777775 43 46778888753
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=5.2e-18 Score=176.51 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=111.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC--------CCCCCEEEECCEeCCCCC---------------HHHHhcccEEE---c
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY--------DPIKGKILLNGVPLVEIS---------------HEHLHRKISIV---S 479 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~--------~p~~G~I~idg~~i~~~~---------------~~~lr~~i~~V---~ 479 (643)
+.++|+|+||||||||++.|+|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 35678889988 7
Q ss_pred cCCCC-CcccHHHHhhcCCCCCCCHHHHHHHH-------HHcCchHHHH--cCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 480 QEPVL-FNCSIEENIAYGCDGKASSADIENAA-------KMANAHDFIS--NFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 480 Q~~~L-f~gTireNI~~~~~~~~~~~~i~~al-------~~a~l~~~i~--~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
|++.+ |+.++.||..++.| ..+.+.+ +...+...+. .+.+..+.. .++|+||+||...+|
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADR 154 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCE
Confidence 88764 78999999988754 1121111 1111111100 111111111 158999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~ 596 (643)
+++.+||++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999987 888 667777777777899999999743
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=5.9e-16 Score=158.10 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=104.2
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh-hcCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI-AYGCDG 499 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI-~~~~~~ 499 (643)
.+++|+.++|+|++|||||||++.+++... .|++. .|.+..+ +..+.|++.+... ..+..++ .++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH--h
Confidence 478999999999999999999999998664 57663 3543321 3468888776543 3344443 233 1
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC--CCCHHHH---HH
Q 006489 500 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS--ALDAESE---YL 574 (643)
Q Consensus 500 ~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS--aLD~~te---~~ 574 (643)
+.+.++..++++...+.+ ..+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..
T Consensus 93 ~~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 345555555555554432 22344567899998865 78899999999999999 8998544 66
Q ss_pred HHHHHHHHc--CCCeEEEEccCchhH
Q 006489 575 VQDAMDSLM--KGRTVLVIAHRLSTV 598 (643)
Q Consensus 575 i~~~i~~~~--~~~TvI~VtHrl~~i 598 (643)
+.+.|.++. .++|+|+|+|.....
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 777777653 389999999988654
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=1.3e-15 Score=149.41 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=96.4
Q ss_pred cceeceeE-EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 413 MVLKGITL-KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 413 ~vL~~isl-~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.++++..+ .++... +++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 45677665 699999999999999999999999999 3333444443311 112222 222
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH--HHHHHHHHHHHccC-CCEEEEecccCCCC
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG--QKQRVAIARALMMN-PRILLLDEATSALD 568 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG--QrQRialARAl~~~-p~IliLDE~TSaLD 568 (643)
..... ..+.+++ .+.+ .+. ..|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ~~~~~---~~~~~~~------------~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 MAETR---GLNPEEA------------LSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHTT---TCCHHHH------------HHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHhc---CCChHHH------------hhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11110 1122211 1111 011 12333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CCeEEEEccCch-------------hH-hhcCeEEEEeCC
Q 006489 569 AESE--------YLVQDAMDSLMK--GRTVLVIAHRLS-------------TV-QSADTVAVVSDG 610 (643)
Q Consensus 569 ~~te--------~~i~~~i~~~~~--~~TvI~VtHrl~-------------~i-~~aD~Iivl~~G 610 (643)
+..+ ..+.+.|+++.+ ++|+|+++|... .+ ..||.|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8532 334444555433 899999999865 23 569999999764
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.61 E-value=1.3e-17 Score=160.14 Aligned_cols=161 Identities=19% Similarity=0.087 Sum_probs=99.5
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 500 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~ 500 (643)
.+++|+.++|+|+||||||||+++|++. |..|.|.+||.++..... .++.++|++|++. .+.|+++|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 678999999976532211 1345788888765 56789999865310
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCC--ccccc--ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHH
Q 006489 501 ASSADIENAAKMANAHDFISNFPE--KYQTF--VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 576 (643)
Q Consensus 501 ~~~~~i~~al~~a~l~~~i~~lp~--G~~T~--vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~ 576 (643)
...+ .+-...++.+.. +++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 78 -------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 -------RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp -------HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred -------HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0011 110000011000 11100 12234579999999999999999999976 5777666666
Q ss_pred HHHHHHcCCCeEEEEccCchhHhhcCeE
Q 006489 577 DAMDSLMKGRTVLVIAHRLSTVQSADTV 604 (643)
Q Consensus 577 ~~i~~~~~~~TvI~VtHrl~~i~~aD~I 604 (643)
+.+..+....++++.|+..+.-..+|+|
T Consensus 142 ~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHhccCcccccEEECCCCCHHHHHHHH
Confidence 6554432212334445443333333433
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=2.5e-16 Score=181.44 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=109.5
Q ss_pred CcEEEEeEEEECCCC----CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHH
Q 006489 395 GEVELDDVWFAYPSR----PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHE 469 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~ 469 (643)
+.|++++.. +|-- .+..+++|+||+ ++|+.++|+||||||||||+++++|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 358888753 3310 135789999999 99999999999999999999999997422 2221 1110
Q ss_pred HHhcccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 470 HLHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
-+..+++++| +|. -++.||+..+ . ..+|+++++ ++.+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------~--------stf~~e~~~-~~~i 680 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG-----------------------------R--------STFMVEMTE-TANI 680 (800)
T ss_dssp -SEEEECCCCE---EEEEEC------------------------------------------------CHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh-----------------------------h--------hhhhHHHHH-HHHH
Confidence 1234666655 332 2444444221 1 235666654 4444
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHH-HHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYL-VQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~-i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
...+.+|+++||||||+++|+..... ..+.++.+. .++|+|++||..+....||++..+++|++....
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 45689999999999999988874433 345555443 389999999999998889988778888776543
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=3.4e-15 Score=148.66 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=93.8
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHc--CCCC-----CCCEEEECCEeCCC-CCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIER--FYDP-----IKGKILLNGVPLVE-ISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g--~~~p-----~~G~I~idg~~i~~-~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
-+++|+.++|+||+|||||||++.+++ ..+| .+|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5555 67889998865211 1123355567776664 5677
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccCCCCHH
Q 006489 493 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAE 570 (643)
Q Consensus 493 I~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~--~~p~IliLDE~TSaLD~~ 570 (643)
+.+.. ..+.++..+.++. +++++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~--~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLYQ-----------------------------------ASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEE--CCSHHHHHHHHHH-----------------------------------HHHHHHHSCEEEEEEETSSGGGC--
T ss_pred eEEEe--cCCHHHHHHHHHH-----------------------------------HHHHHhcCCceEEEEeCchHHHHHH
Confidence 76653 2343333332211 11111 689999999999999986
Q ss_pred -------HHH-----HHHHHHHHHc--CCCeEEEEccCchhHh--------------------hcCeEEEEeCC
Q 006489 571 -------SEY-----LVQDAMDSLM--KGRTVLVIAHRLSTVQ--------------------SADTVAVVSDG 610 (643)
Q Consensus 571 -------te~-----~i~~~i~~~~--~~~TvI~VtHrl~~i~--------------------~aD~Iivl~~G 610 (643)
+++ .+.+.+.++. .++|+|+++|-..... .||.|++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 2333344332 3899999999654332 58999999875
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=5.2e-17 Score=170.05 Aligned_cols=180 Identities=11% Similarity=0.093 Sum_probs=119.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHh
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 472 (643)
|+++|+++.|.. ..+|+++||++++|++++|+|++|||||||+++|+|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 455666777743 368999999999999999999999999999999999999999999999998854321 2357
Q ss_pred cccEEEccCCCCCc----------cc---HHHHhhc---CC--------C-CCCCHHHHHHHHHHc-------------C
Q 006489 473 RKISIVSQEPVLFN----------CS---IEENIAY---GC--------D-GKASSADIENAAKMA-------------N 514 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~----------gT---ireNI~~---~~--------~-~~~~~~~i~~al~~a-------------~ 514 (643)
.++++++|++.+|. || ++|.+.. .. + -..++..+.+.+..+ .
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 78999999999985 22 3333210 00 0 000111111111000 0
Q ss_pred chHHHHcCCCccc-ccccC-CCCCCCHHHHHHHHHHHHHcc------CCCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 006489 515 AHDFISNFPEKYQ-TFVGE-RGVRLSGGQKQRVAIARALMM------NPRILLLDEATSALDAESEYLVQDAMDSLM 583 (643)
Q Consensus 515 l~~~i~~lp~G~~-T~vge-~G~~LSGGQrQRialARAl~~------~p~IliLDE~TSaLD~~te~~i~~~i~~~~ 583 (643)
+.+.+...|+-+- +.+.- ....+|+|++|++..|++++. +|+++. |||+|.++-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0001111121000 00110 123579999999999999997 688876 99999998888888887653
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=1e-15 Score=164.98 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHH--HhcccEEEccCCCCC-ccc
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEH--LHRKISIVSQEPVLF-NCS 488 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~--lr~~i~~V~Q~~~Lf-~gT 488 (643)
+++||++++|++++|||+||||||||+++|+|++.|.+|+|.++|.|+.... ... .|..|+|++|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999987775431 122 477899999998765 579
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc-CC-CEEEEecccCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM-NP-RILLLDEATSA 566 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~-~p-~IliLDE~TSa 566 (643)
+++||.++....++ + -.+..+|.. + +-.++-.--+|++.++|++.. .| .+++..+||++
T Consensus 364 V~e~l~~a~~~~~D---v-VLIDTaGrl----------~-----~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 364 IFDAIQAAKARNID---V-LIADTAGRL----------Q-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHTTCS---E-EEECCCCSC----------C-----CHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHhcCCC---E-EEEeCCCcc----------c-----hhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 99999876321111 0 000111110 0 001111223588999998864 35 35666668888
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEccC
Q 006489 567 LDAESEYLVQDAMDSLMKGRTVLVIAHR 594 (643)
Q Consensus 567 LD~~te~~i~~~i~~~~~~~TvI~VtHr 594 (643)
.|+... .+.+.+. -+.|.+++||-
T Consensus 425 q~al~~---ak~f~~~-~~itgvIlTKL 448 (503)
T 2yhs_A 425 QNAVSQ---AKLFHEA-VGLTGITLTKL 448 (503)
T ss_dssp HHHHHH---HHHHHHH-TCCSEEEEECG
T ss_pred HHHHHH---HHHHHhh-cCCCEEEEEcC
Confidence 665522 1223322 37899999993
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=7.5e-14 Score=148.34 Aligned_cols=74 Identities=30% Similarity=0.379 Sum_probs=68.2
Q ss_pred CCCCHHHHHHH------HHHHHHccC-CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 535 VRLSGGQKQRV------AIARALMMN-PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 535 ~~LSGGQrQRi------alARAl~~~-p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
..|||||+||+ ++|||+..+ |+++||||||++||+.+...+.+.|.++.+++|+|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 678999999 99999999999999999999999998876667999999999877889999999
Q ss_pred e
Q 006489 608 S 608 (643)
Q Consensus 608 ~ 608 (643)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.44 E-value=1.7e-16 Score=169.99 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=92.8
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC----CCHHHHhcccEEEc---------c
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----ISHEHLHRKISIVS---------Q 480 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~lr~~i~~V~---------Q 480 (643)
+|+++ + .++|+.++|+||||||||||+++|+|+++|.+|+|.+++.++.. ++...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45665 3 37899999999999999999999999999999999999988742 11223455666655 9
Q ss_pred CCCCC--c-----ccHHHHhhcCCC--------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 481 EPVLF--N-----CSIEENIAYGCD--------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 481 ~~~Lf--~-----gTireNI~~~~~--------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+|.++ . -|+++|+.++.. ...+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 98863 2 388999876421 011223344455555655432 235799999999
Q ss_pred HHHHHHccCCCEEE
Q 006489 546 AIARALMMNPRILL 559 (643)
Q Consensus 546 alARAl~~~p~Ili 559 (643)
||||++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.44 E-value=1.1e-17 Score=160.70 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=107.2
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccHHHHhhcCCCCCCCH
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASS 503 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTireNI~~~~~~~~~~ 503 (643)
|+.++|+|+||||||||+++|++ |.+|++.++|.++.+. ..+++++|....+ ..|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999997 6789999998554321 2467788766433 457777775421
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccC----CCCCC--CHHHHHHHHHHH------HHccCCCEEEEecccCCCCHHH
Q 006489 504 ADIENAAKMANAHDFISNFPEKYQTFVGE----RGVRL--SGGQKQRVAIAR------ALMMNPRILLLDEATSALDAES 571 (643)
Q Consensus 504 ~~i~~al~~a~l~~~i~~lp~G~~T~vge----~G~~L--SGGQrQRialAR------Al~~~p~IliLDE~TSaLD~~t 571 (643)
..... .+. +.+ ++...+. .-..+ |+|++|++.++. +++++|+...+|+ .+|+..
