Query 006490
Match_columns 643
No_of_seqs 517 out of 4805
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 00:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 1.5E-95 3E-100 743.4 48.7 615 6-639 3-625 (625)
2 COG1160 Predicted GTPases [Gen 100.0 7.8E-46 1.7E-50 374.7 29.9 330 13-599 4-361 (444)
3 PRK03003 GTP-binding protein D 100.0 8.7E-40 1.9E-44 353.0 35.5 330 11-598 37-391 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 1.4E-37 3.1E-42 335.1 34.1 326 14-597 1-352 (429)
5 PRK00093 GTP-binding protein D 100.0 1.7E-36 3.8E-41 326.8 33.9 326 13-596 2-351 (435)
6 PRK09518 bifunctional cytidyla 100.0 1.7E-36 3.6E-41 342.2 34.7 332 12-599 275-631 (712)
7 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-29 4.3E-34 225.4 17.5 165 421-590 7-173 (205)
8 KOG0092 GTPase Rab5/YPT51 and 100.0 1.5E-28 3.2E-33 219.0 16.4 165 422-592 4-170 (200)
9 KOG0078 GTP-binding protein SE 100.0 8.7E-28 1.9E-32 218.7 18.6 166 419-590 8-175 (207)
10 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.8E-28 1.5E-32 214.2 16.8 165 422-591 21-187 (221)
11 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.4E-28 1.4E-32 215.8 14.8 168 7-178 4-174 (205)
12 KOG0092 GTPase Rab5/YPT51 and 100.0 8.1E-28 1.8E-32 214.3 14.1 166 10-180 3-171 (200)
13 KOG0098 GTPase Rab2, small G p 99.9 5.4E-27 1.2E-31 206.6 16.3 162 422-589 5-168 (216)
14 KOG0079 GTP-binding protein H- 99.9 3.1E-27 6.8E-32 199.2 13.4 162 423-591 8-171 (198)
15 KOG0080 GTPase Rab18, small G 99.9 7.2E-27 1.6E-31 200.0 15.5 164 422-590 10-175 (209)
16 KOG0394 Ras-related GTPase [Ge 99.9 7E-27 1.5E-31 205.6 15.2 171 420-592 6-181 (210)
17 cd04121 Rab40 Rab40 subfamily. 99.9 5.4E-26 1.2E-30 215.0 21.3 168 422-596 5-174 (189)
18 KOG0078 GTP-binding protein SE 99.9 2.2E-26 4.8E-31 209.6 16.1 170 3-177 3-175 (207)
19 KOG0080 GTPase Rab18, small G 99.9 1.1E-26 2.5E-31 198.7 13.1 168 7-179 6-177 (209)
20 cd04133 Rop_like Rop subfamily 99.9 4.8E-26 1.1E-30 212.9 17.8 163 13-177 2-174 (176)
21 cd04133 Rop_like Rop subfamily 99.9 7.4E-26 1.6E-30 211.7 18.8 161 424-591 2-175 (176)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.9E-26 1.1E-30 214.3 17.5 165 10-176 3-180 (182)
23 cd04120 Rab12 Rab12 subfamily. 99.9 9.9E-26 2.2E-30 215.2 19.7 160 424-589 1-163 (202)
24 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 2.8E-26 6.1E-31 204.0 14.2 167 8-179 18-188 (221)
25 KOG0093 GTPase Rab3, small G p 99.9 6.9E-26 1.5E-30 191.0 15.0 163 421-589 19-183 (193)
26 KOG0087 GTPase Rab11/YPT3, sma 99.9 6.9E-26 1.5E-30 204.8 15.7 163 420-588 11-175 (222)
27 cd01875 RhoG RhoG subfamily. 99.9 1E-25 2.2E-30 214.8 17.5 168 11-179 2-180 (191)
28 KOG0098 GTPase Rab2, small G p 99.9 5.4E-26 1.2E-30 200.3 13.5 161 11-176 5-168 (216)
29 cd04121 Rab40 Rab40 subfamily. 99.9 1.4E-25 3.1E-30 212.1 17.4 162 11-177 5-168 (189)
30 cd04131 Rnd Rnd subfamily. Th 99.9 1.2E-25 2.7E-30 211.2 16.7 162 12-176 1-176 (178)
31 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.7E-25 5.9E-30 209.2 19.0 161 422-589 4-180 (182)
32 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.6E-25 5.6E-30 215.8 18.7 166 10-178 11-190 (232)
33 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.4E-25 5.2E-30 209.1 17.3 161 13-175 2-174 (175)
34 cd04122 Rab14 Rab14 subfamily. 99.9 8.1E-25 1.8E-29 204.1 20.4 161 423-589 2-164 (166)
35 cd04120 Rab12 Rab12 subfamily. 99.9 3.4E-25 7.3E-30 211.6 17.8 161 13-177 1-164 (202)
36 KOG0394 Ras-related GTPase [Ge 99.9 9.5E-26 2.1E-30 198.5 12.1 170 7-179 4-181 (210)
37 cd01892 Miro2 Miro2 subfamily. 99.9 8.6E-25 1.9E-29 204.3 19.4 164 421-591 2-168 (169)
38 cd04131 Rnd Rnd subfamily. Th 99.9 6.2E-25 1.3E-29 206.4 18.4 158 424-588 2-175 (178)
39 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6.3E-25 1.4E-29 212.1 18.7 168 13-181 2-181 (222)
40 cd01893 Miro1 Miro1 subfamily. 99.9 9E-25 2E-29 203.8 18.7 165 13-177 1-165 (166)
41 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.4E-24 2.9E-29 203.5 19.9 161 423-589 2-164 (172)
42 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.4E-24 2.9E-29 210.8 20.4 162 422-590 12-189 (232)
43 KOG0086 GTPase Rab4, small G p 99.9 4.1E-25 8.8E-30 187.4 14.5 163 421-589 7-171 (214)
44 cd01867 Rab8_Rab10_Rab13_like 99.9 1.8E-24 3.9E-29 202.0 20.5 161 423-589 3-165 (167)
45 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.5E-24 3.3E-29 208.8 20.3 165 424-590 1-169 (201)
46 KOG0079 GTP-binding protein H- 99.9 9.5E-26 2.1E-30 190.2 10.3 160 12-176 8-169 (198)
47 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-24 2.7E-29 205.3 19.3 166 424-596 1-173 (182)
48 cd01865 Rab3 Rab3 subfamily. 99.9 2.4E-24 5.1E-29 200.8 20.3 160 424-589 2-163 (165)
49 cd01875 RhoG RhoG subfamily. 99.9 1.7E-24 3.8E-29 206.3 19.3 162 423-591 3-179 (191)
50 cd01871 Rac1_like Rac1-like su 99.9 1E-24 2.2E-29 204.7 16.8 161 12-174 1-173 (174)
51 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.3E-24 2.8E-29 203.6 17.4 161 12-177 2-165 (172)
52 cd04109 Rab28 Rab28 subfamily. 99.9 3.3E-24 7.1E-29 208.5 20.5 165 424-591 1-168 (215)
53 cd04117 Rab15 Rab15 subfamily. 99.9 3.1E-24 6.6E-29 199.0 19.2 158 424-587 1-160 (161)
54 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.3E-24 9.2E-29 199.3 20.3 161 423-589 2-164 (166)
55 cd04136 Rap_like Rap-like subf 99.9 3E-24 6.5E-29 199.6 19.1 159 424-588 2-162 (163)
56 KOG0091 GTPase Rab39, small G 99.9 9.1E-25 2E-29 187.7 13.9 163 422-588 7-172 (213)
57 cd04134 Rho3 Rho3 subfamily. 99.9 1.9E-24 4E-29 205.9 17.4 167 13-180 1-178 (189)
58 cd04175 Rap1 Rap1 subgroup. T 99.9 4.6E-24 1E-28 198.6 19.5 160 424-589 2-163 (164)
59 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6E-24 1.3E-28 197.2 19.8 159 424-588 2-161 (162)
60 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.7E-24 8E-29 201.0 18.4 158 424-588 2-174 (175)
61 cd04119 RJL RJL (RabJ-Like) su 99.9 6.5E-24 1.4E-28 198.2 20.1 163 424-589 1-167 (168)
62 cd01864 Rab19 Rab19 subfamily. 99.9 6.8E-24 1.5E-28 197.7 19.9 160 423-587 3-164 (165)
63 cd01868 Rab11_like Rab11-like. 99.9 8.7E-24 1.9E-28 197.0 20.4 160 423-588 3-164 (165)
64 cd04127 Rab27A Rab27a subfamil 99.9 9.2E-24 2E-28 199.8 20.7 163 422-589 3-177 (180)
65 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 8.7E-24 1.9E-28 197.6 20.2 160 425-589 2-165 (170)
66 cd04136 Rap_like Rap-like subf 99.9 3.1E-24 6.7E-29 199.5 17.0 159 12-175 1-162 (163)
67 cd04122 Rab14 Rab14 subfamily. 99.9 3.9E-24 8.5E-29 199.5 17.4 160 12-176 2-164 (166)
68 cd04110 Rab35 Rab35 subfamily. 99.9 1.1E-23 2.3E-28 202.4 20.8 161 422-589 5-167 (199)
69 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1E-23 2.2E-28 203.7 20.3 161 424-591 2-178 (222)
70 cd04116 Rab9 Rab9 subfamily. 99.9 1.2E-23 2.6E-28 197.1 20.3 164 422-587 4-169 (170)
71 cd04175 Rap1 Rap1 subgroup. T 99.9 4.7E-24 1E-28 198.5 17.3 159 12-175 1-162 (164)
72 PLN03071 GTP-binding nuclear p 99.9 7.2E-24 1.6E-28 206.1 19.2 161 421-589 11-172 (219)
73 PLN03071 GTP-binding nuclear p 99.9 1.3E-23 2.9E-28 204.2 20.9 163 9-178 10-174 (219)
74 cd01866 Rab2 Rab2 subfamily. 99.9 1.5E-23 3.3E-28 195.9 20.5 161 423-589 4-166 (168)
75 cd04111 Rab39 Rab39 subfamily. 99.9 1.4E-23 2.9E-28 203.1 20.6 162 423-589 2-166 (211)
76 KOG0087 GTPase Rab11/YPT3, sma 99.9 2.7E-24 5.8E-29 194.5 14.4 165 7-176 9-176 (222)
77 cd00877 Ran Ran (Ras-related n 99.9 1E-23 2.2E-28 196.4 18.7 159 424-590 1-160 (166)
78 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-23 2.7E-28 200.9 19.7 168 424-592 1-177 (198)
79 KOG0095 GTPase Rab30, small G 99.9 4.4E-24 9.6E-29 180.3 14.1 161 422-588 6-168 (213)
80 cd04112 Rab26 Rab26 subfamily. 99.9 1.9E-23 4.2E-28 199.3 20.4 163 424-592 1-166 (191)
81 smart00174 RHO Rho (Ras homolo 99.9 4.9E-24 1.1E-28 200.5 16.1 162 15-177 1-173 (174)
82 cd01871 Rac1_like Rac1-like su 99.9 1.2E-23 2.5E-28 197.4 18.5 157 424-587 2-173 (174)
83 cd04140 ARHI_like ARHI subfami 99.9 8.3E-24 1.8E-28 197.1 17.3 157 12-173 1-162 (165)
84 cd04124 RabL2 RabL2 subfamily. 99.9 1.9E-23 4E-28 193.8 19.5 158 424-590 1-159 (161)
85 cd04176 Rap2 Rap2 subgroup. T 99.9 1.5E-23 3.2E-28 195.0 18.8 159 424-588 2-162 (163)
86 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-23 2.4E-28 203.3 18.4 159 13-176 1-190 (220)
87 cd04134 Rho3 Rho3 subfamily. 99.9 1.5E-23 3.2E-28 199.7 19.0 161 425-592 2-177 (189)
88 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-23 4.5E-28 193.7 19.4 157 424-587 1-161 (162)
89 PTZ00369 Ras-like protein; Pro 99.9 1.9E-23 4.1E-28 199.1 19.5 161 423-589 5-167 (189)
90 smart00173 RAS Ras subfamily o 99.9 2E-23 4.4E-28 194.3 19.3 160 424-589 1-162 (164)
91 cd04125 RabA_like RabA-like su 99.9 2.5E-23 5.5E-28 198.2 20.1 160 424-589 1-162 (188)
92 cd04144 Ras2 Ras2 subfamily. 99.9 1.5E-23 3.2E-28 200.0 18.5 161 425-589 1-163 (190)
93 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.9E-23 6.3E-28 193.2 19.9 160 423-588 2-163 (164)
94 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.3E-23 2.9E-28 202.2 18.0 162 13-178 1-170 (201)
95 cd01865 Rab3 Rab3 subfamily. 99.9 1.2E-23 2.7E-28 195.9 17.2 159 13-176 2-163 (165)
96 cd04113 Rab4 Rab4 subfamily. 99.9 2.5E-23 5.4E-28 193.0 19.0 158 424-587 1-160 (161)
97 cd04103 Centaurin_gamma Centau 99.9 1.1E-23 2.3E-28 194.2 16.4 153 13-174 1-157 (158)
98 cd01867 Rab8_Rab10_Rab13_like 99.9 1.5E-23 3.2E-28 195.8 17.5 160 12-176 3-165 (167)
99 PF08356 EF_assoc_2: EF hand a 99.9 9.8E-25 2.1E-29 172.2 7.9 88 227-315 1-89 (89)
100 cd04140 ARHI_like ARHI subfami 99.9 3.2E-23 7E-28 193.1 19.6 160 424-587 2-163 (165)
101 cd04144 Ras2 Ras2 subfamily. 99.9 1E-23 2.2E-28 201.1 16.5 160 14-178 1-165 (190)
102 cd04117 Rab15 Rab15 subfamily. 99.9 1.4E-23 3E-28 194.6 16.8 157 13-174 1-160 (161)
103 PTZ00369 Ras-like protein; Pro 99.9 1.5E-23 3.2E-28 199.8 17.4 163 10-177 3-168 (189)
104 cd04176 Rap2 Rap2 subgroup. T 99.9 1.7E-23 3.8E-28 194.5 17.3 159 12-175 1-162 (163)
105 cd04124 RabL2 RabL2 subfamily. 99.9 1.9E-23 4E-28 193.8 17.2 156 13-176 1-158 (161)
106 cd04148 RGK RGK subfamily. Th 99.9 4.9E-23 1.1E-27 200.5 20.7 190 424-620 1-197 (221)
107 cd04119 RJL RJL (RabJ-Like) su 99.9 2E-23 4.4E-28 194.9 17.2 159 13-176 1-167 (168)
108 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.2E-23 4.7E-28 194.5 17.4 160 12-176 2-164 (166)
109 PLN03110 Rab GTPase; Provision 99.9 4.8E-23 1E-27 200.1 20.4 162 422-589 11-174 (216)
110 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2E-23 4.4E-28 197.0 17.2 160 13-177 1-167 (182)
111 cd04127 Rab27A Rab27a subfamil 99.9 1.9E-23 4E-28 197.7 16.8 161 11-176 3-177 (180)
112 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.9E-23 6.3E-28 193.1 17.8 159 12-175 2-163 (164)
113 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3E-23 6.5E-28 192.5 17.7 158 12-175 1-161 (162)
114 cd01873 RhoBTB RhoBTB subfamil 99.9 2.6E-23 5.7E-28 197.9 17.4 157 12-174 2-194 (195)
115 smart00173 RAS Ras subfamily o 99.9 3.1E-23 6.6E-28 193.1 17.5 159 13-176 1-162 (164)
116 cd00877 Ran Ran (Ras-related n 99.9 2.6E-23 5.7E-28 193.7 17.0 158 13-177 1-160 (166)
117 cd04115 Rab33B_Rab33A Rab33B/R 99.9 7.7E-23 1.7E-27 191.5 20.1 161 423-588 2-168 (170)
118 cd04132 Rho4_like Rho4-like su 99.9 5E-23 1.1E-27 196.0 19.1 160 424-590 1-168 (187)
119 cd04132 Rho4_like Rho4-like su 99.9 2.9E-23 6.3E-28 197.7 17.3 164 13-178 1-169 (187)
120 cd04106 Rab23_lke Rab23-like s 99.9 2.2E-23 4.8E-28 193.5 16.2 157 13-174 1-161 (162)
121 cd01863 Rab18 Rab18 subfamily. 99.9 7.6E-23 1.6E-27 189.8 19.7 159 424-587 1-160 (161)
122 KOG0093 GTPase Rab3, small G p 99.9 1.1E-23 2.3E-28 177.8 12.4 160 12-176 21-183 (193)
123 cd01861 Rab6 Rab6 subfamily. 99.9 7.7E-23 1.7E-27 189.7 19.2 158 424-587 1-160 (161)
124 cd04110 Rab35 Rab35 subfamily. 99.9 4.6E-23 1E-27 197.9 18.2 163 11-178 5-169 (199)
125 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.7E-23 8.1E-28 193.3 16.9 160 14-176 2-165 (170)
126 KOG0393 Ras-related small GTPa 99.9 3.6E-24 7.8E-29 196.5 9.7 168 11-180 3-183 (198)
127 smart00176 RAN Ran (Ras-relate 99.9 6.3E-23 1.4E-27 195.6 18.4 154 429-590 1-155 (200)
128 smart00174 RHO Rho (Ras homolo 99.9 5.6E-23 1.2E-27 193.3 17.5 157 426-589 1-172 (174)
129 PF00071 Ras: Ras family; Int 99.9 8.4E-23 1.8E-27 189.7 18.5 159 425-589 1-161 (162)
130 cd04109 Rab28 Rab28 subfamily. 99.9 4.1E-23 8.9E-28 200.8 17.0 161 13-178 1-168 (215)
131 cd04135 Tc10 TC10 subfamily. 99.9 4.1E-23 8.9E-28 194.2 16.5 161 13-175 1-173 (174)
132 KOG0095 GTPase Rab30, small G 99.9 1E-23 2.2E-28 178.2 10.8 162 10-176 5-169 (213)
133 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4.3E-23 9.2E-28 193.9 16.4 159 13-173 1-171 (173)
134 cd04112 Rab26 Rab26 subfamily. 99.9 6.5E-23 1.4E-27 195.7 17.8 162 13-179 1-166 (191)
135 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.5E-22 3.2E-27 188.4 19.8 158 424-588 1-163 (164)
136 cd04143 Rhes_like Rhes_like su 99.9 1.2E-22 2.5E-27 200.3 20.1 172 424-599 1-181 (247)
137 smart00175 RAB Rab subfamily o 99.9 1.4E-22 3.1E-27 188.5 19.7 160 424-589 1-162 (164)
138 cd01868 Rab11_like Rab11-like. 99.9 5.8E-23 1.2E-27 191.4 17.0 159 12-175 3-164 (165)
139 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-22 2.3E-27 196.5 19.4 156 424-589 1-190 (220)
140 cd04118 Rab24 Rab24 subfamily. 99.9 1.1E-22 2.4E-27 194.6 19.4 159 424-589 1-166 (193)
141 cd01860 Rab5_related Rab5-rela 99.9 1.8E-22 4E-27 187.6 20.2 159 424-588 2-162 (163)
142 cd01866 Rab2 Rab2 subfamily. 99.9 7.9E-23 1.7E-27 191.0 17.5 160 12-176 4-166 (168)
143 PLN03108 Rab family protein; P 99.9 2.1E-22 4.6E-27 194.8 21.0 162 422-589 5-168 (210)
144 cd04142 RRP22 RRP22 subfamily. 99.9 1E-22 2.2E-27 194.6 18.3 164 13-180 1-178 (198)
145 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.5E-24 7.6E-29 177.4 7.0 161 428-594 2-165 (192)
146 cd01864 Rab19 Rab19 subfamily. 99.9 6.1E-23 1.3E-27 191.2 16.4 159 12-174 3-164 (165)
147 PLN03110 Rab GTPase; Provision 99.9 9.8E-23 2.1E-27 197.9 18.2 171 2-177 2-175 (216)
148 cd04177 RSR1 RSR1 subgroup. R 99.9 1.9E-22 4.2E-27 188.4 19.4 161 424-589 2-164 (168)
149 cd04113 Rab4 Rab4 subfamily. 99.9 7.5E-23 1.6E-27 189.8 16.3 157 13-174 1-160 (161)
150 PF00071 Ras: Ras family; Int 99.9 5.2E-23 1.1E-27 191.1 15.0 158 14-176 1-161 (162)
151 cd01892 Miro2 Miro2 subfamily. 99.9 9.3E-23 2E-27 190.5 16.5 164 9-177 1-167 (169)
152 cd01862 Rab7 Rab7 subfamily. 99.9 3.3E-22 7.2E-27 187.6 20.2 165 424-590 1-168 (172)
153 KOG0086 GTPase Rab4, small G p 99.9 4.1E-23 8.8E-28 175.3 12.3 166 7-177 4-172 (214)
154 cd01873 RhoBTB RhoBTB subfamil 99.9 1.6E-22 3.4E-27 192.6 17.9 156 423-587 2-194 (195)
155 KOG0088 GTPase Rab21, small G 99.9 1.1E-23 2.4E-28 179.8 8.8 165 9-178 10-177 (218)
156 KOG0088 GTPase Rab21, small G 99.9 2E-23 4.3E-28 178.2 10.2 162 421-588 11-174 (218)
157 cd04149 Arf6 Arf6 subfamily. 99.9 8.5E-23 1.8E-27 190.5 15.3 157 10-173 7-167 (168)
158 smart00176 RAN Ran (Ras-relate 99.9 9.3E-23 2E-27 194.4 15.8 154 18-178 1-156 (200)
159 cd04143 Rhes_like Rhes_like su 99.9 1.6E-22 3.4E-27 199.4 17.9 163 13-179 1-174 (247)
160 cd04125 RabA_like RabA-like su 99.9 1.6E-22 3.4E-27 192.7 17.2 160 13-177 1-163 (188)
161 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-22 3.4E-27 188.3 16.9 158 13-175 1-163 (164)
162 cd01870 RhoA_like RhoA-like su 99.9 1.6E-22 3.5E-27 190.3 17.1 162 13-175 2-174 (175)
163 cd04103 Centaurin_gamma Centau 99.9 2.7E-22 5.9E-27 184.8 18.1 153 424-587 1-157 (158)
164 PLN03118 Rab family protein; P 99.9 4.4E-22 9.5E-27 193.1 20.4 170 422-597 13-185 (211)
165 cd04177 RSR1 RSR1 subgroup. R 99.9 2.4E-22 5.2E-27 187.8 17.7 161 12-176 1-164 (168)
166 cd04123 Rab21 Rab21 subfamily. 99.9 5.7E-22 1.2E-26 183.9 19.9 159 424-588 1-161 (162)
167 cd04116 Rab9 Rab9 subfamily. 99.9 1.7E-22 3.6E-27 189.3 16.3 159 11-174 4-169 (170)
168 cd04135 Tc10 TC10 subfamily. 99.9 2.7E-22 5.8E-27 188.7 17.5 158 424-588 1-173 (174)
169 KOG0091 GTPase Rab39, small G 99.9 1.6E-22 3.5E-27 173.9 14.3 161 11-176 7-173 (213)
170 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.8E-22 6E-27 188.3 17.5 156 424-586 1-171 (173)
171 cd04111 Rab39 Rab39 subfamily. 99.9 2.6E-22 5.7E-27 194.1 17.6 160 12-176 2-166 (211)
172 cd04146 RERG_RasL11_like RERG/ 99.9 1.8E-22 3.9E-27 188.1 15.6 157 14-175 1-163 (165)
173 cd04148 RGK RGK subfamily. Th 99.9 5.3E-22 1.1E-26 193.3 19.4 157 13-176 1-163 (221)
174 PLN03118 Rab family protein; P 99.9 4.4E-22 9.5E-27 193.1 18.8 166 7-177 9-178 (211)
175 cd04118 Rab24 Rab24 subfamily. 99.9 3.3E-22 7.2E-27 191.4 17.7 162 13-177 1-167 (193)
176 cd01860 Rab5_related Rab5-rela 99.9 3.8E-22 8.1E-27 185.5 17.2 159 12-175 1-162 (163)
177 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.2E-22 9.2E-27 186.5 16.4 159 12-175 2-168 (170)
178 cd01861 Rab6 Rab6 subfamily. 99.9 6.4E-22 1.4E-26 183.5 17.0 157 13-174 1-160 (161)
179 smart00175 RAB Rab subfamily o 99.9 6.1E-22 1.3E-26 184.2 16.9 159 13-176 1-162 (164)
180 cd04146 RERG_RasL11_like RERG/ 99.9 6.3E-22 1.4E-26 184.4 16.9 159 425-589 1-164 (165)
181 KOG0097 GTPase Rab14, small G 99.9 5E-22 1.1E-26 166.3 14.2 162 421-588 9-172 (215)
182 cd04129 Rho2 Rho2 subfamily. 99.9 8.6E-22 1.9E-26 187.3 17.9 164 13-178 2-175 (187)
183 PLN00223 ADP-ribosylation fact 99.9 9.7E-22 2.1E-26 185.5 17.3 157 10-176 15-178 (181)
184 cd04139 RalA_RalB RalA/RalB su 99.9 2.6E-21 5.6E-26 179.9 20.0 160 424-589 1-162 (164)
185 cd00157 Rho Rho (Ras homology) 99.9 6.6E-22 1.4E-26 185.3 16.0 160 13-173 1-170 (171)
186 cd01870 RhoA_like RhoA-like su 99.9 1.6E-21 3.4E-26 183.6 18.5 158 424-588 2-174 (175)
187 cd01862 Rab7 Rab7 subfamily. 99.9 1.1E-21 2.3E-26 184.1 17.2 161 13-177 1-168 (172)
188 smart00177 ARF ARF-like small 99.9 9E-22 1.9E-26 185.0 16.6 156 10-175 11-173 (175)
189 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.4E-22 1.6E-26 182.5 15.6 155 13-173 1-158 (159)
190 cd04139 RalA_RalB RalA/RalB su 99.9 1.5E-21 3.2E-26 181.5 17.5 159 13-176 1-162 (164)
191 PLN03108 Rab family protein; P 99.9 1.8E-21 3.9E-26 188.3 18.5 162 11-177 5-169 (210)
192 cd04123 Rab21 Rab21 subfamily. 99.9 1.7E-21 3.7E-26 180.7 17.2 158 13-175 1-161 (162)
193 cd04158 ARD1 ARD1 subfamily. 99.9 1.5E-21 3.3E-26 182.4 16.7 156 14-177 1-162 (169)
194 cd04114 Rab30 Rab30 subfamily. 99.9 5.1E-21 1.1E-25 179.0 20.2 161 422-588 6-168 (169)
195 cd04149 Arf6 Arf6 subfamily. 99.9 2E-21 4.3E-26 181.3 17.2 154 422-586 8-167 (168)
196 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.7E-21 3.6E-26 180.2 16.5 153 424-586 1-158 (159)
197 COG1159 Era GTPase [General fu 99.9 2.1E-21 4.5E-26 187.1 17.4 185 424-616 7-201 (298)
198 KOG0395 Ras-related GTPase [Ge 99.9 2.2E-21 4.8E-26 183.2 17.0 166 423-594 3-170 (196)
199 cd00154 Rab Rab family. Rab G 99.9 4.2E-21 9.1E-26 177.1 18.6 156 424-585 1-158 (159)
200 PTZ00133 ADP-ribosylation fact 99.9 1.7E-21 3.6E-26 184.1 16.2 161 10-176 15-178 (182)
201 cd01863 Rab18 Rab18 subfamily. 99.9 2.7E-21 5.7E-26 179.4 17.2 156 13-174 1-160 (161)
202 smart00177 ARF ARF-like small 99.9 3.9E-21 8.4E-26 180.7 18.4 155 422-589 12-174 (175)
203 cd04147 Ras_dva Ras-dva subfam 99.9 4.3E-21 9.3E-26 184.2 19.1 162 425-592 1-166 (198)
204 PLN00223 ADP-ribosylation fact 99.9 3.7E-21 8.1E-26 181.5 18.0 155 422-589 16-178 (181)
205 cd01893 Miro1 Miro1 subfamily. 99.9 5.9E-21 1.3E-25 178.0 18.7 159 424-590 1-165 (166)
206 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.4E-21 3.1E-26 181.6 14.4 153 15-172 2-162 (164)
207 cd04137 RheB Rheb (Ras Homolog 99.9 1E-20 2.2E-25 179.0 19.8 163 424-592 2-166 (180)
208 cd04129 Rho2 Rho2 subfamily. 99.9 9.3E-21 2E-25 180.2 19.1 164 424-594 2-178 (187)
209 cd04114 Rab30 Rab30 subfamily. 99.9 6.5E-21 1.4E-25 178.3 17.7 161 10-175 5-168 (169)
210 PTZ00133 ADP-ribosylation fact 99.9 9.2E-21 2E-25 179.1 18.3 155 422-589 16-178 (182)
211 cd00876 Ras Ras family. The R 99.9 1.3E-20 2.7E-25 174.4 18.9 157 425-587 1-159 (160)
212 cd00157 Rho Rho (Ras homology) 99.9 6.8E-21 1.5E-25 178.5 17.3 156 424-586 1-170 (171)
213 TIGR00436 era GTP-binding prot 99.9 1.1E-20 2.4E-25 189.9 19.7 180 425-615 2-192 (270)
214 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.8E-21 6E-26 179.6 13.8 151 425-586 1-163 (164)
215 cd04154 Arl2 Arl2 subfamily. 99.9 5.5E-21 1.2E-25 179.5 15.7 157 9-173 11-172 (173)
216 cd04158 ARD1 ARD1 subfamily. 99.9 9.1E-21 2E-25 177.2 17.1 155 425-589 1-161 (169)
217 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.9E-20 4.2E-25 177.3 19.3 161 423-589 3-170 (183)
218 KOG0395 Ras-related GTPase [Ge 99.9 4.5E-21 9.8E-26 181.1 14.8 162 11-177 2-166 (196)
219 cd04147 Ras_dva Ras-dva subfam 99.9 8.3E-21 1.8E-25 182.2 16.7 161 14-177 1-164 (198)
220 cd04137 RheB Rheb (Ras Homolog 99.9 9.8E-21 2.1E-25 179.1 16.9 161 13-177 2-164 (180)
221 cd04154 Arl2 Arl2 subfamily. 99.9 1.1E-20 2.3E-25 177.6 17.0 156 420-586 11-172 (173)
222 cd04151 Arl1 Arl1 subfamily. 99.9 6.2E-21 1.3E-25 176.3 15.2 154 14-173 1-157 (158)
223 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.5E-21 1.4E-25 180.5 15.6 160 12-176 3-170 (183)
224 cd04157 Arl6 Arl6 subfamily. 99.9 4.9E-21 1.1E-25 177.7 14.3 154 14-173 1-161 (162)
225 PTZ00132 GTP-binding nuclear p 99.9 5.5E-20 1.2E-24 179.0 22.4 162 420-589 6-168 (215)
226 PTZ00132 GTP-binding nuclear p 99.9 4.8E-20 1.1E-24 179.4 21.2 167 6-179 3-171 (215)
227 KOG0081 GTPase Rab27, small G 99.9 8.6E-22 1.9E-26 168.4 7.6 162 423-589 9-181 (219)
228 cd00154 Rab Rab family. Rab G 99.9 9.8E-21 2.1E-25 174.6 15.5 155 13-172 1-158 (159)
229 cd00876 Ras Ras family. The R 99.9 1.1E-20 2.5E-25 174.7 15.9 156 14-174 1-159 (160)
230 cd04157 Arl6 Arl6 subfamily. 99.9 2.2E-20 4.9E-25 173.3 17.4 155 425-586 1-161 (162)
231 KOG4252 GTP-binding protein [S 99.9 5.7E-22 1.2E-26 173.0 5.8 160 422-588 19-180 (246)
232 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.4E-20 3.1E-25 176.7 15.8 158 10-173 13-173 (174)
233 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.3E-20 4.9E-25 175.4 16.8 154 423-586 15-173 (174)
234 KOG0097 GTPase Rab14, small G 99.8 8.7E-21 1.9E-25 158.9 11.6 161 12-177 11-174 (215)
235 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.8E-20 3.9E-25 173.6 14.6 154 14-173 1-159 (160)
236 KOG0083 GTPase Rab26/Rab37, sm 99.8 5.9E-22 1.3E-26 164.3 4.1 156 16-176 1-160 (192)
237 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.6E-20 3.5E-25 175.1 13.7 156 14-173 1-166 (167)
238 KOG0393 Ras-related small GTPa 99.8 8.4E-21 1.8E-25 174.4 11.4 163 423-592 4-182 (198)
239 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.7E-20 8.1E-25 171.4 15.8 153 425-586 1-159 (160)
240 COG0486 ThdF Predicted GTPase 99.8 5E-20 1.1E-24 188.1 17.9 204 7-225 212-430 (454)
241 KOG0081 GTPase Rab27, small G 99.8 1.3E-21 2.9E-26 167.2 5.1 160 12-176 9-181 (219)
242 COG0486 ThdF Predicted GTPase 99.8 5.2E-20 1.1E-24 187.9 17.1 192 415-623 209-408 (454)
243 cd00879 Sar1 Sar1 subfamily. 99.8 4.4E-20 9.6E-25 176.2 15.4 158 9-174 16-189 (190)
244 cd04102 RabL3 RabL3 (Rab-like3 99.8 1E-19 2.2E-24 173.3 17.7 149 424-575 1-175 (202)
245 smart00178 SAR Sar1p-like memb 99.8 4.7E-20 1E-24 174.7 15.3 159 10-174 15-183 (184)
246 PF02421 FeoB_N: Ferrous iron 99.8 2.9E-20 6.2E-25 167.1 12.8 147 424-584 1-156 (156)
247 cd04151 Arl1 Arl1 subfamily. 99.8 1.5E-19 3.2E-24 167.1 17.7 149 425-586 1-157 (158)
248 smart00178 SAR Sar1p-like memb 99.8 1.6E-19 3.5E-24 171.0 18.2 153 422-587 16-183 (184)
249 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-19 2.3E-24 168.0 16.1 153 14-173 1-157 (158)
250 PF02421 FeoB_N: Ferrous iron 99.8 2.5E-20 5.4E-25 167.5 11.1 147 13-171 1-156 (156)
251 cd04102 RabL3 RabL3 (Rab-like3 99.8 7.7E-20 1.7E-24 174.2 15.0 148 13-164 1-178 (202)
252 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.9E-20 1.3E-24 171.4 14.0 153 14-173 1-166 (167)
253 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.2E-20 1.8E-24 170.3 14.6 153 425-586 1-166 (167)
254 cd00879 Sar1 Sar1 subfamily. 99.8 2.2E-19 4.7E-24 171.4 17.7 156 422-587 18-189 (190)
255 PRK15494 era GTPase Era; Provi 99.8 3.4E-19 7.4E-24 183.9 20.4 182 421-615 50-244 (339)
256 COG1159 Era GTPase [General fu 99.8 2E-19 4.3E-24 173.4 17.1 180 11-199 5-194 (298)
257 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.7E-19 5.9E-24 165.3 17.3 153 425-586 1-157 (158)
258 PRK15494 era GTPase Era; Provi 99.8 2E-19 4.4E-24 185.6 17.7 173 10-193 50-232 (339)
259 KOG4252 GTP-binding protein [S 99.8 7.8E-21 1.7E-25 166.0 6.0 164 8-176 16-181 (246)
260 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2E-19 4.4E-24 167.8 15.8 153 425-586 1-166 (167)
261 TIGR00436 era GTP-binding prot 99.8 4.3E-19 9.3E-24 178.4 19.2 167 14-191 2-178 (270)
262 cd01897 NOG NOG1 is a nucleola 99.8 3E-19 6.4E-24 166.9 16.2 154 14-175 2-167 (168)
263 TIGR02528 EutP ethanolamine ut 99.8 1.1E-19 2.4E-24 164.7 12.8 134 425-585 2-141 (142)
264 cd04159 Arl10_like Arl10-like 99.8 3E-19 6.5E-24 164.7 15.1 154 15-173 2-158 (159)
265 cd04159 Arl10_like Arl10-like 99.8 7.4E-19 1.6E-23 162.1 17.5 153 426-586 2-158 (159)
266 TIGR03156 GTP_HflX GTP-binding 99.8 5.8E-19 1.2E-23 182.3 18.5 157 421-587 187-350 (351)
267 cd01898 Obg Obg subfamily. Th 99.8 6.3E-19 1.4E-23 165.0 17.1 161 425-587 2-169 (170)
268 cd01890 LepA LepA subfamily. 99.8 7E-19 1.5E-23 166.2 17.5 155 425-589 2-177 (179)
269 PLN00023 GTP-binding protein; 99.8 8E-19 1.7E-23 174.5 18.0 147 417-565 15-190 (334)
270 cd01890 LepA LepA subfamily. 99.8 4.7E-19 1E-23 167.4 15.7 155 14-176 2-177 (179)
271 cd01878 HflX HflX subfamily. 99.8 5.7E-19 1.2E-23 170.5 16.4 159 420-587 38-203 (204)
272 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.6E-19 2.1E-23 185.9 19.3 186 420-621 200-394 (442)
273 cd01898 Obg Obg subfamily. Th 99.8 6.9E-19 1.5E-23 164.7 15.7 155 14-174 2-169 (170)
274 COG1160 Predicted GTPases [Gen 99.8 6.7E-19 1.5E-23 179.3 16.6 152 424-589 4-165 (444)
275 cd04171 SelB SelB subfamily. 99.8 4.7E-19 1E-23 164.7 14.1 157 13-172 1-162 (164)
276 PRK00089 era GTPase Era; Revie 99.8 2.1E-18 4.6E-23 175.9 20.0 182 424-615 6-199 (292)
277 PRK09518 bifunctional cytidyla 99.8 2.3E-17 4.9E-22 187.0 30.1 155 423-590 275-437 (712)
278 cd04155 Arl3 Arl3 subfamily. 99.8 1.9E-18 4.2E-23 162.2 17.9 152 422-586 13-172 (173)
279 cd04155 Arl3 Arl3 subfamily. 99.8 1.1E-18 2.3E-23 164.0 15.4 155 9-173 11-172 (173)
280 PRK05291 trmE tRNA modificatio 99.8 1.1E-18 2.4E-23 186.7 17.4 196 9-223 212-423 (449)
281 cd01897 NOG NOG1 is a nucleola 99.8 2.6E-18 5.5E-23 160.5 17.8 156 425-588 2-167 (168)
282 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1E-18 2.2E-23 163.1 15.0 156 14-174 2-164 (168)
283 PRK12298 obgE GTPase CgtA; Rev 99.8 3.5E-18 7.6E-23 178.4 20.4 191 423-615 159-361 (390)
284 cd04171 SelB SelB subfamily. 99.8 2.5E-18 5.3E-23 159.8 17.2 153 425-586 2-163 (164)
285 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.4E-18 3E-23 184.7 17.1 199 9-224 200-417 (442)
286 PRK12299 obgE GTPase CgtA; Rev 99.8 3.3E-18 7.1E-23 175.1 18.9 164 423-589 158-328 (335)
287 PRK12299 obgE GTPase CgtA; Rev 99.8 2E-18 4.3E-23 176.7 17.0 158 13-176 159-328 (335)
288 PRK05291 trmE tRNA modificatio 99.8 2E-18 4.3E-23 184.8 17.7 182 420-621 212-401 (449)
289 PF00025 Arf: ADP-ribosylation 99.8 1E-18 2.2E-23 163.8 13.0 161 9-175 11-175 (175)
290 TIGR02729 Obg_CgtA Obg family 99.8 7.1E-18 1.5E-22 172.7 18.6 164 422-588 156-328 (329)
291 PRK11058 GTPase HflX; Provisio 99.8 5.4E-18 1.2E-22 179.0 18.1 159 423-589 197-362 (426)
292 PLN00023 GTP-binding protein; 99.8 3.1E-18 6.8E-23 170.3 14.8 140 8-148 17-188 (334)
293 TIGR03156 GTP_HflX GTP-binding 99.8 3.8E-18 8.3E-23 176.2 15.4 152 11-174 188-350 (351)
294 PF00025 Arf: ADP-ribosylation 99.8 1.1E-17 2.3E-22 156.9 17.1 158 421-588 12-175 (175)
295 TIGR02528 EutP ethanolamine ut 99.8 1.8E-18 3.9E-23 156.7 11.3 135 14-172 2-141 (142)
296 TIGR00231 small_GTP small GTP- 99.8 8.8E-18 1.9E-22 154.6 15.8 155 12-171 1-159 (161)
297 KOG0073 GTP-binding ADP-ribosy 99.8 1.7E-17 3.7E-22 143.8 16.1 160 421-590 14-179 (185)
298 cd01879 FeoB Ferrous iron tran 99.8 1.3E-17 2.8E-22 154.0 16.2 149 428-588 1-156 (158)
299 COG1100 GTPase SAR1 and relate 99.8 8.2E-18 1.8E-22 164.4 15.5 166 11-177 4-186 (219)
300 cd01878 HflX HflX subfamily. 99.8 6E-18 1.3E-22 163.4 14.4 154 10-174 39-203 (204)
301 PRK00089 era GTPase Era; Revie 99.8 1.5E-17 3.3E-22 169.6 18.0 169 12-189 5-183 (292)
302 cd00881 GTP_translation_factor 99.8 8.4E-18 1.8E-22 160.2 14.9 159 14-176 1-187 (189)
303 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.5E-17 5.4E-22 153.8 17.6 156 425-589 2-166 (168)
304 KOG1423 Ras-like GTPase ERA [C 99.8 2.1E-17 4.6E-22 157.7 17.0 189 418-613 67-297 (379)
305 PRK12298 obgE GTPase CgtA; Rev 99.8 2.2E-17 4.7E-22 172.5 18.4 170 14-189 161-345 (390)
306 PTZ00099 rab6; Provisional 99.8 3.2E-17 7E-22 153.4 17.8 139 446-590 3-143 (176)
307 cd01879 FeoB Ferrous iron tran 99.8 1.4E-17 3E-22 153.8 14.8 146 17-174 1-155 (158)
308 PRK03003 GTP-binding protein D 99.8 1.8E-17 4E-22 179.4 17.7 156 422-590 37-200 (472)
309 cd01891 TypA_BipA TypA (tyrosi 99.8 2E-17 4.4E-22 158.2 15.9 149 14-167 4-173 (194)
310 TIGR00231 small_GTP small GTP- 99.8 4.2E-17 9E-22 150.1 17.5 156 424-585 2-160 (161)
311 cd01895 EngA2 EngA2 subfamily. 99.8 3.5E-17 7.7E-22 153.3 17.1 157 12-174 2-173 (174)
312 TIGR02729 Obg_CgtA Obg family 99.7 2.2E-17 4.7E-22 169.1 16.5 156 13-175 158-328 (329)
313 PRK04213 GTP-binding protein; 99.7 8.8E-18 1.9E-22 161.8 12.8 154 10-176 7-192 (201)
314 cd01894 EngA1 EngA1 subfamily. 99.7 1.7E-17 3.7E-22 152.8 13.2 146 16-174 1-156 (157)
315 PRK15467 ethanolamine utilizat 99.7 1.7E-17 3.6E-22 152.8 12.8 141 14-176 3-147 (158)
316 PRK12296 obgE GTPase CgtA; Rev 99.7 6.6E-17 1.4E-21 171.3 18.2 168 422-592 158-343 (500)
317 cd00881 GTP_translation_factor 99.7 8.7E-17 1.9E-21 153.1 17.1 156 425-589 1-187 (189)
318 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.3E-17 1.4E-21 149.0 15.5 145 12-174 1-155 (157)
319 cd01894 EngA1 EngA1 subfamily. 99.7 5E-17 1.1E-21 149.7 14.7 147 427-587 1-156 (157)
320 PRK15467 ethanolamine utilizat 99.7 4.5E-17 9.8E-22 149.9 14.1 138 425-589 3-147 (158)
321 cd01891 TypA_BipA TypA (tyrosi 99.7 7.4E-17 1.6E-21 154.3 15.6 146 425-580 4-173 (194)
322 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-16 2.9E-21 149.4 17.0 156 423-587 2-173 (174)
323 PRK12297 obgE GTPase CgtA; Rev 99.7 7.7E-17 1.7E-21 169.0 16.8 154 14-177 160-328 (424)
324 COG1100 GTPase SAR1 and relate 99.7 2.3E-16 5.1E-21 154.1 19.2 161 424-589 6-185 (219)
325 cd01889 SelB_euk SelB subfamil 99.7 4.2E-17 9.1E-22 155.7 13.5 162 13-178 1-188 (192)
326 KOG0073 GTP-binding ADP-ribosy 99.7 1E-16 2.3E-21 138.9 14.5 163 10-177 14-179 (185)
327 TIGR03598 GTPase_YsxC ribosome 99.7 4E-17 8.7E-22 154.0 13.2 149 9-165 15-179 (179)
328 cd04163 Era Era subfamily. Er 99.7 8.1E-17 1.8E-21 149.7 14.8 157 11-174 2-167 (168)
329 PRK12297 obgE GTPase CgtA; Rev 99.7 2E-16 4.3E-21 165.9 19.2 162 423-590 158-328 (424)
330 PRK04213 GTP-binding protein; 99.7 8.5E-17 1.8E-21 154.9 15.2 152 422-589 8-192 (201)
331 KOG3883 Ras family small GTPas 99.7 3.5E-16 7.6E-21 133.5 16.9 168 422-595 8-181 (198)
332 cd04163 Era Era subfamily. Er 99.7 2.1E-16 4.6E-21 146.9 17.3 157 423-587 3-167 (168)
333 TIGR03594 GTPase_EngA ribosome 99.7 9.6E-17 2.1E-21 173.2 17.2 160 10-176 170-344 (429)
334 cd01889 SelB_euk SelB subfamil 99.7 1.1E-16 2.3E-21 152.9 15.6 159 424-591 1-188 (192)
335 PRK11058 GTPase HflX; Provisio 99.7 9.9E-17 2.1E-21 169.5 16.8 154 13-176 198-362 (426)
336 KOG0075 GTP-binding ADP-ribosy 99.7 1.8E-17 4E-22 140.4 8.7 156 10-174 18-180 (186)
337 cd04170 EF-G_bact Elongation f 99.7 1.5E-17 3.2E-22 167.2 9.5 228 14-249 1-268 (268)
338 PF08477 Miro: Miro-like prote 99.7 3E-17 6.6E-22 143.8 10.2 113 14-126 1-119 (119)
339 cd01881 Obg_like The Obg-like 99.7 9.8E-17 2.1E-21 150.9 14.2 158 428-587 1-175 (176)
340 KOG0075 GTP-binding ADP-ribosy 99.7 5E-17 1.1E-21 137.7 10.7 157 421-589 18-182 (186)
341 cd01881 Obg_like The Obg-like 99.7 7.6E-17 1.6E-21 151.7 13.2 152 17-174 1-175 (176)
342 PF08477 Miro: Miro-like prote 99.7 1.7E-16 3.6E-21 139.1 14.1 114 425-544 1-119 (119)
343 PTZ00099 rab6; Provisional 99.7 1.4E-16 3.1E-21 149.0 14.4 139 36-179 4-145 (176)
344 cd04168 TetM_like Tet(M)-like 99.7 9.7E-17 2.1E-21 157.2 13.9 204 14-249 1-237 (237)
345 PRK00454 engB GTP-binding prot 99.7 1.9E-16 4E-21 151.9 15.2 160 9-175 21-193 (196)
346 TIGR03598 GTPase_YsxC ribosome 99.7 3E-16 6.6E-21 148.0 15.9 148 419-578 14-179 (179)
347 PRK00093 GTP-binding protein D 99.7 3.4E-16 7.5E-21 169.0 18.2 151 424-587 2-160 (435)
348 cd01886 EF-G Elongation factor 99.7 7.6E-17 1.6E-21 160.7 12.0 225 14-249 1-270 (270)
349 COG2262 HflX GTPases [General 99.7 5E-16 1.1E-20 156.0 17.0 166 415-589 184-356 (411)
350 cd00882 Ras_like_GTPase Ras-li 99.7 7.6E-16 1.6E-20 140.3 17.0 153 428-585 1-156 (157)
351 PRK00454 engB GTP-binding prot 99.7 1.1E-15 2.3E-20 146.7 18.5 158 420-589 21-194 (196)
352 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.9E-16 1.3E-20 142.5 16.1 147 424-588 2-156 (157)
353 KOG1191 Mitochondrial GTPase [ 99.7 2.7E-16 5.9E-21 159.9 14.6 228 8-241 264-522 (531)
354 PRK12296 obgE GTPase CgtA; Rev 99.7 3.1E-16 6.7E-21 166.3 15.3 159 12-177 159-341 (500)
355 KOG0070 GTP-binding ADP-ribosy 99.7 2.1E-16 4.6E-21 141.4 11.7 162 9-176 14-178 (181)
356 PRK09554 feoB ferrous iron tra 99.7 6.3E-16 1.4E-20 174.1 18.0 153 11-175 2-167 (772)
357 cd00882 Ras_like_GTPase Ras-li 99.7 4.5E-16 9.7E-21 141.9 13.8 153 17-172 1-156 (157)
358 KOG1191 Mitochondrial GTPase [ 99.7 2.2E-16 4.8E-21 160.5 12.6 194 420-616 265-477 (531)
359 TIGR00487 IF-2 translation ini 99.7 1.4E-15 3E-20 166.5 19.7 156 420-587 84-248 (587)
360 PF00009 GTP_EFTU: Elongation 99.7 3.8E-16 8.2E-21 148.5 13.0 157 11-176 2-187 (188)
361 TIGR00487 IF-2 translation ini 99.7 6.3E-16 1.4E-20 169.2 16.5 156 9-173 84-247 (587)
362 TIGR01393 lepA GTP-binding pro 99.7 1.6E-15 3.5E-20 167.0 19.1 159 424-592 4-183 (595)
363 PF00009 GTP_EFTU: Elongation 99.7 8.9E-16 1.9E-20 145.9 14.8 158 422-589 2-187 (188)
364 cd04169 RF3 RF3 subfamily. Pe 99.7 2.3E-16 5.1E-21 157.1 11.1 226 14-249 4-267 (267)
365 COG0370 FeoB Fe2+ transport sy 99.7 7.7E-16 1.7E-20 164.2 14.7 157 11-179 2-167 (653)
366 CHL00189 infB translation init 99.7 7.6E-16 1.7E-20 170.6 15.2 158 9-174 241-408 (742)
367 TIGR01393 lepA GTP-binding pro 99.7 1.4E-15 3.1E-20 167.4 17.2 158 14-179 5-183 (595)
368 PRK05306 infB translation init 99.7 1.1E-15 2.4E-20 171.0 16.4 159 9-173 287-449 (787)
369 cd01888 eIF2_gamma eIF2-gamma 99.7 1.2E-15 2.6E-20 146.7 14.3 164 13-178 1-201 (203)
370 PF10662 PduV-EutP: Ethanolami 99.6 1.4E-15 3.1E-20 133.3 12.0 139 425-585 3-142 (143)
371 cd04105 SR_beta Signal recogni 99.6 3.1E-15 6.7E-20 143.6 15.0 117 14-130 2-124 (203)
372 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 5.5E-16 1.2E-20 137.8 8.9 162 10-178 8-171 (216)
373 TIGR00475 selB selenocysteine- 99.6 5.2E-15 1.1E-19 163.0 18.7 156 424-590 1-167 (581)
374 KOG1423 Ras-like GTPase ERA [C 99.6 3.1E-15 6.8E-20 143.1 14.6 172 9-184 69-278 (379)
375 TIGR00475 selB selenocysteine- 99.6 1.5E-15 3.3E-20 167.2 14.4 159 13-176 1-166 (581)
376 KOG0070 GTP-binding ADP-ribosy 99.6 2.5E-15 5.4E-20 134.6 12.8 160 421-590 15-179 (181)
377 PRK09554 feoB ferrous iron tra 99.6 4.7E-15 1E-19 167.1 18.3 155 423-589 3-168 (772)
378 COG0218 Predicted GTPase [Gene 99.6 1.8E-14 3.8E-19 132.0 18.2 157 420-589 21-197 (200)
379 TIGR00437 feoB ferrous iron tr 99.6 2.2E-15 4.8E-20 166.1 14.8 147 430-588 1-154 (591)
380 cd01888 eIF2_gamma eIF2-gamma 99.6 7.4E-15 1.6E-19 141.2 16.7 161 424-591 1-201 (203)
381 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 6.4E-16 1.4E-20 137.3 8.4 160 422-589 9-169 (216)
382 cd01896 DRG The developmentall 99.6 5.2E-15 1.1E-19 144.9 15.6 150 14-175 2-225 (233)
383 CHL00189 infB translation init 99.6 7.9E-15 1.7E-19 162.6 18.5 159 420-588 241-409 (742)
