BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006490
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 69 ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 69 ERFRTITSSYYRGAHG--IIVVYDVTDQESYANVKQWLQEIDRYASEN---VNKLLVGNK 123
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGI-PFLETSAKN 155
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K I
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
+E + I + + A+ I VYD +DE ++ K+ V D LL+
Sbjct: 62 QERFRTITTAYYRGAMG----IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLV 114
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
+K D++ + + +ELGI P I S K+ D +N +F
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ 467
R S ++ ++ + LL G GKS LL F+E F+ ++ T G + + VD
Sbjct: 5 RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 64
Query: 468 PGGNKKTLILQEIPEEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525
G K + +E + I + + A+ I VYD +DE ++ K+ V
Sbjct: 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNE 120
Query: 526 LGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
D LL+ +K D++ + + +ELGI P I S K+ D +N +F
Sbjct: 121 HANDEA---QLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ +S W+PEL+ VPI++ G KLDLR D A
Sbjct: 78 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
+ V G +++ +ECS+ + V VF A + VL P
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+C+ G GK+ LL S+ F +Y PT + ++ NVV G + +E
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GATVNLGLWDTAGQED 68
Query: 485 VKKI--LSNKEALASCDVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIAS 541
++ LS + A DV I + + S++ +K+ + E+ GVP +L+ +
Sbjct: 69 YNRLRPLSYRGA----DVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGT 120
Query: 542 KDDLK 546
K DL+
Sbjct: 121 KLDLR 125
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K +
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 482 EEGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
+E + I + + A+ I VYD +DE ++ K+ V D LL+
Sbjct: 66 QERFRTITTAYYRGAMG----IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLV 118
Query: 540 ASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
+K D++ + + +ELGI P I S K+ D +N +F
Sbjct: 119 GNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 160
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----NATSLE 137
AD VL ++ +++ + W+PELRR VPI++ G KLDLR D + +
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140
Query: 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
G +++ +ECS+ T V VF A K VL P
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIP- 481
+C+ G GK+ +L + F +Y PT + ++ NV VD G L L +
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD---GQIVNLGLWDTAG 66
Query: 482 EEGVKKI--LSNKEALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLL 538
+E ++ LS + A D+ + + + S++ K+ + E+ R + VP +L
Sbjct: 67 QEDYSRLRPLSYRGA----DIFVLAFSLISKASYENVLKKWMPELRRFAPN----VPIVL 118
Query: 539 IASKDDLKPYTMAVQDSARVT---------QELGIEPPIPVSMKS-KDLNNVFSRIIWAA 588
+ +K DL+ + D V +++G I S K+ +++ VF I
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
Query: 589 EHPHLNIPETETGRNRKRYRH 609
P E R RK +R
Sbjct: 179 LQPP---RRKEVPRRRKNHRR 196
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ ++ W+PELR VPII+ G KLDLR D A
Sbjct: 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
+ G +++ +ECS+ T V VF A K VL P
Sbjct: 136 VPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
+C+ G GK+ +L S+ F +Y PT + ++ NVV GN L L + +E
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD--GNTVNLGLWDTAGQE 65
Query: 484 GVKKI--LSNKEALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIA 540
++ LS + A DV I + + S++ K+ + E+ GVP +L+
Sbjct: 66 DYNRLRPLSYRGA----DVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVG 117
Query: 541 SKDDL---KPYTMAVQDSARVTQELG------IEPPIPVSMKSKDLNNV 580
+K DL K + + + +T G I PI + SK NV
Sbjct: 118 TKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNV 166
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 66 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 66 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 120
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 152
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 85 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 139
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K I
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
+E + I + A I VYD +DE ++ K+ V D LL+ +
Sbjct: 62 QERFRTITTAYYRGAXG--IILVYDITDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
K D + + + +ELGI P I S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 76 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K +
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
+E + I + A I VYD +DE ++ K+ V D LL+ +
Sbjct: 62 QERFRTITTAYYRGAXG--IILVYDVTDERTFTNIKQWFKTVNEHANDEA---QLLLVGN 116
Query: 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKD-LNNVF 581
K D + + + +ELGI P I S K+ D +N +F
Sbjct: 117 KSDXETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIF 156
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ K
Sbjct: 68 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGIK 122
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 154
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GK+ LL F + ++E+Y T G + + ++ G K I +
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 76 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 130
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K
Sbjct: 93 ERFRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNK 147
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
DL + +A+ LGI P + S K+
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 179
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ + WLPEL+ +PI++ G KLDLR D A
Sbjct: 76 RGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
S+ G +++ +ECS+ T V VF A + L P
Sbjct: 136 ASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 15/147 (10%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+C+ G GK+ +L S+ F +Y PT + ++ NVV G + +E
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 485 VKKI--LSNKEALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIAS 541
++ LS + A DV + + + S++ K+ L E+ G+P +L+ +
Sbjct: 67 YNRLRPLSYRGA----DVFLLAFSLISKASYENIHKKWLPELKHYAP----GIPIVLVGT 118
Query: 542 KDDLKPYTMAVQD---SARVTQELGIE 565
K DL+ ++D +A +T G E
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEE 145
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ LL G GKS LL F + ++E+Y T G + + ++ G K I +E
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
+ I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K D
Sbjct: 61 FRTITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCD 115
Query: 545 LKPYTMAVQDSAR-VTQELGIEPPIPVSMKS 574
L + +A+ LGI P + S K+
Sbjct: 116 LTTKKVVDYTTAKEFADSLGI-PFLETSAKN 145
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
LL G GKS LL F + ++E+Y T G + + ++ G K I +E +
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545
I S+ A I VYD +D+ S+ K+ L E+ R ++ V LL+ +K DL
Sbjct: 62 TITSSYYRGAHG--IIVVYDVTDQESFNNVKQWLQEIDRYASEN---VNKLLVGNKCDL 115
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 49 RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
RL P YP V T + ++GK + AD ++ ++ ++ + + W PE
Sbjct: 68 RLRPLSYPQTVGETY---GKDITSRGK---DKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSAT 159
+R PII+ G KLDLR D + E+ + PI + +EI +ECSA
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 TMIQVPDVFYYAQKAVLHP 178
T + VF A +AVL P