T Consensus 67 ---~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 67 ---VNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ---HHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ---HHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 11111 010 000 1110010 00124 888888988888 8899998888884 789886
Q ss_pred HHHHHHHHHHHc-CCCeEEEEccC-chhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 572 EYLVQDAMDSLM-KGRTVLVIAHR-LSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 572 e~~i~~~i~~~~-~~~TvI~VtHr-l~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
.+. .+.+.... .+.|+|..+|. ++.+. -||+|+ ++|+++..|+.+-|
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 666 67776654 35799999999 88875 599998 99999999998765
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.43 E-value=1e-14 Score=152.41 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=80.9
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-CCCCEEEEC-CEeCCCCCHHHHhcccEEEccCCCCCc-ccH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLN-GVPLVEISHEHLHRKISIVSQEPVLFN-CSI 489 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-p~~G~I~id-g~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTi 489 (643)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |.+|+|.++ |.+.. ...+..+++++|++++++ -|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 347778774 4899999999999999999999999999 999999987 76542 234668999999999885 499
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+++-.. ..+.+++.+. ..++++.+ |+.-...-.-.+|| ||+||++||++++
T Consensus 279 ~e~~l~----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 996432 3455444321 22222222 22222333456789 9999999999863
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=5.1e-14 Score=148.55 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=81.3
Q ss_pred EEEEECCCCChHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccHHHHhhcCCCCCCCHH
Q 006489 427 KIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSA 504 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTireNI~~~~~~~~~~~ 504 (643)
.+.|+||+|+||||+++++.+ ++.|..|.|.++|.+...... .+..+++++|++++. +.+- .+ ..+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG---NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC---CcchH
Confidence 399999999999999999999 899999999999988764333 377899999998753 2110 01 11222
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC
Q 006489 505 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584 (643)
Q Consensus 505 ~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~ 584 (643)
.+.+.++.+.- .. +++..+ .||| +..+|+|+|+|||++ ||+.+...+.+.+.+..+
T Consensus 108 ~~~~~i~~~~~-----~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLKEVAQ-----ME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHHHHTT-----TT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-----hc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 34444333211 10 111111 5666 778999999999999 999999999999988777
Q ss_pred CCeEEEEccCchhH
Q 006489 585 GRTVLVIAHRLSTV 598 (643)
Q Consensus 585 ~~TvI~VtHrl~~i 598 (643)
++++|++||+++.+
T Consensus 164 ~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 164 NIRLIMVCDSMSPI 177 (354)
T ss_dssp TEEEEEEESCSCSS
T ss_pred CCEEEEEeCCHHHH
Confidence 88999999997643
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.43 E-value=3.3e-16 Score=172.23 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=120.3
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc--ccH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN--CSI 489 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gTi 489 (643)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+++|.+--.++ . +..++++.|+.. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCH
Confidence 34688999999999999999999999999999999999999999999986522222 1 346788888765 33 377
Q ss_pred HHHhhcC---CC-----CCCCHHHHHHHHHHcCc-------------hHH---HHcCCCccccccc-------CCCCCCC
Q 006489 490 EENIAYG---CD-----GKASSADIENAAKMANA-------------HDF---ISNFPEKYQTFVG-------ERGVRLS 538 (643)
Q Consensus 490 reNI~~~---~~-----~~~~~~~i~~al~~a~l-------------~~~---i~~lp~G~~T~vg-------e~G~~LS 538 (643)
++++... +| .+..+.|...+++.+.- .+. +...|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776432 11 13555556566665431 122 2333444433322 1234579
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEE--EccCchhHh-hcC
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLV--IAHRLSTVQ-SAD 602 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~--VtHrl~~i~-~aD 602 (643)
||||||.++|. + | |++||+++.+.+.+.+.++. .++|+++ +||.++.+. .|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988752 1 7 99999987776666665553 3688875 899999875 354
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=5.2e-15 Score=137.37 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred EeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 006489 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS 479 (643)
Q Consensus 400 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 479 (643)
+|++++|.+ ..+++++||++++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 455666742 36899999999999999999999999999999999999 9999999999887521 1112 2899
Q ss_pred cCCCCCcccHHHHhhc
Q 006489 480 QEPVLFNCSIEENIAY 495 (643)
Q Consensus 480 Q~~~Lf~gTireNI~~ 495 (643)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999954
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.42 E-value=1.7e-13 Score=145.98 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=97.1
Q ss_pred EeeCCCEEEEECCCCChHHHHHH--HHHcCCCCCCC-----EEEECCEeCC-CCCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 421 KLLSGSKIALVGPSGGGKSTIAN--LIERFYDPIKG-----KILLNGVPLV-EISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~--lL~g~~~p~~G-----~I~idg~~i~-~~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
-|++|+.++|+||||||||||++ ++.+..+++.| .|++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 44677766444 8999986531 1123334566777665 67888
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccCCCCHH
Q 006489 493 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAE 570 (643)
Q Consensus 493 I~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~--~~p~IliLDE~TSaLD~~ 570 (643)
+.+..+ .+.++..+.+ .-+++++ .+|+++++||||+.+|++
T Consensus 247 i~~~~~--~~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 247 VAYARA--YNADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp EEEEEC--CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred EEEecc--CChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCchh
Confidence 877633 3333222222 2222222 479999999999999976
Q ss_pred HH------------HHHHHHHHHHc--CCCeEEEEccCch-------------------hH-hhcCeEEEEeCCE
Q 006489 571 SE------------YLVQDAMDSLM--KGRTVLVIAHRLS-------------------TV-QSADTVAVVSDGE 611 (643)
Q Consensus 571 te------------~~i~~~i~~~~--~~~TvI~VtHrl~-------------------~i-~~aD~Iivl~~G~ 611 (643)
.. ..+.+.|+++. .++|+|+|+|-.. .+ ..||.++.|++++
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 33 44555565543 3899999999832 12 3489999998763
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.42 E-value=5.4e-15 Score=148.01 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=106.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHH---cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHHhhcCC--
Q 006489 424 SGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENIAYGC-- 497 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~---g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~-- 497 (643)
++++++|+|++|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.++. .|+.+|+...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 234556777788877664 58899985410
Q ss_pred --------C-CCCCHHHHHHHHHHcCch--HHHHcCCC-c-ccccccCCCCCCCHHHHHHHHHHHHH-ccCCCEEEEe--
Q 006489 498 --------D-GKASSADIENAAKMANAH--DFISNFPE-K-YQTFVGERGVRLSGGQKQRVAIARAL-MMNPRILLLD-- 561 (643)
Q Consensus 498 --------~-~~~~~~~i~~al~~a~l~--~~i~~lp~-G-~~T~vge~G~~LSGGQrQRialARAl-~~~p~IliLD-- 561 (643)
. ...+.++.....+....+ -++ ..|. - ++-.....-..||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 011222222211111100 000 0000 0 00011222346888 66 888 9999999999
Q ss_pred --cccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 562 --EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 562 --E~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
|||+++|..++..+.+.++.+.+. + ..-+...++.+++++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~-~----~~v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV-A----KPVIELYKSRGVLHQFSG 218 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH-H----HHHHHHHHHTTCEEEEEC
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh-H----HHHHHHHhhcCcEEEECC
Confidence 999999999999999888765322 1 000123344567777765
No 139
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=9.4e-14 Score=144.23 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=108.5
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH----HHhcc--cEEEccCCCCCc-ccHHHHh
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE----HLHRK--ISIVSQEPVLFN-CSIEENI 493 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~----~lr~~--i~~V~Q~~~Lf~-gTireNI 493 (643)
..++|+.++|||||||||||+++.|+|++.|.+|+|.++|.|+...... .++++ +.+++|+..+++ .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999876633 23444 559999988874 6899999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHH
Q 006489 494 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY 573 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~ 573 (643)
.++....++ . .+ .||. |-.. .-..=-++.-.++|++..++++++||.+|. .|....
T Consensus 205 ~~~~~~~~d------------~--vl------iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~- 260 (328)
T 3e70_C 205 QHAKARGID------------V--VL------IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ- 260 (328)
T ss_dssp HHHHHHTCS------------E--EE------EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH-
T ss_pred HHHHhccch------------h--hH------Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH-
Confidence 765210000 0 00 1221 1000 000112233458999999999999996665 333321
Q ss_pred HHHHHHHHHcCCCeEEEEccCchhH----------hhcCeEEEEeCCEEE
Q 006489 574 LVQDAMDSLMKGRTVLVIAHRLSTV----------QSADTVAVVSDGEIV 613 (643)
Q Consensus 574 ~i~~~i~~~~~~~TvI~VtHrl~~i----------~~aD~Iivl~~G~Iv 613 (643)
.+.+.+. .+.|.|++||--.+. ...-.|..+..|+-+
T Consensus 261 --~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 --ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1223222 378999999954321 123467777777644
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.34 E-value=7.4e-13 Score=121.73 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=68.4
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC--EEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G--~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 45665 8999999999999999999999999986 57 555555322110
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHH
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 571 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~t 571 (643)
+++.+|++|+||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 3467899999999998 65555
Q ss_pred HHHHHHHHHHHc-CCCe-EEEEccC
Q 006489 572 EYLVQDAMDSLM-KGRT-VLVIAHR 594 (643)
Q Consensus 572 e~~i~~~i~~~~-~~~T-vI~VtHr 594 (643)
++.+.+.+.... +++| +|++||+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 777888876654 3577 7777775
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1.3e-13 Score=142.03 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=82.9
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHh-cccEEEccCCCCC------cccH
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLH-RKISIVSQEPVLF------NCSI 489 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr-~~i~~V~Q~~~Lf------~gTi 489 (643)
+++.+|++++++|+||||||||+|+|. +.+|.+|+|.+ +|.++..... ..+ +.++||+|+|-+. .-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345689999999999999999999999 99999999999 9988876542 223 3799999999653 4578
Q ss_pred HHHh--hcC---------C---CCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 490 EENI--AYG---------C---DGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 490 reNI--~~~---------~---~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
||+ .|. . +......++.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 898 443 1 11123456889999999875 444444 357888888899987
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=6.5e-15 Score=149.73 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=104.7
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC-CCCc-ccHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP-VLFN-CSIE 490 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-~Lf~-gTir 490 (643)
.+++++++++++| ++|+||+|||||||+++|+|++.+ |.|.++|.++........++.+++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999876 79999999887766666778899999986 3443 4778
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC-----
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS----- 565 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS----- 565 (643)
|||....+ ..+..+. + ...+.+..+ -..|||||+||..+++|+..+|+++ |||+.
T Consensus 110 Deid~~~~-~r~~~~~-~-----~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-G-----ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred ehhhhhhc-ccCCCcc-h-----HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 88866532 1111110 0 011112221 2357999999999999999999975 99975
Q ss_pred -------CCCHHHHHHHHHHH
Q 006489 566 -------ALDAESEYLVQDAM 579 (643)
Q Consensus 566 -------aLD~~te~~i~~~i 579 (643)
.-|.+.+..|.+.+
T Consensus 170 d~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHH
Confidence 23667777776654
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.29 E-value=4.4e-15 Score=147.15 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH-cCC------------CCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-RFY------------DPIKGKILLNGVPLVEISHEHLHRKISIV 478 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~-g~~------------~p~~G~I~idg~~i~~~~~~~lr~~i~~V 478 (643)
....+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... .
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---C 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---H
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---h
Confidence 34678999999999999999999999999999999 999 5555544 4433333333333221 1
Q ss_pred ccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcC-CCcccccccCCCCCCCHHHHHHH-HHHH-HHccCC
Q 006489 479 SQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF-PEKYQTFVGERGVRLSGGQKQRV-AIAR-ALMMNP 555 (643)
Q Consensus 479 ~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~l-p~G~~T~vge~G~~LSGGQrQRi-alAR-Al~~~p 555 (643)
.++..++.+++.+|+ ++.+ .+++.++++.... .+..+ +.|. ..-+++. .-++ .++..|
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~----~~~i~~~~~~~~~--vild~~~~g~------------~~~~~~~~~~~~~v~v~~~ 149 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNF-YGVP----RKNLEDNVDKGVS--TLLVIDWQGA------------FKFMEMMREHVVSIFIMPP 149 (231)
T ss_dssp HTTCEEEEEEETTEE-EEEE----CTTHHHHHHHTCE--EEEECCHHHH------------HHHHHHSGGGEEEEEEECS
T ss_pred hcCceehhhhhcccc-CCCC----HHHHHHHHHcCCe--EEEEcCHHHH------------HHHHHhcCCCeEEEEEECC
Confidence 122333333333443 3322 1234444443211 01011 1111 1114444 2223 345778
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHH
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSL 582 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~ 582 (643)
+..++||++++.|..++..+.+.|...
T Consensus 150 ~~~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 150 SMEELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp CHHHHHHC--------------CHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 888899999999998888887776543
No 144
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=4.1e-12 Score=120.48 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD 498 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~ 498 (643)
++++++|+.++|+||+|||||||++++++.+.|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 56788999999999999999999999999987766631 1111 111111
Q ss_pred CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC-CCCHHHHHHHHH
Q 006489 499 GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQD 577 (643)
Q Consensus 499 ~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS-aLD~~te~~i~~ 577 (643)
+++......... + -+...+.+|++|+||||++ ++|+.....+.+
T Consensus 80 -----~~~~~~~~~~~~---------------------------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 80 -----FRLKHLMDEGKD---------------------------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp -----HHHHHHHHHTCC---------------------------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred -----HHHHHHhcCchH---------------------------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 011111110000 0 1122245999999999996 899999888888
Q ss_pred HHHHHc-CCCeEEEEccCch
Q 006489 578 AMDSLM-KGRTVLVIAHRLS 596 (643)
Q Consensus 578 ~i~~~~-~~~TvI~VtHrl~ 596 (643)
.+.... .++|+|++||...