384 cd00880 Era_like Era (E. coli 99.6 3.9E-15 8.5E-20 137.0 13.6 152 17-174 1-162 (163)
385 cd04166 CysN_ATPS CysN_ATPS su 99.6 2E-15 4.4E-20 145.7 12.1 151 14-167 1-185 (208)
386 TIGR00491 aIF-2 translation in 99.6 3.7E-15 8E-20 162.8 15.5 156 14-173 6-213 (590)
387 KOG1673 Ras GTPases [General f 99.6 3.8E-15 8.2E-20 127.5 12.0 171 422-599 19-196 (205)
388 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.6E-14 3.4E-19 137.2 17.1 146 423-577 2-171 (195)
389 cd01884 EF_Tu EF-Tu subfamily. 99.6 6.2E-15 1.3E-19 140.0 14.2 151 11-165 1-172 (195)
390 TIGR00437 feoB ferrous iron tr 99.6 2.9E-15 6.2E-20 165.2 13.5 145 19-175 1-154 (591)
391 PRK05306 infB translation init 99.6 1.9E-14 4.2E-19 161.1 19.0 158 420-588 287-451 (787)
392 cd00880 Era_like Era (E. coli 99.6 1.6E-14 3.4E-19 133.0 14.9 152 428-587 1-162 (163)
393 PRK12317 elongation factor 1-a 99.6 4.7E-15 1E-19 159.0 13.0 159 9-168 3-197 (425)
394 cd01876 YihA_EngB The YihA (En 99.6 1.4E-14 3E-19 135.0 14.6 156 14-174 1-169 (170)
395 COG0218 Predicted GTPase [Gene 99.6 2.3E-14 5.1E-19 131.2 15.2 158 11-176 23-197 (200)
396 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.1E-14 2.4E-19 140.6 13.7 145 425-580 1-185 (208)
397 COG0370 FeoB Fe2+ transport sy 99.6 3.2E-14 6.9E-19 152.0 18.2 152 424-589 4-164 (653)
398 KOG1673 Ras GTPases [General f 99.6 3.1E-15 6.7E-20 128.1 8.1 163 11-176 19-186 (205)
399 TIGR00491 aIF-2 translation in 99.6 2.4E-14 5.2E-19 156.5 16.5 156 424-588 5-215 (590)
400 KOG0076 GTP-binding ADP-ribosy 99.6 1E-14 2.3E-19 127.9 10.8 165 420-591 14-189 (197)
401 KOG3883 Ras family small GTPas 99.6 7.8E-14 1.7E-18 119.3 15.8 167 9-180 6-179 (198)
402 TIGR00157 ribosome small subun 99.6 2E-14 4.3E-19 141.5 14.1 92 70-169 24-116 (245)
403 PRK05433 GTP-binding protein L 99.6 3.3E-14 7.2E-19 156.8 17.1 158 14-179 9-187 (600)
404 KOG0076 GTP-binding ADP-ribosy 99.6 3.9E-15 8.5E-20 130.5 7.3 167 9-178 14-189 (197)
405 KOG1707 Predicted Ras related/ 99.6 1.2E-14 2.7E-19 150.6 12.3 190 421-615 7-201 (625)
406 TIGR00484 EF-G translation elo 99.6 1.1E-14 2.4E-19 164.9 12.6 230 13-252 11-284 (689)
407 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.5E-14 7.5E-19 137.8 14.4 152 14-172 1-219 (224)
408 cd01876 YihA_EngB The YihA (En 99.6 1E-13 2.2E-18 129.0 17.1 151 425-587 1-169 (170)
409 PRK05433 GTP-binding protein L 99.6 6.3E-14 1.4E-18 154.7 18.1 159 424-592 8-187 (600)
410 KOG0071 GTP-binding ADP-ribosy 99.6 4.1E-14 8.9E-19 119.2 12.6 160 10-175 15-177 (180)
411 KOG4423 GTP-binding protein-li 99.6 1.9E-16 4E-21 140.0 -1.5 167 421-589 23-194 (229)
412 cd01896 DRG The developmentall 99.6 9.6E-14 2.1E-18 135.9 17.5 155 425-589 2-226 (233)
413 cd04105 SR_beta Signal recogni 99.6 5E-14 1.1E-18 135.2 14.8 121 425-548 2-124 (203)
414 PRK10218 GTP-binding protein; 99.6 6.2E-14 1.3E-18 153.8 16.8 159 13-179 6-198 (607)
415 PRK00007 elongation factor G; 99.5 1.2E-14 2.6E-19 164.2 10.8 232 13-252 11-285 (693)
416 cd04167 Snu114p Snu114p subfam 99.5 4.3E-14 9.2E-19 137.2 13.0 111 14-128 2-136 (213)
417 TIGR01394 TypA_BipA GTP-bindin 99.5 5.5E-14 1.2E-18 154.5 15.4 161 14-179 3-194 (594)
418 PRK10512 selenocysteinyl-tRNA- 99.5 1.3E-13 2.9E-18 152.3 18.4 155 425-589 2-166 (614)
419 cd04104 p47_IIGP_like p47 (47- 99.5 9.8E-14 2.1E-18 132.8 14.9 160 12-177 1-185 (197)
420 TIGR00483 EF-1_alpha translati 99.5 3.4E-14 7.3E-19 152.4 12.7 160 9-169 4-200 (426)
421 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.2E-13 2.7E-18 134.0 15.2 151 425-586 1-220 (224)
422 KOG1489 Predicted GTP-binding 99.5 9E-14 1.9E-18 134.1 13.9 160 423-586 196-364 (366)
423 PRK10512 selenocysteinyl-tRNA- 99.5 8.5E-14 1.8E-18 153.8 15.3 156 13-175 1-165 (614)
424 TIGR03680 eif2g_arch translati 99.5 5.8E-14 1.2E-18 149.1 13.5 165 10-176 2-196 (406)
425 cd01858 NGP_1 NGP-1. Autoanti 99.5 3.5E-13 7.6E-18 124.1 16.5 87 78-171 4-90 (157)
426 KOG0071 GTP-binding ADP-ribosy 99.5 2.3E-13 4.9E-18 114.7 13.6 155 422-589 16-178 (180)
427 PRK04004 translation initiatio 99.5 1.7E-13 3.8E-18 150.6 16.9 155 12-173 6-215 (586)
428 cd01883 EF1_alpha Eukaryotic e 99.5 4.4E-14 9.5E-19 137.5 10.8 149 14-165 1-194 (219)
429 PRK12317 elongation factor 1-a 99.5 1.1E-13 2.3E-18 148.6 14.8 151 420-581 3-197 (425)
430 PRK04000 translation initiatio 99.5 1.2E-13 2.5E-18 146.6 14.8 164 7-176 4-201 (411)
431 PF08355 EF_assoc_1: EF hand a 99.5 9.9E-15 2.2E-19 112.6 4.5 70 349-418 1-75 (76)
432 COG2262 HflX GTPases [General 99.5 2.3E-13 5E-18 136.9 15.3 155 11-176 191-356 (411)
433 KOG0074 GTP-binding ADP-ribosy 99.5 1.5E-13 3.1E-18 116.0 11.0 163 7-174 12-177 (185)
434 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.6E-13 7.8E-18 128.9 15.0 169 13-184 1-192 (196)
435 PRK12736 elongation factor Tu; 99.5 2.2E-13 4.8E-18 144.1 14.8 165 8-176 8-201 (394)
436 cd04168 TetM_like Tet(M)-like 99.5 4.4E-13 9.6E-18 131.4 15.8 114 425-547 1-130 (237)
437 KOG1489 Predicted GTP-binding 99.5 2.3E-13 5E-18 131.3 12.9 154 13-173 197-364 (366)
438 PRK00741 prfC peptide chain re 99.5 8.8E-14 1.9E-18 150.9 11.3 130 11-148 9-160 (526)
439 COG2229 Predicted GTPase [Gene 99.5 9E-13 1.9E-17 117.9 15.5 159 9-174 7-176 (187)
440 CHL00071 tufA elongation facto 99.5 8.8E-13 1.9E-17 140.2 18.5 147 420-577 9-181 (409)
441 PRK12736 elongation factor Tu; 99.5 8.8E-13 1.9E-17 139.5 18.2 161 420-589 9-201 (394)
442 PRK04004 translation initiatio 99.5 5.9E-13 1.3E-17 146.4 17.3 152 423-586 6-215 (586)
443 cd04167 Snu114p Snu114p subfam 99.5 4.1E-13 8.9E-18 130.3 14.2 145 425-578 2-192 (213)
444 cd01885 EF2 EF2 (for archaea a 99.5 7.7E-13 1.7E-17 127.8 15.9 111 14-128 2-138 (222)
445 PRK12735 elongation factor Tu; 99.5 8.8E-13 1.9E-17 139.6 17.9 161 420-589 9-203 (396)
446 PRK12735 elongation factor Tu; 99.5 3.3E-13 7.3E-18 142.8 14.6 152 8-163 8-180 (396)
447 PF10662 PduV-EutP: Ethanolami 99.5 2.2E-13 4.8E-18 119.6 10.9 136 14-172 3-142 (143)
448 COG1084 Predicted GTPase [Gene 99.5 1.4E-12 3E-17 127.3 17.2 163 420-590 165-337 (346)
449 COG1163 DRG Predicted GTPase [ 99.5 6.3E-13 1.4E-17 129.0 14.6 153 11-175 62-288 (365)
450 PF01926 MMR_HSR1: 50S ribosom 99.5 3.4E-13 7.3E-18 117.4 11.6 105 14-124 1-116 (116)
451 KOG0072 GTP-binding ADP-ribosy 99.5 1.8E-13 3.9E-18 115.9 9.1 160 11-176 17-179 (182)
452 CHL00071 tufA elongation facto 99.5 4.4E-13 9.5E-18 142.5 14.6 154 7-164 7-181 (409)
453 PRK10218 GTP-binding protein; 99.5 1.3E-12 2.7E-17 143.6 18.4 160 423-592 5-198 (607)
454 KOG4423 GTP-binding protein-li 99.5 4.5E-15 9.7E-20 131.3 -0.8 167 10-179 23-197 (229)
455 COG1084 Predicted GTPase [Gene 99.5 8.1E-13 1.8E-17 128.9 14.8 159 10-176 166-336 (346)
456 cd04104 p47_IIGP_like p47 (47- 99.5 9.9E-13 2.1E-17 125.8 15.3 156 423-589 1-184 (197)
457 PRK12739 elongation factor G; 99.5 2.1E-13 4.6E-18 154.3 12.4 232 12-252 8-283 (691)
458 TIGR03680 eif2g_arch translati 99.5 1.1E-12 2.4E-17 139.4 16.7 159 422-589 3-196 (406)
459 KOG0074 GTP-binding ADP-ribosy 99.5 4.1E-13 8.8E-18 113.4 10.3 156 421-588 15-178 (185)
460 COG3596 Predicted GTPase [Gene 99.5 5E-13 1.1E-17 127.3 12.1 167 8-178 35-224 (296)
461 TIGR00485 EF-Tu translation el 99.5 5.6E-13 1.2E-17 141.3 13.9 150 8-162 8-179 (394)
462 TIGR00483 EF-1_alpha translati 99.5 7.9E-13 1.7E-17 141.8 15.2 151 420-579 4-197 (426)
463 cd01859 MJ1464 MJ1464. This f 99.5 2.3E-12 5E-17 118.6 16.1 90 74-173 4-93 (156)
464 TIGR01394 TypA_BipA GTP-bindin 99.5 1.3E-12 2.8E-17 143.8 16.8 158 425-592 3-194 (594)
465 PRK13351 elongation factor G; 99.4 2.3E-13 5E-18 154.5 10.8 234 11-252 7-283 (687)
466 cd01899 Ygr210 Ygr210 subfamil 99.4 3.3E-12 7.2E-17 129.7 18.0 80 15-94 1-111 (318)
467 TIGR00503 prfC peptide chain r 99.4 8.2E-13 1.8E-17 143.5 14.4 131 10-148 9-161 (527)
468 COG0536 Obg Predicted GTPase [ 99.4 1.6E-12 3.4E-17 127.4 14.4 165 425-591 161-335 (369)
469 PRK12289 GTPase RsgA; Reviewed 99.4 1.8E-12 3.9E-17 133.2 15.2 86 75-169 82-168 (352)
470 cd01855 YqeH YqeH. YqeH is an 99.4 2.1E-12 4.5E-17 123.0 14.4 93 72-173 24-122 (190)
471 COG0536 Obg Predicted GTPase [ 99.4 1.4E-12 3.1E-17 127.7 13.1 160 14-177 161-334 (369)
472 cd01883 EF1_alpha Eukaryotic e 99.4 1.2E-12 2.5E-17 127.5 12.5 145 425-578 1-194 (219)
473 PRK04000 translation initiatio 99.4 3.4E-12 7.3E-17 135.5 17.0 161 421-590 7-202 (411)
474 TIGR00485 EF-Tu translation el 99.4 4E-12 8.7E-17 134.7 17.4 147 420-575 9-178 (394)
475 PRK00049 elongation factor Tu; 99.4 1.5E-12 3.3E-17 137.7 13.9 152 8-163 8-180 (396)
476 PRK05124 cysN sulfate adenylyl 99.4 2E-12 4.3E-17 139.3 14.7 156 8-167 23-216 (474)
477 PLN03126 Elongation factor Tu; 99.4 5.5E-12 1.2E-16 135.3 17.8 146 419-575 77-247 (478)
478 COG2229 Predicted GTPase [Gene 99.4 9.2E-12 2E-16 111.5 16.1 156 421-587 8-176 (187)
479 TIGR02034 CysN sulfate adenyly 99.4 1.5E-12 3.3E-17 138.2 13.3 151 13-167 1-188 (406)
480 PLN03127 Elongation factor Tu; 99.4 3.5E-12 7.6E-17 136.1 16.0 163 8-175 57-251 (447)
481 PF01926 MMR_HSR1: 50S ribosom 99.4 6E-12 1.3E-16 109.5 14.0 107 425-542 1-116 (116)
482 cd04169 RF3 RF3 subfamily. Pe 99.4 7.9E-12 1.7E-16 124.7 16.7 131 425-565 4-154 (267)
483 cd01885 EF2 EF2 (for archaea a 99.4 1.1E-11 2.3E-16 119.9 16.7 113 425-546 2-138 (222)
484 cd01899 Ygr210 Ygr210 subfamil 99.4 1.4E-11 3E-16 125.3 18.1 161 426-589 1-269 (318)
485 PRK00049 elongation factor Tu; 99.4 1.3E-11 2.9E-16 130.5 18.5 158 421-589 10-203 (396)
486 PLN03126 Elongation factor Tu; 99.4 3.4E-12 7.5E-17 136.8 14.0 153 8-164 77-250 (478)
487 PRK09866 hypothetical protein; 99.4 1.2E-11 2.6E-16 131.7 17.7 112 59-174 230-351 (741)
488 PRK05506 bifunctional sulfate 99.4 5.2E-12 1.1E-16 141.9 16.0 150 420-579 21-211 (632)
489 PLN03127 Elongation factor Tu; 99.4 1.6E-11 3.4E-16 131.1 18.8 159 420-589 58-252 (447)
490 PRK05506 bifunctional sulfate 99.4 3.1E-12 6.7E-17 143.7 13.7 155 8-166 20-211 (632)
491 PRK09602 translation-associate 99.4 2E-11 4.3E-16 128.0 18.4 81 13-93 2-113 (396)
492 cd01886 EF-G Elongation factor 99.4 2.3E-12 4.9E-17 128.7 10.6 145 425-581 1-168 (270)
493 PRK12288 GTPase RsgA; Reviewed 99.4 9.6E-12 2.1E-16 128.0 15.4 85 80-170 118-202 (347)
494 PRK09602 translation-associate 99.4 4.1E-11 8.8E-16 125.6 19.9 189 424-617 2-299 (396)
495 TIGR02034 CysN sulfate adenyly 99.4 9E-12 2E-16 132.3 15.2 146 424-579 1-187 (406)
496 PRK05124 cysN sulfate adenylyl 99.4 9.2E-12 2E-16 134.2 15.3 151 420-580 24-216 (474)
497 PRK09866 hypothetical protein; 99.3 1.4E-11 3.1E-16 131.1 15.6 108 472-586 230-350 (741)
498 PF09439 SRPRB: Signal recogni 99.3 4.8E-12 1E-16 116.5 10.1 116 14-131 5-128 (181)
499 PRK00741 prfC peptide chain re 99.3 3.3E-11 7.2E-16 130.9 18.1 116 423-547 10-145 (526)
500 PLN00043 elongation factor 1-a 99.3 6.2E-12 1.4E-16 134.3 12.2 155 8-166 3-203 (447)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=1.5e-95 Score=743.39 Aligned_cols=615 Identities=50% Similarity=0.828 Sum_probs=561.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
+...+..+||+|+|+.|||||||+-+|+...|+.+.|+......++.++..+.+...|+||+..++........+++||+
T Consensus 3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 45678889999999999999999999999999999999999999999999999999999999877766677788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
+++||+++++.+++.+..+|++.+++.+ .++||||||||+|+...... +.+..+..++.+|.+++.|++|||++..
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999987 78999999999999887665 5555689999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490 163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 242 (643)
++.++|+.++++++++..|+|+...++.++.|.++|.|+|.++|.++|+.|+++|++.+|.+||+.++...+++.++.++
T Consensus 162 n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 162 NVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV 241 (625)
T ss_pred hhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322 (643)
Q Consensus 243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f 322 (643)
++..|.|+...++|+.|||+|+.+|+++||+|++|++||+|||+|.|+|.++++|..+.++|++++|||+.|++||..+|
T Consensus 242 ~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f 321 (625)
T KOG1707|consen 242 QEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVF 321 (625)
T ss_pred HhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999944999999999999999999999999
Q ss_pred hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCC---
Q 006490 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD--- 399 (643)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~--- 399 (643)
++||.|+||.|++.|+..+|+++|+.||....++...+.+.+|++++++|+++|+|+|++++..++++|.|+||+..
T Consensus 322 ~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~~ 401 (625)
T KOG1707|consen 322 EKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDAGS 401 (625)
T ss_pred HhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEec
Q 006490 400 PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
+..+++++++|+.++++++..|+++++.++|+.|+|||.|++.++|+.+...+..++...+.++.+... +..+++++..
T Consensus 402 ~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~e 480 (625)
T KOG1707|consen 402 QASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILRE 480 (625)
T ss_pred cccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEee
Confidence 899999999999999899999999999999999999999999999999888555788888999999999 6788888888
Q ss_pred CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHH
Q 006490 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARV 558 (643)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~ 558 (643)
+|......+ .... ..||+++++||.+++.+|+.....+..-... . ..||++|+.|+|+.+..+. .....++
T Consensus 481 i~~~~~~~l--~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~----~~Pc~~va~K~dlDe~~Q~~~iqpde~ 552 (625)
T KOG1707|consen 481 IGEDDQDFL--TSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-Y----KIPCLMVATKADLDEVPQRYSIQPDEF 552 (625)
T ss_pred cCccccccc--cCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-c----CCceEEEeeccccchhhhccCCChHHH
Confidence 876433223 2222 8899999999999999999887765543332 1 8999999999999876544 3445999
Q ss_pred HHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006490 559 TQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAAVAVVGLAAYRAYAA 637 (643)
Q Consensus 559 ~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 637 (643)
++++++++.+.+|.++. . .++|..|...+..|+ +++.+..... ..++.+...+.| ++.+.|++.|+.++.
T Consensus 553 ~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph--~~~~~~~~~~-----~~~~~l~~~~~g-~~~~~g~~~~~~~~~ 623 (625)
T KOG1707|consen 553 CRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH--IPRIEEEKSS-----LQNRLLMAVSGG-AVAVAGLALYKLYKA 623 (625)
T ss_pred HHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC--ccccccccch-----hhHHHHHHHHHH-HHHHhhHHHHhhhhc
Confidence 99999999999999965 6 899999999999888 6666555333 577788788888 899999999999987
Q ss_pred Hh
Q 006490 638 RR 639 (643)
Q Consensus 638 ~~ 639 (643)
+|
T Consensus 624 ~k 625 (625)
T KOG1707|consen 624 RK 625 (625)
T ss_pred cC
Confidence 64
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=7.8e-46 Score=374.71 Aligned_cols=330 Identities=19% Similarity=0.176 Sum_probs=249.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHhhc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK 81 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~ 81 (643)
..|+|||+||||||||||||++.+ ++++.||++ +.+++....+.+..|.++||+|++... .+...++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 569999999999999999999998 677788844 334666777888889999999998432 23347899
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
+||++|||+|.....+.. +..+.+.+++. ++|+|||+||+|.... .....+.+...++ .++++||.||
T Consensus 83 eADvilfvVD~~~Git~~--D~~ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~Hg 150 (444)
T COG1160 83 EADVILFVVDGREGITPA--DEEIAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEHG 150 (444)
T ss_pred hCCEEEEEEeCCCCCCHH--HHHHHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhhc
Confidence 999999999966554444 44688888865 7999999999998742 2333455555555 5899999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~ 241 (643)
.|+.+|++.+...+. +...
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~------------------------------------------------------------ 169 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEE------------------------------------------------------------ 169 (444)
T ss_pred cCHHHHHHHHHhhcC-Cccc------------------------------------------------------------
Confidence 999999998776542 1000
Q ss_pred HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (643)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~ 321 (643)
.+
T Consensus 170 ------------------------------------------------------~~------------------------ 171 (444)
T COG1160 170 ------------------------------------------------------EE------------------------ 171 (444)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (643)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (643)
T Consensus 172 -------------------------------------------------------------------------------- 171 (444)
T COG1160 172 -------------------------------------------------------------------------------- 171 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEec
Q 006490 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
......++||+|+|+||||||||+|+|+++++.++++ + ||++ .....++.. .+++.++||
T Consensus 172 ---------------~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD-~I~~~~e~~--~~~~~liDT 233 (444)
T COG1160 172 ---------------EEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRD-SIDIEFERD--GRKYVLIDT 233 (444)
T ss_pred ---------------ccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcccc-ceeeeEEEC--CeEEEEEEC
Confidence 0000246899999999999999999999999999998 4 5555 333334443 456777899
Q ss_pred CCch---------hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490 480 IPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (643)
Q Consensus 480 ~g~~---------~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~ 550 (643)
+|-. +..+..++..++..||++++|+|++++.+ ++..+....+.+. ++++|+|+||||+.++..
T Consensus 234 AGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~ 306 (444)
T COG1160 234 AGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-EQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDE 306 (444)
T ss_pred CCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-HHHHHHHHHHHHc------CCCeEEEEEccccCCchh
Confidence 8821 33345678899999999999999999987 5556666666665 899999999999987521
Q ss_pred --c---HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490 551 --A---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETE 599 (643)
Q Consensus 551 --~---~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~ 599 (643)
. .+.++.....+++.|++++||++| |+.++|+.+.+.+..+..+++...
T Consensus 307 ~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~ 361 (444)
T COG1160 307 ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSL 361 (444)
T ss_pred hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHH
Confidence 1 334445555566778999999999 999999999999988877766543
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=8.7e-40 Score=352.97 Aligned_cols=330 Identities=22% Similarity=0.176 Sum_probs=228.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL 80 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 80 (643)
+..+|+|+|+||||||||+|+|++... +...++++ .......+...+..+.+|||||++. +...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT-~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVT-RDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCC-EeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 346899999999999999999998774 33344422 1223334455677899999999863 223345678
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
+.||++|+|+|+++..+... ..|...++.. ++|+++|+||+|+..... +..+.+...++ .+++|||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcCC
Confidence 99999999999998876654 2477777765 899999999999864311 11222333333 468999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR 240 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~ 240 (643)
|.|++++++++...+......
T Consensus 184 g~gi~eL~~~i~~~l~~~~~~----------------------------------------------------------- 204 (472)
T PRK03003 184 GRGVGDLLDAVLAALPEVPRV----------------------------------------------------------- 204 (472)
T ss_pred CCCcHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence 999999999876553210000
Q ss_pred HHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHH
Q 006490 241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG 320 (643)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~ 320 (643)
T Consensus 205 -------------------------------------------------------------------------------- 204 (472)
T PRK03003 205 -------------------------------------------------------------------------------- 204 (472)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCc
Q 006490 321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDP 400 (643)
Q Consensus 321 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~ 400 (643)
T Consensus 205 -------------------------------------------------------------------------------- 204 (472)
T PRK03003 205 -------------------------------------------------------------------------------- 204 (472)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEec
Q 006490 401 AAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
.......++|+|+|+||||||||+|+|++.++..++. ++++.+.....+...| ..+.+|||
T Consensus 205 ----------------~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DT 266 (472)
T PRK03003 205 ----------------GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDT 266 (472)
T ss_pred ----------------ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEEC
Confidence 0000124799999999999999999999998765444 4444444444455553 34568999
Q ss_pred CCc----------hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490 480 IPE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (643)
Q Consensus 480 ~g~----------~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~ 549 (643)
+|. +.+.. .++..+++.||++++|+|++++.+++.. .++..+... ++|+|+|+||+|+....
T Consensus 267 aG~~~~~~~~~~~e~~~~-~~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~------~~piIiV~NK~Dl~~~~ 338 (472)
T PRK03003 267 AGLRRRVKQASGHEYYAS-LRTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIEA------GRALVLAFNKWDLVDED 338 (472)
T ss_pred CCccccccccchHHHHHH-HHHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCChh
Confidence 994 22222 2245578999999999999999887765 344444433 89999999999997532
Q ss_pred ccHHHHHHHHHH---hCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCc
Q 006490 550 MAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPET 598 (643)
Q Consensus 550 ~~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~ 598 (643)
.......++.+. ..+.+++++||++| |++++|+.+.+.+..+..+++..
T Consensus 339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTG 391 (472)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence 211112222222 34456899999999 99999999999998777776544
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.4e-37 Score=335.07 Aligned_cols=326 Identities=18% Similarity=0.194 Sum_probs=225.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhccC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKRA 83 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~a 83 (643)
+|+|+|+||||||||+|+|++.. ++.+.++++.. +....+...+..+.+|||||+.. +......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d-~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRD-RKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccC-ceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999999977 34455553322 23334455677899999999743 223445678999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
|++++|+|+.+..+.... .+..++++. ++|+++|+||+|+...... . .+ ...++ +..++++||++|.|
T Consensus 80 d~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~~--~----~~-~~~lg-~~~~~~vSa~~g~g 147 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDAV--A----AE-FYSLG-FGEPIPISAEHGRG 147 (429)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccccc--H----HH-HHhcC-CCCeEEEeCCcCCC
Confidence 999999998876554442 467777776 8999999999998754322 1 11 12333 33689999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 006490 164 VPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQ 243 (643)
Q Consensus 164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (643)
++++++.+.+.+.....
T Consensus 148 v~~ll~~i~~~l~~~~~--------------------------------------------------------------- 164 (429)
T TIGR03594 148 IGDLLDAILELLPEEEE--------------------------------------------------------------- 164 (429)
T ss_pred hHHHHHHHHHhcCcccc---------------------------------------------------------------
Confidence 99999876544211000
Q ss_pred hhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhh
Q 006490 244 EKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFG 323 (643)
Q Consensus 244 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~ 323 (643)
+
T Consensus 165 -----------------------------------------------------~-------------------------- 165 (429)
T TIGR03594 165 -----------------------------------------------------E-------------------------- 165 (429)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred hhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcccc
Q 006490 324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAA 403 (643)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~~ 403 (643)
T Consensus 166 -------------------------------------------------------------------------------- 165 (429)
T TIGR03594 166 -------------------------------------------------------------------------------- 165 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCC
Q 006490 404 LRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIP 481 (643)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g 481 (643)
.......++|+++|.+|+|||||+|+|++.++..+++ + |+.+ .....+...| ..+.+|||+|
T Consensus 166 -------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~-~~~~~~~~~~--~~~~liDT~G 229 (429)
T TIGR03594 166 -------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD-SIDIPFERNG--KKYLLIDTAG 229 (429)
T ss_pred -------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC-cEeEEEEECC--cEEEEEECCC
Confidence 0001134799999999999999999999988765554 3 4433 3333344442 3677899999
Q ss_pred chhhh---------hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-cc
Q 006490 482 EEGVK---------KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MA 551 (643)
Q Consensus 482 ~~~~~---------~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~ 551 (643)
..... ...++..+++.||++++|+|++++.+.+.. .++..+... ++|+++|+||+|+.... ..
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~ 302 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA------GKALVIVVNKWDLVKDEKTR 302 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEECcccCCCHHHH
Confidence 53321 123345678999999999999998775543 344444443 79999999999998322 22
Q ss_pred HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCC
Q 006490 552 VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPE 597 (643)
Q Consensus 552 ~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~ 597 (643)
.+..+.+...+ +..+++++||++| |++++|+++.+.+..+..+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 303 EEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred HHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 23333333333 3346999999999 9999999999988766655543
No 5
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.7e-36 Score=326.77 Aligned_cols=326 Identities=16% Similarity=0.149 Sum_probs=221.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhcc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR 82 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 82 (643)
.+|+|+|++|||||||+|+|++... +.+.++++.. .........+..+.+|||||+.. .......+++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d-~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRD-RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCccc-ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4799999999999999999998873 4445553322 22233445568899999999986 22234467899
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
+|++|+|+|++++.+.... .+..++++. ++|+++|+||+|+.... +...++ ..++ +..++++||++|.
T Consensus 81 ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~------~~~~~~-~~lg-~~~~~~iSa~~g~ 148 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE------ADAYEF-YSLG-LGEPYPISAEHGR 148 (435)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch------hhHHHH-HhcC-CCCCEEEEeeCCC
Confidence 9999999998876554432 355566665 89999999999975421 111111 2233 2358999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490 163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 242 (643)
|++++++.+....... +
T Consensus 149 gv~~l~~~I~~~~~~~---------------------------~------------------------------------ 165 (435)
T PRK00093 149 GIGDLLDAILEELPEE---------------------------E------------------------------------ 165 (435)
T ss_pred CHHHHHHHHHhhCCcc---------------------------c------------------------------------
Confidence 9999998765410000 0
Q ss_pred HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322 (643)
Q Consensus 243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f 322 (643)
..
T Consensus 166 -----------------------------------------------------~~------------------------- 167 (435)
T PRK00093 166 -----------------------------------------------------EE------------------------- 167 (435)
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCccc
Q 006490 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA 402 (643)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~ 402 (643)
T Consensus 168 -------------------------------------------------------------------------------- 167 (435)
T PRK00093 168 -------------------------------------------------------------------------------- 167 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCC
Q 006490 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP 481 (643)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g 481 (643)
......++|+|+|++|+|||||+|+|++.++..+++ +.++.+.....+... ...+.++||+|
T Consensus 168 ---------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G 230 (435)
T PRK00093 168 ---------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAG 230 (435)
T ss_pred ---------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCC
Confidence 001124899999999999999999999988765554 333322223333333 35567899999
Q ss_pred chh-------h--hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH
Q 006490 482 EEG-------V--KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV 552 (643)
Q Consensus 482 ~~~-------~--~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~ 552 (643)
... . ....++..+++.||++|+|+|++++.+.+. ..+...+.+. ++|+++|+||||+.+.....
T Consensus 231 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-~~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~~ 303 (435)
T PRK00093 231 IRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-LRIAGLALEA------GRALVIVVNKWDLVDEKTME 303 (435)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCcEEEEEECccCCCHHHHH
Confidence 421 1 122335668899999999999999877554 3444444443 79999999999998543333
Q ss_pred HHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCC
Q 006490 553 QDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP 596 (643)
Q Consensus 553 ~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~ 596 (643)
+..+.+...+ +..+++++||++| |++++++.+.+.+..+..+++
T Consensus 304 ~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~ 351 (435)
T PRK00093 304 EFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRIS 351 (435)
T ss_pred HHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence 3333333333 3457999999999 999999999988766554443
No 6
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.7e-36 Score=342.22 Aligned_cols=332 Identities=21% Similarity=0.176 Sum_probs=226.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHhhc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELK 81 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~ 81 (643)
..+|+|+|+||||||||+|+|++... +.+.++++ ..+........+..+.+|||||+.. +......+++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT-~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT-RDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCee-EEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 36799999999999999999998763 34455432 1223334445677899999999864 2233446789
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|++|+|+|+++... .....|...++.. ++|+|+|+||+|+.... ......+...++ .++++||++|
T Consensus 354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~---~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVGLT--STDERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLG---EPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCC---CeEEEECCCC
Confidence 9999999999876433 3333578888765 89999999999986421 111222223333 4689999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~ 241 (643)
.||+++++++...+......
T Consensus 422 ~GI~eLl~~i~~~l~~~~~~------------------------------------------------------------ 441 (712)
T PRK09518 422 RGVGDLLDEALDSLKVAEKT------------------------------------------------------------ 441 (712)
T ss_pred CCchHHHHHHHHhccccccc------------------------------------------------------------
Confidence 99999999876653210000
Q ss_pred HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (643)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~ 321 (643)
...++
T Consensus 442 ---------------------------------------------------~~a~~------------------------ 446 (712)
T PRK09518 442 ---------------------------------------------------SGFLT------------------------ 446 (712)
T ss_pred ---------------------------------------------------ccccC------------------------
Confidence 00000
Q ss_pred hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (643)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (643)
T Consensus 447 -------------------------------------------------------------------------------- 446 (712)
T PRK09518 447 -------------------------------------------------------------------------------- 446 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEec
Q 006490 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
....++|+|+|+||||||||+|+|++.++..+.. + |+.+ .....+...|. .+.+|||
T Consensus 447 ------------------~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d-~~~~~~~~~~~--~~~liDT 505 (712)
T PRK09518 447 ------------------PSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRD-PVDEIVEIDGE--DWLFIDT 505 (712)
T ss_pred ------------------CCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcC-cceeEEEECCC--EEEEEEC
Confidence 0123689999999999999999999998755443 3 4444 33344555533 4568999
Q ss_pred CCch---------hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490 480 IPEE---------GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (643)
Q Consensus 480 ~g~~---------~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~ 550 (643)
+|.. .+....++..+++.||++++|+|++++.+++... ++..+... ++|+++|+||||+.+...
T Consensus 506 aG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 506 AGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMDEFR 578 (712)
T ss_pred CCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCChhH
Confidence 9942 1222223456689999999999999998866654 44444443 899999999999976332
Q ss_pred cHHHHHHHHHH---hCCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490 551 AVQDSARVTQE---LGIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETE 599 (643)
Q Consensus 551 ~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~ 599 (643)
.....+.+... ..+.+++++||++| |++++++.+.+.+..+..+++...