Sbjct: 182 TQRGLKTVFDEAIRAVLCP 200
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 80 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI++ +ECSA T + VF A +AVL P
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 51
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI++ +ECSA T + VF A +AVL P
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
D +++ ++ + +L + W PE++ VPII+ G K DLR D H A L ++
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
G M +ECSA T V +VF A +A L
Sbjct: 138 PVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
+ +C++ G GK+ LL S+ F E Y PT + YAV+V GG + L L +
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT--VGGKQYLLGLYDTAG 75
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
+E ++ + DV + + + S++ KE V + + VP LLI +
Sbjct: 76 QEDYDRLRPLSYPMT--DVFLICFSVVNPASFQNVKEEWVPELK---EYAPNVPFLLIGT 130
Query: 542 KDDLK--PYTMA-----------VQDSARVTQELGIEPPIPVS-MKSKDLNNVFSRIIWA 587
+ DL+ P T+A V+ ++ +E+G + S + K L VF I A
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190
Query: 588 AEHP 591
P
Sbjct: 191 ILTP 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT-------IIDTSSSLENKGKLN 77
K+ L+ + A ++ PE+ + PT D Y V V + DT+ E+ +L
Sbjct: 31 KTCLLMSYANDAFPEE----YVPTVF--DHYAVSVTVGGKQYLLGLYDTAGQ-EDYDRLR 83
Query: 78 E-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136
D ++ ++ ++ + W+PEL+ VP ++ G ++DLR D +
Sbjct: 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR 143
Query: 137 EEVM--GPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
M PI + +EI C VECSA T + VF A A+L P
Sbjct: 144 LNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 82 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 141
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 142 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ ++ G GK+ LL F + F E Y PT E Y ++
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 48
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ ++ G GK+ LL F + F E Y PT E Y ++
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 47
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG 470
+ ++ K Q + + ++ G GKSAL F+ F E+Y PT + Y VV G
Sbjct: 2 AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGE 60
Query: 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS 530
+ IL +E I N S + + V+ ++ S+ T + ++ R+ ED
Sbjct: 61 EVQIDILDTAGQEDYAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118
Query: 531 GYGVPCLLIASKDDLK 546
VP LL+ +K DL+
Sbjct: 119 --NVPFLLVGNKSDLE 132
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVL 176
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G GKSAL F+ F E+Y PT + Y VV G + IL +E
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
I N S + + V+ ++ S+ T + ++ R+ ED VP LL+ +K D
Sbjct: 65 YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 120
Query: 545 LK 546
L+
Sbjct: 121 LE 122
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ ++ G GK+ LL F + F E Y PT E Y ++
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 46
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ ++ G GK+ LL F + F E Y PT E Y ++
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 47
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ ++ G GK+ LL F + F E Y PT E Y ++
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI 48
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 81 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI++ +ECSA T + VF A +AVL
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 76 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G GKSAL F+ F E+Y PT + Y VV G + IL +E
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
I N S + + V+ ++ S+ T + ++ R+ ED VP LL+ +K D
Sbjct: 79 YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 134
Query: 545 LK 546
L+
Sbjct: 135 LE 136
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G GKSAL F+ F E+Y PT + Y VV G + IL +E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
I N S + + V+ ++ S+ T + ++ R+ ED VP LL+ +K D
Sbjct: 67 YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 122
Query: 545 LK 546
L+
Sbjct: 123 LE 124
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 34/137 (24%)
Query: 49 RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
RL P FYPD A ++L + ++ + + W PE
Sbjct: 97 RLRPLFYPD-------------------------ASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS------LEEVM---GPIMQQFREIETCVECSAT 159
+ KVPIIV GCK DLR D + + LE V G M + +ECSA
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 160 TMIQVPDVFYYAQKAVL 176
V VF A + L
Sbjct: 192 LHDNVHAVFQEAAEVAL 208
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ +L G GK++LL F + F E+Y PT E+Y VN+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 78 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 138 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 49
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 100
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ +C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 41 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
+ ++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
++ +V++ LL G GKSAL F + P +E T V+ G + +L
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
++ +I E+ + L +A D + VY +D+ S+++ EL V++ AR +D
Sbjct: 57 MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTL 475
++ +V++ LL G GKSAL F + P +E T V+ G + +L
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASL 56
Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYG 533
++ +I E+ + L +A D + VY +D+ S+++ EL V++ AR +D
Sbjct: 57 MVYDIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---- 111
Query: 534 VPCLLIASKDDL 545
VP +L+ +K DL
Sbjct: 112 VPIILVGNKSDL 123
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 19 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 76
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 77 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 137 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 48
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 20 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 11 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 47
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E F ++ T G ++ VV+ G KT+ LQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG---KTVKLQIWDT 81
Query: 483 EGVKKILS-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ S + + VYD + ++ L + L + + +L +
Sbjct: 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN---IVVILCGN 138
Query: 542 KDDLKP-YTMAVQDSARVTQE 561
K DL P + +++R QE
Sbjct: 139 KKDLDPEREVTFLEASRFAQE 159
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
D +++ ++ + +L + W+PE++ VPII+ K DLR D H T L +
Sbjct: 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
G M + +ECSA T V +VF A +A L
Sbjct: 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-EE 483
+ ++ G GK+ LL F + F E Y PT E Y ++ + G + L L + +E
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI--EVDGKQVELALWDTAGQE 84
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCLLIASK 542
++ + F DS D S + E V EV + VP +L+A+K
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSVDSPD--SLENIPEKWVPEVKHFCPN----VPIILVANK 138
Query: 543 DDLKPYTMAVQDSARVTQE 561
DL+ + AR+ QE
Sbjct: 139 KDLRSDEHVRTELARMKQE 157
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFL---ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
+V++ LL G GKSAL F + P +E T V+ G + +L++
Sbjct: 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 54
Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPC 536
+I E+ + L +A D + VY +D+ S+++ EL V++ AR +D VP
Sbjct: 55 DIWEQDGGRWLPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD----VPI 109
Query: 537 LLIASKDDL 545
+L+ +K DL
Sbjct: 110 ILVGNKSDL 118
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 36 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 96 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 199
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 27 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 63
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ +C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 75 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 81 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 141 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 75 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ +C++ G GK+ LL S+ Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM 72
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
+ ++ G +GK++L F + F + Y T G + + + PG TL + +I +
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
+ + +K + V + VYD ++ S++ ++ V ++ E+S L+ +K
Sbjct: 67 TIGGKMLDKYIYGAQGV-LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 544 DLKPY-TMAVQDSARVTQELGIEPPIPVSMKSKD 576
DL+ T+ + R QE G VS K+ D
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHF-VSAKTGD 158
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 84 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 143
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 144 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ +C++ G GK+ LL S+ FS Y PT + Y+ NV+
Sbjct: 10 QGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM 55
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 93 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 152
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 153 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
Q +C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 17 QGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 64
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 134 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-M 140
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQ 136
Query: 141 GPIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 137 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G GKSAL F+ F E+Y PT + Y VV G + IL E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
I N S + + V+ ++ S+ T + ++ R+ ED VP LL+ +K D
Sbjct: 67 YAAIRDN--YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSD 122
Query: 545 LK 546
L+
Sbjct: 123 LE 124
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 7/170 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G N GK+ L F F + T G + VD G K + +
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR--LGEDSGYGVPCLLIA 540
E +K + + + +FVYD ++ S+ + E + L D +P +L+
Sbjct: 89 ERFRKSMV-QHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND----IPRILVG 143
Query: 541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEH 590
+K DL+ D A+ + P S K+ + N+ I H
Sbjct: 144 NKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAH 193
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
Q+ + + ++ G GKSAL F+ F E+Y PT + Y VV G + IL
Sbjct: 2 QSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDIL 60
Query: 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 537
E I N S + + V+ ++ S+ T E ++ R+ + +P L
Sbjct: 61 DTAGLEDYAAIRDN--YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED-KIPLL 117
Query: 538 LIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581
++ +K DL+ V+++ +E G++ + S K++ +++ VF
Sbjct: 118 VVGNKSDLEERRQVPVEEARSKAEEWGVQ-YVETSAKTRANVDKVF 162
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G GKSAL F+ F E+Y PT + Y VV G + IL E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544
I N S + + V+ ++ S+ T E ++ R+ + +P L++ +K D
Sbjct: 64 YAAIRDN--YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED-KIPLLVVGNKSD 120
Query: 545 LKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581
L+ V+++ +E G++ + S K++ +++ VF
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQ-YVETSAKTRANVDKVF 158
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVM 140
++ V++ ++ + +L + W+ E+ VPII+ GCK+DLR D +E
Sbjct: 82 SNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQ 141
Query: 141 GPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVL 176
P+ Q + ECSA T V +VF A +A L
Sbjct: 142 QPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAV 175
+ PI + +EI +ECSA T + VF A +AV
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
+D V+L +A N +++ +S+ W PE++ ++ G K+DLR D + ++
Sbjct: 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 154
Query: 143 IMQQFREIETCVECSATTMIQVPDVF 168
+ Q+ + +E S+ I + +VF
Sbjct: 155 LCQKLGCVAY-IEASSVAKIGLNEVF 179
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 7/170 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G N GK+ L F F + T G + VD G K + +
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR--LGEDSGYGVPCLLIA 540
E +K + + + +FVYD ++ S+ + E + L D +P +L+
Sbjct: 80 ERFRKSMV-QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND----IPRILVG 134
Query: 541 SKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEH 590
+K DL+ D A+ + P S K+ + N+ I H
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
+D V+L +A N +++ +S+ W PE++ ++ G K+DLR D + ++
Sbjct: 94 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 153
Query: 143 IMQQFREIETCVECSATTMIQVPDVF 168
+ Q+ + +E S+ I + +VF
Sbjct: 154 LCQKLGCVAY-IEASSVAKIGLNEVF 178
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G + GK++ L + + F+ + T G + V V + K I +
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I + A + +YD +++ S+ ++ ++ D+ +L+ +K
Sbjct: 82 ERYRTITTAYYRGAMG--FLLMYDIANQESFAAVQDWATQIKTYSWDNA---QVILVGNK 136
Query: 543 DDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRII 585
DL+ + +D R+ +LG E + ++ ++ VF R++
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K I +
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + + + + VYD + ++ L + L + + +L +K
Sbjct: 70 ERFRSV--TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 124
Query: 543 DDLKP-YTMAVQDSARVTQE 561
DL + +++R QE
Sbjct: 125 KDLDADREVTFLEASRFAQE 144
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 117
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE Q E+ +E SA T V + F + +L+
Sbjct: 118 IILCGNKKDLDADREVTFLE---ASRFAQENEL-MFLETSALTGENVEEAFVQCARKILN 173
Query: 178 P 178
Sbjct: 174 K 174
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K I +
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + + + A+ + VYD + ++ L + L + + +L +K
Sbjct: 71 ERFRSVTRSYYRGAAG--ALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 125
Query: 543 DDLKP-YTMAVQDSARVTQE 561
DL + +++R QE
Sbjct: 126 KDLDADREVTFLEASRFAQE 145
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 60 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 118
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE + +ET SA T V + F + +L+
Sbjct: 119 IILCGNKKDLDADREVTFLEASRFAQENELMFLET----SALTGEDVEEAFVQCARKILN 174
Query: 178 P 178
Sbjct: 175 K 175
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ +L G + GK+ ++ F FSE T G + + ++ G K I +
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + I + S + I YD + S+ + +V + +G + LLI +K
Sbjct: 89 ERFRTI--TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY---AGSNIVQLLIGNK 143
Query: 543 DDLKPY-TMAVQDSARVTQELGIEPPIPVSMK-SKDLNNVFSRI 584