T Consensus 125 ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHcCCCEEEEcCCCh
Confidence 887654 6899999999874
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.24 E-value=9.5e-14 Score=136.87 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=106.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCCEEEE--------CCEeCCC-CCHHHHhcccEEEccCC------CCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY---DPIKGKILL--------NGVPLVE-ISHEHLHRKISIVSQEP------VLF 485 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~---~p~~G~I~i--------dg~~i~~-~~~~~lr~~i~~V~Q~~------~Lf 485 (643)
.+..++|+|++||||||++++|.+.| .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 778899987 7877753 55678899999999987 556
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Q 006489 486 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 564 (643)
Q Consensus 486 ~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg-e~G~~LSGGQrQRialARAl~~~p~IliLDE~T 564 (643)
..++.+|+. ++++.+++..+..++.+...+.+..+.+. ++|.-++|+ .++++++++++++|+.+++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 777878763 35788999999999999988888777663 567888887 5677888999999998876
Q ss_pred C
Q 006489 565 S 565 (643)
Q Consensus 565 S 565 (643)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=1.2e-12 Score=139.86 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=94.7
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhh
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 494 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~ 494 (643)
-++++|+++.|+.|+|||++|||||||+++|++..+ .+.+.+...+ ...+++|+|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 579999999999999999999999999999999843 3445444333 346777777651 1223333332
Q ss_pred cCCC----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 495 YGCD----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 495 ~~~~----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
+... ...... ..+..+.|...=.+-.+. .+.-.+||+||+||.++||+|..+|.|++| +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~~lL~vvDls-------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTRVLLYVLDAA-------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSSEEEEEEETT-------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHHhhhEEeCCc-------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2100 012221 222222222110011111 112246899999999999999999999999 899987
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEcc
Q 006489 571 SEYLVQDAMDSLM--KGRTVLVIAH 593 (643)
Q Consensus 571 te~~i~~~i~~~~--~~~TvI~VtH 593 (643)
.+. ..+.+.+.. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 553 333443332 3567777764
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.15 E-value=1.6e-11 Score=118.76 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=95.6
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc-cHHHHhhcCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGC 497 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~ 497 (643)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 588888887766655567889999999988754 5555553321
Q ss_pred C-----CCCCHHHHHHHHHHc----------CchHHHHcCCCcc------------cccccCCCCCCCHHHHHHHHHHHH
Q 006489 498 D-----GKASSADIENAAKMA----------NAHDFISNFPEKY------------QTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 498 ~-----~~~~~~~i~~al~~a----------~l~~~i~~lp~G~------------~T~vge~G~~LSGGQrQRialARA 550 (643)
. ...+.+++.++++.. ++.......|+.+ ...+-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 011234555555542 1112223333321 112335565555667788888876
Q ss_pred Hc---cCCCEEEEecccCCCCHH-HHHHHHHHHHH
Q 006489 551 LM---MNPRILLLDEATSALDAE-SEYLVQDAMDS 581 (643)
Q Consensus 551 l~---~~p~IliLDE~TSaLD~~-te~~i~~~i~~ 581 (643)
.. +.+|.+|.++ |.+ +.+.+.+.|..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 54 3467777654 444 45555555543
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=6e-12 Score=129.64 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=71.1
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHhcccEEEccCCC-------------
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLHRKISIVSQEPV------------- 483 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~------------- 483 (643)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 9998876542211246999999985
Q ss_pred ---CC-cccHHHHhhcCCC--CCCCHHHHHHHHHHcCch-HHHHcCCC
Q 006489 484 ---LF-NCSIEENIAYGCD--GKASSADIENAAKMANAH-DFISNFPE 524 (643)
Q Consensus 484 ---Lf-~gTireNI~~~~~--~~~~~~~i~~al~~a~l~-~~i~~lp~ 524 (643)
+| +-|+ +|+.|... ....+.++.++++..+|. +.....|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 34 3578 99988531 122345789999999994 66666554
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=1e-12 Score=135.96 Aligned_cols=139 Identities=14% Similarity=0.256 Sum_probs=96.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEe-------------------eCCCEEEEECCCCChHHHHHHHHHcCCC--CCC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKL-------------------LSGSKIALVGPSGGGKSTIANLIERFYD--PIK 453 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i-------------------~~G~~vaivG~sGsGKSTLl~lL~g~~~--p~~ 453 (643)
+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999993 5899999988 8999999999999999999999999998 999
Q ss_pred CEEEE---CCEeCCCCCHHHHhcccEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 006489 454 GKILL---NGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 529 (643)
Q Consensus 454 G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 529 (643)
|+|.+ ||.+. +. ..++.++++ |+..++ .-|+.+|+.+... + ..-.+ -...|. |+..
T Consensus 111 G~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-------l------~~~~~-~i~~P~-~~~~ 170 (308)
T 1sq5_A 111 RRVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVSD-------L------KSGVP-NVTAPV-YSHL 170 (308)
T ss_dssp CCEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-------H------TTTCS-CEEECC-EETT
T ss_pred CeEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH-------H------hCCCC-ceeccc-cccc
Confidence 99999 98764 22 456678998 765553 3467777654310 0 00000 001121 1111
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCH
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~ 569 (643)
. + +|+..+.+...+++++|+|.|..-.|.
T Consensus 171 ~---------~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 171 I---------Y--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp T---------T--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred c---------c--CcccccceecCCCCEEEECchhhCCCc
Confidence 1 1 333333355678999999999887763
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=4e-11 Score=122.92 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=98.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
+.++++++.|++. . ++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 5667777888532 1 678888 8999999999999999999999999999999999988765431110
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
+ ++....+..++. -+|.+ ..-...+-||.+|+++..+++|
T Consensus 143 --------------~-------------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 --------------E-------------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp --------------H-------------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHTCC
T ss_pred --------------H-------------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCCCC
Confidence 0 001111111111 11111 1123445678999999889999
Q ss_pred EEEEecc-cCCCCHHHHHHHHHHHHHHcCCCeEEEEc
Q 006489 557 ILLLDEA-TSALDAESEYLVQDAMDSLMKGRTVLVIA 592 (643)
Q Consensus 557 IliLDE~-TSaLD~~te~~i~~~i~~~~~~~TvI~Vt 592 (643)
++|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999987777777766665566655443
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.10 E-value=5.7e-12 Score=126.41 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=85.1
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHH---cCCCCCCCEEE--------ECCEeC-CCCCHHHHhcccEEEcc-
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKIL--------LNGVPL-VEISHEHLHRKISIVSQ- 480 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~---g~~~p~~G~I~--------idg~~i-~~~~~~~lr~~i~~V~Q- 480 (643)
++++.+ ++|++++|+|+|||||||++++|. |++.|++|.|. .+|.++ .......+++.+++++|
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 999999 45668889999999995
Q ss_pred -----CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 006489 481 -----EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533 (643)
Q Consensus 481 -----~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~ 533 (643)
..++++.++.+||.. +++.+++..+..++.+......+...++++
T Consensus 96 ~~~~~~~~l~~~~v~~~i~~--------~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~ 145 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIRT--------ETVGNTASQAAAFPRVREALLRRQRAFREA 145 (252)
T ss_dssp ETTEEEEEETTEECTTGGGS--------HHHHHHHHHHTTSHHHHHHHHHHHHTTCCS
T ss_pred CCCCceEEECCeehhHHHHH--------HHHHHHHHHhcccHHHHHHHHHHHHHHhhC
Confidence 456778888888742 356777777777777776666555555543
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.09 E-value=1.1e-10 Score=119.86 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=72.3
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 497 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~ 497 (643)
++++.++|+.++|+|++||||||+++.|++.+.+.+|+|.+.+.|.... ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHH------
Confidence 3555678999999999999999999999999999888998877654210 0111
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH---HHHHHHccCCCEEEEecccC
Q 006489 498 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV---AIARALMMNPRILLLDEATS 565 (643)
Q Consensus 498 ~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi---alARAl~~~p~IliLDE~TS 565 (643)
++...++..++ | . + ...|||+.|++ +|+||+.++|+++|+|+|..
T Consensus 150 -------qL~~~~~~~gl-------~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 -------QLKIWGERVGA-------T----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -------HHHHHHHHHTC-------E----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -------HHHHHHHHcCC-------c----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22223333222 1 1 1 13478999999 99999999999999999984
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.07 E-value=1.5e-10 Score=118.59 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=92.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS 502 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~ 502 (643)
++|+.++++|++||||||+++.|++.+.+.+| .++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47999999999999999999999999988778 26777888873 4344444432
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH
Q 006489 503 SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 582 (643)
Q Consensus 503 ~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~ 582 (643)
..+..++ |. ... .+ ++..+.+|+++ +++|++|+| |+++|+..+..+.+...-.
T Consensus 156 ------~~~~~gl-------~~----~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 156 ------YAELLQA-------PL----EVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp ------HHTTTTC-------CC----CBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred ------HHHhcCC-------Ce----Eec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 1111111 11 011 12 34467788865 999999999 9999987666554433222
Q ss_pred c---CCCeEEEE--ccCchhHhh-cCeEEEEeCCEEEE
Q 006489 583 M---KGRTVLVI--AHRLSTVQS-ADTVAVVSDGEIVE 614 (643)
Q Consensus 583 ~---~~~TvI~V--tHrl~~i~~-aD~Iivl~~G~Ive 614 (643)
. .+.+.+++ +|..+.+.. +|++-.++.+.|+-
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 1 23345666 899777655 77776677777775
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.07 E-value=4.2e-11 Score=114.21 Aligned_cols=128 Identities=21% Similarity=0.320 Sum_probs=66.6
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.++..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 57899999999999999999999998 888886 88887777777766653 2566666777766
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcC---c------hHHHHc--------------CCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 492 NIAYGCDGKASSADIENAAKMAN---A------HDFISN--------------FPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~---l------~~~i~~--------------lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|+ +|.+ .+++.++++... + ...+.. -++-+...+-++|..-....+||++-|
T Consensus 76 ~~-yg~~----~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST----VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE----HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc----HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 65 5532 344555444311 1 011222 124566677788888778889999999
Q ss_pred HHHc-----cCCCEEEEec
Q 006489 549 RALM-----MNPRILLLDE 562 (643)
Q Consensus 549 RAl~-----~~p~IliLDE 562 (643)
++-+ +.+|.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 9865 5678777765
No 155
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.05 E-value=1.5e-11 Score=126.06 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=58.7
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHhcccEEEccCCCCCc-----ccHHH
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLHRKISIVSQEPVLFN-----CSIEE 491 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-----gTire 491 (643)
+++.+|++++|+|+||||||||+|+|+|+..|..|+|.+ +|+++.... ..++..++|++|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888776543 222323899999998764 578 9
Q ss_pred Hhh--cC------------C--CCCCCHHHHHHHHHHcCchHH
Q 006489 492 NIA--YG------------C--DGKASSADIENAAKMANAHDF 518 (643)
Q Consensus 492 NI~--~~------------~--~~~~~~~~i~~al~~a~l~~~ 518 (643)
|+. |. + ........+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 993 21 0 111223468888888888653
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.05 E-value=4e-11 Score=129.83 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=55.5
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 467 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 467 (643)
++.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455555432 1379999999999 999999999999999999999999999999999999987654
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.01 E-value=3.8e-11 Score=114.88 Aligned_cols=84 Identities=27% Similarity=0.347 Sum_probs=69.6
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF 485 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 485 (643)
|+...+|+.++|+||||||||||+++|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 45556899999999999999999999999986 77888 699999999999999886 6999999
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHH
Q 006489 486 NCSIEENIAYGCDGKASSADIENAAKM 512 (643)
Q Consensus 486 ~gTireNI~~~~~~~~~~~~i~~al~~ 512 (643)
.+++.+|. ||.+ .+.++++++.
T Consensus 88 ~~~~~~n~-YGt~----~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FGTK----FETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EEEE----HHHHHHHHHT
T ss_pred hhhhhcee-cccc----hhhHHHHHhc
Confidence 99999994 8843 4556666554
No 158
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.97 E-value=2.6e-13 Score=142.14 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=97.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCC-------CEEEEECCCCChHHHHHHHHHcCC----CCCCCEEEECCEeCCC
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSG-------SKIALVGPSGGGKSTIANLIERFY----DPIKGKILLNGVPLVE 465 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-------~~vaivG~sGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~ 465 (643)
++.++++..|.. ..+++++++.+++| +.++|+||+|+|||||++++++++ .+.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 344455555642 35899999999877 889999999999999999999998 6778888777766543
Q ss_pred CCHHHHhcccEEEccCCCCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCC-CcccccccCCCCCCCH
Q 006489 466 ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFP-EKYQTFVGERGVRLSG 539 (643)
Q Consensus 466 ~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp-~G~~T~vge~G~~LSG 539 (643)
+.....+..|.+++|...++. |+.|++..... ...+ ...-. +. +.. .+| -++.. ...+-..||+
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~---~l~~~~li~-at~~~~~Ls~ 165 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRI---DIQPFTLVG-ATTRSGLLSS 165 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccc---cCCCeEEEE-ecCCcccCCH
Confidence 211112457999999888775 88888843210 0100 00000 00 000 111 12211 1122347999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 582 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~ 582 (643)
|+|||++++ ..||+.+...+.+.+++.
T Consensus 166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 166 PLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 999998655 667776666666666554
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.97 E-value=1.4e-12 Score=132.79 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=98.0
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++++...|. .+.+++++++++++| ++|+||+|||||||+++|.+... .|.|.+++.++.+......++.+.+
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3455555553 235899999999999 99999999999999999999875 8999999987755544556677888
Q ss_pred EccCCC-CC-cccHHHHh-hcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 478 VSQEPV-LF-NCSIEENI-AYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 478 V~Q~~~-Lf-~gTireNI-~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
++|++. .+ .-++.||| .++..... ..++..+.+. ..+ ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEEE
Confidence 999864 33 34677888 34321010 1112222221 111 1368999999999999
Q ss_pred HccCCCEEEEecccC
Q 006489 551 LMMNPRILLLDEATS 565 (643)
Q Consensus 551 l~~~p~IliLDE~TS 565 (643)
+..+|++ ||++.-
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.91 E-value=2e-12 Score=129.81 Aligned_cols=140 Identities=20% Similarity=0.229 Sum_probs=98.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
.+++++.+.|.. +.+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.+.