T Consensus 579 ~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~ 631 (712)
T PRK09518 579 RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGK 631 (712)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHH
Confidence 22222223322 23446799999999 999999999999987776666543
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=225.45 Aligned_cols=165 Identities=25% Similarity=0.441 Sum_probs=155.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
..-+||+|+|++|||||.|+.||.++.+...+..|++.++..+.+...|...++.+|||+||+++.++ +..++++||+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--t~syYR~ahG 84 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG 84 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--hHhhccCCCe
Confidence 45799999999999999999999999999999999999999999999998999999999999999998 8999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
||+|||+++..||..+..|+.++.++... +.|.++|+||+|+.+.+++ .++++.++.++++++++++|||++ |++
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 99999999999999999999999998775 7899999999999987766 778889999999988999999999 999
Q ss_pred HHHHHHHHHHhC
Q 006490 579 NVFSRIIWAAEH 590 (643)
Q Consensus 579 ~l~~~l~~~~~~ 590 (643)
+.|..+...+..
T Consensus 162 ~~F~~la~~lk~ 173 (205)
T KOG0084|consen 162 DAFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHHH
Confidence 999999997753
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=218.99 Aligned_cols=165 Identities=23% Similarity=0.354 Sum_probs=151.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+|++++|..|||||||+-|+..++|.....||++-.+..+.+.++....++.||||+|+++|.++ .+.|+++|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--apMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--APMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--ccceecCCcEE
Confidence 3589999999999999999999999999888899999999999999978889999999999999999 89999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|||+++.+||..++.|+.++.+..++ ++-+.+|+||+||...+++ .+++..+++..|+. ++++|||+| |+++
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~---~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASP---NIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVNE 157 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCC---CeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHHH
Confidence 9999999999999999999999987663 6778889999999985554 88999999999998 999999999 9999
Q ss_pred HHHHHHHHHhCCC
Q 006490 580 VFSRIIWAAEHPH 592 (643)
Q Consensus 580 l~~~l~~~~~~~~ 592 (643)
+|..|.+.+....
T Consensus 158 if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 158 IFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHhccCcc
Confidence 9999999886433
No 9
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.7e-28 Score=218.74 Aligned_cols=166 Identities=20% Similarity=0.358 Sum_probs=155.6
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+++|++|||||+++.++....+...+..|.+.++..+.+.++|...++.+|||+|++++..+ +..|+++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--HHHHHhhc
Confidence 3456799999999999999999999999999998889999999999999998889999999999999998 89999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
+++++|||+++..||+.+..|+..+.++.+. +.|.++|+||+|+..++++ .+..+.++.++|+. ++++|||+| |
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~N 161 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFN 161 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCC
Confidence 9999999999999999999999999998765 7999999999999987666 88999999999998 999999999 9
Q ss_pred HHHHHHHHHHHHhC
Q 006490 577 LNNVFSRIIWAAEH 590 (643)
Q Consensus 577 i~~l~~~l~~~~~~ 590 (643)
|++.|..|++.+..
T Consensus 162 I~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 162 IEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 10
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-28 Score=214.21 Aligned_cols=165 Identities=22% Similarity=0.372 Sum_probs=152.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+.+|++++|+.+||||||++|++.+.|...|.+|++.++....+.+.|....+.+|||+|||++.++ ...|++++.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl--ipsY~Rds~va 98 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSSVA 98 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh--hhhhccCCeEE
Confidence 3489999999999999999999999999999999999999999999988889999999999999999 89999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|||+++..||++...|+.+++...... +.-+++|+||.||.++++. .++.+..+++++.. ++++||+.| ||.+
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVKQ 175 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHHH
Confidence 99999999999999999999999876643 4667899999999998776 77888999999997 999999999 9999
Q ss_pred HHHHHHHHHhCC
Q 006490 580 VFSRIIWAAEHP 591 (643)
Q Consensus 580 l~~~l~~~~~~~ 591 (643)
+|..|...+...
T Consensus 176 lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 176 LFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHhccCc
Confidence 999988887644
No 11
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.4e-28 Score=215.78 Aligned_cols=168 Identities=18% Similarity=0.288 Sum_probs=145.1
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
......+||+|+|+.|||||+|..||..+.|.+.+..+.+... ....++++.++++||||+|++++...+..+|++||
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 3455578999999999999999999999999888776666654 55667788899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+||+|||+++..||+.+. .|+.+++++. .+.|.+|||||||+...+.+ . .+..+.++..++- ..++++||+++.|
T Consensus 84 Gii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~-~~~a~~fa~~~~~-~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEKRVV-S-TEEAQEFADELGI-PIFLETSAKDSTN 159 (205)
T ss_pred eEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhheec-C-HHHHHHHHHhcCC-cceeecccCCccC
Confidence 999999999999999999 5999999875 56799999999999988776 3 4445778888773 2399999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006490 164 VPDVFYYAQKAVLHP 178 (643)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (643)
|++.|..+...+...
T Consensus 160 Ve~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877543
No 12
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-28 Score=214.28 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=140.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|+.|||||||+-|+..+.|.+...++.+... ....++...+++.||||+|+++|.++.++|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 3568999999999999999999999999887444444332 44555666799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||+++.+||..+.. |.+.+++.. +++-+.|||||+|+...+.+ . .+....+++..+. .|+++||++|.||++
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~-~~ea~~yAe~~gl--l~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV-E-FEEAQAYAESQGL--LFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc-c-HHHHHHHHHhcCC--EEEEEecccccCHHH
Confidence 9999999999999995 999998764 45667789999999987776 3 4456778887764 599999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 006490 167 VFYYAQKAVLHPTA 180 (643)
Q Consensus 167 l~~~i~~~~~~~~~ 180 (643)
+|..|.+.++....
T Consensus 158 if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHhccCccc
Confidence 99999999876544
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.4e-27 Score=206.63 Aligned_cols=162 Identities=19% Similarity=0.321 Sum_probs=151.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+|+.++|+.|||||+|+.+++...|..+++.|++.++-.+.+.+++...++.+|||+|++.+.++ +..+++.|.++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--~~syYr~a~Ga 82 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--TRSYYRGAAGA 82 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--HHHHhccCcce
Confidence 4689999999999999999999999999999999999999999999988889999999999999999 89999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|||||+++++||..+..|+.+++++..+ +..+++++||+||...+.+ .++.+.|+++.|+. ++++||+++ |+++
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~---NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VEE 158 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNE---NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVEE 158 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCC---CcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHHH
Confidence 9999999999999999999999988633 8999999999999987665 88999999999998 899999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|......+.
T Consensus 159 aF~nta~~Iy 168 (216)
T KOG0098|consen 159 AFINTAKEIY 168 (216)
T ss_pred HHHHHHHHHH
Confidence 9999888653
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=199.16 Aligned_cols=162 Identities=26% Similarity=0.407 Sum_probs=151.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
-++.+|+|+||||||||+-+|....|...|..|++.++.+++++++|...++.|||++|++.+..+ +..+++..++++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--tstyyrgthgv~ 85 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--TSTYYRGTHGVI 85 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--HHHHccCCceEE
Confidence 467899999999999999999999999999889999999999999999999999999999999998 888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||+++++||....+|+.++...++ ..|-|+|+||.|+.+.+.+ .++++.++..+|+. +|++|||.+ |++.+
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEAM 160 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchHH
Confidence 99999999999999999999999887 7899999999999887666 78899999999998 999999999 99999
Q ss_pred HHHHHHHHhCC
Q 006490 581 FSRIIWAAEHP 591 (643)
Q Consensus 581 ~~~l~~~~~~~ 591 (643)
|..|.+++.+.
T Consensus 161 F~cit~qvl~~ 171 (198)
T KOG0079|consen 161 FHCITKQVLQA 171 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999987533
No 15
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=7.2e-27 Score=199.95 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=151.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+-+|+...|....+.|++.++.++.+.++|.+.++-+|||+|++++..+ +..++++|.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--TpSyyRgaqGi 87 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--TPSYYRGAQGI 87 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--CHhHhccCcee
Confidence 4589999999999999999999999998888778999999999999999999999999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|||++.+++|..+..|+.++..+.... ++-.++|+||+|...++.+ .++...+++++++. ++++|||+. |+..
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQC 164 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHHH
Confidence 99999999999999999999999887654 6778899999998865555 78889999999998 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 006490 580 VFSRIIWAAEH 590 (643)
Q Consensus 580 l~~~l~~~~~~ 590 (643)
.|+.+++.+.+
T Consensus 165 ~FeelveKIi~ 175 (209)
T KOG0080|consen 165 CFEELVEKIIE 175 (209)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 16
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=7e-27 Score=205.61 Aligned_cols=171 Identities=18% Similarity=0.312 Sum_probs=152.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
++..+||.|+|++|||||||+|++++.+|...+..|++.++..+-+.+++....+.+|||+|++++.++ ....+++||
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsL--g~aFYRgaD 83 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSL--GVAFYRGAD 83 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhc--ccceecCCc
Confidence 456799999999999999999999999999999999999999888888877778899999999999998 678899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCc---cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
++++|||++++.||+.+..|..++..+..+. +..-|+||++||+|+... .+..+.+..||+..|-.|++++|||..
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 9999999999999999999999987766532 347899999999999762 333888999999999888999999999
Q ss_pred -CHHHHHHHHHHHHhCCC
Q 006490 576 -DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~ 592 (643)
|+++.|+.+.+.+....
T Consensus 164 ~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANE 181 (210)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 99999999999876443
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=5.4e-26 Score=215.03 Aligned_cols=168 Identities=18% Similarity=0.276 Sum_probs=145.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+++|.++.+...+.+|.+.++....+..++....+.+||++|++.+..+ +..+++++|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l--~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI--FRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhcCCCEE
Confidence 4589999999999999999999999888777777777777777777766678889999999999887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|||++++.||+.+..|+.++....+ +.|++||+||+|+...+.. .++++.+++..++. +++|||++| |+++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~----~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~~ 157 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP----GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNITE 157 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence 999999999999999999999977653 7999999999999765443 67889999999986 999999999 9999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 006490 580 VFSRIIWAAEHPHLNIP 596 (643)
Q Consensus 580 l~~~l~~~~~~~~~~~~ 596 (643)
+|+++++.+.....+.|
T Consensus 158 ~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 158 SFTELARIVLMRHGRPP 174 (189)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999997765554443
No 18
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-26 Score=209.56 Aligned_cols=170 Identities=16% Similarity=0.260 Sum_probs=147.4
Q ss_pred CCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhh
Q 006490 3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEEL 80 (643)
Q Consensus 3 ~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 80 (643)
.+........+||+++|++|||||+++.+|..+.|...+..+.+... .....++..+.+++|||+|++++..+...|+
T Consensus 3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 34444566679999999999999999999999999877666555544 3344556678899999999999999999999
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++|+++++|||+++..+|+++.. |+..+.++.+ +.|.+|||||+|+...+.+ ..+..+.++.++| ..++|+||+
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G--~~F~EtSAk 157 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYG--IKFFETSAK 157 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhC--CeEEEcccc
Confidence 99999999999999999999995 9999998764 8999999999999987776 5667899999997 379999999
Q ss_pred cCCChhHHHHHHHHHHhC
Q 006490 160 TMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~ 177 (643)
+|.||.+.|..+.+.+..
T Consensus 158 ~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998774
No 19
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=198.74 Aligned_cols=168 Identities=21% Similarity=0.298 Sum_probs=144.8
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
+..-..+||.|+|.+|||||||+-+|+.+.|.+..|.+.+... ..+.+++..+++.||||+|+++|..+++.|+++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 3445569999999999999999999999999888777555544 55677788999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
++|+|||++.+++|..+. .|++++..++ +++-.++|+||+|...++.+ + .++...++.+++. -+++|||++.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V-~-reEG~kfAr~h~~--LFiE~SAkt~~ 160 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVV-D-REEGLKFARKHRC--LFIECSAKTRE 160 (209)
T ss_pred eeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccc-c-HHHHHHHHHhhCc--EEEEcchhhhc
Confidence 999999999999999997 6999998875 56777899999998876666 4 4445677888874 49999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 006490 163 QVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~~ 179 (643)
||+.+|+++..+++...
T Consensus 161 ~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETP 177 (209)
T ss_pred cHHHHHHHHHHHHhcCc
Confidence 99999999999987543
No 20
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=4.8e-26 Score=212.93 Aligned_cols=163 Identities=26% Similarity=0.391 Sum_probs=134.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+.+++.+.|...+.++.+. ......++...+.+.||||+|++++..+...+++.+|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987765444433 32334455667899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc---------cchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---------ATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
++++.+++.+...|++.++...++.|++|||||+|+.+.+. . ...+....+++.++. ..++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP-ITTAQGEELRKQIGA-AAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC-CCHHHHHHHHHHcCC-CEEEECCCCccc
Confidence 99999999985579999987777899999999999965431 1 134456677777652 258999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006490 163 QVPDVFYYAQKAVLH 177 (643)
Q Consensus 163 gi~~l~~~i~~~~~~ 177 (643)
||+++|+.+++.+..
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987644
No 21
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=7.4e-26 Score=211.70 Aligned_cols=161 Identities=19% Similarity=0.382 Sum_probs=139.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.++||||||+.+++.+.+...+.||.+..+. ..+..+|...++.+|||+|++.+..+ +..++++||++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcccccc--chhhcCCCcEEEE
Confidence 68999999999999999999999998888898877664 34556666778889999999999887 7788999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----------ccHHHHHHHHHHhCCCCcEEee
Q 006490 504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS 571 (643)
|||++++.||+.+ ..|+..+..... +.|+++|+||+|+.+.+ ...++...+++..+..++++||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 154 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAP----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS 154 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 689999876643 79999999999996543 3367888999999985699999
Q ss_pred eccC-CHHHHHHHHHHHHhCC
Q 006490 572 MKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~~~ 591 (643)
|++| |++++|+.+++.+.+|
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 9999 9999999999987544
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=4.9e-26 Score=214.29 Aligned_cols=165 Identities=25% Similarity=0.377 Sum_probs=136.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+||+++|++|||||||+++++.+.|...+.++.+. ......++...+.+.||||+|++++..+.+.+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 35689999999999999999999999987775544433 23444556677899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC----------C-ccchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD----------H-NATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|||++++.+++.+...|.+.+++.+++.|++|||||+|+... + .. ...+..+.++++++. .+|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTP-VSYDQGANMAKQIGA-ATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCC-CCHHHHHHHHHHcCC-CEEEECC
Confidence 999999999999855799999888889999999999998642 1 11 234557888888873 2699999
Q ss_pred cccCCC-hhHHHHHHHHHHh
Q 006490 158 ATTMIQ-VPDVFYYAQKAVL 176 (643)
Q Consensus 158 a~~~~g-i~~l~~~i~~~~~ 176 (643)
|++|.| |+++|+.+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988643
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=9.9e-26 Score=215.22 Aligned_cols=160 Identities=18% Similarity=0.343 Sum_probs=139.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
++|+++|.+|||||||++++..+.+...+.+|.+.++....+..+|....+.+||++|++.+..+ +..++++||++|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--~~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--HHHHhcCCCEEEE
Confidence 37999999999999999999999998888888888888788888866778889999999999888 7889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHh-CCCCcEEeeeccC-CHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQEL-GIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~-~~~~~~~vSa~~g-~i~~l 580 (643)
|||++++.||+.+..|+..+...... +.|+++|+||+|+...+.. .+..+++++.+ ++. +++|||++| |++++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~ 154 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEI 154 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHH
Confidence 99999999999999999888765432 7999999999999764444 56677788776 565 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|+++++.+.
T Consensus 155 F~~l~~~~~ 163 (202)
T cd04120 155 FLKLVDDIL 163 (202)
T ss_pred HHHHHHHHH
Confidence 999998764
No 24
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.8e-26 Score=203.97 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=141.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--CcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
...+.+||+++|+.+||||||++|++.+.|..++..+.+..... ..+.+..+++++|||+|+++|..+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34556999999999999999999999999988888777665533 3444567889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcC-C-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+|+|||+++..||++.. +|++.+++.. . +.-++|||||.||.+.+++ ..++ .+..+++++. .|+++||+.|.|
T Consensus 98 aviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s~eE-g~~kAkel~a--~f~etsak~g~N 172 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-SIEE-GERKAKELNA--EFIETSAKAGEN 172 (221)
T ss_pred EEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhh-hHHH-HHHHHHHhCc--EEEEecccCCCC
Confidence 99999999999999998 5999997653 3 4667889999999998877 4444 4577888885 599999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 006490 164 VPDVFYYAQKAVLHPT 179 (643)
Q Consensus 164 i~~l~~~i~~~~~~~~ 179 (643)
|.++|..|...++...
T Consensus 173 Vk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 173 VKQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHHhccCcc
Confidence 9999999887765543
No 25
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.9e-26 Score=190.97 Aligned_cols=163 Identities=20% Similarity=0.360 Sum_probs=149.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+|+.|+|...||||||+.++++..|...+..|.+.++.++++--...+.++.+|||+|+|.+..+ +..++++|++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--TTayyRgamg 96 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--TTAYYRGAMG 96 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--HHHHhhccce
Confidence 34579999999999999999999999999988889999999988777667788999999999999888 8899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+|+|||+++.+||..+..|...|..++-. +.|+|+|+||||+.+++.+ .+....+++++|+. ++++|||.+ |++
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk 172 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK 172 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence 99999999999999999999999877544 8999999999999988776 78899999999998 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|+.+...+.
T Consensus 173 ~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 173 QVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 26
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.9e-26 Score=204.81 Aligned_cols=163 Identities=21% Similarity=0.345 Sum_probs=152.0
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+++|+++||||-|+.|+...+|...+.+|++..+....+.++|...+..||||+|+++++.+ +..++++|.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--tSaYYrgAv 88 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--TSAYYRGAV 88 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--cchhhcccc
Confidence 456799999999999999999999999999999999999999999999988899999999999999998 899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++...+|+.+.+|+.+++.+... ++++++|+||+||.+.+.+ .++...++++.++. ++++||+.+ |+
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tNV 164 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATNV 164 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEecccccccH
Confidence 999999999999999999999999988755 8999999999999886555 78899999999998 999999999 99
Q ss_pred HHHHHHHHHHH
Q 006490 578 NNVFSRIIWAA 588 (643)
Q Consensus 578 ~~l~~~l~~~~ 588 (643)
++.|+.++..+
T Consensus 165 e~aF~~~l~~I 175 (222)
T KOG0087|consen 165 EKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=1e-25 Score=214.83 Aligned_cols=168 Identities=26% Similarity=0.393 Sum_probs=136.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
..+||+++|++|||||||+++++.+.|...+.++.+.. .....++...+.+.||||+|++.+..+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999876655444332 23334556678899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcc
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
||++++.+++.+...|.+.++...++.|++||+||+|+.+.... ....+..+.++++++. .++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA-VKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-cEEEEeCCC
Confidence 99999999999976799888776678999999999999654210 0122345666666653 269999999
Q ss_pred cCCChhHHHHHHHHHHhCCC
Q 006490 160 TMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~ 179 (643)
+|.||+++|+++++.+..+.
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887653
No 28
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-26 Score=200.33 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=142.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+|++++|+.|||||+|+.+++.+.|.+....+.+... ....++...++++||||+|++.+.+.+..+|+.|-++|+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 458999999999999999999999999887666555443 445677888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|||++++++|..+.. |+..++.. .++..++|+|||+|+...+.+ .+++.+.++++.+- .++++||+++.||++.
T Consensus 85 Vydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 85 VYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVEEA 159 (216)
T ss_pred EEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHHHH
Confidence 999999999999995 99999887 489999999999999988876 55667899999874 4889999999999999
Q ss_pred HHHHHHHHh
Q 006490 168 FYYAQKAVL 176 (643)
Q Consensus 168 ~~~i~~~~~ 176 (643)
|......+.
T Consensus 160 F~nta~~Iy 168 (216)
T KOG0098|consen 160 FINTAKEIY 168 (216)
T ss_pred HHHHHHHHH
Confidence 998877764
No 29
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=1.4e-25 Score=212.14 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=135.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+++|++|||||||+++|..+.+...++++.+... ....++...+.+.+|||+|++.+..+++.+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999999888666544333322 223445556889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|||++++.+++.+. .|++.+....++.|+||||||+|+...+.+ . .+.++.+++..+ .++++|||++|.||+++|
T Consensus 85 VfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~-~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 85 VYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKRQV-A-TEQAQAYAERNG--MTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhccCC-C-HHHHHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence 99999999999997 699999887789999999999999776555 3 445677877775 379999999999999999
Q ss_pred HHHHHHHhC
Q 006490 169 YYAQKAVLH 177 (643)
Q Consensus 169 ~~i~~~~~~ 177 (643)
+++.+.+..
T Consensus 160 ~~l~~~i~~ 168 (189)
T cd04121 160 TELARIVLM 168 (189)
T ss_pred HHHHHHHHH
Confidence 999987753
No 30
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.2e-25 Score=211.22 Aligned_cols=162 Identities=28% Similarity=0.381 Sum_probs=133.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||+++|+++.|...+.++.+. ......++...+.+.+|||+|++.+....+.+++.+|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 379999999999999999999999987775544332 2233455566788999999999999888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
|++++.+++.+...|.+.+++.+++.|++|||||+|+... ..+ ..+..++++++++. .++++|||
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~-~~~~E~SA 157 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGA-EIYLECSA 157 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCC-CEEEECcc
Confidence 9999999999755799999988889999999999998642 122 34456788888773 26999999
Q ss_pred ccCCC-hhHHHHHHHHHHh
Q 006490 159 TTMIQ-VPDVFYYAQKAVL 176 (643)
Q Consensus 159 ~~~~g-i~~l~~~i~~~~~ 176 (643)
++|+| |+++|..+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999988543
No 31
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=2.7e-25 Score=209.22 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=139.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+++++.+.+...+.||....+. ..+..++....+.+|||+|++.+..+ ...++++||++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~--~~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhh--hhhhcCCCCEE
Confidence 4589999999999999999999999998888888876654 45666766778889999999999887 67889999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCc
Q 006490 502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~ 567 (643)
++|||++++.||+.+ ..|+..+.+..+ +.|+++|+||+||.+. ....++++++++++++.++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999997 789999987654 7899999999998641 1337789999999997559
Q ss_pred EEeeeccC-C-HHHHHHHHHHHHh
Q 006490 568 IPVSMKSK-D-LNNVFSRIIWAAE 589 (643)
Q Consensus 568 ~~vSa~~g-~-i~~l~~~l~~~~~ 589 (643)
++|||++| | ++++|..+++.+.
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999999 8 9999999998643
No 32
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=2.6e-25 Score=215.80 Aligned_cols=166 Identities=25% Similarity=0.314 Sum_probs=137.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+||+++|++|||||||+++|+.+.|...+.++.+ .......++...+.+.||||+|++.+....+.++++||++|+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 3568999999999999999999999998777544433 333444556677899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEEe
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
|||++++.+++.+...|.+.++..+++.|+|||+||+|+... ..+ ..+..+.++++++. ..|++|
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~-~~~~Et 167 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGA-EVYLEC 167 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCC-CEEEEc
Confidence 999999999998655799999887778999999999998642 223 34456888888873 258999
Q ss_pred CcccCC-ChhHHHHHHHHHHhCC
Q 006490 157 SATTMI-QVPDVFYYAQKAVLHP 178 (643)
Q Consensus 157 Sa~~~~-gi~~l~~~i~~~~~~~ 178 (643)
||++|. ||+++|+.+++.+...
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHh
Confidence 999998 8999999999887643
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=2.4e-25 Score=209.08 Aligned_cols=161 Identities=22% Similarity=0.352 Sum_probs=130.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+++|+.+.|...+.++.+. ......+....+.+.||||+|++++...+..+++.+|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 69999999999999999999999987665554433 22233444556889999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
++++.+++.+...|.+.++...+++|+|||+||+|+.... .. ...+..+.++++++. ..+++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~-v~~~~~~~~a~~~~~-~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP-ITPETGEKLARDLKA-VKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC-cCHHHHHHHHHHhCC-cEEEEecCCC
Confidence 9999999999767999998777789999999999986541 11 123345556666653 3699999999
Q ss_pred CCChhHHHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKAV 175 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~ 175 (643)
|.|++++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988754
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=8.1e-25 Score=204.12 Aligned_cols=161 Identities=19% Similarity=0.356 Sum_probs=139.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+++|.++.+...+++|++.++....+...+....+.+||++|++.+..+ +..+++++|+++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEEE
Confidence 379999999999999999999999988888778888777777777766678889999999988887 678899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA 155 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999999999999999888765432 6899999999999765543 56788888888876 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (166)
T cd04122 156 FLETAKKIY 164 (166)
T ss_pred HHHHHHHHh
Confidence 999987663
No 35
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.93 E-value=3.4e-25 Score=211.57 Aligned_cols=161 Identities=20% Similarity=0.327 Sum_probs=131.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+.|+++|++|||||||+++|+.+.|...++++.+... ....+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3699999999999999999999999877665544332 23445555688999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+. .|...++... .+.|++||+||+|+...+.+ . .+..+.+++++.. ..+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~~v-~-~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI-S-RQQGEKFAQQITG-MRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc-C-HHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHH
Confidence 999999999997 5999887654 57999999999999765554 3 3344566666533 3699999999999999999
Q ss_pred HHHHHHhC
Q 006490 170 YAQKAVLH 177 (643)
Q Consensus 170 ~i~~~~~~ 177 (643)
++++.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987653
No 36
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=9.5e-26 Score=198.51 Aligned_cols=170 Identities=21% Similarity=0.283 Sum_probs=142.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
...+.-+||+|+|++|||||||.|++++.+|...+..+.+... +...++..-+.++||||+|+++|.++.-.++++||
T Consensus 4 ~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 4 LRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred cCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCc
Confidence 3456679999999999999999999999998777555444433 55566677788999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhc-C----CCCcEEEEEecccCCCCC-ccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGDH-NATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~-~----~~~pvilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
.+++|||++++.+++.+.. |.+++-.. . ...|+||+|||+|+.... .+ ......+.|+..-+++ +|+|+||
T Consensus 84 cCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~gni-pyfEtSA 160 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKGNI-PYFETSA 160 (210)
T ss_pred eEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccce-eeHHHHHHHHHhcCCc-eeEEecc
Confidence 9999999999999999995 98887443 2 367999999999997632 33 3556678999999875 8999999
Q ss_pred ccCCChhHHHHHHHHHHhCCC
Q 006490 159 TTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~ 179 (643)
|...||.+.|+.+.+.++...
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccccHHHHHHHHHHHHHhcc
Confidence 999999999999999877543
No 37
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=8.6e-25 Score=204.27 Aligned_cols=164 Identities=37% Similarity=0.608 Sum_probs=138.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
|+.+||+++|.+|||||||+++|+++.+. ..+.||++.++....+..+|....+.+||++|++.+..+ +..++++||
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--NDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--chhhhhcCC
Confidence 67899999999999999999999999998 778889988887777888866667788999999887766 677889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|+|++++.+|+.+..|+..+... . ++|+++|+||+|+.+.... ....+++++.+++..++++||++| |+
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML---G--EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC---C--CCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 999999999999999888888765321 1 7999999999999654332 345677888888866799999999 99
Q ss_pred HHHHHHHHHHHhCC
Q 006490 578 NNVFSRIIWAAEHP 591 (643)
Q Consensus 578 ~~l~~~l~~~~~~~ 591 (643)
+++|+.+.+.+..+
T Consensus 155 ~~lf~~l~~~~~~~ 168 (169)
T cd01892 155 NELFTKLATAAQYP 168 (169)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999987543
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6.2e-25 Score=206.45 Aligned_cols=158 Identities=18% Similarity=0.295 Sum_probs=136.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||++++.++.+...+.||....+. ..+..++....+.+|||+|++.+..+ ...++++||++|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNV--RPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhc--chhhcCCCCEEEE
Confidence 68999999999999999999999998888888876654 45667766778889999999988887 6778999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.||+.+ ..|+..+.+..+ +.|+++|+||+||... ....++++++++++++.++++
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCP----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCC----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999999996 789999987754 7899999999999641 133678999999999856999
Q ss_pred eeeccC-C-HHHHHHHHHHHH
Q 006490 570 VSMKSK-D-LNNVFSRIIWAA 588 (643)
Q Consensus 570 vSa~~g-~-i~~l~~~l~~~~ 588 (643)
|||++| | ++++|..+++.+
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHH
Confidence 999999 7 999999999854
No 39
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=6.3e-25 Score=212.06 Aligned_cols=168 Identities=26% Similarity=0.347 Sum_probs=137.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+|+|++|||||||+++|+.+.|...+.++.. .......++...+.+.||||+|++.+....+.+++.+|++|+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 7999999999999999999999998777544433 333444566677889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc----------cchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++++.+++.+...|.+.++..+++.|+||||||+|+..+.. .-...+..+.++++++. .+|+||||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA-VSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC-CEEEEcCCCcC
Confidence 99999999997789998888888999999999999965311 00123456777777764 27999999999
Q ss_pred CC-hhHHHHHHHHHHhCCCCC
Q 006490 162 IQ-VPDVFYYAQKAVLHPTAP 181 (643)
Q Consensus 162 ~g-i~~l~~~i~~~~~~~~~~ 181 (643)
.| |+++|+.++...+....+
T Consensus 161 ~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 161 ERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CcCHHHHHHHHHHHHHhccCC
Confidence 85 999999999987654443
No 40
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=9e-25 Score=203.76 Aligned_cols=165 Identities=53% Similarity=0.908 Sum_probs=134.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+||+|+|++|||||||+++|+++.+...++++....+....+....+.+.+|||||.+.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999987666654444455555666788999999999988777777888999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 172 (643)
+++.+++.+...|.+.++..+.+.|+++|+||+|+.+.......++....+...+....++++|||++|.|++++|+.+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 99999999876799988877678999999999999765432112344445555665444799999999999999999998
Q ss_pred HHHhC
Q 006490 173 KAVLH 177 (643)
Q Consensus 173 ~~~~~ 177 (643)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01893 161 KAVLH 165 (166)
T ss_pred HHhcC
Confidence 87654
No 41
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=1.4e-24 Score=203.47 Aligned_cols=161 Identities=16% Similarity=0.301 Sum_probs=137.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|.+|||||||++++.++.+...+.||++..+. ..+...|....+.+||++|++.+..+ +..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAM--RDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHH--hHHHhhcCCEEE
Confidence 379999999999999999999999998888888876554 34556656677889999999998887 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.||+.+..|...+.+..... ++|+++|+||+|+...+.. .++...+++..+++ +++|||++| |++++
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~--~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTE--DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDA 155 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHH
Confidence 9999999999999998888776653322 7999999999999765443 56778888888886 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|++|++.+.
T Consensus 156 f~~l~~~~~ 164 (172)
T cd04141 156 FHGLVREIR 164 (172)
T ss_pred HHHHHHHHH
Confidence 999998765
No 42
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.4e-24 Score=210.75 Aligned_cols=162 Identities=17% Similarity=0.269 Sum_probs=140.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+++|+++.+...+.||+...+.. .+.+.|....+.+|||+|++.+..+ ...++++||++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~--~~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHH--HHHHcCCCcEE
Confidence 35899999999999999999999999998888998876644 4667777788899999999999887 77889999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCc
Q 006490 502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~ 567 (643)
++|||++++.||+.+ ..|+..+.+..+ +.|+|+|+||+||... ....++++++++.+++.++
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999984 789999887654 7899999999998641 2336789999999998669
Q ss_pred EEeeeccC--CHHHHHHHHHHHHhC
Q 006490 568 IPVSMKSK--DLNNVFSRIIWAAEH 590 (643)
Q Consensus 568 ~~vSa~~g--~i~~l~~~l~~~~~~ 590 (643)
++|||++| |++++|..+++.+..
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 99999998 599999999998753
No 43
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.1e-25 Score=187.38 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=150.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
..-+|++++|+.|+|||.|+.+|+..++...+..|++.++..+++.+.|...++.||||+|++++.++ +..++++|-+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--tRsYYRGAAG 84 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAAG 84 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence 34589999999999999999999999999988889999999999999988899999999999999999 8999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
.++|||+++++||+.+..|+.+++...+. ++-+|+++||.||...+++ ..++.+++++..+. ++++||++| |++
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~---nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNVE 160 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVE 160 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCC---cEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccHH
Confidence 99999999999999999999999887654 7889999999999987766 77888999999997 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
+.|-...+.+.
T Consensus 161 EaFl~c~~tIl 171 (214)
T KOG0086|consen 161 EAFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHHH
Confidence 99998888654
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.8e-24 Score=201.97 Aligned_cols=161 Identities=22% Similarity=0.396 Sum_probs=140.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||++++.+..+...+.||.+.++....+..++....+.+||++|++.+..+ ...+++.||+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhCCCCEEE
Confidence 489999999999999999999999998888888887777777777866678889999999888877 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+.. .+....+++..+++ ++++||++| |++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASE---DVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEEA 156 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999999999999999999998775432 7899999999999864433 56677888888886 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|+++.+.+.
T Consensus 157 ~~~i~~~~~ 165 (167)
T cd01867 157 FFTLAKDIK 165 (167)
T ss_pred HHHHHHHHH
Confidence 999998764
No 45
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.5e-24 Score=208.80 Aligned_cols=165 Identities=18% Similarity=0.285 Sum_probs=140.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
+||+|+|++|||||||+++|+++.+...+.||.+.++....+..+ +....+.+||++|++.+..+ +..++++||+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM--TRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh--HHHHhCCCCEEE
Confidence 589999999999999999999999888888888877777777776 66778889999999988887 788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
+|||++++.+|+.+..|+..+...... ...++|+++|+||+|+... ....+.+.++++..++.+++++||++| |+++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999999888654221 1127899999999999743 334677889999999656999999999 9999
Q ss_pred HHHHHHHHHhC
Q 006490 580 VFSRIIWAAEH 590 (643)
Q Consensus 580 l~~~l~~~~~~ 590 (643)
+|++|++.+..
T Consensus 159 ~f~~l~~~l~~ 169 (201)
T cd04107 159 AMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHH
Confidence 99999997753
No 46
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9.5e-26 Score=190.24 Aligned_cols=160 Identities=23% Similarity=0.268 Sum_probs=141.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
-++.+|+|++|||||+|+.+|..+.|...+..+.+... ..+.+.+..+++.||||+|++.+..++..++++.|++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999888776665544 3456667889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
||+++.+||.+.. +|++.++..|+..|-+|||||+|....+.+ ..+..+.++.+.+ ..+|++||+.+.|++..|.
T Consensus 88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mg--ie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMG--IELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcC--chheehhhhhcccchHHHH
Confidence 9999999999998 699999999999999999999999877665 4455677888877 3699999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
.|.+.++
T Consensus 163 cit~qvl 169 (198)
T KOG0079|consen 163 CITKQVL 169 (198)
T ss_pred HHHHHHH
Confidence 9988765
No 47
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=1.2e-24 Score=205.31 Aligned_cols=166 Identities=17% Similarity=0.283 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++|+++.+...+.||.+.++....+..+|....+.+||++|++.+..+ +..++++||++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM--LPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--hHHHCcCCCEEEE
Confidence 58999999999999999999999998888899888787777888866778889999999998887 6778999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc----c--ccHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----T--MAVQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
|||++++.||+.+..|+..+.+.... ..| ++|+||+|+... . ...+..+++++.++++ +++|||++| |
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~ 153 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSIN 153 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 99999999999999999998775432 566 678999999521 1 1245677788888865 999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCCC
Q 006490 577 LNNVFSRIIWAAEHPHLNIP 596 (643)
Q Consensus 577 i~~l~~~l~~~~~~~~~~~~ 596 (643)
++++|+++.+.+.......|
T Consensus 154 v~~lf~~l~~~l~~~~~~~~ 173 (182)
T cd04128 154 VQKIFKIVLAKAFDLPLTIP 173 (182)
T ss_pred HHHHHHHHHHHHHhcCCChh
Confidence 99999999988764433333
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=2.4e-24 Score=200.76 Aligned_cols=160 Identities=20% Similarity=0.354 Sum_probs=137.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++|.+.++...+.||.+.++....+..++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~--~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI--TTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHccCCcEEEE
Confidence 69999999999999999999999998888888877676666666655677889999999888877 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+.+.+.. .+...++++.++++ ++++||++| |++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVF 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 99999999999999999998765432 6899999999999765433 56677788888886 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
+++.+.+.
T Consensus 156 ~~l~~~~~ 163 (165)
T cd01865 156 ERLVDIIC 163 (165)
T ss_pred HHHHHHHH
Confidence 99988653
No 49
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=1.7e-24 Score=206.33 Aligned_cols=162 Identities=19% Similarity=0.361 Sum_probs=137.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|.+|||||||++++..+.+...+.||....+. ..+.+++....+.+|||+|++.+..+ +..++++||++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l--~~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL--RTLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhccCCCEEE
Confidence 479999999999999999999999998888888876554 33456666778889999999999888 778899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcE
Q 006490 503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPI 568 (643)
Q Consensus 503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~ 568 (643)
+|||++++.||+.+. .|...+..... +.|+++|+||.||.+.. ...++.+.+++.++..+++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCP----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999997 58887766543 79999999999996532 1245778889998864599
Q ss_pred EeeeccC-CHHHHHHHHHHHHhCC
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
+|||++| |++++|+.+++.+..+
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999 9999999999988654
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=1e-24 Score=204.68 Aligned_cols=161 Identities=24% Similarity=0.332 Sum_probs=130.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||+.+++.+.|...+.++... ......++...+.+.+|||+|++.+...++.+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 479999999999999999999999887765443332 2233345556688999999999999888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
|++++.+++.+...|.+.+....++.|++||+||+|+..... . ...+....++++++. .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC-CCHHHHHHHHHHcCC-cEEEEeccc
Confidence 999999999997679998877767899999999999864321 1 123445667777764 368999999
Q ss_pred cCCChhHHHHHHHHH
Q 006490 160 TMIQVPDVFYYAQKA 174 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (643)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999988764
No 51
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1.3e-24 Score=203.65 Aligned_cols=161 Identities=17% Similarity=0.312 Sum_probs=132.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||+++++++.|...+.++.+. ......++...+.+.+|||||++++..+++.+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999987665444432 2233455566688999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+.+. .+++|+++|+||+|+.....+ . .+....+++.++ .++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV-T-TEEGRNLAREFN--CPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc-C-HHHHHHHHHHhC--CEEEEEecCCCCCHHHHH
Confidence 9999999999984 88777653 357999999999998765544 3 334566777665 379999999999999999
Q ss_pred HHHHHHHhC
Q 006490 169 YYAQKAVLH 177 (643)
Q Consensus 169 ~~i~~~~~~ 177 (643)
+++.+.+..
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=3.3e-24 Score=208.47 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-CcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
+||+++|++|||||||+++|.+..+...+.||.+.++....+.+++ ....+.+||++|++.+..+ ...+++.||++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--LDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH--HHHHhhcCCEEE
Confidence 5899999999999999999999999888888988777777777764 3567889999999888777 677899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.||+.+..|+..+.+.......+.|+++|+||+|+...+. ..+..+.+++.+++. ++++||++| |++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l 157 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL 157 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999999999999999998876542112578999999999975433 356788889888876 899999999 99999
Q ss_pred HHHHHHHHhCC
Q 006490 581 FSRIIWAAEHP 591 (643)
Q Consensus 581 ~~~l~~~~~~~ 591 (643)
|++|++.+...
T Consensus 158 f~~l~~~l~~~ 168 (215)
T cd04109 158 FQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHhc
Confidence 99999987643
No 53
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=3.1e-24 Score=199.02 Aligned_cols=158 Identities=23% Similarity=0.386 Sum_probs=136.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++++++.+...+.||.+.++....+...+....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI--TKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh--HHHHhcCCcEEEE
Confidence 48999999999999999999999998777788887777777777765667889999999888877 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.||+.+..|+..+...... +.|+++|+||.|+...+.. .++...+++.++++ ++++||++| |++++|
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPE---GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999988765432 6899999999999765543 67888888888876 999999999 999999
Q ss_pred HHHHHH
Q 006490 582 SRIIWA 587 (643)
Q Consensus 582 ~~l~~~ 587 (643)
++|.+.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 54
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=4.3e-24 Score=199.28 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=139.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+++++++.+...+.+|.+.++....+...|....+.+||++|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhCcCCEEE
Confidence 479999999999999999999999988877788887777777777766677889999999888776 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.||..+..|+..+...... +.|+++|+||+|+...... .+.+..+++..+++ ++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQA 155 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHH
Confidence 999999999999999999998776422 6899999999998765443 56778888888886 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|+.+.+.+.
T Consensus 156 ~~~i~~~~~ 164 (166)
T cd01869 156 FMTMAREIK 164 (166)
T ss_pred HHHHHHHHH
Confidence 999998764
No 55
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=3e-24 Score=199.58 Aligned_cols=159 Identities=22% Similarity=0.389 Sum_probs=133.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++++++.+...+.||+++. ....+..++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAM--RDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchH--HHHHhhcCCEEEE
Confidence 699999999999999999999999888887887643 3455666655667789999999988887 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+....... +.|+++|+||+|+...+.. .+....+++.++. +++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTE--NVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDEVF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHH
Confidence 999999999999999998887764433 7999999999999764433 4566677888885 4999999999 999999
Q ss_pred HHHHHHH
Q 006490 582 SRIIWAA 588 (643)
Q Consensus 582 ~~l~~~~ 588 (643)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 56
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=9.1e-25 Score=187.65 Aligned_cols=163 Identities=22% Similarity=0.351 Sum_probs=145.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
..+++.++|++-||||||++.+..++++.-++||.+.++....+.+. |.+.++.+|||+|++++.++ +..+++++-+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi--tksyyrnsvg 84 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--TKSYYRNSVG 84 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--HHHHhhcccc
Confidence 46899999999999999999999999999999999999888877764 56678899999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||+++..||+.+..|+.+...+.... .++-+.+|++|+||...+++ .++++.++...|+. ++++||++| |++
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P-~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NVe 162 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGP-DKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNVE 162 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCC-CeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcHH
Confidence 999999999999999999999887665521 14446789999999987766 88999999999998 999999999 999
Q ss_pred HHHHHHHHHH
Q 006490 579 NVFSRIIWAA 588 (643)
Q Consensus 579 ~l~~~l~~~~ 588 (643)
+.|..|.+.+
T Consensus 163 EAF~mlaqeI 172 (213)
T KOG0091|consen 163 EAFDMLAQEI 172 (213)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.9e-24 Score=205.93 Aligned_cols=167 Identities=22% Similarity=0.265 Sum_probs=131.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
.||+|+|++|||||||+++|.++.+...+.++.+. .......+...+.+.||||+|++.+......+++.+|++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 37999999999999999999999887664443322 22223344556889999999999988888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++++.+++.+...|++.+....++.|++||+||+|+....... ...+....++...+. .++++|||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence 9999999998767999998877789999999999997653210 112223445555543 36999999999
Q ss_pred CChhHHHHHHHHHHhCCCC
Q 006490 162 IQVPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~ 180 (643)
.||+++|+++++.+..+..