DL +++ ++ + + I I S K S ++ F R+
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+R +L G Q GKS L N F S ++ GE + G T+IL ++ E
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTL-MVDGESATIILLDMWE 65
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPCLLIA 540
+ + + D + VY +D S+++ EL +++ AR ED +P +L+
Sbjct: 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED----IPIILVG 121
Query: 541 SKDDL 545
+K DL
Sbjct: 122 NKSDL 126
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 81 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 138
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 139 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 189
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 62
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
N +R +FG GKS+L+ F++ F E+Y PT + Y + +K LQ
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI----SCDKSICTLQITD 57
Query: 482 EEGVKKI-LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
G + + +++ I VY + S + K + ++ + D +P +L+
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVG 116
Query: 541 SKDDLKPYTMAVQDS 555
+K D P + VQ S
Sbjct: 117 NKCDESP-SREVQSS 130
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSF--LERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEI 480
+R +L G Q GKS L N F + + + Y + VD G T+IL ++
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD---GESATIILLDM 94
Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPCLL 538
E + + + D + VY +D S+++ EL +++ AR ED +P +L
Sbjct: 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED----IPIIL 150
Query: 539 IASKDDL 545
+ +K DL
Sbjct: 151 VGNKSDL 157
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 77 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 134
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 135 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 185
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 58
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSF--LERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEI 480
+R +L G Q GKS L N F + + + Y + VD G T+IL ++
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVD---GESATIILLDM 63
Query: 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV--ARLGEDSGYGVPCLL 538
E + + + D + VY +D S+++ EL +++ AR ED +P +L
Sbjct: 64 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED----IPIIL 119
Query: 539 IASKDDL 545
+ +K DL
Sbjct: 120 VGNKSDL 126
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G GKS LL+ F E+ F + T G ++ +++ G K I +
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
E + + + + VYD + ++ L + L + +LI +K
Sbjct: 75 ERFRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNK 129
Query: 543 DDLKP 547
DL+
Sbjct: 130 ADLEA 134
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KV 116
++ + I DT+ + + A ++ Y ++ST + LSS WL + R L
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNT 121
Query: 117 PIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
II+ G K DL + T E +QF E +E SA T V D F A K
Sbjct: 122 VIILIGNKADLEAQRDVTYEE------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175
Query: 175 V 175
+
Sbjct: 176 I 176
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 84 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 141
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 142 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 192
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 65
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXI--GGEPYTLGL 55
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 76 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 135
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 136 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 184
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 57
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 81 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 138
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 139 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 189
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 62
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L++
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGLRD 57
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 417 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNV-VDQPGGNKKT 474
Q + +F+ +L G GKS L +F + P E Y + VD+ + T
Sbjct: 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK---EEVT 73
Query: 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV 534
L++ +I E+G L + D + V+ +D S+ + E L+ + R G + +
Sbjct: 74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPH-HDL 131
Query: 535 PCLLIASKDDL 545
P +L+ +K DL
Sbjct: 132 PVILVGNKSDL 142
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 77 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 137 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 185
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 58
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 75 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 134
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 135 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 183
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 56
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 78 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 138 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 186
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 59
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 422 NVFRCLLFGPQNAGKSALLNSF--LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
VF+ +L G GKS L +F L+ + + +VD+ + TLI+ +
Sbjct: 1 GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE---EVTLIVYD 57
Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
I E+G L + D + V+ +D S+ + E L+ + R G + +P +L+
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPH-HDLPVILV 115
Query: 540 ASKDDL 545
+K DL
Sbjct: 116 GNKSDL 121
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
++N+ + ++ G GK++L++ ++ +S+ Y T G + V G K +Q
Sbjct: 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG--DKVATMQV 62
Query: 480 IPEEGVKKILSNKEAL-ASCDVTIFVYDSSDEYSWKRTK 517
G ++ S A D + VYD ++ S++ K
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK 101
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++F+ +L G GKS+L+N ++ F T G ++ ++ G I
Sbjct: 10 SLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 69
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEY----SWKRTKELLVEVARLGEDSGYGVPCL 537
+E + + + + C + F D S + +WK+ + A + E + P +
Sbjct: 70 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKE---FIYYADVKEPESF--PFV 124
Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
++ +K D+K ++ +++ ++ G P S +KD NV
Sbjct: 125 ILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETS--AKDSTNV 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G + GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ + ++ R+ + VP +L+ +K
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTR 149
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G GKS LL+ F E+ F + T G ++ +++ G K L + +
Sbjct: 30 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAG 88
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
+G + ++ + + VYD + ++ L + L + +LI +K
Sbjct: 89 QGRFRAVTRSYYRGAAGA-LMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNK 144
Query: 543 DDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEHPHLNI 595
DL+ + +++ + +E G+ + + +K NV + AA+ + NI