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677666642 35899999999999 99999999999999999999875 899999998775544445566788
Q ss_pred EEccCCC-CC-cccHHHHh-hcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 477 IVSQEPV-LF-NCSIEENI-AYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 477 ~V~Q~~~-Lf-~gTireNI-~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+++|++. .+ .-++.||| .++..... ..++..+.+. ..+ ..|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-----HHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEE
Confidence 8888864 33 34677887 44321110 1112222211 111 136799999999999
Q ss_pred HHccCCCEEEEecccC
Q 006489 550 ALMMNPRILLLDEATS 565 (643)
Q Consensus 550 Al~~~p~IliLDE~TS 565 (643)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788765
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=6.6e-12 Score=132.99 Aligned_cols=169 Identities=14% Similarity=0.131 Sum_probs=108.0
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCCEEEECCEeCCCCCH-HHHhcc---cEEEccCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIER------------FYDPIKGKILLNGVPLVEISH-EHLHRK---ISIVSQEPVL 484 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g------------~~~p~~G~I~idg~~i~~~~~-~~lr~~---i~~V~Q~~~L 484 (643)
++++|.+++|||++|+|||||+++|.| ..+|+.|.|.++|..+..+.. ..-++. ..++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998843211110 000111 2356666665
Q ss_pred Ccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEe
Q 006489 485 FNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP--RILLLD 561 (643)
Q Consensus 485 f~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p--~IliLD 561 (643)
..+ |..+++ . .++...++.+..--++...-+ + ..-..+||+ .+| +|.++|
T Consensus 96 ~~~~s~~e~L--------~-~~fl~~ir~~d~il~Vvd~~~--d----~~i~~v~~~------------~dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL--------G-NAFLSHVRAVDAIYQVVRAFD--D----AEIIHVEGD------------VDPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS--------C-HHHHHHHTTCSEEEEEEECCC--T----TCSSCCSSS------------SCHHHHHHHHH
T ss_pred ccCCcHHHHH--------H-HHHHHHHHHHHHHHHHHhccc--c----ceeeeeccc------------cCcchhhhhch
Confidence 532 222211 1 123333443332111111110 1 122234554 289 999999
Q ss_pred cccCCCCHHHHHHHHHHHHHH-cC-CCeEEEEccCchhH-hhcCeEE-EEeCC-EEEEEcCh
Q 006489 562 EATSALDAESEYLVQDAMDSL-MK-GRTVLVIAHRLSTV-QSADTVA-VVSDG-EIVESGTH 618 (643)
Q Consensus 562 E~TSaLD~~te~~i~~~i~~~-~~-~~TvI~VtHrl~~i-~~aD~Ii-vl~~G-~Ive~G~~ 618 (643)
||++.+|++.-+...+.+... .+ ++|+ ++|.+..+ .-||+|. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999888888888776 44 4553 39999876 4599999 99999 88766654
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.89 E-value=1.4e-10 Score=110.88 Aligned_cols=141 Identities=20% Similarity=0.159 Sum_probs=75.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC-----------CCCEEEECCEeCCC--CCHHHHhcccEEEccCCCCCcc--cHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDP-----------IKGKILLNGVPLVE--ISHEHLHRKISIVSQEPVLFNC--SIEE 491 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p-----------~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~~Lf~g--Tire 491 (643)
+++|+|++|||||||++.+.|...+ .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 1111112223333332110000 1111
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHc-CCCccc-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCH
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISN-FPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~-lp~G~~-T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~ 569 (643)
+... .+.+.+...++. +.. -+...- -.++.+ ..|..-..+...+||++.++|+++++| |||+|.
T Consensus 111 ~~~~-----~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH-----LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH-----HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH-----HHHHHHHHHHHH------HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1000 000111111110 000 000000 011111 112111223478899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 006489 570 ESEYLVQDAMDS 581 (643)
Q Consensus 570 ~te~~i~~~i~~ 581 (643)
++...+.+.|.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 988888877754
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.89 E-value=5.8e-09 Score=103.44 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=89.7
Q ss_pred cceece-eEEeeCCCEEEEECCCCChHHHHHHHH-HcCCCCCCCEEEECCEeCCCCCHHHHh---cccEEEccCCCCCcc
Q 006489 413 MVLKGI-TLKLLSGSKIALVGPSGGGKSTIANLI-ERFYDPIKGKILLNGVPLVEISHEHLH---RKISIVSQEPVLFNC 487 (643)
Q Consensus 413 ~vL~~i-sl~i~~G~~vaivG~sGsGKSTLl~lL-~g~~~p~~G~I~idg~~i~~~~~~~lr---~~i~~V~Q~~~Lf~g 487 (643)
+.|+++ .--+++|+.+.|+|++|||||||+..+ ....+...+.+++++. .+.+.++ .++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhh---
Confidence 346665 567899999999999999999996544 4444444455555542 2233332 234444433210
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccC
Q 006489 488 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATS 565 (643)
Q Consensus 488 TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~--~~p~IliLDE~TS 565 (643)
.+|+.+.+. .. + .+..++. .+..+-+. +....+.+..++.++ .+|+++++|++++
T Consensus 83 --~~~l~~~~~--~~-~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 --KGMFAMVDA--FT-A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp --HTSEEEEEC--ST-T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred --CCcEEEEec--ch-h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 012221100 00 0 0000000 00000011 112334444455554 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCCeEEEEccCchh---------HhhcCeEEEEeC
Q 006489 566 AL--DAESEYLVQDAMDSLM--KGRTVLVIAHRLST---------VQSADTVAVVSD 609 (643)
Q Consensus 566 aL--D~~te~~i~~~i~~~~--~~~TvI~VtHrl~~---------i~~aD~Iivl~~ 609 (643)
-+ |+.....+...+.+.. .++|+|+++|.... ...||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 5533334444444332 48899999998764 356899999964
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.89 E-value=4.3e-09 Score=110.25 Aligned_cols=143 Identities=20% Similarity=0.291 Sum_probs=84.3
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE-EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG 499 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I-~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~ 499 (643)
-+++|+.+.|.|++|||||||+..++.......|.+ +++... ..+. .+.+++++.+|+ +.+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 588999999999999999999888876654444433 333311 1111 111122221111 111100
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEecccCCC----------
Q 006489 500 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSAL---------- 567 (643)
Q Consensus 500 ~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~--p~IliLDE~TSaL---------- 567 (643)
. +. .|-+.+++++.++ |+++|+||+++-+
T Consensus 122 -~------------------------------------~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 122 -D------------------------------------TG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -S------------------------------------SH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -C------------------------------------CH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 0 11 2345578888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH-----cCCCeEEEEccCch----------------hH-hhcCeEEEEeCCEEEEEcC
Q 006489 568 DA---ESEYLVQDAMDSL-----MKGRTVLVIAHRLS----------------TV-QSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 568 D~---~te~~i~~~i~~~-----~~~~TvI~VtHrl~----------------~i-~~aD~Iivl~~G~Ive~G~ 617 (643)
|+ ..++.+.+.++++ ..++|+|+++|-.. .+ ..||.++.+..+++...|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1122333444333 13899999999543 13 4689999998877655444
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.89 E-value=7.4e-11 Score=128.66 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=96.8
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHc--CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc---cc---
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIER--FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN---CS--- 488 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g--~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~---gT--- 488 (643)
.+++++.++..+.|+|+|||||||++++|.. ++.++.|++.+.+.|.+......+.. -|+++. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778889999999999999999999999876 67777799988888877655444431 122221 00
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH----------HHHHHHccCCC-E
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV----------AIARALMMNPR-I 557 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi----------alARAl~~~p~-I 557 (643)
..+++..... ++ +++ .+.++..++.+. . +|+..+. ..+||||+||. ++|+++...|. +
T Consensus 232 a~~~L~~~~~-Em-erR-~~ll~~~Gv~~i-~----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 232 AANALRWCVN-EM-ERR-YKLMSALGVRNL-A----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHHH-HH-HHH-HHHHHHTTCSSH-H----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHHH-HH-HHH-HHHHHHcCCccH-H----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 1112211100 00 111 133444443221 1 1211111 13578887752 46778888898 7
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHH---cC--CCeEEEEccCch
Q 006489 558 LLLDEATSALDAESEYLVQDAMDSL---MK--GRTVLVIAHRLS 596 (643)
Q Consensus 558 liLDE~TSaLD~~te~~i~~~i~~~---~~--~~TvI~VtHrl~ 596 (643)
+++||+++.+|... ..+.+.|.++ .+ |.++|++|||++
T Consensus 301 lvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999998432 3344444322 22 779999999998
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.87 E-value=4.3e-09 Score=114.63 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=112.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhccc-EEEccCCCCCcccHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKI-SIVSQEPVLFNCSIE 490 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i-~~V~Q~~~Lf~gTir 490 (643)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+. +.+..+++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999988766555 5666553 44555555443 1111100 1
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccCCCC
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALD 568 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~--~~p~IliLDE~TSaLD 568 (643)
+++.-| ..++++..++.+.+ +.+...|- .+-+ -..+|.+|.+ +.||++. .+|+++|+|+++.-.+
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 223323 35565554443332 22333231 1112 2468999876 6777776 5799999999999874
Q ss_pred HH-----HH---HHHHHHHHHHc--CCCeEEEEcc-----------Cch---------hHhhcCeEEEEeCCEE
Q 006489 569 AE-----SE---YLVQDAMDSLM--KGRTVLVIAH-----------RLS---------TVQSADTVAVVSDGEI 612 (643)
Q Consensus 569 ~~-----te---~~i~~~i~~~~--~~~TvI~VtH-----------rl~---------~i~~aD~Iivl~~G~I 612 (643)
.. .. ..+.+.|+.+. .++|+|+++| |+. .-..||.|+.|..++.
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 31 11 34444555432 3899999999 132 2346999999987654
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.85 E-value=6.7e-11 Score=116.00 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=51.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-------
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH------- 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~------- 468 (643)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765442 1 456666 8999999999999999999999999999999999998843332
Q ss_pred -HHHhcccEEEccC
Q 006489 469 -EHLHRKISIVSQE 481 (643)
Q Consensus 469 -~~lr~~i~~V~Q~ 481 (643)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999984
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.85 E-value=2.2e-10 Score=108.62 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=63.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKIL----------LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||+++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999874 455554 36767777777887764 57889999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHH
Q 006489 492 NIAYGCDGKASSADIENAAKM 512 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~ 512 (643)
| .+|.+ .+.++++++.
T Consensus 80 n-~yg~~----~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHEQ 95 (180)
T ss_dssp E-EEEEE----HHHHHHHHHT
T ss_pred c-ccccc----HHHHHHHHHC
Confidence 9 56632 5556666653
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.84 E-value=1.2e-10 Score=131.55 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=103.1
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC-CEEEECCEeCCCCCHHHHhcccEEEccCC--------
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLNGVPLVEISHEHLHRKISIVSQEP-------- 482 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-------- 482 (643)
..+++++++.+++|+.+.|+||+|+|||||+++|.++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358899999999999999999999999999999999999887 8899988766543 34688887754
Q ss_pred --------------CCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 483 --------------VLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 483 --------------~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
|.| ..++.+|+...+. ......+... ......+.+..+ +.. ......+|+|++|++..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGEEC
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccccC
Confidence 222 2344444443321 0000000000 000011111111 000 01223589999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHH
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~ 581 (643)
++....++.+|+|||... |++.....+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 799988888888874
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.83 E-value=1.2e-09 Score=124.16 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=94.3
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhh--
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA-- 494 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~-- 494 (643)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456889999999999999999999999987655 67999 7999999999999999999999999999888888884
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHH
Q 006489 495 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574 (643)
Q Consensus 495 ~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~ 574 (643)
.|.. ++ ..++..+++.+ +..++++| |++.+|+.++..
T Consensus 82 pG~~-~f-~~~~~~~l~~a----------------------------------------d~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 82 PGYG-DF-VGEIRGALEAA----------------------------------------DAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp CCSG-GG-HHHHHHHHHHC----------------------------------------SEEEEEEE-TTTCSCHHHHHH
T ss_pred CCcc-ch-HHHHHHHHhhc----------------------------------------CcEEEEEc-CCcccchhHHHH
Confidence 2311 11 12333444433 34456666 777777766655
Q ss_pred HHHHHHHHcCCCeEEEEccCchh
Q 006489 575 VQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 575 i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
+..+.. .+.++|+|.|..+.
T Consensus 119 ~~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 WTVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHH---TTCCEEEEEECGGG
T ss_pred HHHHHH---ccCCEEEEecCCch
Confidence 443322 25666667776654
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.74 E-value=1e-09 Score=106.28 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=45.0
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 497 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~ 497 (643)
=++++|+.++|+|++||||||++++|.+.++ .+.+++||++++++ +|+.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3578899999999999999999999999875 48899999999986 6776643
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.74 E-value=8.3e-11 Score=124.13 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=88.7
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
.+++++|+++++|+.++|+||+|||||||+++|.+.+ +|++..-. .+.+.++..+++++|...+ +.|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~----l~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLV----VFED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCE----EETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHH----HHHH
Confidence 5799999999999999999999999999999999964 68776511 1112234458889998764 3445
Q ss_pred hhcCCC--CCCCH-HHHHHHHHHcCchHHHH-----------------cCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 493 IAYGCD--GKASS-ADIENAAKMANAHDFIS-----------------NFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 493 I~~~~~--~~~~~-~~i~~al~~a~l~~~i~-----------------~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+....+ ..... ..+. ....+.+.+. -+|.| .+.++-..+++|.+||++.+.+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~ 298 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFR 298 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECC
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccC
Confidence 544321 00000 0000 1112222221 01112 133445568999999999999999
Q ss_pred cCCCEEE-EecccC
Q 006489 553 MNPRILL-LDEATS 565 (643)
Q Consensus 553 ~~p~Ili-LDE~TS 565 (643)
.+|++++ ||+|+.
T Consensus 299 ~~pDLliyLd~~~~ 312 (377)
T 1svm_A 299 PKDYLKHCLERSEF 312 (377)
T ss_dssp CCHHHHHHHHTCTH
T ss_pred CCCCeEEEEeCCHH
Confidence 9999999 999997
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.68 E-value=6.7e-09 Score=99.70 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=72.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC-----CCC------CCEEEECCEeCC----CC-CHHHHhcccEEEccCCC--C--Cc
Q 006489 427 KIALVGPSGGGKSTIANLIERFY-----DPI------KGKILLNGVPLV----EI-SHEHLHRKISIVSQEPV--L--FN 486 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~-----~p~------~G~I~idg~~i~----~~-~~~~lr~~i~~V~Q~~~--L--f~ 486 (643)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +. ..+.++.......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 233 578999997652 22 22333333333333321 1 12
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHc-CCCccc-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Q 006489 487 CSIEENIAYGCDGKASSADIENAAKMANAHDFISN-FPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 564 (643)
Q Consensus 487 gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~-lp~G~~-T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~T 564 (643)
.+-.. +.+++...++. +.. .+.+.- -.++.+ ..|..-.......||++.++|++.++| |
T Consensus 87 ~~~~~----------s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHL----------TYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHH----------HHHTHHHHHHH------HHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHH----------HHHHHHHHHHH------HHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 11110 00111111110 000 000000 011111 111110111245699999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 006489 565 SALDAESEYLVQDAMDSL 582 (643)
Q Consensus 565 SaLD~~te~~i~~~i~~~ 582 (643)
||+|.++-..+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999777777776543
No 174
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.9e-09 Score=104.65 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=59.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKIL----------LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 444443 346566666777777665 5777888888887
Q ss_pred HhhcCCCCCCCHHHHHHHHHH
Q 006489 492 NIAYGCDGKASSADIENAAKM 512 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~ 512 (643)
| .+|.+ .+.+.++++.