T Consensus 160 ~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 160 RGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999998876554
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=4.6e-24 Score=198.63 Aligned_cols=160 Identities=21% Similarity=0.393 Sum_probs=134.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++++.+.+...+.||++..+. ..+...+....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhH--HHHHHhhCCEEEE
Confidence 68999999999999999999998887777788776553 45666655667789999999998887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+....... +.|+++|+||+|+...... .+....+++.++++ ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEIF 155 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHHH
Confidence 999999999999999998887654323 7999999999999764433 45567788888875 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
No 59
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=6e-24 Score=197.20 Aligned_cols=159 Identities=20% Similarity=0.356 Sum_probs=134.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|+|+++.+...+.||+++.+ ...+..++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHH--HHHHHhcCCEEEE
Confidence 6899999999999999999999998888878877654 444556655566778999999988887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+............+++.++++ ++++||++| |++++|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSD--DVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFY 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHH
Confidence 999999999999999988887764333 789999999999977444466777888888876 999999999 9999999
Q ss_pred HHHHHH
Q 006490 583 RIIWAA 588 (643)
Q Consensus 583 ~l~~~~ 588 (643)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 60
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=3.7e-24 Score=201.02 Aligned_cols=158 Identities=23% Similarity=0.383 Sum_probs=132.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||++++.++.+...+.||++..+.. .+...+....+.+||++|++.+..+ +..+++.+|++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhh--hhhhcccCCEEEE
Confidence 699999999999999999999999988888888876653 3456655667889999999988777 6678899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.+|+.+. .|+..+....+ +.|+++|+||+|+.... ...+++..+++..+..++++
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999999997 48888876543 78999999999986531 12556777888888545999
Q ss_pred eeeccC-CHHHHHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~~ 588 (643)
|||++| |++++|+.+++++
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 999999 9999999998864
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=6.5e-24 Score=198.23 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|+|+++++...+.||.+.++....+...+....+.+||++|++.+..+ +..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--RNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--HHHHhccCCEEEE
Confidence 58999999999999999999999988888788888777777877777778889999999888776 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|||++++.+|+.+..|+..+.+..... ..+.|+++|+||+|+..+.. ..+....+++..++. ++++||++| |+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 157 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE 157 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 999999999999999999988765420 01689999999999974332 356666788888865 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|++|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=6.8e-24 Score=197.70 Aligned_cols=160 Identities=23% Similarity=0.380 Sum_probs=137.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||++++.++.+...+.+|.+.++....+...+....+.+||++|++.+..+ +...++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--TQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence 489999999999999999999999888777777776677777777755567889999999888776 678889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+...++++.++...++++||++| |++++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGAS---NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHH
Confidence 999999999999999999998765432 7899999999999765433 567788888888766899999999 99999
Q ss_pred HHHHHHH
Q 006490 581 FSRIIWA 587 (643)
Q Consensus 581 ~~~l~~~ 587 (643)
|+.+.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9999864
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=8.7e-24 Score=196.96 Aligned_cols=160 Identities=19% Similarity=0.362 Sum_probs=137.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||++++++..+...+.||.+.++....+..++....+.+||++|++.+..+ ...+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI--TSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHCCCCEEE
Confidence 479999999999999999999999988888888887777777777765567889999999888877 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+.+.... +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l 156 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEEA 156 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999999999999999998776542 6899999999999764433 55677788777775 999999999 99999
Q ss_pred HHHHHHHH
Q 006490 581 FSRIIWAA 588 (643)
Q Consensus 581 ~~~l~~~~ 588 (643)
|+.+.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998754
No 64
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=9.2e-24 Score=199.84 Aligned_cols=163 Identities=13% Similarity=0.251 Sum_probs=136.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------CCcEEEEEEecCCchhhhhhhcc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN 491 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~----------g~~~~~~i~d~~g~~~~~~~~~~ 491 (643)
..+||+++|++|||||||++++.+..+...+.+|.+.++....+... +....+.+||++|++.+..+ +
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--T 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH--H
Confidence 35899999999999999999999999988887887766655444332 24567789999999988877 7
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEe
Q 006490 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v 570 (643)
..+++++|++++|||++++.||+.+..|+..+....... +.|+++|+||+|+.+.+.. .+.+.++++.++++ ++++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~ 157 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE--NPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFET 157 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEE
Confidence 788999999999999999999999999999887654322 7899999999999764433 56788899999986 9999
Q ss_pred eeccC-CHHHHHHHHHHHHh
Q 006490 571 SMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~ 589 (643)
||++| |++++|+.|.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999 99999999998654
No 65
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=8.7e-24 Score=197.58 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=137.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|++|||||||+++++++.+...+.||++.++....+...|....+.+||++|++.+..+ +..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--ASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--HHHHhcCCCEEEEE
Confidence 7999999999999999999999998888889888777777777766778889999999998887 77889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc---cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
||++++.+++.+..|+..+.+..... ..|+++|+||+|+.+... ..+....++++++.. ++++||++| |++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~l 156 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREF 156 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 99999999999999999886654322 578999999999865433 245566778888875 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|+.+++.+.
T Consensus 157 f~~l~~~~~ 165 (170)
T cd04108 157 FFRVAALTF 165 (170)
T ss_pred HHHHHHHHH
Confidence 999998774
No 66
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=3.1e-24 Score=199.50 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=127.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||+++++.+.+...++++.+. ......++...+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999887765554432 2233344555678899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+... ..++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.|+.++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence 9999999999884 88777653 357999999999998764443 2333455666665 479999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=3.9e-24 Score=199.48 Aligned_cols=160 Identities=23% Similarity=0.320 Sum_probs=130.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||+++|+++.|...++++.+... ....+....+.+.+|||||++.+......+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999998777665444332 2234555678899999999999888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+. .|++.++.. .++.|+++|+||+|+...... . .+....+++..+ .++++|||++|.||+++|
T Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQRDV-T-YEEAKQFADENG--LLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 9999999999998 488887664 357899999999999766544 3 344566666654 379999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
..+.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99887653
No 68
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=1.1e-23 Score=202.35 Aligned_cols=161 Identities=24% Similarity=0.380 Sum_probs=140.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+++|.+..+...+.||.+.++....+++.|....+.+||++|++.+..+ +..+++.+|++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI--TSTYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH--HHHHhCCCcEE
Confidence 4689999999999999999999999988777788887777778888866677889999999888777 67888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+|+.+..|+..+..... ..|+++|+||+|+...... .+....+++..++. ++++||++| |+++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~~ 157 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD----DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVEE 157 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHHH
Confidence 999999999999999999998877543 7899999999999765443 56677788888876 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|++|.+.+.
T Consensus 158 lf~~l~~~~~ 167 (199)
T cd04110 158 MFNCITELVL 167 (199)
T ss_pred HHHHHHHHHH
Confidence 9999999775
No 69
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=1e-23 Score=203.73 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=136.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+|+|.+|||||||+++|.++.+...|.||....+.. .+...+....+.+||++|++.+..+ +..+++.+|++|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~~~~v~L~iwDt~G~e~~~~l--~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEIDKRRIELNMWDTSGSSYYDNV--RPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEECCEEEEEEEEeCCCcHHHHHH--hHHhccCCCEEEE
Confidence 689999999999999999999999998888998876653 4556666778889999999998887 7788999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.+|+.+. .|...+....+ +.|+|+|+||+|+... ....++...++++++..++++
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCP----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 99999999999985 57777665543 7999999999999652 123568889999999756999
Q ss_pred eeeccC-C-HHHHHHHHHHHHhCC
Q 006490 570 VSMKSK-D-LNNVFSRIIWAAEHP 591 (643)
Q Consensus 570 vSa~~g-~-i~~l~~~l~~~~~~~ 591 (643)
|||+++ + ++++|+.++.++...
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHHHHhc
Confidence 999997 5 999999999977543
No 70
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=1.2e-23 Score=197.09 Aligned_cols=164 Identities=16% Similarity=0.291 Sum_probs=138.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~ 81 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL--RTPFYRGSDCC 81 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh--HHHHhcCCCEE
Confidence 4589999999999999999999999888777777776666666667766778889999999988887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+|+.+..|...+....... ..+.|+++|+||+|+.......+++.++++.++..+++++||++| |+.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999998887654321 126899999999999754444677888999888766999999999 9999
Q ss_pred HHHHHHHH
Q 006490 580 VFSRIIWA 587 (643)
Q Consensus 580 l~~~l~~~ 587 (643)
+|+.+++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999864
No 71
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=4.7e-24 Score=198.54 Aligned_cols=159 Identities=25% Similarity=0.359 Sum_probs=128.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
++||+++|++|||||||+++++.+.+...++++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888876655544432 233445555778899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+... ..+.|+++|+||+|+...... . .+....+++.++ .+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV-G-KEQGQNLARQWG--CAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE-c-HHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence 9999999999874 77777542 358999999999999765443 2 233456666665 379999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+++.+.+
T Consensus 156 ~~l~~~l 162 (164)
T cd04175 156 YDLVRQI 162 (164)
T ss_pred HHHHHHh
Confidence 9998754
No 72
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=7.2e-24 Score=206.10 Aligned_cols=161 Identities=16% Similarity=0.273 Sum_probs=137.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+++|.+|||||||+++++.+.+...+.||.+.++....+...++..++.+||++|++.+..+ +..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--RDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHcccccE
Confidence 45689999999999999999999999988888888887766666666656678889999999988877 6778999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
+|+|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.......+.. .+++..++. +++|||++| |+++
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~ 162 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEK 162 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHH
Confidence 9999999999999999999999987643 79999999999996543333344 667777776 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|++|++.+.
T Consensus 163 ~f~~l~~~~~ 172 (219)
T PLN03071 163 PFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 73
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.3e-23 Score=204.22 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=131.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+++|++|||||||+++++.+.+...+.++.+... .........+.+.+|||+|++.+...+..+++.+|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 37789999999999999999999999988776555554433 2233345568999999999999988889999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|+|||++++.+++.+. .|++.+++.+.++|++|||||+|+.... + .. +.. .+....+ .++++|||++|.||++
T Consensus 90 ilvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~~-v-~~-~~~-~~~~~~~--~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KA-KQV-TFHRKKN--LQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhcc-C-CH-HHH-HHHHhcC--CEEEEcCCCCCCCHHH
Confidence 9999999999999997 5999998877889999999999986432 2 12 222 3444433 3699999999999999
Q ss_pred HHHHHHHHHhCC
Q 006490 167 VFYYAQKAVLHP 178 (643)
Q Consensus 167 l~~~i~~~~~~~ 178 (643)
+|+++.+.+...
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999988643
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=1.5e-23 Score=195.88 Aligned_cols=161 Identities=19% Similarity=0.322 Sum_probs=138.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+|+|++|||||||++++++.++...+.+|.+.++....+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~il 81 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGAL 81 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEE
Confidence 489999999999999999999999988888777777777777777766668889999999888777 678889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+++.+..|+..+...... +.|+++|+||+|+..... ..+..+.++...++. ++++||+++ |++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEEA 157 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999999999999999999988775432 799999999999975433 356777888888876 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|..+.+.+.
T Consensus 158 ~~~~~~~~~ 166 (168)
T cd01866 158 FINTAKEIY 166 (168)
T ss_pred HHHHHHHHH
Confidence 999988763
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.4e-23 Score=203.06 Aligned_cols=162 Identities=20% Similarity=0.347 Sum_probs=139.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
.+||+|+|++|||||||+++|+++.+...+.||++.++....+.+. |....+.+||++|++.+..+ +..+++.+|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--TRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--HHHHhcCCcEE
Confidence 4799999999999999999999999988888888877777777664 44567889999999988877 67889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.||+.+..|+..+.+..... ..|+++|+||+|+...+.. .+....+++.+++. ++++||++| |+++
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~--~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e 156 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQPH--RPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEE 156 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence 99999999999999999999987664433 6789999999999764443 66788899999965 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|+.|.+.+.
T Consensus 157 ~f~~l~~~~~ 166 (211)
T cd04111 157 AFELLTQEIY 166 (211)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 76
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-24 Score=194.52 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=140.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
....-.+||+++|++|||||-|+.||+.+.|..+...+.+... ....++++.++.+||||+|+++|...+..++++|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 3455678999999999999999999999999877555444433 55677788899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
++++|||++.+.+|+++. +|+.+++.+. ++++++|||||+||.+.+.+ ..+....+++..+ ..++++||..+.|
T Consensus 89 GAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~--l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEG--LFFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcC--ceEEEeccccccc
Confidence 999999999999999988 6999999875 79999999999999987666 3444566666655 2599999999999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
|.+.|..++..+.
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877664
No 77
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=1e-23 Score=196.43 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=132.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+ ....+..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--RDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--cHHHhcCCCEEEE
Confidence 48999999999999999999988877777777776665555566656678889999999887776 6678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
|||++++.+|+.+..|+..+..... ++|+++|+||+|+.... ......++++..++. ++++||++| |++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRK-VKAKQITFHRKKNLQ-YYEISAKSNYNFEKPFL 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhccccc-CCHHHHHHHHHcCCE-EEEEeCCCCCChHHHHH
Confidence 9999999999999999999987754 79999999999997433 333344566665555 999999999 9999999
Q ss_pred HHHHHHhC
Q 006490 583 RIIWAAEH 590 (643)
Q Consensus 583 ~l~~~~~~ 590 (643)
+|++.+.+
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99988753
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=1.3e-23 Score=200.87 Aligned_cols=168 Identities=19% Similarity=0.225 Sum_probs=130.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccHHhhcc
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALAS 497 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~~ 497 (643)
+||+|+|++|||||||+++++++++...+.||++.+.....+...|....+.+||++|.+.+... .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 48999999999999999999999998888888876655555666655567789999986433211 013355789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHH-HhCCCCcEEeeeccC
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQ-ELGIEPPIPVSMKSK 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~-~~~~~~~~~vSa~~g 575 (643)
||++++|||++++.||+.+..|+..+.+.......++|+++|+||+|+...+.. .+....++. ..+++ +++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG-YLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCc-EEEecCCCC
Confidence 999999999999999999999998887654211117999999999999664433 445555654 44665 999999999
Q ss_pred -CHHHHHHHHHHHHhCCC
Q 006490 576 -DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~ 592 (643)
|++++|+.+++.+..+.
T Consensus 160 ~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 160 WHILLLFKELLISATTRG 177 (198)
T ss_pred CCHHHHHHHHHHHhhccC
Confidence 99999999999886444
No 79
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.4e-24 Score=180.32 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=143.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
--+||+++|..|||||.|++++..+-|++....|++.++.++++.+.|...++.||||+|++++.++ +..+++.|+++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--tqsyyrsahal 83 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--TQSYYRSAHAL 83 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--HHHHhhhcceE
Confidence 4589999999999999999999999998877789999999999999999999999999999999999 89999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++-..||+-+.+|+.++.++... +.--|+|+||+|+.+.+++ .+..+++.+....- ++++||+.. |++.
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve~ 159 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVEK 159 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHHH
Confidence 9999999999999999999999988653 4456899999999887666 55667777775554 899999999 9999
Q ss_pred HHHHHHHHH
Q 006490 580 VFSRIIWAA 588 (643)
Q Consensus 580 l~~~l~~~~ 588 (643)
+|..++..+
T Consensus 160 lf~~~a~rl 168 (213)
T KOG0095|consen 160 LFLDLACRL 168 (213)
T ss_pred HHHHHHHHH
Confidence 999987754
No 80
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.9e-23 Score=199.34 Aligned_cols=163 Identities=21% Similarity=0.407 Sum_probs=137.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
+||+|+|++|||||||++++.+..+.. .+.+|++.++....+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV--THAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh--hHHHccCCCEEE
Confidence 489999999999999999999998764 45567776676666777766678889999999888776 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|+|++++.+|+.+..|+..+...... ++|+++|+||+|+...+.. .++...+++.++++ ++++||++| |++++
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l 154 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELA 154 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999999999999999988876532 6899999999999754333 56777888888875 999999999 99999
Q ss_pred HHHHHHHHhCCC
Q 006490 581 FSRIIWAAEHPH 592 (643)
Q Consensus 581 ~~~l~~~~~~~~ 592 (643)
|++|.+.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (191)
T cd04112 155 FTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHhc
Confidence 999999876443
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=4.9e-24 Score=200.53 Aligned_cols=162 Identities=25% Similarity=0.391 Sum_probs=129.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
|+|+|++|||||||+++++++.+...+.++.... .....++...+.+.+|||||++.+....+.+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6899999999999999999998876644433222 223344555678999999999999888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
++.+++.+...|.+.+....+++|+++|+||+|+...... ....+....+++.++. ..+++|||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA-VKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC-cEEEEecCCCCCC
Confidence 9999999976799999887789999999999998753210 0123345567777763 3699999999999
Q ss_pred hhHHHHHHHHHHhC
Q 006490 164 VPDVFYYAQKAVLH 177 (643)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (643)
|+++|+.+++.++.
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 82
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=1.2e-23 Score=197.42 Aligned_cols=157 Identities=21% Similarity=0.353 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+.+++++.+...+.||....+. ..+...+....+.+|||+|++.+..+ +..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhcCCCCEEEE
Confidence 68999999999999999999999998888888765443 34456656677889999999988877 6778899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.||+.+. .|+..+..... +.|+++|+||+|+.+.+ ...++...+++.++..++++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999999986 58887766533 79999999999996432 22667788899998656999
Q ss_pred eeeccC-CHHHHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~ 587 (643)
|||++| |++++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 999999 999999998864
No 83
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=8.3e-24 Score=197.06 Aligned_cols=157 Identities=23% Similarity=0.270 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
++||+++|++|||||||+++++++.+...+.++.+ .+..........+.+.+|||+|++.+......+++.+|++|+||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999988666433333 33333344556788999999999999888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|++++.+++.+.. |+..++.. .+++|+++|+||+|+...+.. .. +....+...++ ..+++|||++|.|+++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV-SS-NEGAACATEWN--CAFMETSAKTNHNVQE 155 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee-cH-HHHHHHHHHhC--CcEEEeecCCCCCHHH
Confidence 9999999999884 77777653 257999999999999764443 22 23344555554 3689999999999999
Q ss_pred HHHHHHH
Q 006490 167 VFYYAQK 173 (643)
Q Consensus 167 l~~~i~~ 173 (643)
+|+++..
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=1.9e-23 Score=193.81 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=131.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++++++.+...+.++...+.....+...+....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM--HASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhCCCCEEEE
Confidence 58999999999999999999999887777666655555555566655667789999999998887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
|||++++.+++.+..|+..+.+... +.|+++|+||+|+... .......+++..+++ ++++||++| |++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRP----EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQ 151 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence 9999999999999999999876543 7899999999998542 233445666667765 999999999 9999999
Q ss_pred HHHHHHhC
Q 006490 583 RIIWAAEH 590 (643)
Q Consensus 583 ~l~~~~~~ 590 (643)
.+++.+..
T Consensus 152 ~l~~~~~~ 159 (161)
T cd04124 152 DAIKLAVS 159 (161)
T ss_pred HHHHHHHh
Confidence 99987753
No 85
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1.5e-23 Score=194.99 Aligned_cols=159 Identities=22% Similarity=0.350 Sum_probs=132.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++++++.+...+.+|... +....+..+|....+.+||++|++.+..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccch--HHHHHhhCCEEEE
Confidence 69999999999999999999999988877777653 44556666765667789999999988887 7778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+++..|+..+.+..... ++|+++|+||+|+...... ......+++.++.+ ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYE--KVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSAKSKTMVNELF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHH
Confidence 999999999999999998887754323 7999999999998654333 44567777777774 999999999 999999
Q ss_pred HHHHHHH
Q 006490 582 SRIIWAA 588 (643)
Q Consensus 582 ~~l~~~~ 588 (643)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998653
No 86
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=1.1e-23 Score=203.29 Aligned_cols=159 Identities=25% Similarity=0.287 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+||+|+|++|||||||+++|+.+.|....+++..... ......+.+.||||+|++.+......+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999988654333222111 1123567899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC-------------------CCccchhhhhhhHHHHhhccc---
Q 006490 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI--- 150 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~-------------------~~~~~~~~~~~~~~~~~~~~~--- 150 (643)
+++.+++.+...|....+....+.|+|||+||+|+.. .+.+ ..+....++++++..
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence 9999999998644444443445799999999999875 2222 334566777776532
Q ss_pred ---------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 151 ---------ETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 151 ---------~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
.+|++|||++|.||+++|+.+++.+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999998764
No 87
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=1.5e-23 Score=199.70 Aligned_cols=161 Identities=21% Similarity=0.299 Sum_probs=133.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+|+|++|||||||+++|.++.+...+.||....+. ..+..++....+.+||++|++.+..+ +..+++.+|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRL--RSLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhcccc--ccccccCCCEEEEE
Confidence 7999999999999999999999998888888776554 34555656678889999999988777 66788999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCCcEEe
Q 006490 505 YDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 505 ~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~v 570 (643)
||++++.||+.+. .|+..+..... +.|+++|+||+|+..... ..++...+++..+..++++|
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~~----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHCP----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999999886 58888876543 799999999999976432 13445677777775459999
Q ss_pred eeccC-CHHHHHHHHHHHHhCCC
Q 006490 571 SMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
||++| |++++|++|++.+..+.
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhccc
Confidence 99999 99999999999887554
No 88
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=2.1e-23 Score=193.74 Aligned_cols=157 Identities=17% Similarity=0.333 Sum_probs=134.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC--CCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~--g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+||+++|++|||||||++++.++.+...+.+|.+.++....+... +...++.+||++|++.+..+ +..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh--HHHHhcCCCEE
Confidence 489999999999999999999998887777887776655555555 56678889999999988887 67889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+|+.+..|+..+..... ++|+++|+||+|+..+... .++...+++.++++ ++++||++| |+++
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 153 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECG----DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTE 153 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 999999999999999999988876543 7999999999999765443 56778888888885 999999999 9999
Q ss_pred HHHHHHHH
Q 006490 580 VFSRIIWA 587 (643)
Q Consensus 580 l~~~l~~~ 587 (643)
+|++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998753
No 89
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=1.9e-23 Score=199.09 Aligned_cols=161 Identities=19% Similarity=0.333 Sum_probs=136.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+|+|.+|||||||++++.++.+...+.||++..+ ...+.+++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~ii 81 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM--RDQYMRTGQGFL 81 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh--HHHHhhcCCEEE
Confidence 58999999999999999999999998888878877655 344556666677889999999998887 678899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+...... ......+++.++++ ++++||++| |++++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKD--RVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDEA 158 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence 9999999999999999999887764433 7899999999998654333 45667777788875 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|++|++.+.
T Consensus 159 ~~~l~~~l~ 167 (189)
T PTZ00369 159 FYELVREIR 167 (189)
T ss_pred HHHHHHHHH
Confidence 999998775
No 90
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=2e-23 Score=194.25 Aligned_cols=160 Identities=20% Similarity=0.401 Sum_probs=133.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+|+|++|||||||++++++..+...+.+|+++.+ ...+..++....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAM--RDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhCCEEEE
Confidence 4899999999999999999999998888878777544 344555655667889999999988877 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|...+.+..... +.|+++|+||+|+...+.. .+....+++..+.+ ++++||++| |++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRD--DVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHH
Confidence 999999999999999988877654433 7899999999999764433 55677788888865 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
++|++.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 91
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.5e-23 Score=198.17 Aligned_cols=160 Identities=23% Similarity=0.328 Sum_probs=137.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+...|....+.+||++|++.+..+ +...++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL--NNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh--HHHHccCCCEEEE
Confidence 48999999999999999999999988777788877777777777766667889999999888776 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|..+..|+..+...... +.|+++|+||+|+.+.... .+....+++..+++ ++++||++| |++++|
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f 154 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAF 154 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 99999999999999999998876432 6899999999999865443 55667788888885 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
++|.+.+.
T Consensus 155 ~~l~~~~~ 162 (188)
T cd04125 155 ILLVKLII 162 (188)
T ss_pred HHHHHHHH
Confidence 99999875
No 92
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=1.5e-23 Score=199.97 Aligned_cols=161 Identities=21% Similarity=0.341 Sum_probs=133.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+|+|.+|||||||+++|+++.+...+.||+++.+. ..+...|....+.+||++|++.+..+ +..+++.+|++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTAL--RDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHHhCCEEEEE
Confidence 5899999999999999999999988888788776553 34456655567889999999988887 67889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
||++++.||+.+..|+..+.........+.|+++|+||+|+...+.. ......+++.+++. ++++||++| |++++|+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY 156 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence 99999999999999998887654321127899999999999754433 45567788888875 999999999 9999999
Q ss_pred HHHHHHh
Q 006490 583 RIIWAAE 589 (643)
Q Consensus 583 ~l~~~~~ 589 (643)
++++.+.
T Consensus 157 ~l~~~l~ 163 (190)
T cd04144 157 TLVRALR 163 (190)
T ss_pred HHHHHHH
Confidence 9998764
No 93
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=2.9e-23 Score=193.17 Aligned_cols=160 Identities=19% Similarity=0.379 Sum_probs=133.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||++++++..+...+.+|++..+ .....+.|....+.+||++|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM--REQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHH--HHHHHhhCCEEE
Confidence 37999999999999999999999988777777777544 344556655567889999999988887 678899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+.+..... +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |++++
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l 155 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDRD--EFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVDKA 155 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHHHH
Confidence 9999999999999999998887654333 7899999999999765433 45677788888875 999999999 99999
Q ss_pred HHHHHHHH
Q 006490 581 FSRIIWAA 588 (643)
Q Consensus 581 ~~~l~~~~ 588 (643)
|+.|++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 94
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.3e-23 Score=202.17 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=130.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+||+|+|++|||||||+++|+++.+...+.++.+... ....+. ...+.+.+|||||++.+...+..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988766555444222 223344 5578899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
||++++.+++.+. .|...+... ..++|++||+||+|+...... ..+.+..+++..+ ...++++||++|.||
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG-FIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC-CceEEEEeCCCCCCH
Confidence 9999999999997 588877642 257899999999999754333 3345677777765 236999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 006490 165 PDVFYYAQKAVLHP 178 (643)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (643)
+++|+++.+.+...
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.91 E-value=1.2e-23 Score=195.89 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=127.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|++..+...+.++.+... .........+.+.+|||+|.+.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998766544443221 12223345688999999999988888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+. .|.+.+.... .+.|+++|+||+|+...... . .+....+.+.++ .+++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDERVV-S-SERGRQLADQLG--FEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCccccc-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 999999999987 5999987654 47899999999999765543 2 334455666655 2699999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (165)
T cd01865 157 RLVDIIC 163 (165)
T ss_pred HHHHHHH
Confidence 9987643
No 96
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=2.5e-23 Score=193.04 Aligned_cols=158 Identities=21% Similarity=0.382 Sum_probs=135.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+|+|++|||||||+++|++.++...+.++.+..+....+.+++....+.+||++|++.+..+ +...++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--TRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--HHHHhcCCCEEEE
Confidence 58999999999999999999999988877777777676677777766677889999999888776 6788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+...... .+....+++..++. ++++||+++ |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 99999999999999999888665432 7999999999999764433 66778888888866 999999999 999999
Q ss_pred HHHHHH
Q 006490 582 SRIIWA 587 (643)
Q Consensus 582 ~~l~~~ 587 (643)
+++++.
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 97
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.1e-23 Score=194.16 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=120.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+||+++|++|||||||+++++.+.|...++++.+.......+++..+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999998887765554444433344555567899999999864 3567889999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCC--CCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
+++.+++.+.. |++.+.... ++.|+++|+||+|+.. .+.+ ..+..+.++++.+. ..+++|||++|.||+++|
T Consensus 76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF 151 (158)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence 99999999985 888887654 5789999999999853 2333 33344566666543 369999999999999999
Q ss_pred HHHHHH
Q 006490 169 YYAQKA 174 (643)
Q Consensus 169 ~~i~~~ 174 (643)
+.+.+.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 988754
No 98
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=1.5e-23 Score=195.75 Aligned_cols=160 Identities=17% Similarity=0.284 Sum_probs=130.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||++++++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999999998777555444332 2234445567899999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+.. |++.+.... .+.|+++|+||+|+...... ..+....+...++ .+++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG--IKFLETSAKANINVEEAF 157 (167)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99999999999884 999887653 47899999999999865443 2233455666654 369999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
+++.+.+.
T Consensus 158 ~~i~~~~~ 165 (167)
T cd01867 158 FTLAKDIK 165 (167)
T ss_pred HHHHHHHH
Confidence 99998764
No 99
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.91 E-value=9.8e-25 Score=172.22 Aligned_cols=88 Identities=65% Similarity=1.075 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCC-CCCCCCCCC
Q 006490 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPD 305 (643)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~-p~~~~~~~~ 305 (643)
+.+++..+++++++++++..|.++...|||++||++|+++|+++||+|++|+|||+|||+|+|.|.++++ | .++++|+
T Consensus 1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p-~l~v~~~ 79 (89)
T PF08356_consen 1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP-KLDVPPD 79 (89)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC-CccCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999 6 8999999
Q ss_pred CceecchhHH
Q 006490 306 QSVELASEAV 315 (643)
Q Consensus 306 ~~~~ls~~~~ 315 (643)
+++|||+.|+
T Consensus 80 ~svELS~~gy 89 (89)
T PF08356_consen 80 QSVELSPEGY 89 (89)
T ss_pred CeeecCcCcC
Confidence 9999999873
No 100
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=3.2e-23 Score=193.08 Aligned_cols=160 Identities=19% Similarity=0.324 Sum_probs=129.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++++++.+...+.||....+ ...+...+....+.+||++|++.+..+ +..+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAM--QRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHH--HHHHhhcCCEEEE
Confidence 6899999999999999999999998877777766544 333444545667889999999988876 6678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+.+.......+.|+++|+||+|+...+.. .+....++...++. +++|||++| |++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f 157 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence 999999999999999988776653321127999999999999764333 45566777777775 999999999 999999
Q ss_pred HHHHHH
Q 006490 582 SRIIWA 587 (643)
Q Consensus 582 ~~l~~~ 587 (643)
++|+..
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999754
No 101
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=1e-23 Score=201.12 Aligned_cols=160 Identities=23% Similarity=0.357 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
||+++|++|||||||+++|+.+.|...++++.+.. .....+++..+.+.+|||||++++...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 69999999999999999999988877655544432 23334445567799999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
+++.+++.+.. |...+... ..+.|+++|+||+|+.....+ .. .....+...++ .+++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV-ST-EEGAALARRLG--CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 99999999884 88777553 247899999999999765444 32 33456666665 369999999999999999
Q ss_pred HHHHHHHhCC
Q 006490 169 YYAQKAVLHP 178 (643)
Q Consensus 169 ~~i~~~~~~~ 178 (643)
+++.+.+...
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999877533
No 102
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.91 E-value=1.4e-23 Score=194.65 Aligned_cols=157 Identities=17% Similarity=0.262 Sum_probs=127.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++++++.|.+.+.++.+... ....+....+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988766444443322 23344445678999999999998888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+. .|++.+.... .+.|+++|+||+|+...+.+ . .+....+++.++ .++++|||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQV-G-DEQGNKLAKEYG--MDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 999999999998 5999887654 37899999999999766554 2 344566666665 4799999999999999999
Q ss_pred HHHHH
Q 006490 170 YAQKA 174 (643)
Q Consensus 170 ~i~~~ 174 (643)
++.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 98764
No 103
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=199.78 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=131.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+||+|+|++|||||||++++.++.+...+.++.+. ......++...+.+.+|||||++++..++..+++.+|++|+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 34689999999999999999999999887665444333 22334556667889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+.. |...+.+. ..+.|+++|+||+|+.....+ . .+....+.+.++ .+++++||++|.||.+
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV-S-TGEGQELAKSFG--IPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHhC--CEEEEeeCCCCCCHHH
Confidence 999999999999984 88877654 247899999999998755443 2 233455556554 3699999999999999
Q ss_pred HHHHHHHHHhC
Q 006490 167 VFYYAQKAVLH 177 (643)
Q Consensus 167 l~~~i~~~~~~ 177 (643)
+|.++.+.+..
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 104
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1.7e-23 Score=194.52 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=126.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
++||+++|++|||||||+++++.+.+...+.++.... .....+++..+.+.||||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998877655543322 233344455677899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++++.. |...+.+. ..++|+++|+||+|+...... .. .....+...++ .+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~-~~-~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV-SS-AEGRALAEEWG--CPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc-CH-HHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 9999999999974 87777653 258999999999998654433 22 23455555554 368999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9987653
No 105
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=1.9e-23 Score=193.79 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||++++++..+.+...++..... ....++...+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988666444322221 22344556788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
|++++.+++.+. .|+..+++..+++|+++|+||+|+... ..+....+.+..+ .+++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 999999999987 599999877778999999999998532 1122334444443 36899999999999999999
Q ss_pred HHHHHh
Q 006490 171 AQKAVL 176 (643)
Q Consensus 171 i~~~~~ 176 (643)
+.+.+.
T Consensus 153 l~~~~~ 158 (161)
T cd04124 153 AIKLAV 158 (161)
T ss_pred HHHHHH
Confidence 988765
No 106
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=4.9e-23 Score=200.55 Aligned_cols=190 Identities=18% Similarity=0.301 Sum_probs=143.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhc-cCCEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT 501 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~-~ad~i 501 (643)
+||+++|++|||||||+++|+++.+. ..+.++...++....+.+.+....+.+||++|++. .+ ...++. .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~--~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WT--EDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HH--HhHHhhcCCCEE
Confidence 48999999999999999999988876 56666665456666677776667788999999972 22 234556 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...... .++...++...++. ++++||++| |+++
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~ 153 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDE 153 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence 99999999999999999998887754322 7999999999999765443 45567788888875 999999999 9999
Q ss_pred HHHHHHHHHhCCCCCCCCcc---cccchhhhhhhhchhhHHHHH
Q 006490 580 VFSRIIWAAEHPHLNIPETE---TGRNRKRYRHLVNSSLVFVSV 620 (643)
Q Consensus 580 l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 620 (643)
+|+.+++.+........... ......|+..++.++...++.
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~ 197 (221)
T cd04148 154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGK 197 (221)
T ss_pred HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHH
Confidence 99999998864333322222 123344555556666655544
No 107
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=2e-23 Score=194.92 Aligned_cols=159 Identities=22% Similarity=0.268 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||+|.+.+......+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998766555443322 23344566788999999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
|++++.+++.+. .|...+.+.. .+.|+++|+||+|+...... ..+....+....+ .+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence 999999999987 5988887653 36899999999999753332 2334455666655 36999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.++
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 108
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=2.2e-23 Score=194.49 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=128.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||+++++++.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999887665444333222 2233445567899999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+.. |+..+.... ++.|+++|+||+|+...... . .+....+++.++ .+++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV-D-YSEAQEFADELG--IPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCcCHHHHH
Confidence 99999999999985 999887764 57899999999998765443 2 234456666654 379999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
..+.+.+.
T Consensus 157 ~~i~~~~~ 164 (166)
T cd01869 157 MTMAREIK 164 (166)
T ss_pred HHHHHHHH
Confidence 99988653
No 109
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=4.8e-23 Score=200.13 Aligned_cols=162 Identities=19% Similarity=0.331 Sum_probs=141.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+++|++..+...+.+|.+.++....+..+|....+.+||++|++.+..+ ...+++.+|++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--TSAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhCCCCEE
Confidence 5689999999999999999999999988777788888887777888766678889999999998887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+....++..++++ ++++||++| |+++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~~ 164 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADS---NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVEK 164 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCC---CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9999999999999999999988776432 7999999999999765444 56777888888876 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|+.+++.+.
T Consensus 165 lf~~l~~~i~ 174 (216)
T PLN03110 165 AFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 110
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=2e-23 Score=197.01 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=127.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|+++.|..++.++.+... ....+.+..+.+.+|||+|++.+...++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999998777655554332 23444555688999999999999989999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCC----ccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH----NATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|++++.+++++. .|+..+++..+ ..| |+|+||+|+.... .. ...+..+.+++.++ .++++|||++|.|++
T Consensus 81 D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~ 155 (182)
T cd04128 81 DLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAKAMK--APLIFCSTSHSINVQ 155 (182)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 999999999997 59998877543 455 7899999985321 11 12234456666666 369999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (182)
T cd04128 156 KIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 111
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=1.9e-23 Score=197.72 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=129.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc----------CCceeEEEEeCCCCCcchhhhHH
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE 78 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~ 78 (643)
..+||+++|++|||||||++++.+..+...+.++.+... ....+. ...+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 348999999999999999999999988766544443221 111111 34578999999999998888999
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
+++.+|++|+|||++++.++..+. .|+..+... .++.|+++|+||+|+...+.+ . .+....+++.++ .+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQRQV-S-EEQAKALADKYG--IPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcCcc-C-HHHHHHHHHHcC--CeEEEE
Confidence 999999999999999999999998 499888664 357899999999999765544 2 344577777776 379999
Q ss_pred CcccCCChhHHHHHHHHHHh
Q 006490 157 SATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||++|.|++++|+++.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 112
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=2.9e-23 Score=193.13 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||++++++..+...++++.+.. .....+.+..+.+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999988776655544432 233345555678999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+...... . .+....+++.++ .+++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV-S-REEGQELARKLK--IPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee-c-HHHHHHHHHHcC--CcEEEeeCCCCCCHHHHH
Confidence 9999999999875 77777543 357899999999999765443 2 233455666655 269999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9987653
No 113
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=3e-23 Score=192.50 Aligned_cols=158 Identities=20% Similarity=0.333 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+||+++|++|||||||+|+|+++.+...+.++.+.. .....++...+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3799999999999999999999998877655544432 233344555677899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+.+. ..++|+++|+||+|+... .. .......+.+.++ .+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYG--IPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhC--CeEEEecCCCCCCHHHHH
Confidence 9999999999874 77766553 247899999999998753 22 2333455555555 369999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9988653
No 114
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.6e-23 Score=197.90 Aligned_cols=157 Identities=28% Similarity=0.399 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCC-----CCCCCCCCC---CeeeC--------CcccCCceeEEEEeCCCCCcchh
Q 006490 12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLP--------PDFYPDRVPVTIIDTSSSLENKG 74 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n-~l~~~~~-----~~~~~~~~~---~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~ 74 (643)
.+||+++|++|||||||+. ++.++.+ ...+.++.+ ..... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 6665433 333333332 11111 13456678999999999875 2
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC-------------------Cccch
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------------------HNATS 135 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~-------------------~~~~~ 135 (643)
....+++++|++|+|||++++.+++.+...|.+.++..+++.|++||+||+|+... +.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V-- 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL-- 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence 45578999999999999999999999976699999877778999999999998642 222
Q ss_pred hhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHH
Q 006490 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
..+..+.++++++. +|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence 34556788888873 79999999999999999988764
No 115
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=3.1e-23 Score=193.05 Aligned_cols=159 Identities=20% Similarity=0.330 Sum_probs=127.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887765544432 22334455566889999999999998999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
++++.+++.+.. |...+.+. ..++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence 999999999874 77666443 247899999999999765433 2334455666655 4799999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
++.+.+.
T Consensus 156 ~l~~~~~ 162 (164)
T smart00173 156 DLVREIR 162 (164)
T ss_pred HHHHHHh
Confidence 9987653
No 116
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=2.6e-23 Score=193.68 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++++.+.+...+.++.+... .........+.+.+|||+|++.+......+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887665554443322 22233455688999999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
|++++.+++.+. .|...+.+.+.++|+++|+||+|+.... . . .+ ...+.+.. ...++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~-~-~~-~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDRK-V-K-AK-QITFHRKK--NLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhccccc-C-C-HH-HHHHHHHc--CCEEEEEeCCCCCChHHHHHH
Confidence 999999999997 5999998876689999999999997322 2 1 12 23333332 236999999999999999999
Q ss_pred HHHHHhC
Q 006490 171 AQKAVLH 177 (643)
Q Consensus 171 i~~~~~~ 177 (643)
+.+.+..
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988753
No 117
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=7.7e-23 Score=191.50 Aligned_cols=161 Identities=19% Similarity=0.329 Sum_probs=136.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-hhhccHHhhccCCEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT 501 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~ad~i 501 (643)
.+||+++|++|||||||++++++..+...+.+|.+.++....+.+++....+.+||++|++.+. .+ ...+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSM--VQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhh--HHHhhcCCCEE
Confidence 4799999999999999999999998887777777777777777788667788899999998775 34 56778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc---C-C
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS---K-D 576 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~---g-~ 576 (643)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...... .+....+++..++. ++++||++ + |
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~ 156 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPN--EVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDH 156 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCC--CCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCC
Confidence 99999999999999999999888765433 7999999999999765544 56777888888876 99999999 7 8
Q ss_pred HHHHHHHHHHHH
Q 006490 577 LNNVFSRIIWAA 588 (643)
Q Consensus 577 i~~l~~~l~~~~ 588 (643)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 118
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=5e-23 Score=196.04 Aligned_cols=160 Identities=23% Similarity=0.368 Sum_probs=133.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
+||+|+|++|||||||+++|+++.+...+.||+...+... +..+ +....+.+|||+|++.+..+ ...++++||+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRL--RPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHH--HHHhCCCCCEEE
Confidence 4899999999999999999999998877778777665443 4444 45667889999999988877 667889999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----ccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 503 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 503 lv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
+|||++++.||+.+. .|+..+..... +.|+++|+||+|+.... ...+...+++..++..+++++||++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCP----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 999999999999986 48877765433 78999999999986532 22667888899999855999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 006490 576 DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~ 590 (643)
|++++|..+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998753
No 119
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=2.9e-23 Score=197.68 Aligned_cols=164 Identities=25% Similarity=0.368 Sum_probs=130.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+|+|++|||||||+++|+++.+...+.++.+.. ....... ...+.+.+|||||++.+......+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876654433222 2222232 45678999999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC---ccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|++++.+++.+...|...+....+++|+++|+||+|+.... .. ...+..+.++..++. .+++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGA-FAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCC-cEEEEccCCCCCCHHHH
Confidence 99999999999767988887766789999999999986542 11 123455666666653 26899999999999999
Q ss_pred HHHHHHHHhCC
Q 006490 168 FYYAQKAVLHP 178 (643)
Q Consensus 168 ~~~i~~~~~~~ 178 (643)
|+.+.+.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 120
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=2.2e-23 Score=193.53 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=127.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
+||+++|++|||||||+++++++.+...+.++.+... ....+. ...+.+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999887666444333222 222233 557889999999999888889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|||++++.+++.+. .|...+.....++|+++|+||+|+.....+ . .+....+.+.++ .+++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQAVI-T-NEEAEALAKRLQ--LPLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccccCC-C-HHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence 99999999999987 599888877778999999999999765544 2 244556666665 379999999999999999
Q ss_pred HHHHHH
Q 006490 169 YYAQKA 174 (643)
Q Consensus 169 ~~i~~~ 174 (643)
+++...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 988653
No 121
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.91 E-value=7.6e-23 Score=189.76 Aligned_cols=159 Identities=19% Similarity=0.338 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|+|++..+...+.|+.+.++....+...+....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--TSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhCCCCEEEE
Confidence 58999999999999999999999887777788777777666666655677889999999888776 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
|+|++++.+|+.+..|+..+....... +.|+++|+||+|+.......+...++++..++. ++++||++| |++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNN--DIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQAFE 155 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCC--CCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHH
Confidence 999999999999999999888775544 799999999999985554566778888888876 999999999 9999999
Q ss_pred HHHHH
Q 006490 583 RIIWA 587 (643)
Q Consensus 583 ~l~~~ 587 (643)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98764
No 122
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=177.78 Aligned_cols=160 Identities=17% Similarity=0.253 Sum_probs=135.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+|+.|+|+..||||||+.++++..|.+.+-.+.+...+...+ ..+.+++++|||+|++.+...+..++++|+++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 4699999999999999999999999877654444443311122 23568899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||+++.+++..+.. |.-.+..++ .+.|+|||+||||+..++.+ ..+..+.+.+++|. .++|+||+.+.||.++|
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQVF 175 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHHH
Confidence 99999999999985 999998776 58999999999999887776 45667889999984 69999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
+.+...+-
T Consensus 176 e~lv~~Ic 183 (193)
T KOG0093|consen 176 ERLVDIIC 183 (193)
T ss_pred HHHHHHHH
Confidence 98887654
No 123
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=7.7e-23 Score=189.71 Aligned_cols=158 Identities=19% Similarity=0.348 Sum_probs=135.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++|++.++...+.++++.++....+..++....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL--IPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEEE
Confidence 38999999999999999999999988877788887777777877765667889999999888776 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+..... ..++...+++..+.. ++++||+++ |+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELF 154 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999988654322 599999999999954333 356677788888866 999999999 999999
Q ss_pred HHHHHH
Q 006490 582 SRIIWA 587 (643)
Q Consensus 582 ~~l~~~ 587 (643)
+++.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999864
No 124
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.90 E-value=4.6e-23 Score=197.93 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=132.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+|+|++|||||||+++|++..+...+.++.+... ....+.+..+.+.||||||++.+...+..+++.+|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 358999999999999999999999988665444333222 222334556789999999999888888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|||++++.+++.+. .|++.+.......|+++|+||+|+...... ..+....+...++ .+++++||++|.||.++|
T Consensus 85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence 99999999999997 599999887778999999999998765443 2344455666655 469999999999999999
Q ss_pred HHHHHHHhCC
Q 006490 169 YYAQKAVLHP 178 (643)
Q Consensus 169 ~~i~~~~~~~ 178 (643)
+++.+.++..