Sbjct: 145 ADLEAQRDVTYEEAKQFAEENGL---LFLEASAKTGENVEDAFLEAAKKIYQNI 195
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KV 116
++ + I DT+ + + A ++ Y ++ST + LSS WL + R L
Sbjct: 78 KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNT 136
Query: 117 PIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
II+ G K DL + T E +QF E +E SA T V D F A K
Sbjct: 137 VIILIGNKADLEAQRDVTYEEA------KQFAEENGLLFLEASAKTGENVEDAFLEAAKK 190
Query: 175 V 175
+
Sbjct: 191 I 191
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 422 NVFRCLLFGPQNAGKSALLNSF--LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
VF+ +L G GKS L +F L+ + + +VD+ + TLI+ +
Sbjct: 11 GVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKE---EVTLIVYD 67
Query: 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539
I E+G L + D + V+ +D S+ + E L+ + R G + +P +L+
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPH-HDLPVILV 125
Query: 540 ASKDDL 545
+K DL
Sbjct: 126 GNKSDL 131
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
PI + R+++ VECSA T + +VF A A L P
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---------T 134
D +L ++ S+ +S W+PE+R K PII+ G + DLR D
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK 152
Query: 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
+ E ++ + + + +ECSA T + +VF
Sbjct: 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 57
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 76 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 133
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 134 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ ++ R+ + VP +L+ +K
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNK 118
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 119 SDLPSRTVDTKQAQDLARSYGI-PFIETSAKTR 150
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVL 176
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K + LQ
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG---KYVKLQIWDT 64
Query: 483 EGVKKILS-NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G+++ S + + VYD + ++ L + L + + +L +
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGN 121
Query: 542 KDDLKP-YTMAVQDSARVTQE 561
K DL + +++R QE
Sbjct: 122 KKDLDADREVTFLEASRFAQE 142
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 57 VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 115
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE + +ET SA T V + F + +L+
Sbjct: 116 IILCGNKKDLDADREVTFLEASRFAQENELMFLET----SALTGEDVEEAFVQCARKILN 171
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ ++ G + GK++L + F+E FSE Y PT Y+ V G ++ L L + +
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVT--LGKDEFHLHLVDTAGQD 83
Query: 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKD 543
IL + + VY + +S++ + L +L E G VP +L+ +K
Sbjct: 84 EYSILPYS-FIIGVHGYVLVYSVTSLHSFQVIESLY---QKLHEGHGKTRVPVVLVGNKA 139
Query: 544 DLKP 547
DL P
Sbjct: 140 DLSP 143
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ + ++ R+ + VP +L+ +K
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTR 149
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 59
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 78 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
++ + P + + + ++ VECSA T + +VF A A L
Sbjct: 138 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALE 182
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ + ++ R+ + VP +L+ +K
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTR 149
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ ++ R+ + VP +L+ +K
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNK 118
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGI-PFIETSAKTR 150
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ +L G GK+ + L F + Y PT G + V G K + +E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
+ A C I ++D + ++K ++ R+ E+ +P +L +K
Sbjct: 71 KFGGLRDGYYIQAQC--AIIMFDVTSRVTYKNVPNWHRDLVRVCEN----IPIVLCGNKV 124
Query: 544 DLK 546
D+K
Sbjct: 125 DIK 127
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485
CLL G GKS+++ F+E F N PT G + V K LI +E
Sbjct: 9 CLL-GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERF 67
Query: 486 KKI--LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
+ + + + + A+ I VYD + E ++ K + E+ + +G P +++A
Sbjct: 68 RALAPMYYRGSAAA----IIVYDITKEETFSTLKNWVRELRQ------HGPPSIVVA 114
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ ++ G GKSAL ++ F + Y PT + Y VV + +T +L +
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI----DGETCLLDILDTA 59
Query: 484 GVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G ++ + ++ + + + + V+ ++ S++ + ++ R+ + VP +L+ +K
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNK 117
Query: 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575
DL T+ + + + + GI P I S K++
Sbjct: 118 CDLAGRTVESRQAQDLARSYGI-PYIETSAKTR 149
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ +L G GK+ + L F + Y PT G + V G K + +E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
+ A C + +F D + ++K ++ R+ E+ +P +L +K
Sbjct: 71 KFGGLRDGYYIQAQCAIIMF--DVTSRVTYKNVPNWHRDLVRVCEN----IPIVLCGNKV 124
Query: 544 DLK 546
D+K
Sbjct: 125 DIK 127
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y P + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++F+ +L G GKS+L+N ++ F T G ++ ++ G I
Sbjct: 8 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 67
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEY----SWKRTKELLVEVARLGEDSGYGVPCL 537
+E + + + + C + F D S + +WK+ + A + E + P +
Sbjct: 68 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKE---FIYYADVKEPESF--PFV 122
Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
++ +K D+ ++ +++ ++ G P S +KD NV
Sbjct: 123 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS--AKDATNV 163
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++F+ +L G GKS+L+N ++ F T G ++ ++ G I
Sbjct: 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 65
Query: 482 EEGVKKILSNKEALASCDVTIFVYDSSDEY----SWKRTKELLVEVARLGEDSGYGVPCL 537
+E + + + + C + F D S + +WK+ + A + E + P +
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKE---FIYYADVKEPESF--PFV 120
Query: 538 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNV 580
++ +K D+ ++ +++ ++ G P S +KD NV
Sbjct: 121 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS--AKDATNV 161
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAV 462
S+ RK + R LL G NAGK+ LL S + PT G + + +
Sbjct: 5 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKL 63
Query: 463 NVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE 522
NV D GG +K + + D+ I+V DS+D ++ T + L E
Sbjct: 64 NVWD-IGGQRKIRPYW-------------RSYFENTDILIYVIDSADRKRFEETGQELTE 109
Query: 523 VARLGEDSGYGVPCLLIASKDDL 545
+ + S VP L+ A+K DL
Sbjct: 110 LLEEEKLS--CVPVLIFANKQDL 130
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ +L G GK++L+ + E F++ + T + ++ GG + L + +
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN-IGGKRVNLAIWDTA-- 63
Query: 484 GVKKILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
G ++ AL + I VYD +DE S+++ K + E+ ++ G + +
Sbjct: 64 GQERF----HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM---LGNEICLCI 116
Query: 539 IASKDDL-KPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVF 581
+ +K DL K +++Q++ + +G + + ++K + +F
Sbjct: 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL F ++ F ++Y PT + Y + + + IL + G ++ + +E
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY----LKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + D + VY +D+ S++ + R+ + + P +L+A+K DL +D