T Consensus 83 ~-~yg~~----~~~i~~~l~~ 98 (208)
T 3tau_A 83 N-YYGTP----LEYVEEKLAA 98 (208)
T ss_dssp E-EEEEE----HHHHHHHHHT
T ss_pred c-cCCCc----HHHHHHHHHc
Confidence 7 46632 4445555543
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.56 E-value=2.7e-08 Score=104.97 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=36.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc--CCCCCCCEEEECCE
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER--FYDPIKGKILLNGV 461 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g--~~~p~~G~I~idg~ 461 (643)
.+|++++++++ .|+|||++|||||||++.|.| ++++.+|.++-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47899999998 999999999999999999999 77888887764443
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.56 E-value=8.6e-08 Score=104.10 Aligned_cols=114 Identities=25% Similarity=0.381 Sum_probs=75.8
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
..++++++++++| +.|+||+|+|||||++++.+.... .+-++ +..+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~~- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGSD- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGGG-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHHH-
Confidence 4577788888887 889999999999999999985311 01111 0000
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC-------
Q 006489 493 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS------- 565 (643)
Q Consensus 493 I~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS------- 565 (643)
++..+ +| .|++++|-.+++|....|.|+++||+.+
T Consensus 85 -------------------------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 85 -------------------------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp -------------------------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred -------------------------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 00000 11 2788999999999999999999999944
Q ss_pred ---CCCHHHHHHHHHHHHHH-----cCCCeEEEEccCchhH
Q 006489 566 ---ALDAESEYLVQDAMDSL-----MKGRTVLVIAHRLSTV 598 (643)
Q Consensus 566 ---aLD~~te~~i~~~i~~~-----~~~~TvI~VtHrl~~i 598 (643)
+.|.+.++.+.+.+..+ ..+..+|..||+++.+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666555555555433 1356888999998654
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.54 E-value=5.4e-09 Score=115.60 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=64.4
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEE-ECCEeCCC-------CCH---HHHhcccEEEccCCCCCccc
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KIL-LNGVPLVE-------ISH---EHLHRKISIVSQEPVLFNCS 488 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~I~-idg~~i~~-------~~~---~~lr~~i~~V~Q~~~Lf~gT 488 (643)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.+ ++. ..+++++++|+|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999887 774 99976632 332 23456789999872 4
Q ss_pred HHHHhhcCCCC---CCCHHHHHHHHHHcC
Q 006489 489 IEENIAYGCDG---KASSADIENAAKMAN 514 (643)
Q Consensus 489 ireNI~~~~~~---~~~~~~i~~al~~a~ 514 (643)
..+|+.+.... ....++++++++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 56676554211 122455677777665
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.54 E-value=6.5e-09 Score=98.32 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=63.1
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCE--eCCCCC----HHHHhcccEEEccCCC------
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV--PLVEIS----HEHLHRKISIVSQEPV------ 483 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~--~i~~~~----~~~lr~~i~~V~Q~~~------ 483 (643)
+++++++.+| .++|+|+||||||||+++|.++..+..|...-.+. ++-... ....+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 5788999999 99999999999999999999988777765432221 110000 0023457899999863
Q ss_pred ----CCcccHHHH----hhcCCCCCCCHHHHHHHHHHcCchH
Q 006489 484 ----LFNCSIEEN----IAYGCDGKASSADIENAAKMANAHD 517 (643)
Q Consensus 484 ----Lf~gTireN----I~~~~~~~~~~~~i~~al~~a~l~~ 517 (643)
.+..++..+ +.... ...+.+++.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCCC
Confidence 122222111 11111 1356778888888877753
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.53 E-value=9.5e-09 Score=99.09 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=51.2
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC-----------CCccc
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV-----------LFNCS 488 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-----------Lf~gT 488 (643)
+++++|+.++|+|+|||||||++++|.+++.|..| +.+ +...++.. ...+..++|++|++. ++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977655 222 22222211 112234778877653 34445
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHH
Q 006489 489 IEENIAYGCDGKASSADIENAAK 511 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~ 511 (643)
+++| .+| ...+++.++++
T Consensus 78 ~~~~-~~g----~~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGN-YYG----TPVQYVKDTMD 95 (207)
T ss_dssp ETTE-EEE----EEHHHHHHHHH
T ss_pred ECCe-ecC----CCHHHHHHHHH
Confidence 5555 243 22455666554
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.53 E-value=9e-09 Score=102.53 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=35.9
Q ss_pred cEEEEeE-EEECCCCCCCcceeceeEEeeC---CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 396 EVELDDV-WFAYPSRPNHMVLKGITLKLLS---GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 396 ~I~~~~v-sf~Y~~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++++|+ +|+|.+ +.++|+|+||+|++ |+.++|+|++||||||++++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999998855
No 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.49 E-value=2.8e-08 Score=104.64 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=83.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC-----------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC----CcccHH-
Q 006489 427 KIALVGPSGGGKSTIANLIERFYD-----------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL----FNCSIE- 490 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~-----------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L----f~gTir- 490 (643)
.|+|||++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 399999999999999999999875 67799999997653 33456666664431 222322
Q ss_pred ----HHhhcCCC-CCCC---HHHH---HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH----HHH-ccC
Q 006489 491 ----ENIAYGCD-GKAS---SADI---ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA----RAL-MMN 554 (643)
Q Consensus 491 ----eNI~~~~~-~~~~---~~~i---~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA----RAl-~~~ 554 (643)
|++.+.-+ .+.. ++.+ .+.++..++. ..| --.|+.+--.+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 22222111 0111 1111 2233322211 122 1122333334677889988877 776 444
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLM 583 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~ 583 (643)
|++ +||||+|.++-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 554 8999999998888888876543
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.46 E-value=5.2e-09 Score=100.81 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=45.4
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE--EECCEeCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI--LLNGVPLV 464 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~ 464 (643)
....+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346788888899999999999999999999999999987 78988 88885543
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=2.2e-08 Score=96.39 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=43.6
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL 484 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L 484 (643)
.++.++|+.++|+|+||||||||+++|.+.+ |.+.+||.++..- ....+..+++++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccc
Confidence 3667899999999999999999999999987 8999999776421 11222356778776543
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=8e-08 Score=92.31 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=25.1
Q ss_pred ECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 405 AYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 405 ~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|++.+..+.++|+||++++|+.++|+|++||||||+++.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666678999999999999999999999999999999999876
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.42 E-value=3.4e-08 Score=102.04 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=55.8
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHH-----hcccEEE-ccCC
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHL-----HRKISIV-SQEP 482 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~l-----r~~i~~V-~Q~~ 482 (643)
++++||++++|+.++|+|++||||||++..|++.+.+..|+|.+.+.|+..... ..| +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888889999999999999999999999999999999999999888765431 334 5668888 5654
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.42 E-value=5.7e-09 Score=114.02 Aligned_cols=140 Identities=20% Similarity=0.225 Sum_probs=97.0
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++++...|. .+.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3445444442 235789999999999 99999999999999999999874 7899999988876555556667888
Q ss_pred EccCCC-CCc-ccHHHHh-hcCCCCC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 478 VSQEPV-LFN-CSIEENI-AYGCDGK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 478 V~Q~~~-Lf~-gTireNI-~~~~~~~----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
++|++. .+. -.+-|+| .++.... ...++..+.+.. .+. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888875 233 3567788 3432111 012222222221 121 257888889899999
Q ss_pred HccCCCEEEEecccCC
Q 006489 551 LMMNPRILLLDEATSA 566 (643)
Q Consensus 551 l~~~p~IliLDE~TSa 566 (643)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9999987 8888753
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.36 E-value=1.6e-07 Score=90.48 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh---HhhcCeEEEEeC
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST---VQSADTVAVVSD 609 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~---i~~aD~Iivl~~ 609 (643)
+.|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+.. .+.||.+++++-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 688999999999999888754333 3455666666666655443 45688888887754 467999999853
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.26 E-value=2.6e-08 Score=102.67 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=74.9
Q ss_pred cceeceeEEeeCCC------EEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCC
Q 006489 413 MVLKGITLKLLSGS------KIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVL 484 (643)
Q Consensus 413 ~vL~~isl~i~~G~------~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L 484 (643)
..|++++..+.+++ .+||+|+||||||||+++|.+++.+ .+| .++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeecccc
Confidence 46777777777766 8999999999999999999999874 444 45566677666
Q ss_pred CcccHHHHh----hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcc---cccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 006489 485 FNCSIEENI----AYGCDGKASSADIENAAKMANAHDFISNFPEKY---QTFVGERGVRLSGGQKQRVAIARALMMNPRI 557 (643)
Q Consensus 485 f~gTireNI----~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~---~T~vge~G~~LSGGQrQRialARAl~~~p~I 557 (643)
++...++.. .+|.|..++.+.+.+.++. +..|- .-++ +|-+..+|+.-+......|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~---------L~~g~~~v~~P~------yd~~~~~r~~~~~~~v~~~dI 199 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNA---------IKSGQRNVRIPV------YSHHYYDIVRGQYEIVDQPDI 199 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHH---------HHTTCSSEEEEE------EETTTTEEEEEEEEEECSCSE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHHHHHh---------hhccccccccch------hhhhccccccCceeeccCCCE
Confidence 554444432 1333434455555444433 22332 1111 111222333223345678999
Q ss_pred EEEecccCCCCH
Q 006489 558 LLLDEATSALDA 569 (643)
Q Consensus 558 liLDE~TSaLD~ 569 (643)
+|++.+..-.|.
T Consensus 200 VIvEGi~lL~~~ 211 (321)
T 3tqc_A 200 VILEGLNILQTG 211 (321)
T ss_dssp EEEECTTTTCCC
T ss_pred EEEEcccccccc
Confidence 999988776554
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.26 E-value=1.7e-07 Score=97.37 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=49.4
Q ss_pred CCcEEEEeEEEECCCCCCCccee--------------ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLK--------------GITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~--------------~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++.|+|+|++|.||.. ..+|+ |+++.|.+||+++|+|++|+|||||++.|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999964 56888 899999999999999999999999999999975
No 190
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.25 E-value=1.5e-06 Score=91.48 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEe-cccCCCCHHHHHHHHHHHHHHcCCCeEEEEc--cCch
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLD-EATSALDAESEYLVQDAMDSLMKGRTVLVIA--HRLS 596 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLD-E~TSaLD~~te~~i~~~i~~~~~~~TvI~Vt--Hrl~ 596 (643)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 357999999887 66666777888999 9999999998888888887766688999999 7764
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.24 E-value=7.1e-07 Score=92.57 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+++|+.+.|.|++|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999999887653
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.24 E-value=6.5e-06 Score=85.85 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=44.1
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE-EECCEeCCCCCHHHHhcccEEEccCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNGVPLVEISHEHLHRKISIVSQEP 482 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I-~idg~~i~~~~~~~lr~~i~~V~Q~~ 482 (643)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 488999999999999999999999999988777765 66653322 2 22555677666543
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.23 E-value=1.3e-06 Score=101.00 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccC-CCCHHHHHHHHHHHHHHcCC-CeEEE-EccCchhHh
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQDAMDSLMKG-RTVLV-IAHRLSTVQ 599 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TS-aLD~~te~~i~~~i~~~~~~-~TvI~-VtHrl~~i~ 599 (643)
-+|+|+.+|..++++++.+++++|+|||.. .||.+.-..+.+.+....++ +++++ .||..+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89988666666666665544 45555 488876654
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.22 E-value=2e-06 Score=91.88 Aligned_cols=163 Identities=20% Similarity=0.142 Sum_probs=97.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 475 (643)
+..++++..|.+. . ++++|+ +|+.++++|++||||||++..|++.+.+..|.|.+.+.|+......+ ++..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3344556666532 1 567777 89999999999999999999999999999999999887765433221 2110
Q ss_pred EEEccCCCCCcccHHHHhhcCC-CCCCCHHHH-HHHHHHcCchHHHHcC-CCcccccccCCCCCCC---HHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNCSIEENIAYGC-DGKASSADI-ENAAKMANAHDFISNF-PEKYQTFVGERGVRLS---GGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~-~~~~~~~~i-~~al~~a~l~~~i~~l-p~G~~T~vge~G~~LS---GGQrQRialAR 549 (643)
.=+.|+.+.. ....+..++ .+++ +.+ ..+||..|-+..-.++ .-..+...++|
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~~~~l---------~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~ 207 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIRRRVE---------EKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHHHHHH---------HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHHHHHH---------HHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhh
Confidence 0112332211 112334444 2233 332 2567766655433332 34567778888
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEcc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 593 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtH 593 (643)
++..++-++++| ++++.|+.... +.+... -+.+-|++||
T Consensus 208 ~~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 208 VLGPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred ccCCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 886666677787 55565554221 233322 2457777776
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.20 E-value=1.3e-06 Score=90.43 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=69.1
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 493 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI 493 (643)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+. +.|++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEe--------------
Confidence 466665578999999999999999999998887654432233 33321
Q ss_pred hcCCCCCCCHHHHHHHHH--HcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCC
Q 006489 494 AYGCDGKASSADIENAAK--MANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al~--~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD 568 (643)
.+.+.+++..-+- .+++. ...+-. | .||++++||++.|...+.+++++|.|+|...+|
T Consensus 82 -----lEms~~ql~~Rlls~~~~v~--~~~l~~---------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 -----LEMSAEQLALRALSDLTSIN--MHDLES---------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp -----SSSCHHHHHHHHHHHHHCCC--HHHHHH---------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred -----CCCCHHHHHHHHHHHhhCCC--HHHHhc---------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1345555433221 12221 111111 1 689999999999999999999999998865544
No 196
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.17 E-value=6.9e-08 Score=95.10 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=49.9
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC------CHHH----HhcccEEEccCCCCCc
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI------SHEH----LHRKISIVSQEPVLFN 486 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------~~~~----lr~~i~~V~Q~~~Lf~ 486 (643)
-+.+.++|++++|+|++||||||++++|.++ +|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 79999999876422 1111 2456888888876654
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.15 E-value=6.5e-07 Score=89.80 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEe
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 608 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~ 608 (643)
|++|||||..+|++++||||| |+++...+.+ ....++|+++++|..+....||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9887554433 3346899999999999888889887664
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.00 E-value=1.2e-06 Score=97.42 Aligned_cols=47 Identities=30% Similarity=0.493 Sum_probs=42.3
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
.+++++++++ +|+.++++||+|+|||||+++|.+...+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999988888887766
No 199
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.99 E-value=5.2e-08 Score=93.55 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=26.5
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
...|+|+|++||||||+++.|... |...+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666765
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.99 E-value=1.3e-06 Score=83.90 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=41.0
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH 468 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 468 (643)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999998889999887766555443
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=6.1e-06 Score=88.23 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=35.4
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 463 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i 463 (643)
++..++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888888766664
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.95 E-value=1.7e-06 Score=80.87 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=33.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 464 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 464 (643)
++|+.++|+|++||||||++++|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999886654
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=3.1e-05 Score=81.77 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=32.6
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc----CCCeEEEEccCchhH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVIAHRLSTV 598 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~----~~~TvI~VtHrl~~i 598 (643)
.+|.++++||+... |......+.+.+.+.. .+.++|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999887 7776666666664332 366888899988543
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.85 E-value=2.9e-05 Score=80.99 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=25.9
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+++|+.+.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999998875
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=5.8e-05 Score=76.76 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHH----------HHHHHHHHHHHcC-----CCeEEEEccCchh-----
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAES----------EYLVQDAMDSLMK-----GRTVLVIAHRLST----- 597 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~t----------e~~i~~~i~~~~~-----~~TvI~VtHrl~~----- 597 (643)
++++++|-.+++|...+|.++++||+.+-++... ...+...+..... +..+|..|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988765421 2233344443321 2356677887643
Q ss_pred HhhcCeEEEEe
Q 006489 598 VQSADTVAVVS 608 (643)
Q Consensus 598 i~~aD~Iivl~ 608 (643)
.+++|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34677776653
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.83 E-value=2e-05 Score=81.27 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=30.6
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777666899999999999999999999888753
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.79 E-value=2.1e-06 Score=80.69 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=33.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCC--EEEECCEeC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGVPL 463 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G--~I~idg~~i 463 (643)
++|+.++|+|++||||||++++|.+.+++ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 67 777776444
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.77 E-value=0.00013 Score=71.81 Aligned_cols=28 Identities=39% Similarity=0.426 Sum_probs=24.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
No 209
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.74 E-value=1.4e-05 Score=81.87 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE-CCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL-NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS 502 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~ 502 (643)
++.+|+|||++|+|||||++.|+|.- +.+ .+.+- ...+...++++++..- +.+.+-....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~--------i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQ--------AIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEE--------EEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCee--------EEEEECcCCC
Confidence 34489999999999999999999863 212 11110 1123456777776531 2222111222
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccc--cCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccCCCCHHH-HHHHHH
Q 006489 503 SADIENAAKMANAHDFISNFPEKYQTFV--GERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAES-EYLVQD 577 (643)
Q Consensus 503 ~~~i~~al~~a~l~~~i~~lp~G~~T~v--ge~G~~LSGGQrQRialARAl~--~~p~IliLDE~TSaLD~~t-e~~i~~ 577 (643)
. +....+...-.......+. ..|..+ -+... +|+|++ .+++++. ..|.|+++ +-+|... ...+.+
T Consensus 68 ~-~~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 68 M-EEKRAINRLMNKAASSSIG-DVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp H-HHHHHHHHHHTCCTTSCCC-CEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred c-cchhhHHHHHHHHHHHHHh-cCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 1 1111111100000001111 112111 12222 899986 5666665 67888888 5777765 455656
Q ss_pred HHHHHcC--C--CeEEEEccCchhHh
Q 006489 578 AMDSLMK--G--RTVLVIAHRLSTVQ 599 (643)
Q Consensus 578 ~i~~~~~--~--~TvI~VtHrl~~i~ 599 (643)
.+.++.+ + .++.+.||.-.-+.