T Consensus 160 ~~l~~~~~~~ 169 (199)
T cd04110 160 NCITELVLRA 169 (199)
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 125
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=3.7e-23 Score=193.33 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
||+++|++|||||||+++++++.|...+.++.+... ....+.+..+.+.+|||||++++......+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999998777655443322 223344556789999999999998899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc-CC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
++++.+++.+. .|++.+.+. .+ +.|+++|+||+|+.........++....+..+++ .+++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ--AEYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHH
Confidence 99999999997 599887543 33 4679999999998654332123344556666665 3689999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
.+.+.+.
T Consensus 159 ~l~~~~~ 165 (170)
T cd04108 159 RVAALTF 165 (170)
T ss_pred HHHHHHH
Confidence 9988753
No 126
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.90 E-value=3.6e-24 Score=196.50 Aligned_cols=168 Identities=27% Similarity=0.410 Sum_probs=147.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+|++|||+.+||||+|+..++.+.|... .|++.+.+.....++ +..+.+.+|||+|+++|....+..+.++|++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 458999999999999999999999999888 566665666777774 888999999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
||++.++.+++++.++|+++++.++++.|+||||+|.|+..+. .. ...+....+++++|.. .|+|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeeeh
Confidence 9999999999999999999999999999999999999998542 11 2345568888888864 799999
Q ss_pred cccCCChhHHHHHHHHHHhCCCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~~~ 180 (643)
|++..|+.++|+.+++..+.+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999998876543
No 127
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.90 E-value=6.3e-23 Score=195.59 Aligned_cols=154 Identities=17% Similarity=0.268 Sum_probs=132.2
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC
Q 006490 429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS 508 (643)
Q Consensus 429 vG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s 508 (643)
+|.+|||||||+++++.+.+...+.||++.++....+.+.+....+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--RDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhcCCCEEEEEEECC
Confidence 699999999999999998888777788887777777777767778899999999999888 778999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490 509 DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 509 ~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~ 587 (643)
++.||+.+..|+..+.+... +.|+++|+||+|+.......+ ...+++..++. +++|||++| |++++|.+|++.
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~-~~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDVKDRKVKAK-SITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCHH-HHHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999987653 799999999999865332233 34677777876 999999999 999999999997
Q ss_pred HhC
Q 006490 588 AEH 590 (643)
Q Consensus 588 ~~~ 590 (643)
+..
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 753
No 128
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=5.6e-23 Score=193.31 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=131.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEE
Q 006490 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (643)
Q Consensus 426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~ 505 (643)
|+|+|++|||||||+++++++.+...+.+|....+. ..+..++....+.+||++|++.+..+ +...++++|++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRL--RPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchh--chhhcCCCCEEEEEE
Confidence 589999999999999999999998877777765543 34556655667889999999888776 667889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEEee
Q 006490 506 DSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 506 D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~vS 571 (643)
|++++.||+.+. .|+..+....+ +.|+++|+||+|+.... ...++...+++.++..++++||
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCP----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 999999999986 58888877544 79999999999997532 2245677889999975599999
Q ss_pred eccC-CHHHHHHHHHHHHh
Q 006490 572 MKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~ 589 (643)
|++| |++++|+.+++.+.
T Consensus 154 a~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 154 ALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999 99999999998775
No 129
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=8.4e-23 Score=189.68 Aligned_cols=159 Identities=25% Similarity=0.424 Sum_probs=141.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|+++||||||+++|.+..+...+.+|.+.+.....+...+....+.+||++|++.+..+ ....++++|++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL--RDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH--HHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 7999999999999999999999998888888877777777888777778889999999988877 66788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
||++++.||+.+..|+..+...... +.|+++|+||.|+...+.. .++++++++.++.. ++++||+++ |+.++|.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVP-YFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSE-EEEEBTTTTTTHHHHHH
T ss_pred ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhCCE-EEEEECCCCCCHHHHHH
Confidence 9999999999999999999988762 6899999999999874444 67889999999955 999999999 9999999
Q ss_pred HHHHHHh
Q 006490 583 RIIWAAE 589 (643)
Q Consensus 583 ~l~~~~~ 589 (643)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 130
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=4.1e-23 Score=200.77 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=129.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+||+|+|++|||||||+++|++..+...+.++.+... ....+.. ..+.+.||||+|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988776655444222 2223322 468899999999998888999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.+. .|...+.+.. .+.|+++|+||+|+...+.+ ..+....+.+.++ .++++|||++|.||+
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~--~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANG--MESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence 9999999999997 5999887653 24689999999999765544 3344566777665 368999999999999
Q ss_pred HHHHHHHHHHhCC
Q 006490 166 DVFYYAQKAVLHP 178 (643)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (643)
++|+++.+.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 131
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=4.1e-23 Score=194.21 Aligned_cols=161 Identities=23% Similarity=0.360 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||.+.+....+.+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999988766444332 222333444556778999999999888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
++++.+++.+...|.+.++...+++|+++|+||+|+.+... . ...+....+++.++. .++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKP-VTVEQGQKLAKEIGA-HCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCC-CCHHHHHHHHHHcCC-CEEEEecCCc
Confidence 99999999998779999877677899999999999865321 1 112344566666663 3689999999
Q ss_pred CCChhHHHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKAV 175 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~ 175 (643)
|.||+++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 132
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1e-23 Score=178.16 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=133.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
.--+||++||+.|||||+|+.+|+.+-|++....+.+... ..+.+.++.+++.||||+|++++.+.++.+++.||++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 3358999999999999999999999888666544444433 44567788999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||+++..+|+-+. .|+.++..+.. +.--||||||+|+.+.+++ ..+..+++++... .-++++||+.-.||+.
T Consensus 85 lvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qd--myfletsakea~nve~ 159 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQD--MYFLETSAKEADNVEK 159 (213)
T ss_pred EEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhh--hhhhhhcccchhhHHH
Confidence 999999999999998 49999988753 4556899999999876665 4455555655532 2479999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
||..+.-.+.
T Consensus 160 lf~~~a~rli 169 (213)
T KOG0095|consen 160 LFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 133
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=4.3e-23 Score=193.86 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=127.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||++++.++.|...++++... ......++...+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999998887776554322 22333444556789999999999988888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
++++.+++.+...|+..++...++.|+++|+||+|+.... .. ...+....+++.++ ...+++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~-~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKP-VSQSRAKALAEKIG-ACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCC-cCHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 9999999998767998888765689999999999986431 11 12334556666665 23699999999
Q ss_pred CCChhHHHHHHHH
Q 006490 161 MIQVPDVFYYAQK 173 (643)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (643)
|.||+++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 134
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=6.5e-23 Score=195.72 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=129.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+||+|+|++|||||||+++|++..+.. .++++.+... ....++...+.+.||||||+..+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 3343333222 2234455668899999999988888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++++.. |+..+.... .++|+++|+||+|+...+.. ..+....+...++ .+++++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYG--VPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99999999999984 998887765 37899999999999754443 2334566666665 379999999999999999
Q ss_pred HHHHHHHhCCC
Q 006490 169 YYAQKAVLHPT 179 (643)
Q Consensus 169 ~~i~~~~~~~~ 179 (643)
+++.+.+....
T Consensus 156 ~~l~~~~~~~~ 166 (191)
T cd04112 156 TAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHhc
Confidence 99999876543
No 135
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=1.5e-22 Score=188.45 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=130.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+||+++|++|||||||+++|.+. .+...+.+|++.++....+... +....+.+||++|++.+..+ ....++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM--VSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH--HHHHhCCCCE
Confidence 48999999999999999999864 5667777888776665555554 45678889999999888777 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+|..+..|+..+..... +.|+++|+||+|+.+.... ......+....+++ ++++||++| |++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 153 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASK----HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYE 153 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChH
Confidence 9999999999999999999988877642 6899999999999765433 34456667777766 999999999 999
Q ss_pred HHHHHHHHHH
Q 006490 579 NVFSRIIWAA 588 (643)
Q Consensus 579 ~l~~~l~~~~ 588 (643)
++|+.+++.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 136
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.90 E-value=1.2e-22 Score=200.29 Aligned_cols=172 Identities=19% Similarity=0.305 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++|+++++...+.||+.+ +....+.+.|....+.+|||+|++.+..+ ...++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLYSIRGEVYQLDILDTSGNHPFPAM--RRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEEEECCEEEEEEEEECCCChhhhHH--HHHHhccCCEEEE
Confidence 48999999999999999999999988877788764 45566777766677889999999888776 5667899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC------CCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHh-CCCCcEEeeeccC
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGE------DSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQEL-GIEPPIPVSMKSK 575 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~------~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~~vSa~~g 575 (643)
|||++++.||+.+..|..++..... ....++|+|+|+||+|+...+. ..++..+++... ++ +++++||++|
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~-~~~evSAktg 156 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC-AYFEVSAKKN 156 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence 9999999999999999888865421 0112789999999999975332 344555555433 34 4899999999
Q ss_pred -CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490 576 -DLNNVFSRIIWAAEHPHLNIPETE 599 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~~~~~~~~ 599 (643)
|++++|++|.+.+..|....|...
T Consensus 157 ~gI~elf~~L~~~~~~p~e~~~~~~ 181 (247)
T cd04143 157 SNLDEMFRALFSLAKLPNEMSPSLH 181 (247)
T ss_pred CCHHHHHHHHHHHhccccccCcccc
Confidence 999999999998866665544443
No 137
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=1.4e-22 Score=188.48 Aligned_cols=160 Identities=23% Similarity=0.403 Sum_probs=137.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||++++++..+...+.++.+.++....+...+....+.+||++|++.+... ....++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--TSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhCCCCEEEE
Confidence 58999999999999999999999887777677777777777788765667889999999888876 6788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+++.+..|+..+...... ++|+++|+||+|+..... ..+....+++..++. ++++||++| |+++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 99999999999999999988776532 799999999999876433 356677888888886 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
+.+.+.+.
T Consensus 155 ~~i~~~~~ 162 (164)
T smart00175 155 EELAREIL 162 (164)
T ss_pred HHHHHHHh
Confidence 99998763
No 138
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=5.8e-23 Score=191.42 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=126.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||+++|++..+.....++.+... .........+.+.+|||||++.+......+++.++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 37999999999999999999999987655433333222 3334445557899999999998888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+. +|+..++.... ++|+++|+||+|+...+.. . .+....++...+ .+++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TEEAKAFAEKNG--LSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccC-C-HHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 9999999999988 59998877654 5899999999999765443 2 333455555543 369999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+++...+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9988764
No 139
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=1.1e-22 Score=196.52 Aligned_cols=156 Identities=17% Similarity=0.296 Sum_probs=127.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+|+|.+|||||||+++|+++++.. +.||++.++....+ +...+.+||++|++.+..+ +..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGL--GSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhh--HHHHhccCCEEEE
Confidence 489999999999999999999999864 45676655443322 3456789999999988887 6778999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------ccc-cHHHHHHHHHHhC
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------------YTM-AVQDSARVTQELG 563 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-------------------~~~-~~~~~~~~~~~~~ 563 (643)
|||++++.||+.+..|+..+.+.... +.|+|+|+||+|+.. .+. ..++...++++.+
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~---~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANE---DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 99999999999999888777654322 689999999999965 122 2678888888876
Q ss_pred C-------------CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 564 I-------------EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 564 ~-------------~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
. .++++|||++| |++++|..+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 24999999999 99999999998764
No 140
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=1.1e-22 Score=194.64 Aligned_cols=159 Identities=18% Similarity=0.286 Sum_probs=133.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
+||+|+|++|||||||+++|+++.+.. .+.+|++..+....+..+|....+.+||++|++.+..+ ...+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM--SRIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHhhcCCCCEEE
Confidence 489999999999999999999998874 56678877777777888876677889999999888777 667788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc----c-cHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT----M-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~----~-~~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
+|||++++.+|+.+..|+..+..... +.|+++|+||+|+.... . ..+.+..++..++.. ++++||++| |
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 153 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLEE----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQN 153 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcCC----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence 99999999999999999998876533 78999999999986432 1 134566777777776 899999999 9
Q ss_pred HHHHHHHHHHHHh
Q 006490 577 LNNVFSRIIWAAE 589 (643)
Q Consensus 577 i~~l~~~l~~~~~ 589 (643)
++++|+.+.+.+.
T Consensus 154 v~~l~~~i~~~~~ 166 (193)
T cd04118 154 VDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999774
No 141
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=1.8e-22 Score=187.59 Aligned_cols=159 Identities=24% Similarity=0.368 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|++++.++...+.+|.+..+....+...+...++.+||++|++.+... +..+++.+|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--APMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhccCCEEEE
Confidence 79999999999999999999999987767778777777777778766678889999999888776 6678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|+|++++.+++....|+..+..... . +.|+++|+||+|+..... ..+....++..+++. ++++||++| |+.++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNAS-P--NIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELF 155 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-C--CCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 9999999999999999998877653 2 789999999999875333 355677788888865 999999999 999999
Q ss_pred HHHHHHH
Q 006490 582 SRIIWAA 588 (643)
Q Consensus 582 ~~l~~~~ 588 (643)
++|.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998865
No 142
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.90 E-value=7.9e-23 Score=191.05 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=128.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+|+|++|||||||++++++..+....+++.+... ....+......+.+|||||.+.+......+++.+|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999887666544433322 2234445567899999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+. .|+..++.. .+++|+++|+||+|+...... . .+....+....+ ..++++||+++.|++++|
T Consensus 84 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESRREV-S-YEEGEAFAKEHG--LIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 9999999999998 499888764 468999999999999755443 2 333455556554 369999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
.++.+.+.
T Consensus 159 ~~~~~~~~ 166 (168)
T cd01866 159 INTAKEIY 166 (168)
T ss_pred HHHHHHHH
Confidence 99887754
No 143
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=2.1e-22 Score=194.80 Aligned_cols=162 Identities=18% Similarity=0.304 Sum_probs=139.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+++|++..+...+.+|.+.++....+.+.+....+.+||++|++.+..+ +..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--~~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--TRSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCCEE
Confidence 4589999999999999999999999988888888887777777777766667889999999888776 67888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .++.+++++.++++ ++++||+++ |+++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~e 158 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE 158 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9999999999999999998887655432 7899999999999765433 56788889888886 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|+++++.+.
T Consensus 159 ~f~~l~~~~~ 168 (210)
T PLN03108 159 AFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 144
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=1e-22 Score=194.64 Aligned_cols=164 Identities=19% Similarity=0.239 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchh--------hhHHhhcc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR 82 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 82 (643)
+||+|+|++|||||||+++|+++.|...+.++.+... ....+.+..+.+.+|||||...+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988766544333221 2223444557899999999764321 12345789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
+|++|+|||++++.+++.+.. |.+.+... ..++|+++|+||+|+...+.+ ..+..+.+..+... .++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSWK-CGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhcC-CcEEEecC
Confidence 999999999999999999874 77777543 357999999999999765433 23334455433222 36999999
Q ss_pred ccCCChhHHHHHHHHHHhCCCC
Q 006490 159 TTMIQVPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~ 180 (643)
++|.||+++|+.+.+.+.....
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCC
Confidence 9999999999999988765443
No 145
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=3.5e-24 Score=177.45 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=144.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEe
Q 006490 428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (643)
Q Consensus 428 ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D 506 (643)
++|++++|||.|+-++-.+.|....- +|.+.++.-+.++.++...++.+|||+|++++.++ +..++++||+++++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--t~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--THAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--hHhhhcccceeeeeee
Confidence 68999999999999998887765443 68888999999999988999999999999999999 8999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHH
Q 006490 507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRI 584 (643)
Q Consensus 507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l 584 (643)
+.+..||+....|+.+|.++..+ ...+.+++||+|+..++.+ .++.+.+++.++++ ++++|||+| |++-.|-.|
T Consensus 80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHH
Confidence 99999999999999999988765 5788999999999775555 77899999999998 999999999 999999999
Q ss_pred HHHHhCCCCC
Q 006490 585 IWAAEHPHLN 594 (643)
Q Consensus 585 ~~~~~~~~~~ 594 (643)
.+.+.+....
T Consensus 156 a~~l~k~~~~ 165 (192)
T KOG0083|consen 156 AEELKKLKMG 165 (192)
T ss_pred HHHHHHhccC
Confidence 9987655444
No 146
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=6.1e-23 Score=191.24 Aligned_cols=159 Identities=17% Similarity=0.281 Sum_probs=126.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||+++|.++.+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999887666544333222 2233344457899999999988888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.. ..+....+++.++. ..++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 83 YDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEAF 158 (165)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHHH
Confidence 9999999999987 598888764 357899999999999765443 23344566666653 368999999999999999
Q ss_pred HHHHHH
Q 006490 169 YYAQKA 174 (643)
Q Consensus 169 ~~i~~~ 174 (643)
+++.+.
T Consensus 159 ~~l~~~ 164 (165)
T cd01864 159 LLMATE 164 (165)
T ss_pred HHHHHh
Confidence 998764
No 147
>PLN03110 Rab GTPase; Provisional
Probab=99.90 E-value=9.8e-23 Score=197.95 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=134.9
Q ss_pred CCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490 2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE 79 (643)
Q Consensus 2 ~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 79 (643)
+.+........+||+++|++|||||||+++|++..+...+.++.+... ....+....+.+.||||+|++++...+..+
T Consensus 2 ~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 81 (216)
T PLN03110 2 AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAY 81 (216)
T ss_pred CCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 333333344568999999999999999999999987655444333322 333445566889999999999998889999
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
++.+|++|+|||++++.+++.+. .|+..++... .+.|+++|+||+|+...+.. ..+....+...++ .+++++||
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~--~~~~e~SA 156 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEG--LSFLETSA 156 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcC--CEEEEEeC
Confidence 99999999999999999999987 5998887654 47999999999998765443 3344566666654 47999999
Q ss_pred ccCCChhHHHHHHHHHHhC
Q 006490 159 TTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~ 177 (643)
++|.|++++|+.+...+..
T Consensus 157 ~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 148
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=1.9e-22 Score=188.42 Aligned_cols=161 Identities=25% Similarity=0.396 Sum_probs=134.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||++++.++.+...+.+|++..+ ...+..++....+.+||++|++.+..+ ...+++.+|++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM--RELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhh--hHHHHhhCCEEEE
Confidence 6899999999999999999999998877778777544 455667766677889999999988887 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||++++.+++....|...+.+..... ++|+++|+||+|+...+.. .+....+++.++..+++++||++| |++++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999999999988887643333 7999999999999764433 456667778888555999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
+++.+.+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99998653
No 149
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=7.5e-23 Score=189.83 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=127.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+|+|++|||||||+++|++..+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999987666544433222 33344555678999999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.++..+. .|+..++.. .+++|+++|+||+|+...... ..+....+...++ ..++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 999999999988 488887654 468999999999999765443 2334455666665 4799999999999999999
Q ss_pred HHHHH
Q 006490 170 YAQKA 174 (643)
Q Consensus 170 ~i~~~ 174 (643)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd04113 156 KCARS 160 (161)
T ss_pred HHHHh
Confidence 98865
No 150
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=5.2e-23 Score=191.08 Aligned_cols=158 Identities=25% Similarity=0.382 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
||+++|++|||||||+++|.+..+...+.++.+... ....+....+.+.+||++|.+.+......+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999998877655543333 444555678889999999999888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
++++.+++.+. .|++.+....+ +.|++||+||+|+...+.+ ..+..+.++++++ .+++++||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence 99999999999 69999988776 6999999999998875554 3345678888887 47999999999999999999
Q ss_pred HHHHHh
Q 006490 171 AQKAVL 176 (643)
Q Consensus 171 i~~~~~ 176 (643)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 151
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=9.3e-23 Score=190.52 Aligned_cols=164 Identities=17% Similarity=0.174 Sum_probs=127.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
.|+.+||+++|++|||||||+++|+++.|. ..+.++.+... ....+.+..+.+.+||++|.+.+......+++++|+
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 367899999999999999999999999987 66555444322 223444556789999999999888888889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
+|+|||++++.+++.+. .|...+... .++|+++|+||+|+.+.... .....+.+++.++. ..++++||++|.|++
T Consensus 81 ~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 155 (169)
T cd01892 81 ACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGL-PPPLHFSSKLGDSSN 155 (169)
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCC-CCCEEEEeccCccHH
Confidence 99999999999998886 477766432 37999999999998654332 11223455666652 246999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++|+.+.+.+..
T Consensus 156 ~lf~~l~~~~~~ 167 (169)
T cd01892 156 ELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHhhC
Confidence 999999887653
No 152
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=3.3e-22 Score=187.58 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|++.+..+...+.+|...++....+.+++....+.+||++|++.+..+ +..+++++|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--GVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--HHHHhcCCCEEEE
Confidence 48999999999999999999999887777677776777777788866667789999999888776 6788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
|||++++.+++....|...+...... ...++|+++|+||+|+..+. ...+..+.+++..+..+++++||++| |++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999999888888876554331 11268999999999998432 23566778888888556999999999 99999
Q ss_pred HHHHHHHHhC
Q 006490 581 FSRIIWAAEH 590 (643)
Q Consensus 581 ~~~l~~~~~~ 590 (643)
++.+.+.+..
T Consensus 159 ~~~i~~~~~~ 168 (172)
T cd01862 159 FETIARKALE 168 (172)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 153
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.1e-23 Score=175.26 Aligned_cols=166 Identities=20% Similarity=0.293 Sum_probs=135.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
+...--+|++++|+.|.|||+|+.+|+.+++..+..-+.+... ..+.+..+.++++||||+|++++.+....++++|-
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 3344458999999999999999999999998776554444433 33455567899999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+.++|||++++++++.+.. |+..++... +++.+||++||.|+...+++ +..+.. .++++-. + .+.++||++|+|
T Consensus 84 GAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tflEAs-~FaqEne-l-~flETSa~TGeN 158 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEAS-RFAQENE-L-MFLETSALTGEN 158 (214)
T ss_pred ceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHHHHH-hhhcccc-e-eeeeeccccccc
Confidence 9999999999999999996 999998764 67889999999999998887 555543 3333322 2 589999999999
Q ss_pred hhHHHHHHHHHHhC
Q 006490 164 VPDVFYYAQKAVLH 177 (643)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (643)
|++.|-...+.++.
T Consensus 159 VEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 159 VEEAFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777653
No 154
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1.6e-22 Score=192.56 Aligned_cols=156 Identities=22% Similarity=0.326 Sum_probs=123.1
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCCcc--cceEEE-------EEEcCCCcEEEEEEecCCchhhhh
Q 006490 423 VFRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTG--EQYAVN-------VVDQPGGNKKTLILQEIPEEGVKK 487 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln-~l~~~~-----~~~~~~~t~~--~~~~~~-------~v~~~g~~~~~~i~d~~g~~~~~~ 487 (643)
.+||+++|.+|||||||++ ++.++. +...+.||+. +.+... .+..+|....+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 665543 3455667774 223222 124566677888999999875 2
Q ss_pred hhccHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-------------------
Q 006490 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP------------------- 547 (643)
Q Consensus 488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~------------------- 547 (643)
+ ...++++||++++|||++++.||+.+. .|+..+..... +.|+++|+||+||..
T Consensus 80 ~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccccchhhhccccccccccc
Confidence 3 445789999999999999999999997 59888876643 789999999999864
Q ss_pred -ccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490 548 -YTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~ 587 (643)
.....++++.+++++++. +++|||++| |++++|+.++++
T Consensus 154 ~~~V~~~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 154 ADILPPETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCccCHHHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHh
Confidence 122377899999999995 999999999 999999999874
No 155
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=179.83 Aligned_cols=165 Identities=15% Similarity=0.258 Sum_probs=136.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..-.+||+++|..-||||||+-|++.++|....-.+..... ....+......+.||||+|+++|..+-+.|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 33468999999999999999999999998654222111111 3344555667799999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++++|+.+.. |..+++.. +..+.+++|+||+|+...+.+ + .+..+.++...|. .|+++||+++.||.
T Consensus 90 lLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V-t-~qeAe~YAesvGA--~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV-T-RQEAEAYAESVGA--LYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh-h-HHHHHHHHHhhch--hheecccccccCHH
Confidence 99999999999999996 99999875 456888999999999988887 3 3446778888885 59999999999999
Q ss_pred HHHHHHHHHHhCC
Q 006490 166 DVFYYAQKAVLHP 178 (643)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (643)
++|+.+...++..
T Consensus 165 elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 165 ELFESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877544
No 156
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=2e-23 Score=178.24 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=143.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
.-.|||+++|..=||||||+-+++..+|....-.|....+..+.+.+.+.+..+.||||+|+++|..+ -+-+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL--GPIYYRgSnG 88 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL--GPIYYRGSNG 88 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc--CceEEeCCCc
Confidence 34699999999999999999999999998766667666677777777766778889999999999998 7789999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++|++||+.++.|..+++..... .+.+++|+||+||.+++++ .++++.+++..|.. ++++||+.+ ||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCHH
Confidence 99999999999999999999999876543 5789999999999987766 77889999999987 999999999 999
Q ss_pred HHHHHHHHHH
Q 006490 579 NVFSRIIWAA 588 (643)
Q Consensus 579 ~l~~~l~~~~ 588 (643)
++|+.|....
T Consensus 165 elFe~Lt~~M 174 (218)
T KOG0088|consen 165 ELFESLTAKM 174 (218)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 157
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=8.5e-23 Score=190.51 Aligned_cols=157 Identities=9% Similarity=0.064 Sum_probs=116.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+++|++|||||||+++|..+.+....|+ .+.... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t-~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCC-cccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4568999999999999999999998776543333 222221 2334678999999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHH--hhc-ccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFR-EIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.....|.+.+... ..++|++||+||+|+.... .. +.++.... ... ...+++++||++|.|++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~-~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CH-HHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999998876444454432 3579999999999986431 11 22222211 111 11257999999999999
Q ss_pred HHHHHHHH
Q 006490 166 DVFYYAQK 173 (643)
Q Consensus 166 ~l~~~i~~ 173 (643)
++|+++.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99998864
No 158
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.89 E-value=9.3e-23 Score=194.45 Aligned_cols=154 Identities=16% Similarity=0.260 Sum_probs=125.1
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCc
Q 006490 18 VGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ 95 (643)
Q Consensus 18 vG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~ 95 (643)
+|++|||||||+++++.+.+...+.++.+... ....++...+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888766555443322 3334456678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 96 ~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
.+++.+. .|.+.+++.++++|++||+||+|+... .+ .. +. ..+++..+ ..+++|||++|.||.++|+++++.+
T Consensus 81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~~-~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-KV-KA-KS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-cC-CH-HH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999998 599999887779999999999998642 22 22 22 24444443 3699999999999999999999987
Q ss_pred hCC
Q 006490 176 LHP 178 (643)
Q Consensus 176 ~~~ 178 (643)
...
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 543
No 159
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=1.6e-22 Score=199.36 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=126.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+++|+++.|...+.++.+.. .....+.+..+.+.||||+|.+.+..+...++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999998876655544432 2333455556889999999998888888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc----------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++++.+++.+. .|...+... ..++|+|+|+||+|+...+.+ ..++ +..+..... ...++++||++|
T Consensus 81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~e-i~~~~~~~~-~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRDE-VEQLVGGDE-NCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHHH-HHHHHHhcC-CCEEEEEeCCCC
Confidence 99999999987 487777532 247999999999999764443 3333 333333221 136999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006490 162 IQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (643)
.||+++|+++......+.
T Consensus 157 ~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 157 SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999998765443
No 160
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.6e-22 Score=192.71 Aligned_cols=160 Identities=21% Similarity=0.296 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|++..+...+.++.+... ....++...+.+.+|||+|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999988664444333322 23344455688999999999988888999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+.. |++.+.... .+.|+++|+||+|+.....+ ..+....+....+ .+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLN--IPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999985 999887653 46899999999998765443 2233445555554 2699999999999999999
Q ss_pred HHHHHHhC
Q 006490 170 YAQKAVLH 177 (643)
Q Consensus 170 ~i~~~~~~ 177 (643)
++.+.+..
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99988753
No 161
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=1.6e-22 Score=188.27 Aligned_cols=158 Identities=16% Similarity=0.253 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
+||+++|++|||||||+++|... .+..++.++.+... ....+ ....+.+.+|||||++.+..+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 46556554443222 11222 345688999999999888888899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
+|||++++.+++.+. .|+..+.....++|+++|+||+|+...... . ....+.+...++ .++++|||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKAEV-T-DAQAQAFAQANQ--LKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccCC-C-HHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence 999999999999887 599988776667999999999999765443 2 222344445544 36899999999999999
Q ss_pred HHHHHHHH
Q 006490 168 FYYAQKAV 175 (643)
Q Consensus 168 ~~~i~~~~ 175 (643)
|+.+.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 162
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.89 E-value=1.6e-22 Score=190.31 Aligned_cols=162 Identities=24% Similarity=0.378 Sum_probs=127.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
.||+|+|++|||||||+++|.++.+...+.++.... .....+....+.+.+|||+|++.+......++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999998876654433332 2333445566789999999999888877788999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++++.+++.+...|...++...+++|+++|+||+|+...... .......+.+...++. .++++|||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~ 160 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA-FGYMECSAKTK 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC-cEEEEeccccC
Confidence 999999999877799988876678999999999998643210 0112334555555543 36999999999
Q ss_pred CChhHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAV 175 (643)
Q Consensus 162 ~gi~~l~~~i~~~~ 175 (643)
.|++++|+++.+.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 163
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=2.7e-22 Score=184.82 Aligned_cols=153 Identities=18% Similarity=0.270 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++++.+.+...+.|+ ...+ ...+.+.|....+.+||++|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence 48999999999999999999998887766444 3334 35567776666788999999864 235678999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--cc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|||++++.||+.+..|+..+....... +.|+++|+||.|+.. .+ ...++.+++++..+..++++|||++| ||++
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 999999999999999999988765322 789999999999853 22 22566778888775334999999999 9999
Q ss_pred HHHHHHHH
Q 006490 580 VFSRIIWA 587 (643)
Q Consensus 580 l~~~l~~~ 587 (643)
+|+.+++.
T Consensus 150 ~f~~~~~~ 157 (158)
T cd04103 150 VFQEAAQK 157 (158)
T ss_pred HHHHHHhh
Confidence 99998764
No 164
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=4.4e-22 Score=193.11 Aligned_cols=170 Identities=20% Similarity=0.295 Sum_probs=135.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+++|++..+. .+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL--TSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence 4689999999999999999999998764 34567776676666767756677889999999988877 77889999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 502 IFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
++|||++++.+|+.+.. |...+....... +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v~ 166 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQ--DCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENVE 166 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999876 555554433322 6899999999999764433 45666777888876 999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCCC
Q 006490 579 NVFSRIIWAAEHPHLNIPE 597 (643)
Q Consensus 579 ~l~~~l~~~~~~~~~~~~~ 597 (643)
++|++|.+.+.......++
T Consensus 167 ~l~~~l~~~~~~~~~~~~~ 185 (211)
T PLN03118 167 QCFEELALKIMEVPSLLEE 185 (211)
T ss_pred HHHHHHHHHHHhhhhhhhc
Confidence 9999999987644333333
No 165
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=2.4e-22 Score=187.79 Aligned_cols=161 Identities=23% Similarity=0.334 Sum_probs=128.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
++||+++|++|||||||+++|.++.+...+.++.+.. .....+....+.+.+|||||++.+..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999999988866654443322 233345556688999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+...+.. . .+....+.+.++. .+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV-S-REDGVSLSQQWGN-VPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc-C-HHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence 9999999999874 88777542 357999999999999765443 2 2334455566553 369999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
+++.+.+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99988654
No 166
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=5.7e-22 Score=183.89 Aligned_cols=159 Identities=19% Similarity=0.352 Sum_probs=133.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|+|++..+...+.++++..+....+...+....+.+||++|++.+..+ +...++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL--GPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--hHHHhccCCEEEE
Confidence 48999999999999999999999887766677766666666666655567889999999888776 6778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|+|++++.+++....|+..+...... ++|+++|+||+|+...... .+...++.+..+.. ++++||++| |+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELF 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 99999999999999999888776543 6899999999999854433 55667778888876 899999999 999999
Q ss_pred HHHHHHH
Q 006490 582 SRIIWAA 588 (643)
Q Consensus 582 ~~l~~~~ 588 (643)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998754
No 167
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=1.7e-22 Score=189.29 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=126.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+++|++|||||||+++++++.+.....++.+... ....+....+.+.||||||++.+...+..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 458999999999999999999999887665433333221 233455667889999999999988899999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
|||++++.+++.+. .|...+.... .+.|+++|+||+|+.. ... ..+....++.+++. .+++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 158 (170)
T cd04116 84 TFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQV--STEEAQAWCRENGD-YPYFETSAKDATN 158 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-ccc--CHHHHHHHHHHCCC-CeEEEEECCCCCC
Confidence 99999999999987 4887765432 4689999999999863 222 23445667776652 3689999999999
Q ss_pred hhHHHHHHHHH
Q 006490 164 VPDVFYYAQKA 174 (643)
Q Consensus 164 i~~l~~~i~~~ 174 (643)
+.++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 168
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.7e-22 Score=188.68 Aligned_cols=158 Identities=25% Similarity=0.431 Sum_probs=129.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||++++.++.+...+.||....+.. .+..++....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCccccccc--ccccCCCCCEEEE
Confidence 589999999999999999999999887777776654433 4556655556779999999888776 6677899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.. ...+++..+++.+++.++++
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAP----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999886 57777765422 79999999999986532 12456778888899867999
Q ss_pred eeeccC-CHHHHHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~~ 588 (643)
|||++| |++++|+.+++.+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 999999 9999999998865
No 169
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=173.90 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=134.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--Ccc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
-.++++++|++-||||||+..++.+++.+-..++.+..... ..+ .+..+++.+|||+|++++.+.+..+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 35799999999999999999999999877755555544311 122 245788999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEE-EEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPII-VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvi-lv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|||++++.+|+.+.. |+.+...+ +|+++|. |||+|+|+...+.+ ..++.+.+++.+| ..++++||++|.||
T Consensus 87 lvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hg--M~FVETSak~g~NV 161 (213)
T KOG0091|consen 87 LVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHG--MAFVETSAKNGCNV 161 (213)
T ss_pred EEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcC--ceEEEecccCCCcH
Confidence 9999999999999985 99888654 3666664 69999999988877 4556788999988 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
++.|+.+.+.+.
T Consensus 162 eEAF~mlaqeIf 173 (213)
T KOG0091|consen 162 EEAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 170
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=2.8e-22 Score=188.30 Aligned_cols=156 Identities=19% Similarity=0.383 Sum_probs=128.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||++++.++.+...+.||..+.+. ..+...+....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKL--RPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhccc--cccccCCCcEEEE
Confidence 58999999999999999999999888878777755443 34566655677889999999888777 5668899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.... ...+++..+++..+..++++
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNP----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 99999999999885 58877775432 78999999999986421 22567788899999866999
Q ss_pred eeeccC-CHHHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~ 586 (643)
|||++| |++++|+.++-
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999 99999998764
No 171
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=2.6e-22 Score=194.10 Aligned_cols=160 Identities=20% Similarity=0.277 Sum_probs=127.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+||+|+|++|||||||+++|++..+.....++.+... ....+ ....+.+.+|||+|++.+......+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999888666444333222 11222 2346789999999999988888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++++.. |...+.... ...|+++|+||+|+.....+ ..+....+++.++ .+++++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence 999999999999984 888886542 35778999999999765444 3344567777776 4799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 157 ~f~~l~~~~~ 166 (211)
T cd04111 157 AFELLTQEIY 166 (211)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 172
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=1.8e-22 Score=188.08 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCCEEEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~il~v~d 91 (643)
||+++|++|||||||+++++.+.+...++++.. .......++...+.+.+|||||... +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 699999999999999999999888666555432 2223344555667899999999885 34556788999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC-CChhHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM-IQVPDV 167 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l 167 (643)
++++.+++.+. .|...+... ..++|+++|+||+|+.....+ . .+....+++.++ .+++++||++| .||+++
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYRQV-S-TEEGEKLASELG--CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc-C-HHHHHHHHHHcC--CEEEEeCCCCCchhHHHH
Confidence 99999999987 488888764 348999999999998665444 2 334456666666 37999999999 599999
Q ss_pred HHHHHHHH
Q 006490 168 FYYAQKAV 175 (643)
Q Consensus 168 ~~~i~~~~ 175 (643)
|+.+.+.+
T Consensus 156 f~~l~~~~ 163 (165)
T cd04146 156 FHELCREV 163 (165)
T ss_pred HHHHHHHH
Confidence 99998764
No 173
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=5.3e-22 Score=193.31 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC--CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc-cCCEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL 88 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~il~ 88 (643)
+||+++|++|||||||+++|+.+.+. ..++++.+ .......++.....+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988875 44444332 222334555677889999999987 233445667 9999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+. .|+..+.... .++|+|+|+||+|+.....+ .. +....++..++ .+++++||++|.||++
T Consensus 79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~~-~~~~~~a~~~~--~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSREV-SV-QEGRACAVVFD--CKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhcccccee-cH-HHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence 99999999999887 4888886643 57999999999999765544 32 33355666655 3689999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 174
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=4.4e-22 Score=193.12 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=130.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
+.....+||+|+|++|||||||+++|++..+....+ +.+... ....++...+.+.||||||++.+...+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAP-TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCC-CceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 345567899999999999999999999987643333 333222 22334455678999999999999888999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
++|+|||++++.+++.+...|...+.... .+.|+++|+||+|+...... . .+....+....+ ..++++||++|.
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~-~~~~~~~~~~~~--~~~~e~SAk~~~ 163 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-S-REEGMALAKEHG--CLFLECSAKTRE 163 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-C-HHHHHHHHHHcC--CEEEEEeCCCCC
Confidence 99999999999999999877887776542 36799999999999765443 2 233445555554 368999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006490 163 QVPDVFYYAQKAVLH 177 (643)
Q Consensus 163 gi~~l~~~i~~~~~~ 177 (643)
|++++|+++.+.+..
T Consensus 164 ~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 164 NVEQCFEELALKIME 178 (211)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 175
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.89 E-value=3.3e-22 Score=191.37 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=126.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+||+|+|++|||||||+++|+++.+.. .+.++.+... ....+....+.+.+|||+|.+++......+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998764 3444333322 2334455567788999999998888888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc--cchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
||++++.+++.+. .|++.++...++.|+++|+||+|+..... .....+....+...++ .+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--AQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHH
Confidence 9999999999987 59999887766899999999999864321 1011233445555554 36899999999999999
Q ss_pred HHHHHHHHhC
Q 006490 168 FYYAQKAVLH 177 (643)
Q Consensus 168 ~~~i~~~~~~ 177 (643)
|+++.+.+..
T Consensus 158 ~~~i~~~~~~ 167 (193)
T cd04118 158 FQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 176
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.89 E-value=3.8e-22 Score=185.48 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=127.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++||+++|++|||||||+|+|++..+.....++.+.. .....++...+.+.+|||||.+++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999866433333321 23345566678899999999988888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
+|++++.+++... .|+..+.... ++.|+++|+||+|+...... ..+....+....+ ..++++||++|.|+.+++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 9999999999988 5888886654 67899999999998754433 2234455666665 369999999999999999
Q ss_pred HHHHHHH
Q 006490 169 YYAQKAV 175 (643)
Q Consensus 169 ~~i~~~~ 175 (643)
+++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998764
No 177
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=4.2e-22 Score=186.49 Aligned_cols=159 Identities=20% Similarity=0.305 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcch-hhhHHhhccCCEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL 88 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~ 88 (643)
.+||+++|++|||||||+++++...+.....++.+... ....+....+.+.+|||+|++++. ...+.+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 47999999999999999999999887655443332221 223445556889999999998775 467788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc---CCC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ 163 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~g 163 (643)
|||++++.+++.+. .|...+.... .++|+++|+||+|+.....+ ..+....+++... .+++++||++ +.|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence 99999999999998 4998887643 57999999999998765544 2334455665554 4699999999 999
Q ss_pred hhHHHHHHHHHH
Q 006490 164 VPDVFYYAQKAV 175 (643)
Q Consensus 164 i~~l~~~i~~~~ 175 (643)
++++|..+.+.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 178
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=6.4e-22 Score=183.49 Aligned_cols=157 Identities=17% Similarity=0.253 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||...+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999987665444333322 22333444578999999999998888899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+. .|+..+... ..+.|+++|+||+|+...... ..+....+.+..+ ..++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence 999999999987 588877543 336999999999999644333 2233445555554 4699999999999999999
Q ss_pred HHHHH
Q 006490 170 YAQKA 174 (643)
Q Consensus 170 ~i~~~ 174 (643)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 98764
No 179
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=6.1e-22 Score=184.19 Aligned_cols=159 Identities=23% Similarity=0.335 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||...+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999887554333322221 22334444578999999999888888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+.. |+..+.... +++|+++|+||+|+...... ..+....+...++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999884 988887654 68999999999998764433 2334555666665 3699999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
.+.+.+.
T Consensus 156 ~i~~~~~ 162 (164)
T smart00175 156 ELAREIL 162 (164)
T ss_pred HHHHHHh
Confidence 9988754
No 180
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=6.3e-22 Score=184.41 Aligned_cols=159 Identities=23% Similarity=0.389 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccCCEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF 503 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad~ill 503 (643)
||+++|++|||||||++++++..+...+.+|+...+. ..+...+....+.+||++|++.. ... ...+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQ--LERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccch--HHHHHHhCCEEEE
Confidence 5899999999999999999998887777777655443 34455655667889999998742 222 5678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--CHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--DLNN 579 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--~i~~ 579 (643)
|||++++.||+.+..|+..+..... .. ++|+++|+||+|+...+.. .+....+++..+.. ++++||++| |+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDR--EIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHS 154 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHH
Confidence 9999999999999999888876543 22 7999999999998654333 55677888888865 999999997 6999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 181
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5e-22 Score=166.31 Aligned_cols=162 Identities=19% Similarity=0.360 Sum_probs=146.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+|..|+|+-|||||.|+..+...+|....+.|++..+-.+++.+.|...++.+|||+|++++..+ +..++++|.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav--trsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence 45689999999999999999999999999888789999999999999988899999999999999999 8999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
.++|||++.+.++..+..|+.+.+....+ +..+++++||.||...+.+ .++.++++++.|+. ++++|||+| |++
T Consensus 87 almvyditrrstynhlsswl~dar~ltnp---nt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve 162 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE 162 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCC---ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence 99999999999999999999988766543 6789999999999886655 78899999999998 999999999 999
Q ss_pred HHHHHHHHHH
Q 006490 579 NVFSRIIWAA 588 (643)
Q Consensus 579 ~l~~~l~~~~ 588 (643)
+.|-...+.+
T Consensus 163 dafle~akki 172 (215)
T KOG0097|consen 163 DAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHH
Confidence 9887777654
No 182
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=8.6e-22 Score=187.28 Aligned_cols=164 Identities=26% Similarity=0.361 Sum_probs=127.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
.||+|+|++|||||||++++..+.+...+.++.... .....+....+.+.+|||+|++.+....+..++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999877765533322222 2223344456778999999998877777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC---------ccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
+++..+++.+...|.+.++...++.|+++|+||+|+.... .. ...+....+++.++. .++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGA-KKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCC-cEEEEccCCCCC
Confidence 9999999999877999998777789999999999985421 11 112334566676653 369999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 006490 163 QVPDVFYYAQKAVLHP 178 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~ 178 (643)
||+++|+.+.+.++..