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILVANKVDLMHLRKVTRD 144
Query: 555 SARVTQELGIEPPIPVSMKSKDLN 578
+ P I S K LN
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLN 168
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
++ + G Q GK++++ F F NY T G + + G + + +E
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
+ ++ + + I VYD ++ S++ T + + ++ + G V L+ +K
Sbjct: 62 RFRSLIPS--YIRDSAAAIVVYDITNRQSFENTTKWIQDIL---NERGKDVIIALVGNKT 116
Query: 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAEH 590
DL D +VT E G + K+++ N F A H
Sbjct: 117 DLG-------DLRKVTYEEGXQ-------KAQEYNTXFHETSAKAGH 149
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ +L G GK++L+ + E F++ + T + ++ GG + L + + +
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN-IGGKRVNLAIWDTAGQ 79
Query: 484 GVKKILSNKEALA-----SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538
AL + I VYD +DE S+++ K + E+ ++ G + +
Sbjct: 80 ------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM---LGNEICLCI 130
Query: 539 IASKDDL-KPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVF 581
+ +K DL K +++Q++ + +G + + ++K + +F
Sbjct: 131 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
R LL G NAGK+ LL S + PT G + + V G L G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG-----FKLNVWDIGG 57
Query: 485 VKKILSN-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
++KI + + D+ I+V DS+D ++ T + L E+ + S VP L+ A+K
Sbjct: 58 LRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQ 115
Query: 544 DL 545
DL
Sbjct: 116 DL 117
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAV 462
S+ RK + R LL G NAGK+ LL S + PT G + + +
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKL 62
Query: 463 NVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE 522
NV D GG +K + + D+ I+V DS+D ++ T + L E
Sbjct: 63 NVWD-IGGQRKIRPYW-------------RSYFENTDILIYVIDSADRKRFEETGQELTE 108
Query: 523 VARLGEDSGYGVPCLLIASKDDL 545
+ + S VP L+ A+K DL
Sbjct: 109 LLEEEKLS--CVPVLIFANKQDL 129
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ +L G GK++L+ + E F++ + T G + ++ GG + L + + +
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN-IGGKRVNLAIWDTAGQ 65
Query: 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543
L S + I VYD +DE S+++ K + E+ ++ G + ++ +K
Sbjct: 66 ERFHALGPIYYRDS-NGAILVYDITDEDSFQKVKNWVKELRKM---LGNEICLCIVGNKI 121
Query: 544 DL-KPYTMAVQDSARVTQELGIEPPIPVSMKSKDLNNVF 581
DL K +++Q++ + +G + + ++K + +F
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
F+ L+ G + GK++ L + + F+ + T G + V + + N K + LQ
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWDTA 65
Query: 484 GVKKILSNKEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542
G+++ + A I YD ++E S+ ++ ++ D+ LL+ +K
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNA---QVLLVGNK 122
Query: 543 DDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKSKDLNNVFSRII 585
D + + + R + LG E + + ++ F R++
Sbjct: 123 CDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485
CLL G GKS+++ F+E F N PT G + V K LI E
Sbjct: 10 CLL-GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 486 KKI--LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
+ + + + + A+ I VYD + E ++ K + E+ + +G P +++A
Sbjct: 69 RALAPMYYRGSAAA----IIVYDITKEETFSTLKNWVRELRQ------HGPPSIVVA 115
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNK--KTLILQ 478
R + CLL G GKS+++ F++ F N +PT G + V P GN+ K LI
Sbjct: 22 RELKVCLL-GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--PCGNELHKFLIWD 78
Query: 479 EIPEEGVKKI--LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLG 527
+E + + + + A+ + VYD + + S+ K+ + E+ G
Sbjct: 79 TAGQERFHSLAPMYYRGSAAA----VIVYDITKQDSFYTLKKWVKELKEHG 125
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 40/180 (22%)
Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKKTLI 476
+ G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++ ++
Sbjct: 6 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 65
Query: 477 LQEIPEEGVKKILSNKEALASCDVT--IFVYDSSDEYSWKRTK----ELLVEVARLGEDS 530
Q S D+ I VY + S++ K +LL V ++
Sbjct: 66 PQTY----------------SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---- 105
Query: 531 GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLN-NVFSRIIWAAE 589
+P +L+ +K DL + + + E + S K +VF RII AE
Sbjct: 106 --QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 163
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 40/180 (22%)
Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKKTLI 476
+ G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++ ++
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 70
Query: 477 LQEIPEEGVKKILSNKEALASCDVT--IFVYDSSDEYSWKRTK----ELLVEVARLGEDS 530
Q S D+ I VY + S++ K +LL V ++
Sbjct: 71 PQTY----------------SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---- 110
Query: 531 GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLN-NVFSRIIWAAE 589
+P +L+ +K DL + + + E + S K +VF RII AE
Sbjct: 111 --QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------EQYAVNVVDQPGGNKKTLI 476
R LL G NAGK+ LL S + PT G + + +NV D GG +K
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWD-IGGQRKIRP 63
Query: 477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536
+ + D+ I+V DS+D ++ T + L E+ + S VP
Sbjct: 64 YW-------------RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS--CVPV 108
Query: 537 LLIASKDDL 545
L+ A+K DL
Sbjct: 109 LIFANKQDL 117
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
++ ++ G GKSAL F++ F E Y PT + Y V VD + +L+ +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD-----AQQCMLEILDT 58
Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ + ++ + + VY + + ++ ++L ++ R+ + VP +L+ +
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD--DVPMILVGN 116
Query: 542 KDDLK 546
K DL+
Sbjct: 117 KCDLE 121
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL F ++ F +Y PT + Y + + + IL + G ++ + +E
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY----LKHTEIDNQWAILDVLDTAGQEEFSAMREQY 81
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + D + VY +D+ S++ + R+ + + P +L+A+K DL +D
Sbjct: 82 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILVANKVDLMHLRKVTRD 139
Query: 555 SARVTQELGIEPPIPVSMKSKDLN 578
+ P I S K LN
Sbjct: 140 QGKEMATKYNIPYIETSAKDPPLN 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL F ++ F + Y PT + Y + + + IL + G ++ + +E
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHT----EIDNQWAILDVLDTAGQEEFSAMREQY 86
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + D + VY +D+ S++ + R+ + + P +L+A+K DL +D
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILVANKVDLMHLRKVTRD 144
Query: 555 SARVTQELGIEPPIPVSMKSKDLN 578
+ P I S K LN
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLN 168
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 40/180 (22%)
Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKKTLI 476
+ G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++ ++
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 70
Query: 477 LQEIPEEGVKKILSNKEALASCDVT--IFVYDSSDEYSWKRTK----ELLVEVARLGEDS 530
Q S D+ I VY + S++ K +LL V ++
Sbjct: 71 PQTY----------------SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---- 110
Query: 531 GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLN-NVFSRIIWAAE 589
+P +L+ +K DL + + + E + S K +VF RII AE
Sbjct: 111 --QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G + GK++ L + + F+ + T G + V + + N K + LQ
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWDT 61