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHH
Confidence 6655432 2 35556677655443
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.69 E-value=7.8e-06 Score=94.94 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.1
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998753
No 211
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.67 E-value=6e-05 Score=81.39 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=43.0
Q ss_pred cc-CCCEEEEecccCCCCH-HHHHHHHHHHHHHc-CCCeEEEEccCch-hHhh-cCeEEE-EeCCEEEEEcCh
Q 006489 552 MM-NPRILLLDEATSALDA-ESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQS-ADTVAV-VSDGEIVESGTH 618 (643)
Q Consensus 552 ~~-~p~IliLDE~TSaLD~-~te~~i~~~i~~~~-~~~TvI~VtHrl~-~i~~-aD~Iiv-l~~G~Ive~G~~ 618 (643)
++ ++++|++||+..-.+. .+...+...+.... .++++|+.||+.. .+.. .+++.- ++.|.+++.+.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 34 8999999999988775 46777777776644 4688999999842 2211 122221 345666655544
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=8.8e-06 Score=84.82 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=37.3
Q ss_pred cceeceeEEeeCCCE--EEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 413 MVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 413 ~vL~~isl~i~~G~~--vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
.+++.++..++.|+. +.++||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 578889999999998 999999999999999999998766544
No 213
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.66 E-value=0.12 Score=57.45 Aligned_cols=174 Identities=11% Similarity=0.063 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 126 LIVIVGSVCTALRAWLFSSASERVVARLRKNLFSH----LINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALR 201 (643)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~----ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~ 201 (643)
+..++..+..++..+...++..++..++-.++.+. .-+.+....-++-+.|+- .+..- +...+...+...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~-~i~~~---~~~~~~~~~~~~~~ 150 (587)
T 3qf4_A 75 IGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVT-QLQNL---VMMLLRIVVRAPLL 150 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHH-HHHHH---HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHH
Confidence 33444445555555666666666666666665442 333444433333222322 12111 12222222223333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH-H
Q 006489 202 NLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE-I 280 (643)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~-~ 280 (643)
.+..+++.+.+-+.......+++.+.+++...+.+...+..++..+...+. .....-....++-++....-..+... .
T Consensus 151 ~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 229 (587)
T 3qf4_A 151 FVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEV-NRVVRENLLGVRVVRAFRREEYENENFR 229 (587)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 333333333333333333333333333444445555555555544444433 33444444566666666665554433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 281 SRYSEKVDETLKLGLQQAKVVGLF 304 (643)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (643)
+..++..+...+..........+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~ 253 (587)
T 3qf4_A 230 KANESLRRSIISAFSLIVFALPLF 253 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 214
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.60 E-value=1.4e-05 Score=76.37 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=37.4
Q ss_pred EEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC----CC----CCCCEEEECCE
Q 006489 403 WFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF----YD----PIKGKILLNGV 461 (643)
Q Consensus 403 sf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~----~~----p~~G~I~idg~ 461 (643)
+|+|++. ..+++++|++.+++ +|+++|++|+|||||++.+.+- +. +..+.+.++|.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 4667754 46899999998877 6899999999999999999862 22 23455666654
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=0.0002 Score=71.14 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=28.7
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
.++++++..++| +.|+||+|+|||||++++.+.+... -+.+++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 345555555555 9999999999999999999976421 355555
No 216
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.59 E-value=2.7e-05 Score=84.12 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=44.2
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCC------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHH
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYD------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEEN 492 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTireN 492 (643)
-+++|||++|+|||||++.|+|... |.+|.+.++|.++.-++..-.++...+.+|....|. -+..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 678999999998765665555666666667666554 234455
Q ss_pred hhc
Q 006489 493 IAY 495 (643)
Q Consensus 493 I~~ 495 (643)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.56 E-value=0.00029 Score=73.55 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.5
Q ss_pred cceeceeEE---eeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 413 MVLKGITLK---LLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 413 ~vL~~isl~---i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+-|+.+ |. +++|+.+.|.|++|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 33 88999999999999999999988876543
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.54 E-value=2.3e-05 Score=76.85 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=31.9
Q ss_pred eeceeEEee---CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE
Q 006489 415 LKGITLKLL---SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 458 (643)
Q Consensus 415 L~~isl~i~---~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i 458 (643)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 556666665 8999999999999999999999999987 666654
No 219
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=1e-05 Score=84.39 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=46.4
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 464 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 464 (643)
.+++++++++++|..++|+|++|+|||||++.|++.+.+..|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666654
No 220
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.53 E-value=2.1e-05 Score=82.70 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPI 452 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~ 452 (643)
+++..+.|+||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987654
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.53 E-value=1.4e-05 Score=76.76 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=26.4
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
..+|..++|+|+||||||||++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998774
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.52 E-value=1.1e-05 Score=77.84 Aligned_cols=41 Identities=34% Similarity=0.335 Sum_probs=37.4
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC--EEEECC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNG 460 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G--~I~idg 460 (643)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 55789999999999999999999999999987888 888886
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=3.9e-05 Score=71.21 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56654
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.47 E-value=7.3e-06 Score=80.31 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=48.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHH---cCCCCCCCEE--------EECCEeCCCCC-HHHHhcccEEEc------cCCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKI--------LLNGVPLVEIS-HEHLHRKISIVS------QEPVLF 485 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~---g~~~p~~G~I--------~idg~~i~~~~-~~~lr~~i~~V~------Q~~~Lf 485 (643)
+...++|+|||||||||+++.|. |+...+.|.+ .-.|.++.+.. ...+..++.+.. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 5544556665 24566665543 455666666665 455666
Q ss_pred cccHHHHhh
Q 006489 486 NCSIEENIA 494 (643)
Q Consensus 486 ~gTireNI~ 494 (643)
...|.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 666666653
No 225
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.00013 Score=71.64 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=73.7
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccHHHHhhcCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDG 499 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTireNI~~~~~~ 499 (643)
.+.+|+.+.++|++||||||++.+++.......|. ...+.++.|.|... .-++.+|+.-....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34679999999999999999888765322111111 12567777777654 44667777432111
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCccccc----ccCCCCC---CCHHHHHHHHHHHHHccCCCEEEEecccC-CCCHHH
Q 006489 500 KASSADIENAAKMANAHDFISNFPEKYQTF----VGERGVR---LSGGQKQRVAIARALMMNPRILLLDEATS-ALDAES 571 (643)
Q Consensus 500 ~~~~~~i~~al~~a~l~~~i~~lp~G~~T~----vge~G~~---LSGGQrQRialARAl~~~p~IliLDE~TS-aLD~~t 571 (643)
... ...|+... ....+.+ -+.|+-.+. .+.-+++-+++|+||+=. .+|...
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHH
Confidence 110 01111111 1111111 245665555 344689999999999976 477765
Q ss_pred HHHHHHHHHHHcCCCeEEE
Q 006489 572 EYLVQDAMDSLMKGRTVLV 590 (643)
Q Consensus 572 e~~i~~~i~~~~~~~TvI~ 590 (643)
.....+.+....++..+|+
T Consensus 195 ~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhhCCCCeEEE
Confidence 5444445544444443333
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.41 E-value=3.3e-05 Score=80.74 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=37.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 465 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 465 (643)
+++..|+|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578999999999999999999999998889999888877654
No 227
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.41 E-value=8.4e-05 Score=70.21 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=20.9
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
+++++|++.++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 688999988776 889999999999999999997
No 228
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=0.00014 Score=75.05 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
++..+.|.||+|+|||||++.+.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999987654
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00017 Score=68.78 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPI 452 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~ 452 (643)
..+.|.|++|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.35 E-value=0.00011 Score=68.33 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++|.+|+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.32 E-value=0.00026 Score=72.26 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
..+.++||+|+||||++++|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887666643
No 232
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.29 E-value=1.1e-05 Score=76.97 Aligned_cols=70 Identities=23% Similarity=0.352 Sum_probs=38.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC------CCCCCEEEECCE--eCCCCC--------HHHHhcccEEEccCCCCCcccHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFY------DPIKGKILLNGV--PLVEIS--------HEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~------~p~~G~I~idg~--~i~~~~--------~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
.|+|+|++||||||+++.|...+ +|..|...++.. +....+ .+.++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 68999999999999999999843 333332221110 000000 00123334566777888999998
Q ss_pred HHhhcC
Q 006489 491 ENIAYG 496 (643)
Q Consensus 491 eNI~~~ 496 (643)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 888763
No 233
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.25 E-value=0.00014 Score=70.88 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
++..+.|+||+|+|||||++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999877643
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.24 E-value=0.00061 Score=68.59 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.0
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++++.-+.|.||+|+|||||++.+...+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4577889999999999999999999875
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.22 E-value=0.00062 Score=73.47 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=31.0
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666655589999999999999999999988877554
No 236
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00015 Score=68.22 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.8
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 237
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.19 E-value=0.00037 Score=75.54 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~ 599 (643)
.|.+-...++..+++++++|+......-.......+.+.+++ .++.+|+|.+..+...
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 488888899999999999887655444333444456566654 5789999999887653
No 238
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.15 E-value=0.00058 Score=70.34 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=24.9
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHc
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988875
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.00017 Score=70.03 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 598 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i 598 (643)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 67777777777776544466788888876543
No 240
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.06 E-value=0.1 Score=58.10 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=56.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 64 LAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFS 143 (643)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (643)
.+.++.+.....+++.++..++..+.+.+...++..+.+.-..... ......+....+.+.++.++..++..+..++..
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHA-LTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666667777777777777777777766432110000 000111112223444444445556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 006489 144 SASERVVARLRKNLFSHLINQ 164 (643)
Q Consensus 144 ~~~~~~~~~lr~~~~~~ll~~ 164 (643)
....++..++..++-.++++.