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877543
No 183
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=9.7e-22 Score=185.50 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
...+||+++|++|||||||++++..+.+....|+ .+.... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt-~g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCC-cceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4568999999999999999999998777543333 332222 3445678999999999998888999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc------cceEEEeCcccCC
Q 006490 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI 162 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~ 162 (643)
||++++.+++.....+...+.. ..+++|++||+||+|+..... . ..+...++- ...+++|||++|+
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---A----AEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---H----HHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999998887544444332 235799999999999875422 1 222222221 0135689999999
Q ss_pred ChhHHHHHHHHHHh
Q 006490 163 QVPDVFYYAQKAVL 176 (643)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (643)
||.++|+++.+.+.
T Consensus 165 gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 GLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 184
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=2.6e-21 Score=179.89 Aligned_cols=160 Identities=24% Similarity=0.427 Sum_probs=132.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||++++++..+...+.+++.+.+. .....++....+.+||++|++.+..+ +...++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAI--RDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHH--HHHHhhcCCEEEE
Confidence 48999999999999999999999888777777766543 34455556677889999999888877 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|+|++++.+|.....|...+....... ++|+++|+||+|+.... ........+++.++++ ++++||++| |++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDD--NVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHH
Confidence 999999999999999988887764333 79999999999997632 3355666777888875 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
+.+.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T cd04139 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHH
Confidence 99988764
No 185
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.88 E-value=6.6e-22 Score=185.35 Aligned_cols=160 Identities=28% Similarity=0.427 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+++|++..+... .++...............+.+.+|||||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 5899999999999999999999987444 333222222333445667889999999999887778888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc---------hhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
++++.++.....+|...+.....++|+++|+||+|+....... ...+....+...++. .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA-IGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC-eEEEEeecCCCC
Confidence 9999999998888999888776689999999999987654220 123344556666653 279999999999
Q ss_pred ChhHHHHHHHH
Q 006490 163 QVPDVFYYAQK 173 (643)
Q Consensus 163 gi~~l~~~i~~ 173 (643)
|+.++++.+++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 186
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=1.6e-21 Score=183.57 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=128.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
.||+|+|++|||||||+++|.++.+...+.||....+.. .+...+....+.+||++|++.+..+ ....+.++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhc--cccccCCCCEEEE
Confidence 489999999999999999999999888787887765543 4456655667889999999888776 5567899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCCcEE
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPIP 569 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~ 569 (643)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+..... .....+++++.++..++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~ 154 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence 99999999998885 47777766433 789999999999864321 1356677777777766999
Q ss_pred eeeccC-CHHHHHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~~ 588 (643)
|||++| |++++|++|.+.+
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 155 CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred eccccCcCHHHHHHHHHHHh
Confidence 999999 9999999998765
No 187
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=1.1e-21 Score=184.14 Aligned_cols=161 Identities=21% Similarity=0.268 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+|++++..+.....++.+... ....+....+.+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887555433333221 22334455677899999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|++++.+++.+. .|.+.+.... .++|+++|+||+|+...... ..+....+....+. .+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence 999999998886 4877664433 27999999999999753332 23445566666653 479999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++++++.+.+..
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 188
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=9e-22 Score=184.97 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=115.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+..+||+++|++|||||||++++..+.+....|+ .+.... .+....+.+.+|||||+..+...+..+++++|++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPT-IGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCc-cccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4569999999999999999999987776433333 222111 2334578899999999999988899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc------ccceEEEeCcccCC
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATTMI 162 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~ 162 (643)
||++++.+++.....|...++.. ..++|++||+||+|+.+.... . ++...++ ....++++||++|.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---A----EITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---H----HHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999998886444444332 357899999999998653211 1 1111111 11136789999999
Q ss_pred ChhHHHHHHHHHH
Q 006490 163 QVPDVFYYAQKAV 175 (643)
Q Consensus 163 gi~~l~~~i~~~~ 175 (643)
||+++|+++.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987654
No 189
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=7.4e-22 Score=182.52 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+||+++|.+|||||||++++..+.+....|+ .+.... .+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt-~g~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 5899999999999999999988777643333 222211 2334578899999999998888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHH-hhc-ccceEEEeCcccCCChhHHHH
Q 006490 93 NQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QFR-EIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
+++.+++.....|...+.. ...+.|++||+||+|+.+... ..+....+.. .+. ....++++||++|.||+++|+
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 9999999988644444433 224689999999999864311 1122222211 111 111467999999999999999
Q ss_pred HHHH
Q 006490 170 YAQK 173 (643)
Q Consensus 170 ~i~~ 173 (643)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 8753
No 190
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=1.5e-21 Score=181.51 Aligned_cols=159 Identities=22% Similarity=0.337 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
+||+++|++|||||||+++++...+...+.++... ......++...+.+.+|||||+..+......+++.+|++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998887665443332 22334455567889999999999998899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
++++.+++.+.. |...+... ..++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWG--VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHHH
Confidence 999999999886 55555443 348999999999998763222 2233445556555 3799999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
.+.+.+.
T Consensus 156 ~l~~~~~ 162 (164)
T cd04139 156 DLVREIR 162 (164)
T ss_pred HHHHHHH
Confidence 9887653
No 191
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=1.8e-21 Score=188.33 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=129.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||+|.+.+...+..+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999887665444333322 223444556789999999999888888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|||++++.+++.+.. |...+... .++.|+++|+||+|+...+.. . .+..+.+++.++ .+++++||+++.||+++
T Consensus 85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV-S-TEEGEQFAKEHG--LIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 999999999999874 88777554 357999999999999765544 2 344566666665 36999999999999999
Q ss_pred HHHHHHHHhC
Q 006490 168 FYYAQKAVLH 177 (643)
Q Consensus 168 ~~~i~~~~~~ 177 (643)
|+++.+.+..
T Consensus 160 f~~l~~~~~~ 169 (210)
T PLN03108 160 FIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 192
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.88 E-value=1.7e-21 Score=180.68 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+|+|++..+.....++..... ....+....+.+.+|||||++.+...++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887655433332222 22333345678999999999888888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+. .|.+.++... .++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--AKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 999999999887 4888886653 37899999999998754433 2333445555554 3689999999999999999
Q ss_pred HHHHHH
Q 006490 170 YAQKAV 175 (643)
Q Consensus 170 ~i~~~~ 175 (643)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 988764
No 193
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=1.5e-21 Score=182.42 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
||+++|++|||||||+++|.+..+....|+ .+... ..+...++.+.+|||||+..+...+..+++.+|++++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T-~~~~~--~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPT-IGFNV--ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CceeE--EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 689999999999999999999876542332 22111 134456789999999999988888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHh-c-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----cccceEEEeCcccCCChhHH
Q 006490 94 QQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----REIETCVECSATTMIQVPDV 167 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~-~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 167 (643)
++.+++++.. |+..+.+ . ..+.|++||+||+|+... . .. +.+..+.... +....+++|||++|.||+++
T Consensus 78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--L-SV-EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--C-CH-HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 9999999875 5555532 2 246899999999998643 1 22 2233332211 11125789999999999999
Q ss_pred HHHHHHHHhC
Q 006490 168 FYYAQKAVLH 177 (643)
Q Consensus 168 ~~~i~~~~~~ 177 (643)
|+++.+.+..
T Consensus 153 f~~l~~~~~~ 162 (169)
T cd04158 153 LDWLSRQLVA 162 (169)
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 194
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=5.1e-21 Score=179.01 Aligned_cols=161 Identities=21% Similarity=0.329 Sum_probs=130.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||++++.++.+...+.+|.+.++....+...|....+.+||++|++.+... +..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI--TQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence 3489999999999999999999988776666667666666666667655567789999999887776 67789999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. ....+.+.+..... ++++||++| |+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~ 159 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMY-YLETSAKESDNVEK 159 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEeeCCCCCCHHH
Confidence 9999999999999999998887665432 6899999999999764443 34456666666644 899999999 9999
Q ss_pred HHHHHHHHH
Q 006490 580 VFSRIIWAA 588 (643)
Q Consensus 580 l~~~l~~~~ 588 (643)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998753
No 195
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=2e-21 Score=181.30 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=116.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+++|..+.+.. +.||++.++. .+.. ....+.+||++|++.+..+ +..++++||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 35899999999999999999999877653 4467665443 2332 4567889999999988777 67889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-----hCCCCcEEeeeccC-
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKSK- 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~g- 575 (643)
++|||++++.+|+....|+..+....... ++|+++|+||+|+... ...+++++..+. .++ +++++||++|
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~-~~~~~SAk~g~ 156 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLPDA-MKPHEIQEKLGLTRIRDRNW-YVQPSCATSGD 156 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCccC-CCHHHHHHHcCCCccCCCcE-EEEEeeCCCCC
Confidence 99999999999998888877765432112 6899999999998652 223334333321 112 3789999999
Q ss_pred CHHHHHHHHHH
Q 006490 576 DLNNVFSRIIW 586 (643)
Q Consensus 576 ~i~~l~~~l~~ 586 (643)
|++++|++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 196
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.87 E-value=1.7e-21 Score=180.15 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||++++..+.+. .+.||++.+.. .+.. ....+.+||++|++.+..+ +..++++||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEEEE
Confidence 48999999999999999999887776 35577665442 2332 4567889999999888777 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH----HhCCCCcEEeeeccC-CHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSa~~g-~i~ 578 (643)
|||++++.+|+....++..+....... +.|+++|+||+|+.+.....+..+.+.. ..++ .++++||++| |++
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~ 150 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLY 150 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHH
Confidence 999999999999888877765432222 6899999999999653221122222210 0111 2578999999 999
Q ss_pred HHHHHHHH
Q 006490 579 NVFSRIIW 586 (643)
Q Consensus 579 ~l~~~l~~ 586 (643)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99999864
No 197
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=2.1e-21 Score=187.05 Aligned_cols=185 Identities=17% Similarity=0.231 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhhcc
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEALAS 497 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~~~ 497 (643)
--|+|+|+||||||||+|+++|.+.+++++...+++..+.-+-+. +...+.++||+|-..-.. + ..+...+.+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 469999999999999999999999999998433333445555555 466788899999432211 1 125678899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
+|+++||+|++++.. ......++.+... +.|+++++||+|...+.. .....+.+.....+..++++||++|
T Consensus 86 vDlilfvvd~~~~~~-~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 86 VDLILFVVDADEGWG-PGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred CcEEEEEEeccccCC-ccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 999999999998644 2334444455442 689999999999988665 3566667777778888999999999
Q ss_pred CHHHHHHHHHHHH-hCCCCCCCCcccccchh-hhhhhhchhhH
Q 006490 576 DLNNVFSRIIWAA-EHPHLNIPETETGRNRK-RYRHLVNSSLV 616 (643)
Q Consensus 576 ~i~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 616 (643)
|++.+.+.+.+.+ .++..++++..++.+.+ .+.+++++.+.
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~ 201 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLL 201 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHH
Confidence 9999999999976 57787888888887766 56666666553
No 198
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=183.22 Aligned_cols=166 Identities=23% Similarity=0.375 Sum_probs=144.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|.+|||||+|..++++..|...|+||+.+.+ .+.+.++|+...+.|+||+|++.+..+ ...+++.+|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~--~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAM--RDLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHH--HHHhhccCcEEE
Confidence 47999999999999999999999999999999999644 455556667788889999998888887 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+||+++++.||+.+..+...|.+..... ..|+++|+||+|+...+++ .++.+.++..++++ ++++||+.+ +++++
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDEV 156 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHHH
Confidence 9999999999999999999995544433 6899999999999885555 77889999999998 999999999 99999
Q ss_pred HHHHHHHHhCCCCC
Q 006490 581 FSRIIWAAEHPHLN 594 (643)
Q Consensus 581 ~~~l~~~~~~~~~~ 594 (643)
|..|.+.+..+...
T Consensus 157 F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 157 FYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999988754433
No 199
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=4.2e-21 Score=177.06 Aligned_cols=156 Identities=23% Similarity=0.440 Sum_probs=133.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|++.+..+...+.+|.+.++....+..++....+.+||++|++.+... ....++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--TPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--HHHHhcCCCEEEE
Confidence 48999999999999999999999988887778777777777777755677889999999887776 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|+|++++.+++.+..|+..+...... +.|+++|+||+|+. ......+....+....+.. ++++||+++ |+++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPE---NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELF 154 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHH
Confidence 99999999999999999988876532 69999999999997 3333467777888887776 999999999 999999
Q ss_pred HHHH
Q 006490 582 SRII 585 (643)
Q Consensus 582 ~~l~ 585 (643)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 200
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=1.7e-21 Score=184.14 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=117.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+++|++|||||||++++..+.+....|+ .+.... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T-~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCc-cccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4568999999999999999999988777543333 222221 2345678999999999998888899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hcc-cceEEEeCcccCCChhH
Q 006490 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FRE-IETCVECSATTMIQVPD 166 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~ 166 (643)
||++++.+++.....+.+.+.. ...++|++||+||+|+..... ..+....+... +.. ...++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS---TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC---HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999887645544443 224789999999999865321 11111111110 111 01356899999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 169 ~~~~l~~~i~ 178 (182)
T PTZ00133 169 GLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 201
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=2.7e-21 Score=179.38 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999887665444443322 22334455688999999999988888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|++++.+++.+.. |.+.+.... .+.|+++|+||+|+..... ..+....+....+ .+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENREV---TREEGLKFARKHN--MLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccccc---CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence 9999999999885 988887653 5799999999999973322 2233455555554 369999999999999999
Q ss_pred HHHHHH
Q 006490 169 YYAQKA 174 (643)
Q Consensus 169 ~~i~~~ 174 (643)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 988764
No 202
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=3.9e-21 Score=180.67 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=118.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||++++..+.+. .+.||++.++. .+.. ....+.+||++|++.+..+ +..++++||++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~--~~~~~~~ad~i 84 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPL--WRHYYTNTQGL 84 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHH--HHHHhCCCCEE
Confidence 3589999999999999999999877764 35577665443 2332 3567889999999888877 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~ 574 (643)
|+|+|++++.+++....|+..+....... +.|+++|+||+|+.+... ..++.+..+.. .++++||++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPDAMK----AAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCcccCCC----HHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 99999999999999888887775432112 689999999999875321 22333333322 256899999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++|++|.+.+.
T Consensus 159 g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 159 GDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9 99999999987653
No 203
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=4.3e-21 Score=184.20 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|.+|||||||+++|++..+...+.+|+.. .....+...|....+.+||++|+..+..+ ...++..||++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAM--RKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHH--HHHHhhcCCEEEEE
Confidence 6899999999999999999999888777677654 34445666655567889999999888776 56788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHH-HhCCCCcEEeeeccC-CHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMA-VQDSARVTQ-ELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-~~~-~~~~~~~~~-~~~~~~~~~vSa~~g-~i~~l 580 (643)
||++++.+++.+..|+..+....... ++|+++|+||+|+... ... .+...+... ..+. +++++||++| |++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDK--FVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVLEV 154 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence 99999999999999988887765433 7999999999998653 222 222222322 2333 4899999999 99999
Q ss_pred HHHHHHHHhCCC
Q 006490 581 FSRIIWAAEHPH 592 (643)
Q Consensus 581 ~~~l~~~~~~~~ 592 (643)
|+++++.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (198)
T cd04147 155 FKELLRQANLPY 166 (198)
T ss_pred HHHHHHHhhccc
Confidence 999999876333
No 204
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=3.7e-21 Score=181.50 Aligned_cols=155 Identities=20% Similarity=0.221 Sum_probs=120.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||++++..+++. .+.||++.+. ..++. ....+.+||++|++.+..+ +..++++||++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~a~~i 88 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGL 88 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 3589999999999999999999987775 3456766443 23433 4567889999999988877 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~ 574 (643)
|+|||++++.+++....++..+....... +.|++||+||+|+.... ..+++.+.+++. .++++||++
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~--~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhC--CCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 99999999999988887776664322112 78999999999987632 234555566554 245799999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++|++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9 99999999998765
No 205
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=5.9e-21 Score=177.97 Aligned_cols=159 Identities=23% Similarity=0.311 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|||||||+++|.++.+...++++ ...+. ......+....+.+||++|.+.+... +..++..+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEIT-IPADVTPERVPTTIVDTSSRPQDRAN--LAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceE-eeeeecCCeEEEEEEeCCCchhhhHH--HhhhcccCCEEEE
Confidence 38999999999999999999999887654333 33332 22334446678889999998776554 5667899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC-CCCcEEeeeccC-CH
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG-IEPPIPVSMKSK-DL 577 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~vSa~~g-~i 577 (643)
|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.... .+....++..++ ..+++++||++| |+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 99999999999875 57777766543 7899999999999765432 233444444443 336999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 006490 578 NNVFSRIIWAAEH 590 (643)
Q Consensus 578 ~~l~~~l~~~~~~ 590 (643)
+++|+.+.+.+.+
T Consensus 153 ~~lf~~~~~~~~~ 165 (166)
T cd01893 153 SEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988753
No 206
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=1.4e-21 Score=181.57 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=117.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~ 94 (643)
|+++|++|||||||+++|++..+...+.++.+... ..+...++.+.+|||||+..+...+..+++++|++|+|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 89999999999999999999887665444433322 2345667899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh--hhhhhHHHHhhcccceEEEeCccc------CCChhH
Q 006490 95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD 166 (643)
Q Consensus 95 ~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~ 166 (643)
+.++..... |+..+....+++|+++|+||+|+......... ...+..+.++.+ ..++++||++ ++||.+
T Consensus 80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR--WILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc--eEEEEeeecCCCChhHHHHHHH
Confidence 999888874 66666544468999999999998765433010 112344444333 2577777777 999999
Q ss_pred HHHHHH
Q 006490 167 VFYYAQ 172 (643)
Q Consensus 167 l~~~i~ 172 (643)
+|+.++
T Consensus 157 ~~~~~~ 162 (164)
T cd04162 157 LLSQLI 162 (164)
T ss_pred HHHHHh
Confidence 999775
No 207
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=1e-20 Score=178.96 Aligned_cols=163 Identities=18% Similarity=0.323 Sum_probs=132.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
.||+|+|.+|||||||++++++..+...+.||+...+ ...+..++....+.+||++|++.+..+ ...++..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL--PQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH--HHHHHhhCCEEEE
Confidence 5899999999999999999999988777777776544 344555545556789999999887766 6678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
|||+++..+++.+..|+..+.+..... +.|+++|+||+|+...+.. .+....+++.++.. ++++||++| |+.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAF 155 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 999999999999999888887654333 7899999999998754333 44566777777765 899999999 999999
Q ss_pred HHHHHHHhCCC
Q 006490 582 SRIIWAAEHPH 592 (643)
Q Consensus 582 ~~l~~~~~~~~ 592 (643)
+++.+.+....
T Consensus 156 ~~l~~~~~~~~ 166 (180)
T cd04137 156 ELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHhc
Confidence 99999876444
No 208
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=9.3e-21 Score=180.19 Aligned_cols=164 Identities=22% Similarity=0.341 Sum_probs=130.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
.||+|+|++|||||||++++..+.+...+.+|....+. ..+...+....+.+||++|++.+... ....+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERL--RPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhcccc--chhhcCCCCEEEE
Confidence 48999999999999999999988877666666665443 34455555566789999998877655 4557789999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-----------ccHHHHHHHHHHhCCCCcEEee
Q 006490 504 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 504 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS 571 (643)
|||+++..+|+.+. .|+..+....+ +.|+++|+||+|+.... ...+....+++.++..++++||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 154 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCP----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS 154 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence 99999999999986 58888876544 79999999999985421 1145677888889876699999
Q ss_pred eccC-CHHHHHHHHHHHHhCCCCC
Q 006490 572 MKSK-DLNNVFSRIIWAAEHPHLN 594 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~~~~~~ 594 (643)
|++| |++++|+.+.+.+..-...
T Consensus 155 a~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 155 ALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCc
Confidence 9999 9999999999887644433
No 209
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=6.5e-21 Score=178.27 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=123.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+++|++|||||||++++++..+.....++.+... ....+.+..+.+.+|||||+..+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4458999999999999999999998776544333222211 22334455577999999999888888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|.+.++... .+.|+++|+||+|+...... ..+..+.+..... ..+++|||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence 999999999998887 5888886644 36899999999998765443 2233344444333 4689999999999999
Q ss_pred HHHHHHHHH
Q 006490 167 VFYYAQKAV 175 (643)
Q Consensus 167 l~~~i~~~~ 175 (643)
+|+++.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999988754
No 210
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=9.2e-21 Score=179.10 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=118.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||++++..+.+.. +.||++..+. .++. ....+.+||++|++.+..+ +..+++++|++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i 88 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPL--WRHYYQNTNGL 88 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEE
Confidence 45899999999999999999998877754 4567665443 3443 4567889999999888877 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~ 574 (643)
|+|+|++++.++.....++..+....... +.|+++|+||.|+..... ..++...++.. .++++||++
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDELR--DAVLLVFANKQDLPNAMS----TTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhhc--CCCEEEEEeCCCCCCCCC----HHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 99999999999998887777664432112 689999999999865321 12333444432 256899999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++|++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9 99999999998664
No 211
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=1.3e-20 Score=174.42 Aligned_cols=157 Identities=23% Similarity=0.378 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+|+|++|||||||++++++..+...+.+++.. .........+....+.+||++|++.+..+ ....++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAM--RDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHHhcCCEEEEE
Confidence 6899999999999999999998877777777764 44455555544567789999999887776 67788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
||++++.++.....|...+....... +.|+++|+||+|+.... ...+.+..+...++.+ ++++||+++ |++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDE--DIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEVFK 154 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHH
Confidence 99999999999999988887765433 79999999999998733 3356777888888865 999999999 9999999
Q ss_pred HHHHH
Q 006490 583 RIIWA 587 (643)
Q Consensus 583 ~l~~~ 587 (643)
+|.+.
T Consensus 155 ~l~~~ 159 (160)
T cd00876 155 LLVRE 159 (160)
T ss_pred HHHhh
Confidence 99864
No 212
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=6.8e-21 Score=178.47 Aligned_cols=156 Identities=20% Similarity=0.355 Sum_probs=126.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++|++..+...+.++....+. .....++....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRL--RPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--chhhcCCCCEEEE
Confidence 58999999999999999999999986666666655443 33455666778889999999877665 5667789999999
Q ss_pred EEeCCChhhHHHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc------------HHHHHHHHHHhCCCCcEEe
Q 006490 504 VYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA------------VQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 504 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~~~~v 570 (643)
|||++++.+|..... |+..+..... +.|+++|+||+|+...... .+...+++..+++.+++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC 153 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence 999999999887654 6766665543 6999999999998764421 4567778888888569999
Q ss_pred eeccC-CHHHHHHHHHH
Q 006490 571 SMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~ 586 (643)
||++| |++++++.|++
T Consensus 154 Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 154 SALTQEGVKEVFEEAIR 170 (171)
T ss_pred ecCCCCCHHHHHHHHhh
Confidence 99999 99999999875
No 213
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=1.1e-20 Score=189.90 Aligned_cols=180 Identities=17% Similarity=0.189 Sum_probs=128.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hh-hccHHhhc
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KI-LSNKEALA 496 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~-~~~~~~~~ 496 (643)
+|+++|+||||||||+|+|++.+...+++ | ||+.. ...+... +..++.++||+|..... .+ ..+..++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~--i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR--ISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc--EEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999998877766 3 44442 3333334 23457889999964321 11 11456789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
.+|++++|+|++++.+.+ ..++..+... +.|+++|+||+|+............++...++.+++++||++|
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 999999999999876653 3344444433 7899999999999754444445556666666656999999999
Q ss_pred CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490 576 DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL 615 (643)
Q Consensus 576 ~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~ 615 (643)
|++++++.+.+.+. .+..++++..++.+.+ ...+.+++.+
T Consensus 151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~ 192 (270)
T TIGR00436 151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKI 192 (270)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence 99999999999875 4455666666665555 4455555554
No 214
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=2.8e-21 Score=179.57 Aligned_cols=151 Identities=22% Similarity=0.277 Sum_probs=119.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
+|+++|.+|||||||+++|.+..+...+.||.+... ..+ +++...+.+||++|++.+..+ +..++++||++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKY--WKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEE--eeCCeEEEEEECCCCcchhHH--HHHHHhhCCEEEEE
Confidence 489999999999999999999887776767776432 223 335677889999999888877 77899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHH-----HHHHHHHHhCCCCcEEeeecc-----
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-----DSARVTQELGIEPPIPVSMKS----- 574 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~vSa~~----- 574 (643)
||++++.++.....|+..+..... ++|+++|+||+|+.......+ ....++++.++. ++++||++
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~~----~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~ 149 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHPP----DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPS 149 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCCC----CCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChh
Confidence 999999999988888888765432 899999999999876443321 234455555655 78899888
Q ss_pred -C-CHHHHHHHHHH
Q 006490 575 -K-DLNNVFSRIIW 586 (643)
Q Consensus 575 -g-~i~~l~~~l~~ 586 (643)
+ |++++|+.++.
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 8 99999998763
No 215
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=5.5e-21 Score=179.48 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=114.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+..+||+++|++|||||||+++|++..+....+ +.+.... .+..+++.+.+|||||++.+...+..+++.+|++++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~-t~g~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISP-TLGFQIK--TLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCC-ccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3456899999999999999999999875432222 2222111 122346889999999998888888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh---cccceEEEeCcccCCC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQ 163 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 163 (643)
|||++++.+++.... |+..+.. ...++|+++|+||+|+..... . +....+.+.. ....+++++||++|.|
T Consensus 88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALS---E-EEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCC---H-HHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 999999999988774 5554422 235899999999999875421 1 2222222211 1123699999999999
Q ss_pred hhHHHHHHHH
Q 006490 164 VPDVFYYAQK 173 (643)
Q Consensus 164 i~~l~~~i~~ 173 (643)
++++|+++..
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 216
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=9.1e-21 Score=177.19 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|.+|||||||+++|.+..+.. +.||++..+. .++. ....+.+||++|++.+... +..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~--~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPL--WKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchH--HHHHhccCCEEEEE
Confidence 58999999999999999999987653 4566654432 3333 4567889999999877666 67888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-----CCcEEeeeccC-CHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK-DLN 578 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSa~~g-~i~ 578 (643)
+|++++.++.....|+..+.+..... +.|+++|+||+|+... ...++..++++..+. ..+++|||++| |++
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELR--DALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhC--CCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence 99999999999999888886543222 6899999999999643 223444454432221 13778999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 151 ~~f~~l~~~~~ 161 (169)
T cd04158 151 EGLDWLSRQLV 161 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 217
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=1.9e-20 Score=177.28 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=121.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
.+||+++|.+|||||||++++.+..+... .||.+.......+.. ++....+.+||++|++.+..+ +..+++.||++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL--WKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--HHHHhccCCEE
Confidence 47999999999999999999999887644 466554443333333 334567889999999888776 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-----CCcEEeeeccC-
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKSK- 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSa~~g- 575 (643)
++|+|++++.+++....|+..+....... ++|+++|+||+|+.... ..+..+.+...... .+++++||++|
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNAL-SVSEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcC--CCcEEEEEECcCccccC-CHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence 99999999988888888888776654333 79999999999986421 12233333321111 13789999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|+++++++|.+.+.
T Consensus 157 gi~~l~~~l~~~l~ 170 (183)
T cd04152 157 GLQEGLEKLYEMIL 170 (183)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 218
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=4.5e-21 Score=181.13 Aligned_cols=162 Identities=25% Similarity=0.309 Sum_probs=137.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
..+||+++|.+|||||+|..++++..|.+.+.++.+ ..+....++++.+.+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 468999999999999999999999999999655554 4557777888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHH-HhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQSTLSRLSSYWLPEL-RRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l-~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|+++++.||+.+.. +...+ +... .++|++|||||+|+...+.+ . .+....++..++ .+++|+||+.+.+|+++
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V-~-~eeg~~la~~~~--~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV-S-EEEGKALARSWG--CAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc-C-HHHHHHHHHhcC--CcEEEeeccCCcCHHHH
Confidence 99999999999996 55555 3333 46899999999999987766 3 444566777776 35999999999999999
Q ss_pred HHHHHHHHhC
Q 006490 168 FYYAQKAVLH 177 (643)
Q Consensus 168 ~~~i~~~~~~ 177 (643)
|..+.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999997755
No 219
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=8.3e-21 Score=182.22 Aligned_cols=161 Identities=21% Similarity=0.257 Sum_probs=120.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
||+++|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||...+......++..+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 699999999999999999999988766544333222 2223334457899999999998888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
+++.+++.+. .|...+.... .++|+++|+||+|+......+......+.....++ .+++++||++|.|++++|++
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN--CGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHHH
Confidence 9999999987 4777665532 47999999999998653222122222221111222 36899999999999999999
Q ss_pred HHHHHhC
Q 006490 171 AQKAVLH 177 (643)
Q Consensus 171 i~~~~~~ 177 (643)
+.+.+..
T Consensus 158 l~~~~~~ 164 (198)
T cd04147 158 LLRQANL 164 (198)
T ss_pred HHHHhhc
Confidence 9987653
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.86 E-value=9.8e-21 Score=179.07 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
.||+|+|++|||||||++++++..+...+.++.. ............+.+.+|||||+.++......++..+|++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999999887665444332 223333444456778999999999888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
+++..+++.+...|...++... .+.|+|+|+||+|+...+.. ..+....+...++ .+++++||++|.|+.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFEL 157 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 9999999999864444444432 47899999999998754333 2233455555555 36899999999999999999
Q ss_pred HHHHHhC
Q 006490 171 AQKAVLH 177 (643)
Q Consensus 171 i~~~~~~ 177 (643)
+.+.+..
T Consensus 158 l~~~~~~ 164 (180)
T cd04137 158 LIEEIEK 164 (180)
T ss_pred HHHHHHH
Confidence 9987653
No 221
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=1.1e-20 Score=177.56 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=117.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+++|++|||||||+++|.+..+. .+.||.+ +....+... ...+.+||++|++.+..+ +..+++.+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~--~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPY--WRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCC
Confidence 345689999999999999999999988553 3445554 333344443 466789999999887776 677899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-----hCCCCcEEeeecc
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKS 574 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~ 574 (643)
++++|+|++++.+|+....|+..+....... +.|+++|+||+|+.... ..+....+... .++ +++++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGAL-SEEEIREALELDKISSHHW-RIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCC-CHHHHHHHhCccccCCCce-EEEeccCCC
Confidence 9999999999999998888887775432222 79999999999997533 22333333322 122 499999999
Q ss_pred C-CHHHHHHHHHH
Q 006490 575 K-DLNNVFSRIIW 586 (643)
Q Consensus 575 g-~i~~l~~~l~~ 586 (643)
| |++++|+++..
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9 99999999864
No 222
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.86 E-value=6.2e-21 Score=176.31 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=112.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
||+|+|++|||||||++++....+....|+. +.... .+...++.+.+|||||+..+...+..+++.+|++|+|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCcc-CcCeE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 6999999999999999999887765433332 21111 23446788999999999988888899999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChhHHHHH
Q 006490 94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
++.++......|...++.. ..++|+++|+||+|+.+... ..+....+... .. ...++++|||++|.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 9888777665555555432 24799999999999865321 11111111110 11 0125999999999999999998
Q ss_pred HHH
Q 006490 171 AQK 173 (643)
Q Consensus 171 i~~ 173 (643)
+.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 864
No 223
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=6.5e-21 Score=180.53 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|++|||||||++++....+....|+...... ..... ...++.+.+|||||++.+...+..+++.+|++|+|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999887655443221211 22222 33578899999999998888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHH--hhcc--cceEEEeCcccCCC
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMIQ 163 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~Sa~~~~g 163 (643)
||++++.+++.+.. |+..+... ..++|+++|+||+|+..... .++ .+.+.. .... ..++++|||++|.|
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALS---VSE-VEKLLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCC---HHH-HHHHhCccccCCCCceEEEEeecccCCC
Confidence 99999988888764 66555432 24799999999999864321 111 222211 1111 12478999999999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
++++++++.+.+.
T Consensus 158 i~~l~~~l~~~l~ 170 (183)
T cd04152 158 LQEGLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 224
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.86 E-value=4.9e-21 Score=177.71 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+|+++|++|||||||+++|++..+ ...+.++.+.... .+...++.+.+|||||.+.+...+..+++.+|++|+|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998763 3333333332221 2345678899999999999988999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc-ccceEEEeCcccCCChhH
Q 006490 93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR-EIETCVECSATTMIQVPD 166 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~gi~~ 166 (643)
+++.++..... |+..+... ..++|+++|+||+|+...... .+....+. .... ....++++||++|.|+++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 99988887764 65555331 247999999999998754221 11111110 0101 112489999999999999
Q ss_pred HHHHHHH
Q 006490 167 VFYYAQK 173 (643)
Q Consensus 167 l~~~i~~ 173 (643)
+|+++.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9998753
No 225
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.86 E-value=5.5e-20 Score=178.98 Aligned_cols=162 Identities=17% Similarity=0.278 Sum_probs=135.0
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+++|++|||||||+++++.+.+...+.+|.+..+....+...++...+.+||++|++.+..+ +..++..+|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~--~~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL--RDGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHhccCC
Confidence 345689999999999999999999988888778788887776666666667788889999999888776 677888999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
++++|||++++.+|..+..|+..+..... +.|+++|+||+|+...... .....+++..++. ++++||++| |++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~i~lv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE----NIPIVLVGNKVDVKDRQVK-ARQITFHRKKNLQ-YYDISAKSNYNFE 157 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccCccccCC-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999998876643 7999999999998653322 2334566777776 899999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|.+|++.+.
T Consensus 158 ~~f~~ia~~l~ 168 (215)
T PTZ00132 158 KPFLWLARRLT 168 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 226
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=4.8e-20 Score=179.40 Aligned_cols=167 Identities=14% Similarity=0.241 Sum_probs=130.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (643)
Q Consensus 6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (643)
+......+||+++|++|||||||+++++.+.+...+.++.+... .....+.+.+.+.+|||+|.+.+......++..+
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 45667779999999999999999999988877665544444333 2223356678999999999988888888899999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+++++|||+++..++..+. .|...+.....+.|+++|+||+|+.... . . .+. ..+....+ ..++++||++|.|
T Consensus 83 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~~-~~~~~~~~--~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-ARQ-ITFHRKKN--LQYYDISAKSNYN 155 (215)
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-C-C-HHH-HHHHHHcC--CEEEEEeCCCCCC
Confidence 9999999999999999987 5988887766789999999999986432 1 1 121 23344433 3689999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 006490 164 VPDVFYYAQKAVLHPT 179 (643)
Q Consensus 164 i~~l~~~i~~~~~~~~ 179 (643)
++++|.++++.+....
T Consensus 156 v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 156 FEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999876543
No 227
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.6e-22 Score=168.41 Aligned_cols=162 Identities=14% Similarity=0.244 Sum_probs=135.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc--CC-------CcEEEEEEecCCchhhhhhhccHH
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ--PG-------GNKKTLILQEIPEEGVKKILSNKE 493 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~--~g-------~~~~~~i~d~~g~~~~~~~~~~~~ 493 (643)
-+|.+.+|++||||||++.++..+.|......|.+.++..+.+-. .| .+..+.+|||+|++++.++ +..
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL--TTA 86 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL--TTA 86 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH--HHH
Confidence 468889999999999999999999988777667776665443322 11 1234568999999999999 888
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeee
Q 006490 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa 572 (643)
.+++|-+++++||.++..||-++++|+..+..+.=.. +.-+|+++||+||.+.+++ .+++.+++.+++++ ++++||
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA 163 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSA 163 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeecc
Confidence 9999999999999999999999999999987655443 6789999999999987766 77899999999998 999999
Q ss_pred ccC-CHHHHHHHHHHHHh
Q 006490 573 KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~ 589 (643)
-+| |+++..+.|...+.
T Consensus 164 ~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVM 181 (219)
T ss_pred ccCcCHHHHHHHHHHHHH
Confidence 999 99888877776553
No 228
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.85 E-value=9.8e-21 Score=174.60 Aligned_cols=155 Identities=23% Similarity=0.325 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
+||+++|++|||||||+|++.+..+.....++.+... .........+.+.+||+||...+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999987666333333322 22233345688999999999888888889999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+...... ..+....+....+ .+++++||+++.|++++++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence 9999999999885 988887764 57999999999999743333 2344555666543 4799999999999999999
Q ss_pred HHH
Q 006490 170 YAQ 172 (643)
Q Consensus 170 ~i~ 172 (643)
++.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 875
No 229
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.85 E-value=1.1e-20 Score=174.74 Aligned_cols=156 Identities=20% Similarity=0.340 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
||+|+|++|||||||++++++..+...+.++..... ....+....+.+.+||+||...+......+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 699999999999999999999887666555444222 2233334467899999999988888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
+++.+++.+.. |...+.... ...|+++|+||+|+...... ..+....+..+++ .+++++||+++.|+++++++
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence 99999999885 555554432 47999999999999864433 2334555556555 47999999999999999999
Q ss_pred HHHH
Q 006490 171 AQKA 174 (643)
Q Consensus 171 i~~~ 174 (643)
+.+.
T Consensus 156 l~~~ 159 (160)
T cd00876 156 LVRE 159 (160)
T ss_pred HHhh
Confidence 8764
No 230
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=2.2e-20 Score=173.27 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+|+++|++|||||||+++|.+..+ ...+.||.+... ..+.. ....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGL--WEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHH--HHHHHccCCEEEE
Confidence 589999999999999999999763 444556665432 22332 4567789999999888777 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH---hCCC-CcEEeeeccC-CHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIE-PPIPVSMKSK-DLN 578 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~vSa~~g-~i~ 578 (643)
|+|++++.++.....|+..+.+.......++|+++|+||+|+..... .+........ .... +++++||++| |++
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 99999999988888888777553211112799999999999875322 1121111110 1111 3789999999 999
Q ss_pred HHHHHHHH
Q 006490 579 NVFSRIIW 586 (643)
Q Consensus 579 ~l~~~l~~ 586 (643)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 231
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=5.7e-22 Score=173.00 Aligned_cols=160 Identities=18% Similarity=0.329 Sum_probs=146.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+|++|+|..+|||||++.+++.+-|...|..|++.++....+.+.+......+||++|++++..+ +..++++|.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--tkAyyrgaqa~ 96 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--TKAYYRGAQAS 96 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--HHHHhccccce
Confidence 4699999999999999999999999999999889998888877777766667778999999999999 88999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++||+.+|..||+....|.+.+..... .+|.|+|-||+|+.++.+. ..+++.+++.+.+. ++.+|++.. |+..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~~ 171 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVMH 171 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhHH
Confidence 999999999999999999999988776 8999999999999987666 77889999999998 999999999 9999
Q ss_pred HHHHHHHHH
Q 006490 580 VFSRIIWAA 588 (643)
Q Consensus 580 l~~~l~~~~ 588 (643)
+|.+|++.+
T Consensus 172 vF~YLaeK~ 180 (246)
T KOG4252|consen 172 VFAYLAEKL 180 (246)
T ss_pred HHHHHHHHH
Confidence 999999865
No 232
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=1.4e-20 Score=176.72 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=115.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+..+||+++|++|||||||+++++.+.+....|+ .+... ..+..++..+.+|||||+..+...+..+++.+|++++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPT-IGSNV--EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCc-cccce--EEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 3468999999999999999999998887654333 22222 23444578899999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChhH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD 166 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~~ 166 (643)
+|++++.++......|...++.. ..++|+++|+||+|+..... .++..+.+... .. ...++++|||++|.||++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999988888775455444432 24799999999999865311 12211222110 00 112589999999999999
Q ss_pred HHHHHHH
Q 006490 167 VFYYAQK 173 (643)
Q Consensus 167 l~~~i~~ 173 (643)
+|+++.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9998864
No 233
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=2.3e-20 Score=175.37 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=114.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||++++.++.+.. +.||.+.++. .+.. ....+.+||++|++.+... +..+++++|+++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSS--WNTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHH--HHHHhhcCCEEE
Confidence 5799999999999999999999887765 4466665443 2332 3467888999999888776 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-CH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g-~i 577 (643)
+|+|++++.++.....++..+.+..... ++|+++++||+|+.......+..+.+. +..++ ++++|||++| |+
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~--~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~gi 164 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLR--KAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQGCCALTGEGL 164 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEEecccCCCCCH
Confidence 9999999988888877777665433222 689999999999865221111122221 11222 3799999999 99
Q ss_pred HHHHHHHHH
Q 006490 578 NNVFSRIIW 586 (643)
Q Consensus 578 ~~l~~~l~~ 586 (643)
+++|++|.+
T Consensus 165 ~e~~~~l~~ 173 (174)
T cd04153 165 PEGLDWIAS 173 (174)
T ss_pred HHHHHHHhc
Confidence 999999864
No 234
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.7e-21 Score=158.85 Aligned_cols=161 Identities=22% Similarity=0.315 Sum_probs=135.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
-+|.+|+|+-|||||+|+..|+.++|..+-|-+.+... ....+.+..+++.||||+|++++...+..++++|.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 47899999999999999999999998777555444322 3346667889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
||++.+.++..+.. |+...+.. +++..++|++||.|+...+.+ .. +...+++++-+- .++++||++|.||++.|
T Consensus 91 yditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv-~y-eeak~faeengl--~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 91 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV-TY-EEAKEFAEENGL--MFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC-cH-HHHHHHHhhcCe--EEEEecccccCcHHHHH
Confidence 99999999999985 98888765 478889999999999988877 44 445667777663 58999999999999999
Q ss_pred HHHHHHHhC
Q 006490 169 YYAQKAVLH 177 (643)
Q Consensus 169 ~~i~~~~~~ 177 (643)
-+..+.+..
T Consensus 166 le~akkiyq 174 (215)
T KOG0097|consen 166 LETAKKIYQ 174 (215)
T ss_pred HHHHHHHHH
Confidence 888777653
No 235
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=1.8e-20 Score=173.60 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
+|+++|++|||||||+++|.+..+....|+. +........ ...+.+.+|||||+..+...+..++..+|++|+|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~-~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTV-GFNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCcc-CcceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 5899999999999999999999876554432 221111122 34678999999999888888888999999999999999
Q ss_pred CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc--ccceEEEeCcccCCChhHHH
Q 006490 94 QQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~Sa~~~~gi~~l~ 168 (643)
++.++..... |+..+ +.. ..+.|+++|+||+|+..... ..+....+. ..+. ...++++|||++|.|++++|
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 79 DEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred cHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9988888875 44444 322 24899999999999864311 111111110 1111 11258999999999999999
Q ss_pred HHHHH
Q 006490 169 YYAQK 173 (643)
Q Consensus 169 ~~i~~ 173 (643)
+++.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98753
No 236
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=5.9e-22 Score=164.25 Aligned_cols=156 Identities=21% Similarity=0.288 Sum_probs=129.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 16 VVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 16 ~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
.++|++++|||+|+-|+-.+.|... .+++.-..+ .-.+++...+++++|||+|++++.+.+..++++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999988877775443 333322333 4456677889999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYA 171 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 171 (643)
.++.||++.+. |+.++.++. ....+.+++||||+..++.+ ..+..+.+++.++ .|++++||++|.||+-.|..+
T Consensus 81 ankasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~--ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYG--IPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHC--CCceeccccccccHhHHHHHH
Confidence 99999999995 999998874 35778899999999887766 3444678888887 489999999999999999998
Q ss_pred HHHHh
Q 006490 172 QKAVL 176 (643)
Q Consensus 172 ~~~~~ 176 (643)
.+.+.