Query: 483 EGVKKILSNKEALASCDVT-IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ + A + I +YD ++E S+ ++ ++ D+ LL+ +
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA---QVLLVGN 118
Query: 542 KDDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKSKDLNNVFSRII 585
K D++ + + R + LG E + + ++ F R++
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
++ ++ G GKSAL F++ F E Y PT + Y V VD + +L+ +
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD-----AQQCMLEILDT 60
Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ + ++ + + VY + + ++ ++L ++ R+ + VP +L+ +
Sbjct: 61 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD--DVPMILVGN 118
Query: 542 KDDLK 546
K DL+
Sbjct: 119 KCDLE 123
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
VF+ +L G GK+ LL+ F FS + T G +++ V K I
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 483 EGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
E + I S + A+ + + V+D + ++ + L E+ E + + +L+
Sbjct: 85 ERYRAITSAYYRGAVGA----LLVFDLTKHQTYAVVERWLKELYDHAEAT---IVVMLVG 137
Query: 541 SKDDLKPYTMAVQDSARVTQE 561
+K DL + AR+ E
Sbjct: 138 NKSDLSQAREVPTEEARMFAE 158
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
VF+ +L G GK+ LL+ F FS + T G +++ V K I
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 483 EGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
E + I S + A+ + + V+D + ++ + L E+ E + + +L+
Sbjct: 70 ERYRAITSAYYRGAVGA----LLVFDLTKHQTYAVVERWLKELYDHAEAT---IVVMLVG 122
Query: 541 SKDDLKPYTMAVQDSARVTQE 561
+K DL + AR+ E
Sbjct: 123 NKSDLSQAREVPTEEARMFAE 143
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
++ ++ G GKSAL F++ F E Y PT + Y V VD + +L+ +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDC-----QQCMLEILDT 58
Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ + ++ + + VY + + ++ ++L ++ R+ + VP +L+ +
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGN 116
Query: 542 KDDLK 546
K DL+
Sbjct: 117 KCDLE 121
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487
+ G ++GKSAL++ +L + + +P G VVD G L++++ E G +
Sbjct: 25 IVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD---GQSYLLLIRD--EGGPPE 79
Query: 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547
+ + A D +FV+ DE S++ + + S VP +L+ ++D +
Sbjct: 80 L----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISA 133
Query: 548 YTMAVQDSAR 557
V D +R
Sbjct: 134 ANPRVIDDSR 143
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL F ++ F Y PT + Y + + + IL + G ++ + +E
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY----LKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + D + VY +D+ S++ + R+ + + P +L+A+K DL +D
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILVANKVDLMHLRKVTRD 144
Query: 555 SARVTQELGIEPPIPVSMKSKDLN 578
+ P I S K LN
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLN 168
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
R + G +GKS+L++ FL + + T EQY + VD G ++++E E
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVD---GQTHLVLIRE--E 61
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL-GEDSGYGVPCLLIAS 541
G + + D IFV+ DE S++ L +++ L GE G G+ L+ +
Sbjct: 62 AGAP----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG-GLALALVGT 116
Query: 542 KDDLKPYTMAVQDSAR 557
+D + + V AR
Sbjct: 117 QDRISASSPRVVGDAR 132
>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 286 GDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345
GD R++F+ K D+ A A FL G+ D D DGAV A+ LTA
Sbjct: 68 GDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARA-LTA 126
Query: 346 PESPWDEAPYKDAAETT 362
P D A AA T
Sbjct: 127 FGVPEDLARQAAAALDT 143
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
R + G +GKS+L++ FL + + T EQY + VD G ++++E E
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVD---GQTHLVLIRE--E 61
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARL-GEDSGYGVPCLLIAS 541
G + + D IFV+ DE S++ L +++ L GE G G+ L+ +
Sbjct: 62 AGAP----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG-GLALALVGT 116
Query: 542 KDDLKPYTMAVQDSAR 557
+D + + V AR
Sbjct: 117 QDRISASSPRVVGDAR 132
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487
+FG GKSAL+ FL + F Y PT Y Q + + + ++ + G +
Sbjct: 33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR----HQATIDDEVVSMEILDTAGQED 88
Query: 488 ILSNKEALASCDVTIFVYDSSDEYSWKRT---KELLVEVARLGEDSGYGVPCLLIASKDD 544
+ + + + + VYD +D S++ K +L E+ + V +L+ +K D
Sbjct: 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-----PKNVTLILVGNKAD 143
Query: 545 L 545
L
Sbjct: 144 L 144
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 7 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 63 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 92
>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 286 GDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345
GD R++F+ K D+ A A FL G+ D D DGAV A+ LTA
Sbjct: 68 GDQRITREEFVTGAVKRLRDKPDRFAEIARPFLHAALGVADTDGDGAVTVADTARA-LTA 126
Query: 346 PESPWDEAPYKDAAETT 362
P D A AA T
Sbjct: 127 FGVPEDLARQAAAALDT 143
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDTSSSLENKGKLN 77
KS+L T + EK P DFY + V I+DT+ + + +
Sbjct: 16 KSALTVQFVTGTFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 69
Query: 78 EELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLDL 127
+K +L Y+ Q + + + ++R E KVP+I+ G K+DL
Sbjct: 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQY--AVNVVDQPGGNKKTLILQEIPEEGVKKILSNK 492
GKSAL F+ F E Y PT + Y + V P +L+ + G ++ S +
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPS------VLEILDTAGTEQFASMR 68
Query: 493 E-ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 551
+ + + I VY ++ S++ K + ++ R+ VP +L+ +K DL+
Sbjct: 69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREV 126
Query: 552 VQDSARVTQELGIEPPIPVSMKSKDL-NNVFSRII 585
R E P + S KSK + + +F+ I+
Sbjct: 127 SSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
GKSAL ++ F + Y PT + Y VV + +T +L + GV++ + ++
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGVEEYSAMRDQ 70
Query: 495 -LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESR 128
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 129 QAQDLARSYGI-PYIETSAKTR 149
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV-VDQPGGNKKTLILQEIPE 482
++ ++ G GKSAL F++ F + Y PT + Y V VD + +L+ +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDC-----QQCMLEILDT 58
Query: 483 EGVKKILSNKEA-LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 541
G ++ + ++ + + VY + + ++ ++L ++ R+ + VP +L+ +
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGN 116
Query: 542 KDDLK 546
K DL+
Sbjct: 117 KCDLE 121
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 TESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-KGKLNEELKRADAVVL 88
+S+ ++ V A R+ D YPD + + + LE K KL EELK+ADA +L
Sbjct: 185 VDSLRRELIEVLAEIRVELD-YPDEIETNTGEVVTRLERIKEKLTEELKKADAGIL 239
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 40 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
GKSAL ++ F + Y PT + Y VV + +T +L + G+++ + ++
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGIEEYSAMRDQ 70
Query: 495 -LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESR 128
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 129 QAQDLARSYGI-PYIETSAKTR 149
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL ++ F E Y PT + Y VV + +T +L + G ++ + ++
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESRQ 129
Query: 555 SARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 130 AQDLARSYGI-PYIETSAKTR 149