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ 103 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNH 103 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888877776543
No 241
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00012 Score=76.07 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=33.2
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888776555567777777653
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.05 E-value=8e-05 Score=75.88 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=43.1
Q ss_pred ec-eeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC
Q 006489 416 KG-ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI 466 (643)
Q Consensus 416 ~~-isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 466 (643)
++ ++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 35 677766 999999999999999999999999998889999888776543
No 243
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.03 E-value=0.00036 Score=63.34 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.4
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHH
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
+.++++.+| ..+|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 88999999999999999986
No 244
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.02 E-value=0.00062 Score=69.42 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=31.2
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
+.++++..+.|.||+|+|||||++++.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999999763 34444443
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00017 Score=67.82 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=33.3
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE-EECC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNG 460 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I-~idg 460 (643)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 346899999999999999999999999887766665 4444
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.00 E-value=0.00022 Score=67.26 Aligned_cols=46 Identities=35% Similarity=0.535 Sum_probs=35.7
Q ss_pred EEEECCCCChHHHHHHHHHcCC-------------CCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 428 IALVGPSGGGKSTIANLIERFY-------------DPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 428 vaivG~sGsGKSTLl~lL~g~~-------------~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
+.|+||||||||||++.|+..+ +|-.|++ ||+|.--++.+.+.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH
Confidence 7899999999999999997654 3456764 78887777777776543
No 247
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.98 E-value=0.00032 Score=73.90 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.7
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCCEEEECCE
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERF-----------YDPIKGKILLNGV 461 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~-----------~~p~~G~I~idg~ 461 (643)
.++.|.+++|||++|+|||||++.|.|. .+|..|.|.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 6788898888763
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.95 E-value=0.0024 Score=57.33 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+.+.-|.|.|++|+|||++++.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45677999999999999999999887654
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.0002 Score=71.11 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=33.6
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 463 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i 463 (643)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+|+-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456778999999999999999999998875 36678888443
No 250
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.93 E-value=7.2e-05 Score=78.54 Aligned_cols=58 Identities=28% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
.+.|.++|++..|.. ..++++++|+| +|||++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 356899999888853 35788999876 99999999999999999987665555544333
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.92 E-value=0.0007 Score=62.08 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
-+++|+|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998643
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.91 E-value=0.00022 Score=68.10 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=26.8
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
...++|+|++||||||+++.|.+.+ |...+|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4555655
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.90 E-value=0.00034 Score=65.27 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=30.5
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEe
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVP 462 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~ 462 (643)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3778877654
No 254
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.87 E-value=0.0033 Score=61.98 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHc---cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC----CCeEEEEccCchh
Q 006489 538 SGGQKQRVAIARALM---MNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTVLVIAHRLST 597 (643)
Q Consensus 538 SGGQrQRialARAl~---~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~----~~TvI~VtHrl~~ 597 (643)
+.|++.+-.+.|+++ ++++++|+--..+.++.. +..+.+.+.+.+. ++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344556667777774 888888765444455544 4444455555432 6799999997654
No 255
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=1.9e-05 Score=83.23 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHc-cCCCEEEEec---cc------CCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCe
Q 006489 536 RLSGGQKQRVAIARALM-MNPRILLLDE---AT------SALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADT 603 (643)
Q Consensus 536 ~LSGGQrQRialARAl~-~~p~IliLDE---~T------SaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~ 603 (643)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.+.++.+ +.|+++++|--..-+-+|.
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778888999999875 5999999999 65 58999999999999977655 8999999987555556777
Q ss_pred EEEEeCCEEEEEcChhHHhh
Q 006489 604 VAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 604 Iivl~~G~Ive~G~~~eL~~ 623 (643)
+.++++ +.+.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 766654 455667777654
No 256
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.00054 Score=64.00 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=21.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+++++|++|+|||||++.|.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.84 E-value=0.00086 Score=65.09 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccC-----------chhHhhcCeEEEEe
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 608 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHr-----------l~~i~~aD~Iivl~ 608 (643)
+++++++||+-- ++.+.-. +...+.+ .+.++|++-|+ ...+..||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6654222 2233444 38899999993 34467899999864
No 258
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.73 E-value=1 Score=49.88 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 129 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (643)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (643)
++..++..+..++......++..++..++-.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b60_A 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666543
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00073 Score=63.20 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPI 452 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~ 452 (643)
+|+|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.71 E-value=0.0027 Score=66.48 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.2
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998776543
No 261
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.68 E-value=0.0044 Score=64.67 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=29.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
.+|..+.|.||+|+||||+++.+.........-+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999988764434455544
No 262
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0019 Score=69.62 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.2
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 355444358899999999999999999987776543
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.66 E-value=0.0078 Score=64.23 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 458 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i 458 (643)
++..++++|++||||||++..|+..+....-.|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45789999999999999999999887654334433
No 264
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.64 E-value=0.00087 Score=63.86 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.00093 Score=62.03 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.|..+.|+|+|||||||+++.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 266
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.61 E-value=0.0077 Score=59.43 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..-+.|.||+|+||||+++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998864
No 267
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.60 E-value=0.00076 Score=70.94 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=45.0
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
+.+|+++|..+|+++++|||| |+++- ..+++....+.+++.++|..+....+|+++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 469999999999999999999 77653 33444444689999999998866667776443
No 268
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.58 E-value=0.0018 Score=60.56 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=27.7
Q ss_pred EEEEECCCCChHHHHHHHHHc-C----CCCCCC----EEEECCEe
Q 006489 427 KIALVGPSGGGKSTIANLIER-F----YDPIKG----KILLNGVP 462 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g-~----~~p~~G----~I~idg~~ 462 (643)
+|+|+|++|+|||||++.+.+ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 689999999999999976554 3 567766 66777743
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.00094 Score=62.48 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998644
No 270
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.55 E-value=0.0035 Score=63.81 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=25.6
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36789999999999999999999999753
No 271
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.53 E-value=0.81 Score=50.89 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 127 IVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162 (643)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 162 (643)
+.++..++..+..++......++..++..++-.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 117 (598)
T 3qf4_B 82 ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELF 117 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555553
No 272
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0028 Score=66.29 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999998764
No 273
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.49 E-value=0.001 Score=70.52 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=43.6
Q ss_pred cCCCEEEEecccCCCC---HHHHHHHHHHHHHHc-CCCeEEEEccCchhH-------------hhcCeEEEEeCC
Q 006489 553 MNPRILLLDEATSALD---AESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-------------QSADTVAVVSDG 610 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD---~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-------------~~aD~Iivl~~G 610 (643)
..|.++++||+=.-++ +.....+.+.++... .+..++++||+++-+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 556677777776654 377899999999755 457777777553
No 274
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.49 E-value=0.017 Score=58.54 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..+.|+||+|+||||+++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999888765
No 275
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0077 Score=62.85 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..-+.|+||+|+|||||++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 276
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.47 E-value=0.00068 Score=71.02 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=42.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 506 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i 506 (643)
+++|||++|+|||||+++|.+.. + ++.+++. .|+..|+... .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~------------------~Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPF------------------ATIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCG------------------GGGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCC------------------ceeccceeeE---ecChHHH
Confidence 58999999999999999999874 2 1222221 1677777654 3566788
Q ss_pred HHHHHHcCchH
Q 006489 507 ENAAKMANAHD 517 (643)
Q Consensus 507 ~~al~~a~l~~ 517 (643)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887765
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.46 E-value=0.00051 Score=71.00 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=33.4
Q ss_pred cceeceeEEeeCCCE--EEEECCCCChHHHHHHHHHcCC
Q 006489 413 MVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 413 ~vL~~isl~i~~G~~--vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.+++++++.+++|+. ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468889999999999 9999999999999999998854
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.44 E-value=0.0015 Score=66.16 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
+|..+.|+|+|||||||+++.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677766
No 279
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.44 E-value=1.6 Score=48.48 Aligned_cols=173 Identities=9% Similarity=-0.038 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 128 VIVGSVCTALRAWLFSSASERVVARLRKNLFS----HLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNL 203 (643)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~----~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~ 203 (643)
.++..+..++......++..++..++-.++.+ ..-+.+....-++-+.|+- .+... +...+...+..++..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~-~i~~~---~~~~~~~~~~~~~~~i 151 (595)
T 2yl4_A 76 AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTA-LLGRS---VTENLSDGLRAGAQAS 151 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHH
Confidence 33444444555555555656666655555543 2233444433332222322 22211 1122222333333333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHH-HHHH
Q 006489 204 STAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKN-EISR 282 (643)
Q Consensus 204 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~-~~~~ 282 (643)
..+++.+.+-+.......+++.+.+++...+.+...+..++..+...+..+ ...-..+.++-++.-..-..+.. +.+.
T Consensus 152 ~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 230 (595)
T 2yl4_A 152 VGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQ-LAEERIGNVRTVRAFGKEMTEIEKYASK 230 (595)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHhCccHHHHHHHHHH
Confidence 333333333333333322333333334444555555555555444444433 34444466777777766665543 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006489 283 YSEKVDETLKLGLQQAKVVGLFF 305 (643)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
.++..+...+.............
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~ 253 (595)
T 2yl4_A 231 VDHVMQLARKEAFARAGFFGATG 253 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.40 E-value=0.00045 Score=66.30 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC----CCcccHHHHhh--cCC-CC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV----LFNCSIEENIA--YGC-DG 499 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~----Lf~gTireNI~--~~~-~~ 499 (643)
.++|+|++||||||+++.|...+.+....+. ++. +|. ++..++|+.+. ++. +.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999998864333332 121 111 12445666552 110 00
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 500 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 500 ~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
+...+.+..++......+.+..++.+.++.|.++..
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 111122333333333356677776667888888654
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.40 E-value=0.0016 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.4
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
..++|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998664
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.37 E-value=0.0018 Score=60.65 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+|..+.|+|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987543
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0019 Score=61.22 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|..++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 284
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.37 E-value=0.002 Score=61.66 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=22.6
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHH
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
.++++.+ ...+|+||+||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 488999999999999999884
No 285
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.35 E-value=0.0049 Score=62.43 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+...+.+.||+|+|||+|+++++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567889999999999999999876
No 286
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.35 E-value=0.0027 Score=66.10 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=31.4
Q ss_pred CCEEEEECCCCChHHHHHHHHHc-----------CCCCCCCEEEECC
Q 006489 425 GSKIALVGPSGGGKSTIANLIER-----------FYDPIKGKILLNG 460 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g-----------~~~p~~G~I~idg 460 (643)
|.+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4467888888876
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.29 E-value=0.0021 Score=60.03 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 288
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.27 E-value=0.0018 Score=60.24 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred CCEEEEECCCCChHHHHHHHHHcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
.-+++++|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999876
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.27 E-value=0.014 Score=71.77 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.6
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
+++|+.|.|.|++|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999987765444433
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.22 E-value=0.0019 Score=60.59 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.18 E-value=0.0023 Score=58.71 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEECCCCChHHHHHHHH
Q 006489 426 SKIALVGPSGGGKSTIANLI 445 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL 445 (643)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.18 E-value=0.0017 Score=60.49 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++..+.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998554
No 293
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0025 Score=62.30 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.9
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-++|..++|+|++||||||+++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999864
No 294
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.17 E-value=0.0018 Score=65.88 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4677777777 799999999999999999999987
No 295
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.11 E-value=0.0027 Score=60.56 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++|..|+|+|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 296
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.01 Score=56.35 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=30.5
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
.++.++++||.- .++......+.+.+.+...+..+|++|++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 468899999974 46667667777777665445566777776643
No 297
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.09 E-value=0.019 Score=61.18 Aligned_cols=29 Identities=24% Similarity=0.090 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.-++...+.|+|++||||||+++.|...+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998654
No 298
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.07 E-value=0.0028 Score=60.96 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
++..|+|+|++||||||+++.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999872 5455554
No 299
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.06 E-value=0.0028 Score=59.58 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++..++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.03 E-value=0.0031 Score=60.23 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.4
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++|..|+|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998654
No 301
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.02 E-value=2.5 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 129 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (643)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (643)
++..++..+..++......++..++..++-.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b5x_A 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFN 106 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555566666666666666555543
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.02 E-value=0.0032 Score=59.98 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+|..|+|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999887653
No 303
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.028 Score=57.58 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..-+.|.||+|+|||||++.+....
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 304
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.93 E-value=0.022 Score=59.33 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..-+.|.||+|+|||||++.+....