T Consensus 156 a~~l~ 160 (192)
T KOG0083|consen 156 AEELK 160 (192)
T ss_pred HHHHH
Confidence 88764
No 237
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.84 E-value=1.6e-20 Score=175.10 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=115.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
+|+++|++|||||||+++|.+. +...+.++.+.... .+..+++.+.+|||||...+...+..+++.+|++|+|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999977 44444443443332 34456789999999999888888999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhh--hhhHHHHhhcccceEEEeCcccC------CC
Q 006490 94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ 163 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~------~g 163 (643)
++.+++.+.. |+..+... ..++|+++|+||+|+..........+ .+..++++.+....+++|||++| .|
T Consensus 78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 9999998875 76666543 24799999999999976542201111 11222222222235788999998 89
Q ss_pred hhHHHHHHHH
Q 006490 164 VPDVFYYAQK 173 (643)
Q Consensus 164 i~~l~~~i~~ 173 (643)
+.+.|+|+..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 238
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.84 E-value=8.4e-21 Score=174.36 Aligned_cols=163 Identities=23% Similarity=0.405 Sum_probs=143.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEc-CCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
.+|++|||+.++|||+|+..+..+.|...|.||.-+.+... +.+ .|....+-+|||+|++.|..+ +...+.++|++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrl--RplsY~~tdvf 80 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRL--RPLSYPQTDVF 80 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccc--cccCCCCCCEE
Confidence 57999999999999999999999999999999988777655 445 367778889999999999987 56799999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490 502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~ 567 (643)
+++|++.++.||+++. +|+.++..+++ +.|+|+|++|.||..+. ...++...+++++|...+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 9999999999999965 59999999986 89999999999998532 226788999999998779
Q ss_pred EEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 568 IPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
++|||++. |++++|+..+..+..+.
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999 99999999999887554
No 239
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=3.7e-20 Score=171.44 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=113.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
+|+++|.+|||||||+++|.++.+... .||.+.. ...+..+ ....+.+||++|++.+... +..++..+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~--~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTV--WKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHH--HHHHhccCCEEEEE
Confidence 589999999999999999999987643 3565533 3445544 5567889999999887776 66788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH-----HHHhCCCCcEEeeeccC-CHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV-----TQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+|++++.++.....|+..+.+..... +.|+++|+||+|+.......+....+ +...++ ++++|||++| |++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 151 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLA 151 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcE-EEEecccccCCChH
Confidence 99999998888888887776532222 79999999999986422111111111 111122 3889999999 999
Q ss_pred HHHHHHHH
Q 006490 579 NVFSRIIW 586 (643)
Q Consensus 579 ~l~~~l~~ 586 (643)
++|++|.+
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999864
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=5e-20 Score=188.06 Aligned_cols=204 Identities=20% Similarity=0.210 Sum_probs=149.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN------- 77 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 77 (643)
...+.++||+|+|+||||||||+|.|++.+ ++.+.||++.+ .+...+..+|+++.++||+|+.+..+..+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-viee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-VIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-eEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 456889999999999999999999999988 67777773322 27778889999999999999987666554
Q ss_pred -HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490 78 -EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 78 -~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
..+++||++++|+|.+.+.+-.+.. .+. ....++|+++|.||+|+...... . .. +...-.+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEEE
Confidence 6789999999999998874444433 222 22347999999999999875332 1 11 11111258999
Q ss_pred CcccCCChhHHHHHHHHHHhCC-C---CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhh
Q 006490 157 SATTMIQVPDVFYYAQKAVLHP-T---APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKC 225 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~~~-~---~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~ 225 (643)
||++|.|++.|.+.+.+.+... . .....+.++ .....+..+++......+......+..++++..+..+
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~L 430 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEAL 430 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHH
Confidence 9999999999999998877554 1 122223333 3567777778777766665557788888888777654
No 241
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-21 Score=167.23 Aligned_cols=160 Identities=17% Similarity=0.254 Sum_probs=131.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-e-eCCccc---------CCceeEEEEeCCCCCcchhhhHHhh
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-R-LPPDFY---------PDRVPVTIIDTSSSLENKGKLNEEL 80 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~-~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~~~ 80 (643)
-+|...+|++||||||++.+++.++|....-++.+.. + +...+. ...+.+.+|||+|++++.+++..++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 3578889999999999999999999876633333322 2 111111 2246688999999999999999999
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
++|-+++++||+++..||.++.. |+..++. +|.+.-||+++||+|+.+.+.+ .++....++.+++ .||+++||
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kyg--lPYfETSA 163 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYG--LPYFETSA 163 (219)
T ss_pred HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhC--CCeeeecc
Confidence 99999999999999999999996 9999965 5778889999999999987776 5566788999998 48999999
Q ss_pred ccCCChhHHHHHHHHHHh
Q 006490 159 TTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~ 176 (643)
-+|.||++..+.+...++
T Consensus 164 ~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVM 181 (219)
T ss_pred ccCcCHHHHHHHHHHHHH
Confidence 999999998887776654
No 242
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=5.2e-20 Score=187.92 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=137.8
Q ss_pred hhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh--
Q 006490 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-- 487 (643)
Q Consensus 415 ~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~-- 487 (643)
++++..+.++|++|+|+||||||||+|+|++++++++++ |.|+.++....+.+.| ..+.++||+|-.+ .+.
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iG 286 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIG 286 (454)
T ss_pred hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHH
Confidence 445667889999999999999999999999999999998 5444445566677764 4566799999432 222
Q ss_pred hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCc
Q 006490 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPP 567 (643)
Q Consensus 488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 567 (643)
+.++...+++||.+++|+|++++.+ +.....+. ... . ++|+++|.||.||..+... ..+ +..+-.++
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~-~~d~~~~~-~~~----~--~~~~i~v~NK~DL~~~~~~----~~~-~~~~~~~~ 353 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLD-KEDLALIE-LLP----K--KKPIIVVLNKADLVSKIEL----ESE-KLANGDAI 353 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCc-hhhHHHHH-hcc----c--CCCEEEEEechhccccccc----chh-hccCCCce
Confidence 4568889999999999999999633 22222222 111 1 7999999999999875432 111 11111248
Q ss_pred EEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVGAA 623 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 623 (643)
+.+||++| |++.+.+.|.+.+... .......-.++.|+.++++++..++..+..
T Consensus 354 i~iSa~t~~Gl~~L~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~ 408 (454)
T COG0486 354 ISISAKTGEGLDALREAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQAAEHLEDALQ 408 (454)
T ss_pred EEEEecCccCHHHHHHHHHHHHhhc--ccccccceeecHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999988644 122223344667888999988888776543
No 243
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.84 E-value=4.4e-20 Score=176.21 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=115.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+..||+|+|++|||||||++++.+..+....|+ .+... ..+..+++.+.+|||||+..+...+..+++.+|++++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T-~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPT-LHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCc-cCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35579999999999999999999998876432332 22222 2334456889999999998887778889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHh-c-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--------------cccce
Q 006490 89 TYACNQQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIET 152 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~-~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 152 (643)
|+|+++..+++.... |+..+.. . ..+.|+++|+||+|+... + .. +.++.+.... .....
T Consensus 93 V~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T cd00879 93 LVDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA--V-SE-EELRQALGLYGTTTGKGVSLKVSGIRPIE 167 (190)
T ss_pred EEECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC--c-CH-HHHHHHhCcccccccccccccccCceeEE
Confidence 999999988887765 4444432 2 247999999999998642 1 12 2233333211 11125
Q ss_pred EEEeCcccCCChhHHHHHHHHH
Q 006490 153 CVECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
+++|||++|+|++++|+++.+.
T Consensus 168 ~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 168 VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEeEecCCCChHHHHHHHHhh
Confidence 8999999999999999998764
No 244
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.84 E-value=1e-19 Score=173.31 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=121.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-----CCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-----g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
+||+++|.++||||||+++++++.+...+.+|++.++....+... +....+.+||++|++.+..+ +..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--RAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH--HHHHhCcC
Confidence 489999999999999999999999988887888876766666553 34567789999999999887 77899999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcC----------------CCCCCCcEEEEEeCCCCCCcccc-----HHHHHH
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE----------------DSGYGVPCLLIASKDDLKPYTMA-----VQDSAR 557 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~----------------~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~ 557 (643)
|++|+|||++++.||+.+..|+.++..... ....+.|++||+||+|+.+++.. ......
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999876421 01126899999999999765432 234557
Q ss_pred HHHHhCCCCcEEeeeccC
Q 006490 558 VTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 558 ~~~~~~~~~~~~vSa~~g 575 (643)
++++.+.+ .++.+++.+
T Consensus 159 ia~~~~~~-~i~~~c~~~ 175 (202)
T cd04102 159 VAEQGNAE-EINLNCTNG 175 (202)
T ss_pred HHHhcCCc-eEEEecCCc
Confidence 78889988 788888753
No 245
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=4.7e-20 Score=174.73 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=114.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+.++|+++|.+|||||||++++.+..+....|+ .+.+. ..+..+++++.+|||||+..+...+..+++.+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPT-QHPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCc-cccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 5569999999999999999999998876433232 22222 22334578899999999988888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHH--Hhh-------cccceEEEeCcc
Q 006490 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQF-------REIETCVECSAT 159 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~Sa~ 159 (643)
+|++++.++......+...++. ...++|+++|+||+|+.... ..++..+.+. +.. .....+++|||+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 9999998888877533333332 12479999999999986431 1222111110 000 012358999999
Q ss_pred cCCChhHHHHHHHHH
Q 006490 160 TMIQVPDVFYYAQKA 174 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (643)
+|.|++++++++.+.
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999764
No 246
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=2.9e-20 Score=167.08 Aligned_cols=147 Identities=21% Similarity=0.323 Sum_probs=108.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhh--
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL-- 495 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~-- 495 (643)
++|+++|.||||||||+|+|+|.+......|.++.+...-.+... ...+.++|+||..... .+ +..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence 589999999999999999999998554444655555555556655 2677789999843222 23 33444
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
.+.|++++|+|+++. +....+..++.+. ++|+++|+||+|+..++......+.+.+.+|++ ++++||+++
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~~~ 146 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSARTG 146 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTT
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeCCC
Confidence 689999999999884 4444555666665 899999999999987666666788899999997 999999999
Q ss_pred -CHHHHHHHH
Q 006490 576 -DLNNVFSRI 584 (643)
Q Consensus 576 -~i~~l~~~l 584 (643)
|+++++++|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 999999875
No 247
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=1.5e-19 Score=167.07 Aligned_cols=149 Identities=23% Similarity=0.253 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|++|||||||++++..+.+.. +.||++.+. ..++. ....+.+||++|++.+..+ +..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPY--WRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhcCCCEEEEE
Confidence 68999999999999999998877653 345655443 23333 3467889999999888776 77889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeeccC-C
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK-D 576 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~~g-~ 576 (643)
+|++++.++.....++..+.+..... ++|+++|+||+|+...... .++.+.++. .++++|||++| |
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMPGALSE----AEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCCCCCCH----HHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99999888776666555443322112 7899999999998753211 122222221 14899999999 9
Q ss_pred HHHHHHHHHH
Q 006490 577 LNNVFSRIIW 586 (643)
Q Consensus 577 i~~l~~~l~~ 586 (643)
++++|++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 248
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=1.6e-19 Score=171.02 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=114.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..++|+++|.+|||||||++++.++.+.. +.||.... ...+.. +..++.+||++|++.+..+ +..++..+|++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~ad~i 88 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRL--WKDYFPEVNGI 88 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHH--HHHHhCCCCEE
Confidence 34899999999999999999999987653 33554432 222333 3467788999999887776 67889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------------CCc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------------EPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------~~~ 567 (643)
++|+|++++.++.....++..+.+..... ++|+++|+||+|+.... ..+ ++.+.+++ ..+
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~-~~~---~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELA--TVPFLILGNKIDAPYAA-SED---ELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCC-CHH---HHHHHcCCCcccccccccCCceeEE
Confidence 99999999998888888777765432222 78999999999986421 122 23333322 138
Q ss_pred EEeeeccC-CHHHHHHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~ 587 (643)
++|||++| |+++++++|.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 99999999 999999999764
No 249
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.83 E-value=1.1e-19 Score=168.03 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
||+++|.+|||||||++++++..+....++ .+.... .+...+..+.+|||||...+...+..+++.+|++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPT-IGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-cCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 699999999999999999999874332222 222221 23345688999999999988888899999999999999999
Q ss_pred CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh--hcccceEEEeCcccCCChhHHHH
Q 006490 94 QQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
++.++..... |+..+ +.. ..+.|+++|+||+|+...... ++....+... .....+++++||++|.|++++|+
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999998875 44444 322 348999999999998764321 1211221111 11223699999999999999999
Q ss_pred HHHH
Q 006490 170 YAQK 173 (643)
Q Consensus 170 ~i~~ 173 (643)
++..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8764
No 250
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=2.5e-20 Score=167.47 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHh--hccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEE--LKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~--~~~a 83 (643)
++|+++|+||||||||||+|++.+ .+.++|+++.. ...+.+...+..+.++|+||...... ....+ ...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 589999999999999999999998 34557875433 35556666678999999999754322 22233 3689
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
|++++|+|+++.+.- . ++..++.+. ++|+++|.||+|....... .. ....+.+.++ .+++++||+++.|
T Consensus 80 D~ii~VvDa~~l~r~---l-~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~i--d~~~Ls~~Lg--~pvi~~sa~~~~g 148 (156)
T PF02421_consen 80 DLIIVVVDATNLERN---L-YLTLQLLEL--GIPVVVVLNKMDEAERKGI-EI--DAEKLSERLG--VPVIPVSARTGEG 148 (156)
T ss_dssp SEEEEEEEGGGHHHH---H-HHHHHHHHT--TSSEEEEEETHHHHHHTTE-EE---HHHHHHHHT--S-EEEEBTTTTBT
T ss_pred CEEEEECCCCCHHHH---H-HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-EE--CHHHHHHHhC--CCEEEEEeCCCcC
Confidence 999999998774322 2 356666666 8999999999998765544 22 2456677776 4799999999999
Q ss_pred hhHHHHHH
Q 006490 164 VPDVFYYA 171 (643)
Q Consensus 164 i~~l~~~i 171 (643)
+++|++.|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998864
No 251
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.83 E-value=7.7e-20 Score=174.16 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=113.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcc-----cCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
+||+++|++|||||||+++++++.|...+.++.+... ....+ ....+.+.||||+|++.+......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998777555444221 11222 2356789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhc--------------------CCCCcEEEEEecccCCCCCccchhhh---hhhH
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLEE---VMGP 142 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~pvilv~NK~D~~~~~~~~~~~~---~~~~ 142 (643)
+|+|||++++.+++++. .|++.+... ..+.|++|||||+|+...+.. .... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence 99999999999999997 699998652 246899999999999765433 2221 2345
Q ss_pred HHHhhcccceEEEeCcccCCCh
Q 006490 143 IMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++++++. +.++.++.+...+
T Consensus 159 ia~~~~~--~~i~~~c~~~~~~ 178 (202)
T cd04102 159 VAEQGNA--EEINLNCTNGRLL 178 (202)
T ss_pred HHHhcCC--ceEEEecCCcccc
Confidence 6677763 5777887765443
No 252
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=5.9e-20 Score=171.42 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPE------KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
+|+|+|++|||||||+++|++..... .+.++.+. ....+..++..+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGL--NIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCcccc--ceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 58999999999999999998753210 11111111 11223345789999999999988888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----c-ccceEEEeCccc
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATT 160 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~Sa~~ 160 (643)
+|+|++++.+++.... |+..+.+. ..++|+++|+||+|+..... ..+ ...+.... + ...+++++||++
T Consensus 79 ~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 79 YVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALS---VEE-IKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCC---HHH-HHHHhccccccccCCceEEEEeeCCC
Confidence 9999999888888765 44444322 24799999999999865421 112 22222221 1 112699999999
Q ss_pred CCChhHHHHHHHH
Q 006490 161 MIQVPDVFYYAQK 173 (643)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (643)
|.|++++++++.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999998864
No 253
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=8.2e-20 Score=170.29 Aligned_cols=153 Identities=23% Similarity=0.238 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
+|+++|.+|||||||+++|.+. +...+.||.+.. ...+.. ....+.+||++|++.+..+ +..+++.||++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGI--WVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHH--HHHHHcCCCEEEEE
Confidence 4899999999999999999987 555566776643 233443 3467889999999888877 78899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-----HHHHHHhCCC-CcEEeeeccC---
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-----ARVTQELGIE-PPIPVSMKSK--- 575 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~-~~~~vSa~~g--- 575 (643)
||++++.+++....|+..+....... ++|+++|+||+|+.......+.. +.++++.+.. ++++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVS--GKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCcccc--CCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 99999999999999998887653322 78999999999997644222222 2233223332 4778999995
Q ss_pred ----CHHHHHHHHHH
Q 006490 576 ----DLNNVFSRIIW 586 (643)
Q Consensus 576 ----~i~~l~~~l~~ 586 (643)
|+.+.|+||.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 69999999865
No 254
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=2.2e-19 Score=171.41 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=117.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+.+||+++|++|||||||++++.+..+. .+.||.+... ..+... ...+.+||++|++.+..+ +..+++++|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i 90 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRL--WKDYFPEVDGI 90 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 4579999999999999999999998764 3445655432 233444 356778999999887766 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--------------C-CC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--------------I-EP 566 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------~-~~ 566 (643)
++|+|+++..+++....++..+.+..... +.|+++|+||+|+... ...+..+.+..... . .+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELA--NVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIE 167 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCcccc--CCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEE
Confidence 99999999988888888888776543322 7999999999998642 22334444433211 1 14
Q ss_pred cEEeeeccC-CHHHHHHHHHHH
Q 006490 567 PIPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 567 ~~~vSa~~g-~i~~l~~~l~~~ 587 (643)
+++|||++| |++++|++|.+.
T Consensus 168 ~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 168 VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEeEecCCCChHHHHHHHHhh
Confidence 799999999 999999999764
No 255
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=3.4e-19 Score=183.93 Aligned_cols=182 Identities=17% Similarity=0.221 Sum_probs=127.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-hhhh----h-ccH
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKI----L-SNK 492 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-~~~~----~-~~~ 492 (643)
...++|+++|+||||||||+|+|++..+..+++ + ||+ +.....+..+ ..++.+|||+|... +..+ . ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 345799999999999999999999998876655 3 333 3333445554 24678899999742 2221 1 133
Q ss_pred HhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC-CCCcEEe
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPV 570 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v 570 (643)
.++..||++++|+|+++. +... ..|+..+... +.|+++|+||+|+... ......+++...+ ..+++++
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence 567899999999998764 3333 3455555443 6788899999998653 2233444444443 3458999
Q ss_pred eeccC-CHHHHHHHHHHHH-hCCCCCCCCcccccchh-hhhhhhchhh
Q 006490 571 SMKSK-DLNNVFSRIIWAA-EHPHLNIPETETGRNRK-RYRHLVNSSL 615 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 615 (643)
||++| |+++++++|.+.+ .++..++++..++.+.+ ...+++++.+
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~ 244 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQL 244 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999 9999999999966 57788888888887766 4566666655
No 256
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2e-19 Score=173.44 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=127.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEEL 80 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 80 (643)
+.-.|+|+|+||||||||+|++++.+.... .+. ++..++.+.+..++..+.++||||+..... .....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q-TTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc-hhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 334699999999999999999999995433 333 122226666777788999999999875432 223678
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
.++|+++||+|++...+..+ ..+++.++.. +.|+++++||+|....... .....+.+...+. +...+++||++
T Consensus 84 ~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA~~ 156 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISALK 156 (298)
T ss_pred ccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeeccc
Confidence 99999999999887544433 2466777663 7899999999998876432 1233333434433 44799999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALK 199 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (643)
|.|++.|.+.+...+ .+.+++|+.+.....+....+.+
T Consensus 157 g~n~~~L~~~i~~~L-peg~~~yp~d~itD~~~rf~~aE 194 (298)
T COG1159 157 GDNVDTLLEIIKEYL-PEGPWYYPEDQITDRPERFLAAE 194 (298)
T ss_pred cCCHHHHHHHHHHhC-CCCCCcCChhhccCChHHHHHHH
Confidence 999999998776654 45566677766665555544443
No 257
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.82 E-value=2.7e-19 Score=165.31 Aligned_cols=153 Identities=24% Similarity=0.238 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||+++|.+|||||||++++++.... .+.+|.+... ..+.. ....+.+||++|++.+..+ +...++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPL--WKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHH--HHHHhccCCEEEEE
Confidence 6899999999999999999998733 3334544332 33333 3457788999999888777 67788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH---hCCCCcEEeeeccC-CHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~vSa~~g-~i~~l 580 (643)
+|++++.++.....++..+....... +.|+++|+||+|+.......+....+... ....+++++||++| |++++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELK--GVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence 99999999998888888776644333 79999999999987643222222222111 11125899999999 99999
Q ss_pred HHHHHH
Q 006490 581 FSRIIW 586 (643)
Q Consensus 581 ~~~l~~ 586 (643)
|++|..
T Consensus 152 ~~~l~~ 157 (158)
T cd00878 152 LDWLLQ 157 (158)
T ss_pred HHHHhh
Confidence 999875
No 258
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=2e-19 Score=185.63 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcc-hhhh-------HHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLEN-KGKL-------NEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~~~-------~~~ 79 (643)
.+.++|+|+|+||||||||+|+|++..+....+. ..+|+ ....+..++..+.+|||||+.+. .... ..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k-~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK-VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC-CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4456999999999999999999999886432221 22222 22344556778999999998532 1111 135
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
+.++|++|+|+|..+ ++......|++.++.. +.|+++|+||+|+... ...+ +............++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----~~~~-~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK----YLND-IKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc----cHHH-HHHHHHhcCCCcEEEEEecc
Confidence 789999999999554 4555544577777765 6788999999998642 1222 23333333222468999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCCccccccchHH
Q 006490 160 TMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPR 193 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 193 (643)
+|.|++++++++...+. +.+++|+.+.....+.
T Consensus 200 tg~gv~eL~~~L~~~l~-~~~~~~~~~~~td~~~ 232 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK-ISPWLYAEDDITDLPM 232 (339)
T ss_pred CccCHHHHHHHHHHhCC-CCCCCCCCCCCCCCCH
Confidence 99999999999987665 4556776666554433
No 259
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=7.8e-21 Score=165.95 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=140.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
.....+|++|+|..+|||||++++++.+-|..++..+.+... ....+..+.+++.+|||+|++++...+..++++|.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 345568999999999999999999999988888776655544 334556678889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
.++||+.+++.||+...+ |.+.+...+..+|.++|-||+|+.++..+ ....++.+++.+.. .++.+|++...||.
T Consensus 96 ~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKEDFNVM 170 (246)
T ss_pred eEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhhhhhH
Confidence 999999999999999985 99999988889999999999999987665 44556777777653 58999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
.+|..++..+.
T Consensus 171 ~vF~YLaeK~~ 181 (246)
T KOG4252|consen 171 HVFAYLAEKLT 181 (246)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 260
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=2e-19 Score=167.78 Aligned_cols=153 Identities=25% Similarity=0.358 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~------~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
+|+++|++|||||||+++|.+.... ..+.+|....+ ..+..+ ...+.+||++|++.+..+ +...+..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSL--WDKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHH--HHHHhCCC
Confidence 5899999999999999999874322 11223444333 233333 467788999999888776 67789999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCC--CCcEEeee
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGI--EPPIPVSM 572 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~vSa 572 (643)
|++++|+|++++.++.....++..+.+..... ++|+++|+||+|+.... .......+.+. .+. .+++++||
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEALE--GVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhhc--CCCEEEEEEccccccCC-CHHHHHHHhccccccccCCceEEEEeeC
Confidence 99999999999988888888887776543222 79999999999986532 22233333322 121 15899999
Q ss_pred ccC-CHHHHHHHHHH
Q 006490 573 KSK-DLNNVFSRIIW 586 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~ 586 (643)
++| |+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999 99999999864
No 261
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=4.3e-19 Score=178.40 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhccC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRA 83 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~a 83 (643)
+|+|+|+||||||||+|+|++..+. ...++++.. ........++..+.+|||||+..... ....+++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6999999999999999999998753 334443222 12233334556799999999864311 123568899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
|++++|+|+++..+.+ ..+...+... ++|+++|+||+|+..... .......+....+ ..+++++||++|.|
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~g 151 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGDN 151 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCCC
Confidence 9999999999876664 2466666665 799999999999864221 1222333333332 33689999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCccccccch
Q 006490 164 VPDVFYYAQKAVLHPTAPLFDHDEQTLK 191 (643)
Q Consensus 164 i~~l~~~i~~~~~~~~~~~~~~~~~~~~ 191 (643)
++++++.+.+.+. +.++.|+.+.....
T Consensus 152 i~~L~~~l~~~l~-~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 152 TSFLAAFIEVHLP-EGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHHHHHHhCC-CCCCCCCCcccCCC
Confidence 9999999887753 44455665544433
No 262
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=3e-19 Score=166.86 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---------hhHHhhccC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKRA 83 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~a 83 (643)
+|+++|++|||||||+|+|++..+... .+.+... .....+..+++.+.+|||||+..... ........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS-LFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc-eeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 699999999999999999999876322 2221111 11122334568999999999842110 011112336
Q ss_pred CEEEEEEECCCcccH--HHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 84 DAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 84 d~il~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
|++|+|+|++++.++ +... .|.+.++....++|+++|+||+|+...... . + ...+.. .+. .++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~-~~~-~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEE-LEG-EEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhh-hcc-CceEEEEeccc
Confidence 899999999987653 4444 478888665558999999999999754332 1 1 223322 222 36899999999
Q ss_pred CChhHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAV 175 (643)
Q Consensus 162 ~gi~~l~~~i~~~~ 175 (643)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988765
No 263
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=1.1e-19 Score=164.71 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=98.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch-----hhhhhhccHHhhccCC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD 499 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad 499 (643)
||+++|++|||||||+|+|.+..+. +.+|...++ . . .+||++|.. .+..+ ...+++||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-~----~~iDt~G~~~~~~~~~~~~---~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-D----GAIDTPGEYVENRRLYSAL---IVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-C----eeecCchhhhhhHHHHHHH---HHHhhcCC
Confidence 7999999999999999999988752 333433222 2 1 357888862 22222 24589999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
++++|||++++.++.. ..|...+ ..|+++|+||+|+.+.....+..+++++..+..+++++||++| |++
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~~---------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASIF---------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHhc---------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 9999999999988654 3343221 4599999999999754334556677788888766999999999 999
Q ss_pred HHHHHHH
Q 006490 579 NVFSRII 585 (643)
Q Consensus 579 ~l~~~l~ 585 (643)
++|+++.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 264
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=3e-19 Score=164.71 Aligned_cols=154 Identities=17% Similarity=0.224 Sum_probs=111.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490 15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 15 I~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~ 94 (643)
|+|+|++|||||||+|+|.+..+.....++.+.... .+..+++.+.+|||||...+...+..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 899999999999999999999877664443332222 233345889999999999888888999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHH-h-hcccceEEEeCcccCCChhHHHHHH
Q 006490 95 QSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-Q-FREIETCVECSATTMIQVPDVFYYA 171 (643)
Q Consensus 95 ~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Sa~~~~gi~~l~~~i 171 (643)
..++......+...+... ..++|+++|+||+|+...... .+....+.. . .....+++++||++|.|++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 888887764333333321 247899999999998654221 111111110 0 1111368999999999999999988
Q ss_pred HH
Q 006490 172 QK 173 (643)
Q Consensus 172 ~~ 173 (643)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 64
No 265
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=7.4e-19 Score=162.09 Aligned_cols=153 Identities=21% Similarity=0.266 Sum_probs=115.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEE
Q 006490 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505 (643)
Q Consensus 426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~ 505 (643)
|+|+|++|||||||+|+|.+.++...+.||.+..+. .++.+ ...+.+||++|++.+..+ +..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~--~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSM--WERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHH--HHHHHhcCCEEEEEE
Confidence 799999999999999999999988877777765543 23333 367889999999888776 678899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-Hh-C-CCCcEEeeeccC-CHHHHH
Q 006490 506 DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-EL-G-IEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 506 D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-~~-~-~~~~~~vSa~~g-~i~~l~ 581 (643)
|++++.++.....++..+....... ++|+++|+||+|+.......+....+.. .. . ..+++++||++| |+++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLE--GIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 9999888888777777665432222 7899999999998764322222212110 00 1 124799999999 999999
Q ss_pred HHHHH
Q 006490 582 SRIIW 586 (643)
Q Consensus 582 ~~l~~ 586 (643)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99865
No 266
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=5.8e-19 Score=182.33 Aligned_cols=157 Identities=23% Similarity=0.247 Sum_probs=111.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh------hhhhhccHHh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA 494 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~------~~~~~~~~~~ 494 (643)
...++|+|+|.||||||||+|+|++.+......+.++.+.....+.++++ ..+.+|||+|... .+.+.++...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 35689999999999999999999998754333343333455666777633 4678899999621 1223335567
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
+.+||++++|+|++++.+++....|...+..... . ++|+++|+||+|+..... ...+.. +..++++|||++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~--~~piIlV~NK~Dl~~~~~----v~~~~~--~~~~~i~iSAkt 336 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA-E--DIPQLLVYNKIDLLDEPR----IERLEE--GYPEAVFVSAKT 336 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-C--CCCEEEEEEeecCCChHh----HHHHHh--CCCCEEEEEccC
Confidence 8999999999999999887776655555544322 1 689999999999975321 111211 223589999999
Q ss_pred C-CHHHHHHHHHHH
Q 006490 575 K-DLNNVFSRIIWA 587 (643)
Q Consensus 575 g-~i~~l~~~l~~~ 587 (643)
| |++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 9 999999998764
No 267
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=6.3e-19 Score=164.97 Aligned_cols=161 Identities=18% Similarity=0.128 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhccCC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASCD 499 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~ad 499 (643)
.|+++|++|||||||+|+|.+........+.++....+..+... +...+.+|||+|... ...+ ......+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999876422222322222223334444 334678899999631 1111 11234456799
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|+|++++ .+++....|...+....... .++|+++|+||+|+.......+....+.......+++++||+++ |+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPEL-LEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccc-cccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 78888888988887654211 16899999999999775544455555555532234899999999 99
Q ss_pred HHHHHHHHHH
Q 006490 578 NNVFSRIIWA 587 (643)
Q Consensus 578 ~~l~~~l~~~ 587 (643)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 268
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=7e-19 Score=166.18 Aligned_cols=155 Identities=15% Similarity=0.215 Sum_probs=111.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCCc------ccceEEEE--EEc---CCCcEEEEEEecCCchhhh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS-------ENYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGVK 486 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~-------~~~~~t~------~~~~~~~~--v~~---~g~~~~~~i~d~~g~~~~~ 486 (643)
+|+++|.+|||||||+++|++.... ..+.++. +..+.... +.. ++....+.+|||+|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999974311 1121221 11222211 111 4456677899999998887
Q ss_pred hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-
Q 006490 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 565 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~- 565 (643)
.. +..+++.+|++++|+|++++.+++....|.... .. ++|+++|+||+|+.... ..+..+++++.+++.
T Consensus 82 ~~--~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YE--VSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDP 151 (179)
T ss_pred HH--HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCc
Confidence 76 677899999999999999987766655554322 22 78999999999986532 233445677777764
Q ss_pred -CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 566 -PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 566 -~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+++++||++| |++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 4899999999 99999999988753
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=8e-19 Score=174.48 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=120.2
Q ss_pred ccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-------------CcEEEEEEecCCch
Q 006490 417 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEE 483 (643)
Q Consensus 417 ~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-------------~~~~~~i~d~~g~~ 483 (643)
+......+||+|+|..|||||||+++|+++.+...+.+|++.++....+...+ ....+.+||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 33445669999999999999999999999998888888988877666555432 34567899999999
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCC---------CCCCCcEEEEEeCCCCCCcc---c-
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED---------SGYGVPCLLIASKDDLKPYT---M- 550 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~---------~~~~~pvilv~NK~Dl~~~~---~- 550 (643)
.+..+ +..+++++|++|+|||+++..+|+.+..|+..+...... ...++|++||+||+||..++ .
T Consensus 95 rfrsL--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 95 RYKDC--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred hhhhh--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 99988 788899999999999999999999999999999875320 01158999999999997642 1
Q ss_pred ---cHHHHHHHHHHhCCC
Q 006490 551 ---AVQDSARVTQELGIE 565 (643)
Q Consensus 551 ---~~~~~~~~~~~~~~~ 565 (643)
..+.+++++++.++.
T Consensus 173 s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccHHHHHHHHHHcCCC
Confidence 367899999998865
No 270
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=4.7e-19 Score=167.38 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C-----CCCCCCCC------CCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES--V-----PEKVPPVH------APTR----LPPDF---YPDRVPVTIIDTSSSLENK 73 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~--~-----~~~~~~~~------~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 73 (643)
+|+++|++|||||||+++|++.. + ...+.++. +.+. ....+ ...++.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 59999999999999999999743 1 11111110 1111 11112 4567889999999999998
Q ss_pred hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cce
Q 006490 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IET 152 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (643)
..+..+++.+|++|+|||+++..+.+... .|... ... ++|+++|+||+|+.... .......+.+.++. ...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~-~~~--~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLA-LEN--NLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHH-HHc--CCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence 88899999999999999999877666654 24332 223 78999999999986432 22223445554442 124
Q ss_pred EEEeCcccCCChhHHHHHHHHHHh
Q 006490 153 CVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++++||++|.|++++++++.+.+.
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhCC
Confidence 899999999999999999987653
No 271
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.81 E-value=5.7e-19 Score=170.52 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=110.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE 493 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~ 493 (643)
.+..++|+|+|++|||||||+|++++..+.....+.++.......+..+ +...+.+||++|.... ..+.....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 3556899999999999999999999987543333322222333444555 3346788999996211 11111234
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 573 (643)
.+..+|++++|+|++++.++.....|...+..... . ++|+++|+||+|+....... ......+. +++++||+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~-~--~~~viiV~NK~Dl~~~~~~~----~~~~~~~~-~~~~~Sa~ 188 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA-E--DIPMILVLNKIDLLDDEELE----ERLEAGRP-DAVFISAK 188 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc-C--CCCEEEEEEccccCChHHHH----HHhhcCCC-ceEEEEcC
Confidence 46789999999999998887777666666654432 1 68999999999997643221 23333333 58999999
Q ss_pred cC-CHHHHHHHHHHH
Q 006490 574 SK-DLNNVFSRIIWA 587 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~ 587 (643)
+| |+++++++|.+.
T Consensus 189 ~~~gi~~l~~~L~~~ 203 (204)
T cd01878 189 TGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCHHHHHHHHHhh
Confidence 99 999999998764
No 272
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.81 E-value=9.6e-19 Score=185.86 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=132.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK 492 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~ 492 (643)
.+..+||+|+|+||||||||+|+|++..+..++. |+++.+.....+.++| ..+.+|||+|...... +.++.
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3567899999999999999999999987665544 4444445555566653 4457899999744322 12245
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
.+++.||++++|+|++++.+++.. |+..+... +.|+++|+||+|+... ....+++.++.+ ++++||
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~vSa 343 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSNLSA 343 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCc-eEEEEE
Confidence 788999999999999998876654 66555432 7899999999999653 223455666665 899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CC-CcccccchhhhhhhhchhhHHHHHH
Q 006490 573 KSKDLNNVFSRIIWAAEHPHLN-IP-ETETGRNRKRYRHLVNSSLVFVSVG 621 (643)
Q Consensus 573 ~~g~i~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~g 621 (643)
+++|++++++.+.+.+...... .. .........|+.+++.++..++.-+
T Consensus 344 k~~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~ 394 (442)
T TIGR00450 344 KQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQF 394 (442)
T ss_pred ecCCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHH
Confidence 9889999999988876533211 11 1112335678888888888877644
No 273
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=6.9e-19 Score=164.70 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCc-eeEEEEeCCCCCc----chhhhHH---hhccCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKRAD 84 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~ad 84 (643)
+|+|+|++|||||||+|+|.+.... ...+++.... ....+...+ ..+.+|||||+.+ ....... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP-NLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCC-cceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5999999999999999999976532 2223221111 111223334 4899999999742 1122233 345699
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 85 AVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 85 ~il~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
++++|+|++++ .+++.+. .|.+.+.... .++|+++|+||+|+...... .+....+..+.. ..+++++||++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEecCC
Confidence 99999999999 7888876 5888887653 36899999999998654332 222333333321 23689999999
Q ss_pred CCChhHHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKA 174 (643)
Q Consensus 161 ~~gi~~l~~~i~~~ 174 (643)
+.|++++++++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988754
No 274
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=6.7e-19 Score=179.34 Aligned_cols=152 Identities=19% Similarity=0.284 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-----hhh--hhccHHh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-----VKK--ILSNKEA 494 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-----~~~--~~~~~~~ 494 (643)
..|+|+|+||||||||+|||+++..+++++ | +|++.. .....+. + ..+.++||+|-+. +.. ..++..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-y~~~~~~-~-~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-YGDAEWL-G-REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc-cceeEEc-C-ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 479999999999999999999999999888 5 555543 3334444 2 3377899998542 222 1336788
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
+..||++|||+|+..+.+ .........++.. ++|+++|+||+|-.. .+....-...+|+..++++||.+
T Consensus 81 i~eADvilfvVD~~~Git-~~D~~ia~~Lr~~------~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 81 IEEADVILFVVDGREGIT-PADEEIAKILRRS------KKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HHhCCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhh
Confidence 899999999999998765 3344444444432 799999999999764 22333345667888899999999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |+.+|++.+.+.+.
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9 99999999999874
No 275
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=4.7e-19 Score=164.68 Aligned_cols=157 Identities=17% Similarity=0.055 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES---VPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
+.|+++|++|||||||+|+|++.. +.....+..+.......+... +..+.+|||||++.+......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 369999999999999999999743 221111111111111112222 6789999999998877666778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCChhHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDV 167 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l 167 (643)
|+|+++....+.. ..+..++... .+|+++|+||+|+..........+.........+ ...+++++||++|.|++++
T Consensus 81 V~d~~~~~~~~~~--~~~~~~~~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 81 VVAADEGIMPQTR--EHLEILELLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEECCCCccHhHH--HHHHHHHHhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 9998763211111 1222333331 3499999999999753211001111222222210 1247999999999999999
Q ss_pred HHHHH
Q 006490 168 FYYAQ 172 (643)
Q Consensus 168 ~~~i~ 172 (643)
++.+.
T Consensus 158 ~~~l~ 162 (164)
T cd04171 158 KEYLD 162 (164)
T ss_pred HHHHh
Confidence 98765
No 276
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=2.1e-18 Score=175.95 Aligned_cols=182 Identities=17% Similarity=0.246 Sum_probs=125.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEAL 495 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~ 495 (643)
-.|+|+|+||||||||+|+|++.+...++. + |++. ....+... +...+.++||+|...... + ......+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~--~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH--RIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc--cEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 469999999999999999999998877765 3 3333 22223233 336788899999533211 1 1145577
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
..+|++++|+|++++.+ ......+..+... +.|+++|+||+|+... .......+.+.+..++.+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 89999999999998433 2223333333322 6899999999999843 34455666777767777799999999
Q ss_pred C-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490 575 K-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL 615 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~ 615 (643)
+ |++++++.+.+.+. ++..++++..+..+.+ ...+.+++.+
T Consensus 156 ~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~ 199 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKL 199 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9 99999999999874 4555666666665544 4455545443
No 277
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=2.3e-17 Score=187.00 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=107.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh--hhccHHhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK--ILSNKEAL 495 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~--~~~~~~~~ 495 (643)
..+|+|+|+||||||||+|+|++.....+.. |+++.+......... ...+.+|||+|.+. +.. ...+..++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987655544 433333333333333 34677899999652 111 12245678
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
..||++|+|+|++++.+ .....|...+... ++|+++|+||+|+.... ....+ ...+++..+++|||++|
T Consensus 353 ~~aD~iL~VvDa~~~~~-~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~~~---~~~~~-~~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT-STDERIVRMLRRA------GKPVVLAVNKIDDQASE---YDAAE-FWKLGLGEPYPISAMHG 421 (712)
T ss_pred HhCCEEEEEEECCCCCC-HHHHHHHHHHHhc------CCCEEEEEECcccccch---hhHHH-HHHcCCCCeEEEECCCC
Confidence 99999999999987643 2223455555443 89999999999986532 11122 22356655789999999
Q ss_pred -CHHHHHHHHHHHHhC
Q 006490 576 -DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~ 590 (643)
|+++++++|++.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 999999999988743
No 278
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.80 E-value=1.9e-18 Score=162.17 Aligned_cols=152 Identities=24% Similarity=0.355 Sum_probs=114.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..++|+|+|++|||||||++++.+..+.. +.||.+ +....+...| ..+.+||++|+..+... +..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~--~~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPY--WRNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHH--HHHHhcCCCEE
Confidence 46899999999999999999999986643 334544 3334455542 56778999998877665 56778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~ 574 (643)
++|+|+++..++.....++..+....... ++|+++++||+|+.... ..+++.+.+++. +++++||++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 99999999888887777776665433222 79999999999986532 233444555543 367999999
Q ss_pred C-CHHHHHHHHHH
Q 006490 575 K-DLNNVFSRIIW 586 (643)
Q Consensus 575 g-~i~~l~~~l~~ 586 (643)
| |++++|++|++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9 99999999875
No 279
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.80 E-value=1.1e-18 Score=163.95 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=111.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+.++|+|+|++|||||||++++.+..+....++ .+.... .+...+..+.+|||||...+...+..+++.+|++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~~~--~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPT-QGFNIK--TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcceE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 34579999999999999999999998765332222 222111 233346889999999988877778888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc------cceEEEeCcccC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM 161 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 161 (643)
|+|+++..++......+...+... ..++|+++++||+|+...... +.+.+.++- ..+++++||++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 999999888877765343433321 247999999999998653221 122222221 114789999999
Q ss_pred CChhHHHHHHHH
Q 006490 162 IQVPDVFYYAQK 173 (643)
Q Consensus 162 ~gi~~l~~~i~~ 173 (643)
.|++++|+++.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 280
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=1.1e-18 Score=186.69 Aligned_cols=196 Identities=20% Similarity=0.216 Sum_probs=130.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 78 (643)
.+..++|+|+|+||||||||+|+|++... +.+.++++... ....+..++.++.+|||||+.++... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV-IEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc-EEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 45678999999999999999999999763 45555533222 22334456788999999998765432 224
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
+++.+|++++|+|++++.+.+... .|.. ..++|+++|+||+|+...... . ... ..+++++||
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~--~~~~i~iSA 352 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEIDL-E---------EEN--GKPVIRISA 352 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccchh-h---------hcc--CCceEEEEe
Confidence 688999999999999988777543 2332 347899999999999754222 1 111 136899999
Q ss_pred ccCCChhHHHHHHHHHHhCCC-----CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhh
Q 006490 159 TTMIQVPDVFYYAQKAVLHPT-----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV 223 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~ 223 (643)
++|.|++++++++.+.+.... .......++ .....+.++|.+............+..++++....