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA- 494
KSAL ++ F + Y PT E Y VV + +T +L + G ++ + ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESRQ 129
Query: 555 SARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 130 AQDLARSYGI-PYIETSAKTR 149
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 285 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 344
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 345 PT-EAELQDMINEVDADGNGTI 365
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 23 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 82
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 83 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
>pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 519
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 230 LQPAEIVGVKRVVQEKQHDGVND----LGLT-----------LSGFLFLHALFIEKGRL- 273
LQP +++ K+VVQE + + LGL LSG AL +E+GRL
Sbjct: 289 LQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERGRLV 348
Query: 274 -----ETTWAVLRKFG-YGD 287
TW +KFG YGD
Sbjct: 349 DMMLDSHTWLHGKKFGLYGD 368
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 P-TEAELQDMINEVDADGNGTI 364
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 247 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 306
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 307 PT-EAELQDMINEVDADGNGTI 327
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 24 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 83
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 84 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE-QYAVNVVDQPGGNKKTLILQEIPE 482
++ L G GK+ +N L+ F +NY T G + V +D G K + +
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV-ARLGEDSGYGVPCLLIAS 541
E K +L + + + +F +D + + + + E A +G ++ P ++ A+
Sbjct: 72 EK-KAVLKDVYYIGASGAILF-FDVTSRITCQNLARWVKEFQAVVGNEA----PIVVCAN 125
Query: 542 KDDLK 546
K D+K
Sbjct: 126 KIDIK 130
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 116 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 150
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G + GK++ L + + F+ + T G + V V + K I +
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 483 EGVKKILSN--KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540
E + I + + A+ I +YD ++E S+ ++ ++ D+ +L+
Sbjct: 83 ERYRTITTAYYRGAMG----FILMYDITNEESFNAVQDWATQIKTYSWDNA---QVILVG 135
Query: 541 SKDDLKPYTMAVQDSAR-VTQELGIEPPIPVSMKSKDLNNVFSRII 585
+K D++ + + + + ++LG + + ++ + F R++
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
GKSAL ++ F + Y PT + Y VV + +T +L + G+++ + ++
Sbjct: 20 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQ 75
Query: 495 -LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 76 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESR 133
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 134 QAQDLARSYGI-PYIETSAKTR 154
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
GKSAL ++ F + Y PT + Y VV + +T +L + G+++ + ++
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQ 70
Query: 495 -LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESR 128
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 129 QAQDLARSYGI-PYIETSAKTR 149
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 80 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 114
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNK-E 493
GKSAL ++ F + Y PT + Y VV + +T +L + G ++ + + E
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDE 70
Query: 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKCDLAARTVESR 128
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 129 QAQDLARSYGI-PYIETSAKTR 149
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 423 VFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTGE---------QYAVNVVDQPGGN 471
V + L G N GKS+L+N+ L ER N A TT + Q +VD G
Sbjct: 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254
Query: 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD 509
KK + + + V + L +A+ +V V D +
Sbjct: 255 KKGKVYETTEKYSVLRAL---KAIDRSEVVAVVLDGEE 289
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 312 SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352
++ E +R F ++D D DG + PAEL + + E DE
Sbjct: 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDE 119
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 435 GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
GKSAL ++ F + Y PT + Y VV + +T +L + G ++ + ++
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQ 70
Query: 495 -LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 553
+ + + + V+ ++ S++ + ++ R+ + VP +L+ +K DL T+ +
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESR 128
Query: 554 DSARVTQELGIEPPIPVSMKSK 575
+ + + GI P I S K++
Sbjct: 129 QAQDLARSYGI-PYIETSAKTR 149
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 514 KRTKELLVEVARLGEDSGYGVPCLL-IASKD-DLKPYTMAVQDSARVTQELGIEPPIPVS 571
K TKE+ V++ S YG+ CL+ I++++ D T+ ++++ + E+ P I
Sbjct: 104 KNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI--- 160
Query: 572 MKSKDLNNVFSRIIW 586
K + F IIW
Sbjct: 161 --VKVFHGAFMDIIW 173
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 390 NLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFR--------CLLFGPQNAGKSALLN 441
+L ++ + G PA V K ++D+KK + R+V C+LF +L+
Sbjct: 884 SLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLF---------ILD 934
Query: 442 SFLERPFSENYAPTTGE--QYAVNVVDQPGGNKKTLILQEIP 481
++ A TTGE + V PG +T++L IP
Sbjct: 935 EMRKKSLKGERA-TTGEGLDWGVLFGFGPGLTIETVVLHSIP 975
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 80 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 114
>pdb|1IZL|A Chain A, Crystal Structure Of Photosystem Ii
pdb|1IZL|J Chain J, Crystal Structure Of Photosystem Ii
Length = 360
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 221 FQVKCFNAPLQPAEIVGVKRVVQEKQHD-GVNDLGLTLSGFLFLHALFIEKGRLETTWA- 278
FQ FN + RVV G++ + L+GF F H++ KG + TWA
Sbjct: 260 FQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWAD 319
Query: 279 VLRKFGYGDDLELRDDFLPVPTKLSPDQSVELA 311
++ + G ++ + P L+ +S +A
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLASAESAPVA 352
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 316 EFLRGIFGLYDIDNDGAVRPAELEDL 341
E LR F LYD+DNDG + E+ D+
Sbjct: 99 EKLRWAFKLYDLDNDGYITRNEMLDI 124
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ +L G GKS+++ F+ F+EN PT G +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF 40
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAA-ETTALGNL 367
EL E + + F L+D D DG + EL + + ++P EA +D E A GN
Sbjct: 3 ELTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNG 61
Query: 368 TL 369
T+
Sbjct: 62 TI 63
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 83 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 117
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 436 KSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495
KSAL F++ F +Y PT + Y + G + IL +E + ++ +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAM--REQYM 78
Query: 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546
+ + V+ +D S+ +L ++ R+ + + P +L+ +K DL+
Sbjct: 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLVGNKADLE 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,688,731
Number of Sequences: 62578
Number of extensions: 741113
Number of successful extensions: 2477
Number of sequences better than 100.0: 270
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 383
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)