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999999875
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.92 E-value=0.0033 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++|+|++||||||+++.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.89 E-value=0.003 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998654
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.89 E-value=0.0034 Score=62.21 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++|+|++|||||||++.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998764
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.88 E-value=0.0041 Score=57.52 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=20.4
Q ss_pred CEEEEECCCCChHHHHHHHHHc
Q 006489 426 SKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g 447 (643)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 309
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.88 E-value=0.011 Score=60.13 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.7
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHH
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
+++| .+-|.||+|||||||+--++
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHH
Confidence 7899 99999999999999955443
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.87 E-value=0.0033 Score=59.31 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.9
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.+++..|+|+|++||||||+++.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998765
No 311
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.82 E-value=0.011 Score=54.19 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
++.-+|+|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999874
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.0044 Score=58.06 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 313
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.77 E-value=0.014 Score=52.21 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+.+.-+.|.|++|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999987643
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0085 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 315
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.74 E-value=0.0045 Score=67.82 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=28.1
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
|+.+---+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 444433589999999999999999999877765443
No 316
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.74 E-value=0.018 Score=71.85 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=33.1
Q ss_pred Ccceecee--EEeeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 412 HMVLKGIT--LKLLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 412 ~~vL~~is--l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.+.|+++. .-+++|+.+.++|++|||||||+..+.-.-.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678876 5799999999999999999999999885543
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0056 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.69 E-value=0.0036 Score=57.80 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEECC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNG 460 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~---G~I~idg 460 (643)
..++|+|++|||||||+..|.+.+.+.. |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4789999999999999999998765432 4555444
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.68 E-value=0.0061 Score=57.76 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++..|+|+|++||||||+++.|...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998754
No 320
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.68 E-value=0.0044 Score=58.47 Aligned_cols=22 Identities=50% Similarity=0.676 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.68 E-value=0.0049 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.|.|+|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 322
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.57 E-value=0.057 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=21.7
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
..+.|.||+|+||||+++.+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.57 E-value=0.0061 Score=59.05 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++..+.|+|++||||||+++.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999998654
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.56 E-value=0.0063 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.52 E-value=0.053 Score=67.70 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEEECC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNG 460 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~I~idg 460 (643)
+++|+.+.|.||+|+|||||+.-++.......+ .++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 899999999999999999999888766543322 344444
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.52 E-value=0.0098 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.51 E-value=0.0061 Score=56.78 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999997654
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.50 E-value=0.0068 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+|+|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 329
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.012 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.49 E-value=0.0068 Score=58.10 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 331
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.46 E-value=0.0059 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.46 E-value=0.0058 Score=57.95 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+...|+|+|++||||||+++.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998655
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.45 E-value=0.0068 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
..++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.44 E-value=0.0062 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.44 E-value=0.0074 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 336
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.44 E-value=0.0077 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.44 E-value=0.0063 Score=58.70 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..+.|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 338
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.43 E-value=0.0077 Score=54.73 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998653
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.42 E-value=0.0082 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999997643
No 340
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.40 E-value=0.0077 Score=56.93 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
..++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 341
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.39 E-value=0.013 Score=56.46 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=26.2
Q ss_pred HccCCCEEEEecccCC-CCHH-HHHHHHHHHHHHcCCCeEEEEcc
Q 006489 551 LMMNPRILLLDEATSA-LDAE-SEYLVQDAMDSLMKGRTVLVIAH 593 (643)
Q Consensus 551 l~~~p~IliLDE~TSa-LD~~-te~~i~~~i~~~~~~~TvI~VtH 593 (643)
+.++|+++|+||+-.. .+.. ++..+++....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 4468999999997642 3322 44444444333445667777777
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.39 E-value=0.0084 Score=54.79 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998744
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0076 Score=56.29 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+.-+++|+|++|||||||++.|.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33489999999999999999999864
No 344
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.39 E-value=0.015 Score=53.79 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
++.=+|+++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999864
No 345
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.39 E-value=0.011 Score=55.19 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.|.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.39 E-value=0.0079 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 347
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.38 E-value=0.0074 Score=59.83 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 348
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.37 E-value=0.0079 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 349
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.36 E-value=0.0073 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 350
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.36 E-value=0.064 Score=54.68 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
+++++++||+-.--..+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999984332155666677777766566788888888764
No 351
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.35 E-value=0.0081 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.34 E-value=0.011 Score=55.33 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999986
No 353
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.32 E-value=0.0084 Score=54.45 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 354
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.32 E-value=0.0045 Score=62.62 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++-.|+|.|+|||||||+++.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.31 E-value=0.0083 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..++|.|++||||||+++.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.30 E-value=0.0082 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++|.|++||||||+++.|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998755
No 357
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.30 E-value=0.045 Score=55.73 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+...+.|+|++|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998754
No 358
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.30 E-value=0.0076 Score=60.19 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.0086 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.29 E-value=0.0078 Score=54.59 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.29 E-value=0.0087 Score=55.98 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 362
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.0035 Score=65.76 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+..+.|.||+|+|||||++.+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999765
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.27 E-value=0.0089 Score=54.75 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.27 E-value=0.007 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.0
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 365
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.26 E-value=0.0072 Score=60.51 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|||++|+|||||++.|++.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.26 E-value=0.009 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998643
No 367
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.033 Score=59.39 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.0
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
-+++-.-+.+.||+|+|||+|++++++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356677899999999999999999998753
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.23 E-value=0.0085 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 369
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.21 E-value=0.0087 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.19 E-value=0.0095 Score=59.13 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..|.|+|++||||||+++.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998753
No 371
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.19 E-value=0.01 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+|+|+|++|+|||||++.+.+.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 372
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.19 E-value=0.0085 Score=56.01 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCEEEEECCCCChHHHHHHHHHcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
--+++|+|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 373
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.18 E-value=0.017 Score=54.56 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.17 E-value=0.011 Score=60.74 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+++..+.|+||+|||||||...|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.17 E-value=0.01 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 376
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.15 E-value=0.014 Score=55.13 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.9
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
..+....+.+ .|..+.|+||||||||||+..|....
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566655554 68899999999999999999998653
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.14 E-value=0.01 Score=58.63 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997744
No 378
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.14 E-value=0.003 Score=65.95 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=30.2
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
++.++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 56899999964 46777777777777654445567777776653
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.10 E-value=0.011 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 380
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.10 E-value=0.0094 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+++|+|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.08 E-value=0.036 Score=63.82 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.+.++||+|+|||+++++|...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.07 E-value=0.011 Score=53.33 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.07 E-value=0.011 Score=56.91 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|..+.|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998755
No 384
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.07 E-value=0.045 Score=59.50 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.5
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++..-+.|.||+|+|||++++++....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4566779999999999999999998764
No 385
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.06 E-value=0.012 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 386
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.06 E-value=0.058 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..-+.|.||+|+|||||++++....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.05 E-value=0.011 Score=54.87 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.05 E-value=0.016 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 389
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.04 E-value=0.011 Score=59.09 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|+++|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999964
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.01 E-value=0.012 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCEEEEECCCCChHHHHHHHHHc
Q 006489 425 GSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g 447 (643)
.-+|+++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999975
No 391
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.01 E-value=0.01 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 392
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.00 E-value=0.011 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 393
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.012 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 394
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.98 E-value=0.019 Score=52.82 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+|+|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 395
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.97 E-value=0.011 Score=54.09 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 396
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.94 E-value=0.012 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.94 E-value=0.011 Score=59.58 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCEEEEECCCCChHHHHHHHHHc
Q 006489 425 GSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g 447 (643)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.91 E-value=0.013 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.013 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 400
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.85 E-value=0.071 Score=65.76 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.3
Q ss_pred cceeceeEE---eeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 413 MVLKGITLK---LLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 413 ~vL~~isl~---i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++....
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345554 33 88999999999999999999887765543
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.85 E-value=0.014 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+|+|++|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999864
No 402
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.81 E-value=0.018 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCEEEEECCCCChHHHHHHHHHcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
.-+|+|+|++|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999873
No 403
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.79 E-value=0.014 Score=59.54 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|||+|++|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999853
No 404
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.76 E-value=0.015 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 405
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.76 E-value=0.015 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 406
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.75 E-value=0.014 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 407
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.71 E-value=0.016 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 408
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.71 E-value=0.014 Score=57.66 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=21.5
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|+|+|++|+|||||++.|++..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999753
No 409
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.68 E-value=0.0091 Score=57.23 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.-+|+|+|++|+|||||++.|++..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999863
No 410
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.015 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 411
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.68 E-value=0.016 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.67 E-value=0.017 Score=58.54 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+..++|+||||||||||+..|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 413
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.66 E-value=0.016 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.65 E-value=0.014 Score=60.00 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
..++|+||||||||||++.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 415
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.008 Score=64.42 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.7
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
..+-+|++++|+|+||+|||||++.|.+......|.|.
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 56779999999999999999999999876544344443
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.62 E-value=0.017 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 417
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.62 E-value=0.023 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+|+|++|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999875
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.61 E-value=0.017 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 419
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.61 E-value=0.015 Score=54.80 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+.=+|+|+|++|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 33479999999999999999998753
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.60 E-value=0.015 Score=56.36 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.+|.+|+|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999987664
No 421
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.016 Score=54.28 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.4
Q ss_pred CEEEEECCCCChHHHHHHHHHc
Q 006489 426 SKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g 447 (643)
-+|+|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999987
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.59 E-value=0.02 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.679 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++..+.|+|++||||||+++.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.59 E-value=0.02 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+-=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.59 E-value=0.016 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 425
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.58 E-value=0.022 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 426
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.58 E-value=0.011 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHHc
Q 006489 424 SGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
+.-+|+|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999874
No 427
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.58 E-value=0.017 Score=53.17 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 428
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.57 E-value=0.016 Score=54.23 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.56 E-value=0.024 Score=52.15 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=26.7
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
..++...+. -.|.-+.|.|+||+|||||+..|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345554444 4689999999999999999998875
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.0084 Score=56.96 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=24.1
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
...|+.|.-.+--+|+++|++|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34444444333458999999999999999999874
No 431
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.55 E-value=0.11 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.++.-+.|.||+|+|||+|+++++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 432
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.55 E-value=0.017 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.0
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 433
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.54 E-value=0.02 Score=60.01 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.0
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHH
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
++..+++.+ ...+|+|+||||||||+.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 566666666 588999999999999999985
No 434
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.54 E-value=0.015 Score=55.73 Aligned_cols=25 Identities=44% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998765
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.53 E-value=0.018 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.7
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998864
No 436
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.016 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.52 E-value=0.018 Score=55.54 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++.|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.52 E-value=0.018 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 439
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.50 E-value=0.018 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.6
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
-+|+++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47999999999999999999886543
No 440
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.48 E-value=0.017 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.48 E-value=0.019 Score=55.32 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 37999999999999999999999887764
No 442
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.48 E-value=0.019 Score=57.03 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=23.2
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
.++++||.+|+|||||++.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.43 E-value=0.02 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.7
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
=+|+|+|++|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 444
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.43 E-value=0.02 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
.+|..|++.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999876653
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.41 E-value=0.019 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.019 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHc
Q 006489 424 SGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
+.-+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
No 447
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.40 E-value=0.018 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.|+|||++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 448
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.40 E-value=0.02 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
++-=+|+|+|++|+|||||++.+.+-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999999864
No 449
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.40 E-value=0.02 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|.+|+|||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 450
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.40 E-value=0.02 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.02 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 452
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.02 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+|+|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.37 E-value=0.02 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCEEEEECCCCChHHHHHHHHHcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
.=+|+|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
No 454
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.37 E-value=0.017 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.35 E-value=0.019 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|.+|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.32 E-value=0.022 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987764
No 457
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.31 E-value=0.022 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888753
No 458
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.30 E-value=0.018 Score=58.03 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.9
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|+|||++|+|||||++.|.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999864
No 459
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.30 E-value=0.016 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
=+|+|+|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.29 E-value=0.02 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+++|++|+|||||++.|++.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.29 E-value=0.022 Score=55.02 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
++|..|++.|.+||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999987654
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.26 E-value=0.017 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
-+|+++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 463
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.26 E-value=0.024 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+|.+|.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987764
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.26 E-value=0.024 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+|+|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 465
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 006489 427 KIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g 447 (643)
+|+|+|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 466
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.22 E-value=0.024 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+.-+|+|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447999999999999999999864
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.19 E-value=0.021 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.4
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
..+.|+||+|||||||.+.|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
No 468
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.022 Score=54.55 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.5
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-.++|+|++|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.14 E-value=0.024 Score=53.87 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|+|+|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 470
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.14 E-value=0.016 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=9.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 471
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.13 E-value=0.022 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.12 E-value=0.015 Score=57.60 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.7
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
.+++..|+|.|..||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999988763
No 473
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.09 E-value=0.0026 Score=73.69 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=37.7
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 464 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 464 (643)
.++.+++++.+.++||+|+|||||+++|++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 467788999999999999999999999999874 456777776654
No 474
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.08 E-value=0.028 Score=51.76 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+.+..+.|+|++|+|||||++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457799999999999999999988753
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.07 E-value=0.024 Score=55.37 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998763
No 476
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.03 E-value=0.026 Score=57.00 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=24.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id 459 (643)
..+.|+|++||||||+++.|...+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998732 2444543
No 477
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.028 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+|+|||++|+|||||++.+.+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999998743
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.00 E-value=0.025 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
...+.|+||||||||||+..|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.99 E-value=0.023 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHc
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
++.-+|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999975
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.92 E-value=0.093 Score=56.60 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=57.7
Q ss_pred ccccCCCCCCCHHHHHHHHHHH--HHcc---------------CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 006489 528 TFVGERGVRLSGGQKQRVAIAR--ALMM---------------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 590 (643)
Q Consensus 528 T~vge~G~~LSGGQrQRialAR--Al~~---------------~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ 590 (643)
+........+||||+|-.-+|. |+++ .-.+++|||| |-+|++.-+...+-++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 5566667788999999543333 2221 1257999999 999999888888888876 788888
Q ss_pred EccCchhHhhcCeEEEEe
Q 006489 591 IAHRLSTVQSADTVAVVS 608 (643)
Q Consensus 591 VtHrl~~i~~aD~Iivl~ 608 (643)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8877 5567889998874
No 481
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.89 E-value=0.26 Score=52.47 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+...++++|++|+||||++.-|+..+.-
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999876653
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.88 E-value=0.027 Score=57.30 Aligned_cols=26 Identities=46% Similarity=0.714 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++-+|+++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999988764
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.027 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 484
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.066 Score=54.22 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
++.++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 47899999964 34555556666777665455667777777643
No 485
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.75 E-value=0.019 Score=55.32 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.9
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+.++...+.|.||.||||+|.++.|...|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998766
No 486
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.73 E-value=0.15 Score=49.19 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=39.8
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccC-----------chhHhhcCeEEEEe
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 608 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHr-----------l~~i~~aD~Iivl~ 608 (643)
.+.|++++||+-=..| ...+.+.+.+ .+++||+-.++ ...+..||.|..|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999999865 4444455555 58899998888 45678899999885
No 487
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.67 E-value=0.015 Score=55.42 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 488
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.64 E-value=0.037 Score=55.61 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
+-++++||.+|+|||||+|.|.|......|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999987643333
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.63 E-value=0.031 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHc
Q 006489 424 SGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
+.=+|+++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999988874
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.63 E-value=0.031 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.2
Q ss_pred CEEEEECCCCChHHHHHHHHHcCC
Q 006489 426 SKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
-+++|+|.+|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.62 E-value=0.032 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999764
No 492
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.61 E-value=0.54 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
...|+|||++||||||++..|+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999996553
No 493
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.55 E-value=0.022 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHHc
Q 006489 424 SGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
+.=+|+++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999954
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.48 E-value=0.037 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCEEEEECCCCChHHHHHHHHHcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
.=+|+|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.038 Score=53.02 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 006489 427 KIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~ 448 (643)
+|+|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 496
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.36 E-value=0.15 Score=52.42 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
-+.+.||.|+||||+++.+...+.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 488999999999999999987654
No 497
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.34 E-value=0.036 Score=50.98 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+.+..+.|+|++|+|||||++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999887643
No 498
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.32 E-value=0.019 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=5.0
Q ss_pred CEEEEECCCCChHHHHHHHHHcC
Q 006489 426 SKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
=+|+|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998764
No 499
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.29 E-value=0.054 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.5
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHH
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
+++|+.+.|.|++|+||||++.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986543
No 500
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.27 E-value=0.039 Score=57.71 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
++..+++||.+|+|||||+|.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999987
Done!