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~ 423 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALE 423 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999999998774311 111122222 24455666666554443333344555666655443
No 281
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=2.6e-18 Score=160.51 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h-hccHHhh-cc
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEAL-AS 497 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~-~~~~~~~-~~ 497 (643)
+|+++|++|||||||+|+|.+..+.....+.++.......+.. ....+.+|||+|...... + ......+ ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999998765332232222233333333 246788899999732100 0 0011111 34
Q ss_pred CCEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 498 CDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~--~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
+|++++|+|+++..++ +....|+..+..... +.|+++|+||+|+.......+ ...+.+..+. ++++|||++|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~~ 153 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK----NKPVIVVLNKIDLLTFEDLSE-IEEEEELEGE-EVLKISTLTE 153 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcC----cCCeEEEEEccccCchhhHHH-HHHhhhhccC-ceEEEEeccc
Confidence 6899999999987543 555667777765432 789999999999976443322 3444444444 4999999999
Q ss_pred -CHHHHHHHHHHHH
Q 006490 576 -DLNNVFSRIIWAA 588 (643)
Q Consensus 576 -~i~~l~~~l~~~~ 588 (643)
|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 9999999998764
No 282
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1e-18 Score=163.14 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccC---CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.|+|+|++|||||||+|+|+...+.....+..........+.. .+..+.+|||||+..+...+..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999999988865542221111111112222 4678999999999888888888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHH----hhcccceEEEeCcccCCChhH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|+++....+... .+..++.. ++|+++|+||+|+...... ........+.. ..+...+++++||++|.|+.+
T Consensus 82 d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 998754333221 33445544 7899999999998743211 11122222211 122224689999999999999
Q ss_pred HHHHHHHH
Q 006490 167 VFYYAQKA 174 (643)
Q Consensus 167 l~~~i~~~ 174 (643)
+++++.+.
T Consensus 157 l~~~l~~~ 164 (168)
T cd01887 157 LLEAILLL 164 (168)
T ss_pred HHHHHHHh
Confidence 99998765
No 283
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.5e-18 Score=178.39 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=130.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----h-hccHHhhcc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----I-LSNKEALAS 497 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----~-~~~~~~~~~ 497 (643)
...|+|||.||||||||+|+|++.+......|.|+.....-++... ....+.++|++|...-.. + .+...++..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 3469999999999999999999876433333533333333344444 345678899999632110 1 123457899
Q ss_pred CCEEEEEEeCC---ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-CcEEeeec
Q 006490 498 CDVTIFVYDSS---DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMK 573 (643)
Q Consensus 498 ad~illv~D~s---~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~ 573 (643)
+|++++|+|++ +...++....|..++..+.... .++|+++|+||+|+.......+..+++.+.++.. +++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999998 4455677777777777653211 1689999999999976544455566666666653 58999999
Q ss_pred cC-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhchhh
Q 006490 574 SK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNSSL 615 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~ 615 (643)
++ |++++++.|.+.+. .+..++++..+..+.+ ...+++++.+
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~ 361 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQL 361 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHh
Confidence 99 99999999999874 4555556666555544 5555555554
No 284
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=2.5e-18 Score=159.80 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
.|+++|++|||||||+|+|++..... .+.++++.+.....+..+ ....+.+|||+|++.+... ...++..||++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~--~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKN--MLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHH--HHhhhhcCCEE
Confidence 58999999999999999999754222 222333333333444444 2356788999999877554 56678899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh--CCCCcEEeeeccC-
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL--GIEPPIPVSMKSK- 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~~~~~vSa~~g- 575 (643)
++|+|++++.. .+....+..+... . ..|+++|+||+|+...... .+...+..+.. ...+++++||++|
T Consensus 79 i~V~d~~~~~~-~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 79 LLVVAADEGIM-PQTREHLEILELL-G----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEEECCCCcc-HhHHHHHHHHHHh-C----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 99999987321 1112222222222 1 2499999999999764221 22333333332 1235999999999
Q ss_pred CHHHHHHHHHH
Q 006490 576 DLNNVFSRIIW 586 (643)
Q Consensus 576 ~i~~l~~~l~~ 586 (643)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998754
No 285
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=1.4e-18 Score=184.69 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=130.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 78 (643)
.++.+||+|+|+||||||||+|+|++.. ++.++|+++.. .....+..++..+.+|||||+.++... ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd-~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD-VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE-EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4567999999999999999999999875 45556653322 233445566788999999998754432 235
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
+++.+|++|+|||++++.+.+.. |+..+... ++|+++|+||+|+... . ...+.+.++ .+++++||
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~--~------~~~~~~~~~--~~~~~vSa 343 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN--S------LEFFVSSKV--LNSSNLSA 343 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc--c------hhhhhhhcC--CceEEEEE
Confidence 78999999999999998877653 66665543 7899999999998643 1 122333333 25899999
Q ss_pred ccCCChhHHHHHHHHHHhCCCC--------CCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhh
Q 006490 159 TTMIQVPDVFYYAQKAVLHPTA--------PLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK 224 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~--------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~ 224 (643)
++ .||+++++.+.+.+..... ......++ ....++..+|.+............+..++++.....
T Consensus 344 k~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~ 417 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINC 417 (442)
T ss_pred ec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 98 6999999988886633211 11111111 234445555555444333333345555666554443
No 286
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.3e-18 Score=175.14 Aligned_cols=164 Identities=17% Similarity=0.085 Sum_probs=118.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhh-hccHHhhcc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALAS 497 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~ 497 (643)
...|+|||.||||||||+|+|.+........|.|+.....-.+... ....+.++|++|...- ..+ .+...+++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3579999999999999999999866443333433333444445554 3456788999985311 111 124567789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
||++++|+|+++..+++....|..++..+.... .++|+++|+||+|+...... .+..+.+.+..+.. ++++||+++
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L-~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSAktg~ 314 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL-ADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISAVTGE 314 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc-ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEcCCCC
Confidence 999999999998878898889998887764311 16899999999999764432 22344444555554 999999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|+++++++|.+.+.
T Consensus 315 GI~eL~~~L~~~l~ 328 (335)
T PRK12299 315 GLDELLRALWELLE 328 (335)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 287
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2e-18 Score=176.75 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCccc-CCceeEEEEeCCCCCcch----hhh---HHhhccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKL---NEELKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~---~~~~~~a 83 (643)
..|+|||.||||||||+|+|++... +.++|.++..... ..+. .+..++.+|||||+.+.. .+. -..++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~-G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL-GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE-EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4699999999999999999998653 2334442222112 2222 255679999999985422 122 2456789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
+++|+|+|+++..+++.+. .|..++..+.+ ++|+++|+||+|+...... ..+..+.+....+ .++++|||++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSAkt 312 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISAVT 312 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEcCC
Confidence 9999999999888888887 58888877542 7899999999998754332 1222233333332 3689999999
Q ss_pred CCChhHHHHHHHHHHh
Q 006490 161 MIQVPDVFYYAQKAVL 176 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (643)
+.||+++++++.+.+.
T Consensus 313 g~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 313 GEGLDELLRALWELLE 328 (335)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 288
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=2e-18 Score=184.76 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=127.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK 492 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~ 492 (643)
.+..++|+++|.||||||||+|+|++.++..+.+ +.++.++....+...| ..+.+|||+|...... +.++.
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 3456899999999999999999999988755544 4334445455556653 4577899999754322 22355
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
.+++.||++++|+|++++.+++....|.. .. +.|+++|+||+|+....... ...+. +++++||
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~----~~piiiV~NK~DL~~~~~~~-------~~~~~-~~i~iSA 352 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----LK----DKPVIVVLNKADLTGEIDLE-------EENGK-PVIRISA 352 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh-----cC----CCCcEEEEEhhhccccchhh-------hccCC-ceEEEEe
Confidence 67899999999999999887765433332 11 78999999999997632211 22233 5899999
Q ss_pred ccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHH
Q 006490 573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVG 621 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 621 (643)
++| |+++++++|.+.+...... ..........|+++++.++..++.-.
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~-~~~~~~~~~~R~~~~l~~a~~~l~~~ 401 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGG-NQEGVFLTNARHLEALERALEHLERA 401 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhcccc-ccccceehHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999987542211 11222335568888888887776543
No 289
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=1e-18 Score=163.83 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=120.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+++|.+|+|||||++++..+.+....|+ .+... ..+...++.+.+||.+|...+...++.+++.+|++||
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT-~g~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPT-IGFNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEE-SSEEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcc-ccccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEE
Confidence 37789999999999999999999998765443332 22211 2344578899999999999899999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHH-HHhhc--ccceEEEeCcccCCCh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPI-MQQFR--EIETCVECSATTMIQV 164 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~Sa~~~~gi 164 (643)
|+|.++...+......+...+... ..++|+++++||+|+...... .+....+ ...+. ....++.|||.+|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999998888887665555432 247999999999998764322 1111111 11222 2235899999999999
Q ss_pred hHHHHHHHHHH
Q 006490 165 PDVFYYAQKAV 175 (643)
Q Consensus 165 ~~l~~~i~~~~ 175 (643)
.+.++|+.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 290
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=7.1e-18 Score=172.66 Aligned_cols=164 Identities=16% Similarity=0.084 Sum_probs=118.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh----hh-hccHHhhc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALA 496 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~ 496 (643)
-...|+|+|.||||||||+|+|.+........|.++.....-.+... ....+.++|++|...-. .+ ....+.+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 34579999999999999999999876443333433333444445555 44677889999963211 11 11345677
Q ss_pred cCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490 497 SCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (643)
Q Consensus 497 ~ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 573 (643)
.||++++|+|+++. .+++....|..++..+.... .++|+++|+||+|+.......+..+.+++.++.. ++++||+
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l-~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iSAk 312 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL-AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPISAL 312 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh-ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEEcc
Confidence 89999999999976 67777778887776653211 1689999999999976544455566677777765 9999999
Q ss_pred cC-CHHHHHHHHHHHH
Q 006490 574 SK-DLNNVFSRIIWAA 588 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~ 588 (643)
++ |++++++++.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 99 9999999998754
No 291
>PRK11058 GTPase HflX; Provisional
Probab=99.78 E-value=5.4e-18 Score=179.04 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=111.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHHhhc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKEALA 496 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~~~~ 496 (643)
..+|+|+|.||||||||+|+|++.++.....+.++.+.....+.+++ ...+.+|||+|.... +.+.++...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999999876643444333344455566663 335678999996321 22334566789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
.||++++|+|++++.+++....|...+..... . ++|+++|+||+|+...... ... ....+.+.++++||++|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~-~--~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDA-H--EIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTGA 348 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc-C--CCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCCC
Confidence 99999999999999877766544443333321 1 6899999999999753211 111 11234443588999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|++++++.|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
No 292
>PLN00023 GTP-binding protein; Provisional
Probab=99.77 E-value=3.1e-18 Score=170.27 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=109.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-------------CCceeEEEEeCCCCCcc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------PDRVPVTIIDTSSSLEN 72 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~i~Dt~G~~~~ 72 (643)
.....+||+|+|+.|||||||+++|+++.+...+.++.+... ....+. ...+.+.||||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 355679999999999999999999999988766555444332 112222 23578999999999999
Q ss_pred hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-------------CCCcEEEEEecccCCCCCc--cc--h
Q 006490 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT--S 135 (643)
Q Consensus 73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~D~~~~~~--~~--~ 135 (643)
..++..+++++|++|+|||++++.+++.+. .|++.+.... .++|+|||+||+|+...+. .+ .
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999998 5999997642 2589999999999975432 10 1
Q ss_pred hhhhhhHHHHhhc
Q 006490 136 LEEVMGPIMQQFR 148 (643)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (643)
..+..+.++++.+
T Consensus 176 ~~e~a~~~A~~~g 188 (334)
T PLN00023 176 LVDAARQWVEKQG 188 (334)
T ss_pred cHHHHHHHHHHcC
Confidence 3456677777765
No 293
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.77 E-value=3.8e-18 Score=176.24 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCcccCCceeEEEEeCCCCCc--chhhhH------Hhh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLE--NKGKLN------EEL 80 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~------~~~ 80 (643)
..++|+|+|.||||||||+|+|++..+ +.+.++++ ..+.....+ .++..+.+|||+|+.. .....+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 448999999999999999999999873 33443322 222222222 2456899999999832 111111 357
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
.+||++|+|+|++++.+.+.+. .|...++... .++|+++|+||+|+...... ..+... ..+++++||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence 8999999999999998877765 3666666543 37899999999998643211 111111 1258999999
Q ss_pred cCCChhHHHHHHHHH
Q 006490 160 TMIQVPDVFYYAQKA 174 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (643)
+|.|++++++.+.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999987653
No 294
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=1.1e-17 Score=156.91 Aligned_cols=158 Identities=24% Similarity=0.293 Sum_probs=120.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|.+||||||+++++..++... ..||.+ +.+..+... ...+.+||.+|+..+..+ +..++..+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~--w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPL--WKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGG--GGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEecccccccccc--ceeeccccce
Confidence 567899999999999999999999875443 335554 444555554 466788999999888887 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH--hC--CC-CcEEeeeccC
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE--LG--IE-PPIPVSMKSK 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~--~~--~~-~~~~vSa~~g 575 (643)
+|+|+|+++...+.+....+..+....... ++|+++++||.|+..... .+++...... +. .. .++.|||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~--~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELK--DIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGT--TSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcc--cceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 999999999988888888888877654433 799999999999876322 2222222211 11 11 3789999999
Q ss_pred -CHHHHHHHHHHHH
Q 006490 576 -DLNNVFSRIIWAA 588 (643)
Q Consensus 576 -~i~~l~~~l~~~~ 588 (643)
|+.+.++||.+++
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 9999999998864
No 295
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=1.8e-18 Score=156.72 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-----cchhhhHHhhccCCEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL 88 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~il~ 88 (643)
||+++|++|||||||+|+|++..+. +.++ ....+. -.+|||||.. .+.... ..++++|++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t-----~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKT-----QAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccc-----eeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 8999999999999999999988652 2221 111121 1689999973 122222 35789999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
|||++++.++... .|...+ ..|+++|+||+|+.+.. . ..+....+.+..+. .+++++||++|.|++++|
T Consensus 69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-V--DIERAKELLETAGA-EPIFEISSVDEQGLEALV 137 (142)
T ss_pred EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-c--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence 9999999887652 354432 35999999999986422 1 22333455555442 368999999999999999
Q ss_pred HHHH
Q 006490 169 YYAQ 172 (643)
Q Consensus 169 ~~i~ 172 (643)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8763
No 296
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=8.8e-18 Score=154.60 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=114.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCc--eeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR--VPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+++|.+|+|||||+|++++..+.....++.+.......+..++ +.+.+|||||+..+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999885444332222222222233334 7899999999988888888889999999999
Q ss_pred EECCCc-ccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
+|.... .++......|...+..... +.|+++|+||+|+.... ...........++. .+++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~-~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNG-EPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccC-CceEEeecCCCCCHHHH
Confidence 998877 6666665456666655444 88999999999997543 12223333444443 36999999999999999
Q ss_pred HHHH
Q 006490 168 FYYA 171 (643)
Q Consensus 168 ~~~i 171 (643)
++++
T Consensus 156 ~~~l 159 (161)
T TIGR00231 156 FKIV 159 (161)
T ss_pred HHHh
Confidence 9875
No 297
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.77 E-value=1.7e-17 Score=143.77 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=124.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
++.++|.|+|..|+||||++++|.+..... ..||.+ +.++.+..+ ...+.+||..|+..+.+. +..|+..+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~-i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~--W~nYfestdg 86 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT-ISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSY--WKNYFESTDG 86 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc-cCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHH--HHHhhhccCe
Confidence 448999999999999999999999987322 224443 556666554 467788999999999888 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-----HHHHHHHHHHhCCCCcEEeeeccC
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-----VQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
+|+|+|.+|+..+++....+.++.....-. +.|+++++||.|+...-.. .-..+++++...++ ++-|||.+|
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tg 163 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTG 163 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEecccc
Confidence 999999999999988887777765433223 8999999999999842111 22344555555665 899999999
Q ss_pred -CHHHHHHHHHHHHhC
Q 006490 576 -DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~ 590 (643)
++.+-+++|+..+..
T Consensus 164 e~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 999999999987753
No 298
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=1.3e-17 Score=153.99 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=108.2
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhh----ccHHhh--ccCCEE
Q 006490 428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL--ASCDVT 501 (643)
Q Consensus 428 ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~--~~ad~i 501 (643)
|+|.+|||||||+|++.+........++++.+.....+.++| ..+.+|||+|.+.+.... -...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999874443435444444455566663 467889999986554310 023344 499999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|+|++++.. ...+...+... ++|+++|+||+|+............+.+.++.+ ++++||++| |++++
T Consensus 79 i~v~d~~~~~~---~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~~l 148 (158)
T cd01879 79 VNVVDATNLER---NLYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEGIDEL 148 (158)
T ss_pred EEEeeCCcchh---HHHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence 99999998644 23344444443 799999999999976544444456777777875 999999999 99999
Q ss_pred HHHHHHHH
Q 006490 581 FSRIIWAA 588 (643)
Q Consensus 581 ~~~l~~~~ 588 (643)
++.+.+..
T Consensus 149 ~~~l~~~~ 156 (158)
T cd01879 149 KDAIAELA 156 (158)
T ss_pred HHHHHHHh
Confidence 99998764
No 299
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.76 E-value=8.2e-18 Score=164.42 Aligned_cols=166 Identities=25% Similarity=0.403 Sum_probs=126.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+++|++|||||||+++|.++.+...++++.+......... ...+.+.+|||+|++++...++.++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 348999999999999999999999998877665433322221222 226789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHh--hcccceEEE
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQ--FREIETCVE 155 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~ 155 (643)
|+|.++..+..+....|.+.++..+ .+.|+++|+||+|+....... ............ .... .+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeE
Confidence 9999998888888888999998876 379999999999998764210 011111111111 1122 3899
Q ss_pred eCcc--cCCChhHHHHHHHHHHhC
Q 006490 156 CSAT--TMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 156 ~Sa~--~~~gi~~l~~~i~~~~~~ 177 (643)
+|++ .+.+|.++|..+.+.+..
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999999888754
No 300
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=6e-18 Score=163.35 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcch--hh------hHHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~ 79 (643)
...++|+|+|++|||||||+|++++..+. .+.+. +.........+ .+...+.+|||||+.... .. ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999998732 22221 11111111222 223489999999974211 11 1123
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
+..+|++++|+|++++.+..... .|.+.++..+ .++|+++|+||+|+...... . ...... ..+++++||
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-~------~~~~~~--~~~~~~~Sa 187 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL-E------ERLEAG--RPDAVFISA 187 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH-H------HHhhcC--CCceEEEEc
Confidence 67899999999999988887765 4777776653 36899999999998754322 1 112222 246899999
Q ss_pred ccCCChhHHHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQKA 174 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (643)
++|.|++++++++.+.
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988764
No 301
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=1.5e-17 Score=169.64 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=114.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK 81 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 81 (643)
.-.|+|+|+||||||||+|+|++..+... .+.++ ..........++..+.+|||||+..... ....++.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt-~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcc-cccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 34699999999999999999999885433 22211 1112223334557899999999865332 2235678
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|++++|+|+++..+.. ...+.+.+... +.|+++|+||+|+..... ......+.+...++ ...++++||+++
T Consensus 84 ~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~--~l~~~~~~l~~~~~-~~~i~~iSA~~~ 156 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKE--ELLPLLEELSELMD-FAEIVPISALKG 156 (292)
T ss_pred cCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHH--HHHHHHHHHHhhCC-CCeEEEecCCCC
Confidence 999999999998843322 22355555543 789999999999974322 13334455554444 357899999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCCcccccc
Q 006490 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQT 189 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~ 189 (643)
.|++++++.+.+.+.. .+++|+.+...
T Consensus 157 ~gv~~L~~~L~~~l~~-~~~~y~~~~~t 183 (292)
T PRK00089 157 DNVDELLDVIAKYLPE-GPPYYPEDQIT 183 (292)
T ss_pred CCHHHHHHHHHHhCCC-CCCCCCCCCCC
Confidence 9999999999887654 33455554433
No 302
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=8.4e-18 Score=160.15 Aligned_cols=159 Identities=19% Similarity=0.124 Sum_probs=111.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--------------Cee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--------------PTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
+|+|+|.+|+|||||+|+|++.......+.... .+. ....+...+..+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998876543322110 010 1112233467899999999988878888
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc---------
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--------- 148 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--------- 148 (643)
.+++.+|++++|+|+....+.... .++..+... ++|+++|+||+|+..........+.+.+..+..+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 899999999999998876654433 355555553 8999999999999763221011222233333322
Q ss_pred ---ccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 149 ---EIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 149 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
...+++++||++|.|++++++++.+.+.
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2357899999999999999999988753
No 303
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=2.5e-17 Score=153.76 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
.|+|+|.+|||||||+|+|.+.++...+.++++.+.....+... +....+.+|||+|++.+..+ +...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--RARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH--HHHHHhhcCEEEE
Confidence 48999999999999999999988776554433333333344443 13457788999999887776 5667899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH----hC-CCCcEEeeeccC-
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE----LG-IEPPIPVSMKSK- 575 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~----~~-~~~~~~vSa~~g- 575 (643)
|+|++++...+ ....+..+... ++|+++|+||+|+..... .......+... .+ ..+++++||++|
T Consensus 80 v~d~~~~~~~~-~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 80 VVAADDGVMPQ-TIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred EEECCCCccHH-HHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99999854322 22223333332 799999999999875321 11122222111 11 125899999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988754
No 304
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=2.1e-17 Score=157.74 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=128.0
Q ss_pred cccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh---------h-
Q 006490 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK---------K- 487 (643)
Q Consensus 418 ~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~---------~- 487 (643)
....+.++|+|+|.||||||||.|.++|.+...++..+.+++..+.-+-+. +...+.++||+|--.-. +
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 445667999999999999999999999999999998644444444445455 56778889999931111 1
Q ss_pred hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------------HHH
Q 006490 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQD 554 (643)
Q Consensus 488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------------~~~ 554 (643)
+.....++..||++++|+|++++...- -...+..+..+. .+|-++|.||+|....+.. ...
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 123567789999999999999642211 123344444443 7899999999998764322 111
Q ss_pred HHHHHHHhCC----------------CCcEEeeeccC-CHHHHHHHHHHHHh-CCCCCCCCcccccchh-hhhhhhch
Q 006490 555 SARVTQELGI----------------EPPIPVSMKSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRK-RYRHLVNS 613 (643)
Q Consensus 555 ~~~~~~~~~~----------------~~~~~vSa~~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~ 613 (643)
..++.++.-. ..+|.+||++| |++++-++|..++. +|+.+..+..+..+++ -+.+.+++
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VRe 297 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVRE 297 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHH
Confidence 2223333222 23899999999 99999999999874 5666666666665555 33343433
No 305
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=2.2e-17 Score=172.48 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccC-CceeEEEEeCCCCCcchh-------hhHHhhccCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKG-------KLNEELKRAD 84 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad 84 (643)
.|+|||.||||||||+|+|++.+. +.++|.++... ....+.. +...+.++||||+.+... ..-..++++|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p-~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVP-NLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCc-EEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998763 33344432222 2222332 345699999999864221 1224688999
Q ss_pred EEEEEEECC---CcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 85 AVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 85 ~il~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
++++|+|++ .....+.+. .|.+++..+. .++|+++|+||+|+..... ..+.+..+.+.++...+++++||
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---l~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---AEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---HHHHHHHHHHHhCCCCCEEEEEC
Confidence 999999988 445566655 5778777653 3689999999999864322 22334445444432225899999
Q ss_pred ccCCChhHHHHHHHHHHhCCCCCCCcccccc
Q 006490 159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~ 189 (643)
+++.|++++++.+.+.+.. .+++|+.+...
T Consensus 316 ~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~t 345 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEE-NPREEAEEAEA 345 (390)
T ss_pred CCCcCHHHHHHHHHHHhhh-CcccCCccccc
Confidence 9999999999999987654 34555544443
No 306
>PTZ00099 rab6; Provisional
Probab=99.76 E-value=3.2e-17 Score=153.36 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=117.1
Q ss_pred CCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHH
Q 006490 446 RPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 525 (643)
Q Consensus 446 ~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~ 525 (643)
+.|...+.||++.++....+.+.|...++.+|||+|++.+..+ +..++++||++|+|||++++.+|+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3566677789988887777888877888999999999998887 77889999999999999999999999999998876
Q ss_pred hcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490 526 LGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 526 ~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
... . +.|+++|+||+|+...+. ..++...+++.+++. +++|||++| |++++|++|++.+..
T Consensus 81 ~~~-~--~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 81 ERG-K--DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred hcC-C--CCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 542 2 689999999999975333 355667778888876 899999999 999999999998754
No 307
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=1.4e-17 Score=153.78 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=102.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHhhc--cCCEEE
Q 006490 17 VVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADAVV 87 (643)
Q Consensus 17 lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~il 87 (643)
|+|++|||||||+|++++..+.. ..+++.... ....+...+..+.+|||||+..+.. ....++. .+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEK-KEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCccccc-ceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 58999999999999999886332 233322221 1223334457899999999876543 2445554 999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
+|+|+++..... .|...+... ++|+++|+||+|+...... . .....+...++ .+++++||.+|.|+.++
T Consensus 80 ~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 80 NVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI-K--IDLDKLSELLG--VPVVPTSARKGEGIDEL 148 (158)
T ss_pred EEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc-h--hhHHHHHHhhC--CCeEEEEccCCCCHHHH
Confidence 999998754422 355555555 7999999999999765433 1 22345555555 36999999999999999
Q ss_pred HHHHHHH
Q 006490 168 FYYAQKA 174 (643)
Q Consensus 168 ~~~i~~~ 174 (643)
++.+.+.
T Consensus 149 ~~~l~~~ 155 (158)
T cd01879 149 KDAIAEL 155 (158)
T ss_pred HHHHHHH
Confidence 9988765
No 308
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.8e-17 Score=179.43 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=109.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hh-hccHHh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KI-LSNKEA 494 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~-~~~~~~ 494 (643)
...+|+|+|+||||||||+|+|++.....+.. |+++.+.....+...| ..+.+|||+|.+... .+ ..+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34689999999999999999999987655444 4433333344445543 357789999965211 11 114567
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
++.||++|+|+|++++.++. ...+...+... ++|+++|+||+|+.... .+. .+ ...+++..+++|||++
T Consensus 115 ~~~aD~il~VvD~~~~~s~~-~~~i~~~l~~~------~~piilV~NK~Dl~~~~--~~~-~~-~~~~g~~~~~~iSA~~ 183 (472)
T PRK03003 115 MRTADAVLFVVDATVGATAT-DEAVARVLRRS------GKPVILAANKVDDERGE--ADA-AA-LWSLGLGEPHPVSALH 183 (472)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECccCCccc--hhh-HH-HHhcCCCCeEEEEcCC
Confidence 89999999999999986644 24444444433 79999999999986432 111 12 2245665568999999
Q ss_pred C-CHHHHHHHHHHHHhC
Q 006490 575 K-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~~ 590 (643)
| |++++|+.+.+.+..
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 9 999999999987743
No 309
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=2e-17 Score=158.18 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--C----------CCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490 14 RVVVVGDRGTGKSSLIAAAAT--ESVPEKVP--P----------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~--~~~~~~~~--~----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
+|+++|++|||||||+++|+. ..+..... . ..+.+. ....+..+++.+.+|||||++++...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 699999999999999999997 44433321 0 011111 2223455678999999999999988899
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc----c-cce
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----E-IET 152 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----~-~~~ 152 (643)
.+++.+|++++|||+++... .... .++..+... ++|+++|+||+|+...... ...+.+..+...++ . -.+
T Consensus 84 ~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999987432 2222 344554444 7899999999999654321 12222333332221 0 136
Q ss_pred EEEeCcccCCChhHH
Q 006490 153 CVECSATTMIQVPDV 167 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l 167 (643)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 899999999888554
No 310
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=4.2e-17 Score=150.07 Aligned_cols=156 Identities=24% Similarity=0.379 Sum_probs=118.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|.+|+|||||+|++.+..+...+.++++.++....+...+....+.+||++|+..+..+ .....+.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI--RRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhhhEEEE
Confidence 69999999999999999999999866666567766666655666543366788999998877776 5667788999999
Q ss_pred EEeCCCh-hhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 504 VYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 504 v~D~s~~-~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|.... .++.... .+...+...... +.|+++|+||+|+.... ............+..+++++||++| |+.++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence 9999876 6666555 566666555432 68999999999997644 2333444445555556999999999 99999
Q ss_pred HHHHH
Q 006490 581 FSRII 585 (643)
Q Consensus 581 ~~~l~ 585 (643)
++.|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 311
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=3.5e-17 Score=153.33 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=108.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-----------hhHH
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-----------KLNE 78 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 78 (643)
.++|+++|++|+|||||+|+|++..+. ...+++.... ....+..++..+.+|||||..+... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 578999999999999999999987632 2233322111 2223344566789999999754311 1124
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEEe
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVEC 156 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 156 (643)
+++.+|++++|+|++++.+.... .+...+... ++|+++|+||+|+...... ..+.....+.+.++. ..+++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEEE
Confidence 56789999999999988776554 245555544 7899999999998765322 233333444444432 2469999
Q ss_pred CcccCCChhHHHHHHHHH
Q 006490 157 SATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~ 174 (643)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999987653
No 312
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=2.2e-17 Score=169.12 Aligned_cols=156 Identities=20% Similarity=0.235 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccC-CceeEEEEeCCCCCcch----hhhH---HhhccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENK----GKLN---EELKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~----~~~~---~~~~~a 83 (643)
..|+|||.||||||||+|+|++... +.++|.++...... .+.. +...+.+|||||+.+.. .+.. ..++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5799999999999999999998763 23344332221221 2222 34789999999986422 2223 345679
Q ss_pred CEEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 84 d~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|++|+|+|+++. .+++.+. .|.+++..+. .++|+++|+||+|+.... ...+..+.+.+.++ .+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~--~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG--KPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC--CcEEEEE
Confidence 999999999976 5677766 4887776653 378999999999987542 12334445555554 3689999
Q ss_pred cccCCChhHHHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~ 175 (643)
|+++.|++++++++.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999987653
No 313
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=8.8e-18 Score=161.83 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCC-----------cchhhhH
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----------ENKGKLN 77 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 77 (643)
...++|+++|++|||||||+|+|++..+... .++ .+.....+... .+.+|||||.. .+...+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~---~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG---VTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc---eeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3568999999999999999999998875433 333 22222222222 58999999952 2333333
Q ss_pred Hhh----ccCCEEEEEEECCCcccHH---------HHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH
Q 006490 78 EEL----KRADAVVLTYACNQQSTLS---------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144 (643)
Q Consensus 78 ~~~----~~ad~il~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~ 144 (643)
.++ ..++++++|+|.+...... .....+...+... ++|+++|+||+|+.... .+....+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHHHH
Confidence 343 3467889999876532210 0111234444444 79999999999986532 22344555
Q ss_pred Hhhccc-------ceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 145 QQFREI-------ETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 145 ~~~~~~-------~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+.++.. .+++++||++| |++++++++.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 555420 14799999999 99999999988754
No 314
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.7e-17 Score=152.83 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhccCCE
Q 006490 16 VVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRADA 85 (643)
Q Consensus 16 ~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~ 85 (643)
+++|.+|||||||+|+|++.. +....+++... .........+..+.+|||||+..+.. .....++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999876 33334332211 12223344567899999999887543 33467889999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
+++|+|+.+..+.... .+.+.++.. +.|+++|+||+|+...... ......++ ..+++++||++|.|++
T Consensus 80 ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~-~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 80 ILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLG-FGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcC-CCCeEEEecccCCCHH
Confidence 9999998776544442 355566655 6999999999999754211 11222333 2368999999999999
Q ss_pred HHHHHHHHH
Q 006490 166 DVFYYAQKA 174 (643)
Q Consensus 166 ~l~~~i~~~ 174 (643)
++++++.+.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999998764
No 315
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=1.7e-17 Score=152.79 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----hhHHhhccCCEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----KLNEELKRADAVVLT 89 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~ad~il~v 89 (643)
+|+++|++|||||||+|+|.+..... .. +....+... .+|||||+..... .....++++|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~-----~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RK-----TQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--cc-----ceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 69999999999999999988654211 11 111122222 2699999743222 222457899999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
+|+++..++.. .|+..+ ..++|+++++||+|+... . .+....+.++.+...+++++||++|.|++++|+
T Consensus 72 ~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~----~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 72 HGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA----D-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc----c-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99998876533 233332 337899999999998542 1 233445555665434799999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
.+.+.+.
T Consensus 141 ~l~~~~~ 147 (158)
T PRK15467 141 YLASLTK 147 (158)
T ss_pred HHHHhch
Confidence 8877653
No 316
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=6.6e-17 Score=171.33 Aligned_cols=168 Identities=18% Similarity=0.110 Sum_probs=113.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALA 496 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~ 496 (643)
....|+|||.||||||||+|+|++....+...|.++.....-.++.. ...+.++|++|... ...+ .....++.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34689999999999999999999876554333533333444455554 25678899999421 1111 11355678
Q ss_pred cCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCC--------CCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC
Q 006490 497 SCDVTIFVYDSSDE----YSWKRTKELLVEVARLGED--------SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564 (643)
Q Consensus 497 ~ad~illv~D~s~~----~s~~~~~~~~~~i~~~~~~--------~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 564 (643)
.||++|+|+|+++. +.++....+..++..+... ...++|+|+|+||+|+.+.....+.........++
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~ 315 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW 315 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence 99999999999852 3444555555555544320 01168999999999997643333333333344566
Q ss_pred CCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 565 EPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 565 ~~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
. +++|||+++ |+++++.+|.+.+....
T Consensus 316 ~-Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 P-VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred e-EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 5 999999999 99999999999875443
No 317
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=8.7e-17 Score=153.12 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcc--------------cceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--------------EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~--------------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~ 490 (643)
+|+|+|.+|+|||||+|+|++........++.. ................+.+||++|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-- 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE-- 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH--
Confidence 489999999999999999999877654422110 1111111222223457788999998776665
Q ss_pred cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC----
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG---- 563 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~---- 563 (643)
+..++..+|++++|+|++++.+.. ...++..+... +.|+++|+||+|+...... .+...+..+..+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 677889999999999999876533 33444444432 7999999999999863322 223333333322
Q ss_pred ---------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 564 ---------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 564 ---------~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
..+++++||++| |++++++++.+.+.
T Consensus 152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 236899999999 99999999998763
No 318
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=6.3e-17 Score=148.98 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=104.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHhhc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELK 81 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 81 (643)
.++|+++|++|+|||||+|++++..+. ...+++.... ....+...+.++.+|||||..++... ....+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 368999999999999999999988742 3333322221 22234455778999999998754322 225678
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|++++|+|++++.+...... +.. ..++|+++|+||+|+...... .... ...+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~~~--~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LSLL--AGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cccc--CCCceEEEECCCC
Confidence 9999999999998887776542 222 347999999999998753221 1111 1246999999999
Q ss_pred CChhHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKA 174 (643)
Q Consensus 162 ~gi~~l~~~i~~~ 174 (643)
.|++++++++...
T Consensus 143 ~~v~~l~~~l~~~ 155 (157)
T cd04164 143 EGLDELKEALLEL 155 (157)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988764
No 319
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=5e-17 Score=149.70 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=102.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCC--CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----hh-ccHHhhccC
Q 006490 427 LLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----IL-SNKEALASC 498 (643)
Q Consensus 427 ~ivG~~nvGKSSLln~l~~~~~~~--~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~~-~~~~~~~~a 498 (643)
+++|.+|||||||+|+|++..... .+.+++.. ......... ...+.+|||+|...... +. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 589999999999999999876332 22233333 333334443 35678899999766432 11 134567899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
|++++|+|++++.+... ..+...+... +.|+++|+||+|+...... ......+++.+++++||++| |+
T Consensus 78 d~ii~v~d~~~~~~~~~-~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 78 DVILFVVDGREGLTPAD-EEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred CEEEEEEeccccCCccH-HHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCH
Confidence 99999999988655333 2233333333 7999999999999774322 23344567656899999999 99
Q ss_pred HHHHHHHHHH
Q 006490 578 NNVFSRIIWA 587 (643)
Q Consensus 578 ~~l~~~l~~~ 587 (643)
+++++++.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 320
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=4.5e-17 Score=149.89 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch-----hhhhhhccHHhhccCC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD 499 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ad 499 (643)
+|+++|++|||||||+|+|.+.... ..+|.. +...+. .+||++|.. .+.. ....++.||
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~---~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHA---LITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHH---HHHHHhcCC
Confidence 7999999999999999998876421 111211 122211 158999962 2222 234578999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-CcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~g-~i 577 (643)
++++|+|++++.++. ..|+..+. . ++|+++++||+|+... ..+...++.+..++. |++++||++| |+
T Consensus 67 ~il~v~d~~~~~s~~--~~~~~~~~---~----~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 67 MLIYVHGANDPESRL--PAGLLDIG---V----SKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred EEEEEEeCCCccccc--CHHHHhcc---C----CCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 999999999887653 23433321 1 6899999999998652 245566777788863 7999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|+.+.+...
T Consensus 136 ~~l~~~l~~~~~ 147 (158)
T PRK15467 136 QQLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHHhch
Confidence 999999988775
No 321
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=7.4e-17 Score=154.29 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC------------CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490 425 RCLLFGPQNAGKSALLNSFLE--RPFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~--~~~~~~~~------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~ 490 (643)
+|+++|.+|||||||+++|++ +.+...+. ++.+..+........++...+.+||++|++.+...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-- 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE-- 81 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH--
Confidence 799999999999999999997 44332220 11222222233333335667889999999988776
Q ss_pred cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHHh------
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQEL------ 562 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~~------ 562 (643)
...+++.+|++++|+|++++. +.....++..+... ++|+++|+||+|+..... ..+...++.+.+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ 154 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 678899999999999999753 23334444444332 789999999999965322 123334443322
Q ss_pred -CCCCcEEeeeccC-CHHHH
Q 006490 563 -GIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 563 -~~~~~~~vSa~~g-~i~~l 580 (643)
++ +++++||++| |+.++
T Consensus 155 ~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 155 LDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred Ccc-CEEEeehhcccccccc
Confidence 44 4899999999 87433
No 322
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=1.4e-16 Score=149.36 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=106.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------hh--hhccH
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KK--ILSNK 492 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~--~~~~~ 492 (643)
+++|+++|.+|+|||||+|+|++......+. +++........+... ...+.+||++|.... +. ..+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999987554443 333222222333333 234678999995322 11 11234
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHHhC---CCCc
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELG---IEPP 567 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~--~~~~~~~~~~~~~~---~~~~ 567 (643)
..+..+|++++|+|++++.+.... .+...+... +.|+++|+||+|+.... ...+..+.+.+.++ ..++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCce
Confidence 567899999999999998775432 333333332 78999999999997652 22333444445444 3469
Q ss_pred EEeeeccC-CHHHHHHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~ 587 (643)
+++||+++ |++++++.+.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 99999999 999999998764
No 323
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=7.7e-17 Score=169.02 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch----hhhH---HhhccCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKLN---EELKRAD 84 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~ad 84 (643)
.|+|||.||||||||+|+|++.+.. .++|.++..... ..+... +..+.+|||||+.+.. .+.. ..+++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl-G~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL-GVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE-EEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 7999999999999999999987632 234442222111 122222 6789999999985421 2223 3456799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 85 ~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
++|+|+|+++. ..++++. .|.+++..+. .++|+++|+||+|+... .+..+.+.+.++ .+++++||
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~iSA 309 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPISA 309 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEEeC
Confidence 99999999864 5666665 4888887654 37899999999998421 233455555555 36899999
Q ss_pred ccCCChhHHHHHHHHHHhC
Q 006490 159 TTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~ 177 (643)
+++.|++++++++.+.+..
T Consensus 310 ~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 324
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=2.3e-16 Score=154.11 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=128.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+++|.+..+...+.+|....+........+...+..+||++|++.+..+ +..++.+++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~--~~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL--RPEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH--HHHHhcCCCEEEE
Confidence 89999999999999999999999999999888777666666655545677889999999999988 8899999999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------------HHHHHHHHHHh--CCCCc
Q 006490 504 VYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQEL--GIEPP 567 (643)
Q Consensus 504 v~D~s~-~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------------~~~~~~~~~~~--~~~~~ 567 (643)
|+|.++ ..+++....|...+...... +.|+++|+||+|+...... ........... ....+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 999998 55566667788888876542 6899999999999875321 11111111111 12238
Q ss_pred EEeeec--cC-CHHHHHHHHHHHHh
Q 006490 568 IPVSMK--SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 568 ~~vSa~--~g-~i~~l~~~l~~~~~ 589 (643)
+++|++ ++ ++.++|..+...+.
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHH
Confidence 999999 88 99999999999874
No 325
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=4.2e-17 Score=155.72 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----CCCC----CCCCC-CCeeeCCcc------------cCCceeEEEEeCCCCCc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES----VPEK----VPPVH-APTRLPPDF------------YPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~----~~~~----~~~~~-~~~~~~~~~------------~~~~~~~~i~Dt~G~~~ 71 (643)
++|+++|++|||||||+++|++.. +... .+++. ........+ ...++.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 579999999999999999999731 1111 11111 001011111 23377899999999865
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHhh---
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF--- 147 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~~--- 147 (643)
+.......+..+|++++|+|+++........ .+ ...... ++|+++|+||+|+....... ...+..+.+...+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~-~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CL-VIGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HH-HHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444445567789999999998755444332 12 222333 67999999999987432110 1111112222122
Q ss_pred c-ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 148 ~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
+ ...+++++||++|.|+++|++.+...+..|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 123689999999999999999999887654
No 326
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.72 E-value=1e-16 Score=138.90 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=121.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.++++|.|+|..|+||||+.++|.+.... ...++.+- .......+++.+++||.+|+......|..|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf--~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGF--QIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccce--eeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 44899999999999999999999998732 22222211 1124456789999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCcc--chhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|..++..+++....+...+.. .-.+.|+++++||.|+...-.. +.....++.+.+... .+.+.|||.+|+++.+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLLE 168 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHHH
Confidence 9999998888887655555532 2247999999999999854221 011122333333322 2689999999999999
Q ss_pred HHHHHHHHHhC
Q 006490 167 VFYYAQKAVLH 177 (643)
Q Consensus 167 l~~~i~~~~~~ 177 (643)
-++|+...+..
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 327
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=4e-17 Score=154.00 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=97.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----------chhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 78 (643)
.....+|+|+|++|||||||+|+|++..+.....+..+.+.....+..+ ..+.+|||||... +......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 4567899999999999999999999986433333333333211111112 2699999999642 1122234
Q ss_pred hhc---cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc---cce
Q 006490 79 ELK---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE---IET 152 (643)
Q Consensus 79 ~~~---~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~ 152 (643)
+++ .+|++++|+|++++.+.... .+...+... ++|+++|+||+|+..... .......+.+.++. -.+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~---~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE---LNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH---HHHHHHHHHHHHhhccCCCc
Confidence 444 35899999999876655554 345666655 799999999999875322 12223333333332 126
Q ss_pred EEEeCcccCCChh
Q 006490 153 CVECSATTMIQVP 165 (643)
Q Consensus 153 ~~~~Sa~~~~gi~ 165 (643)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999984
No 328
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=8.1e-17 Score=149.70 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcchh--------hhHHhhc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELK 81 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 81 (643)
...+|+++|.+|+|||||+|++++.......+. ..........+...+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998874322111 1111112233445567899999999865432 2234588
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|++++|+|++++.+.. ...+...+... +.|+++|+||+|+...... ..+....+....+ ..+++++|++++
T Consensus 82 ~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~~~ 154 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISALKG 154 (168)
T ss_pred hCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEeccC
Confidence 899999999998872222 22355566555 7899999999998743222 2333444444443 347899999999
Q ss_pred CChhHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKA 174 (643)
Q Consensus 162 ~gi~~l~~~i~~~ 174 (643)
.|++++++.+.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999988654
No 329
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2e-16 Score=165.91 Aligned_cols=162 Identities=17% Similarity=0.116 Sum_probs=115.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhcc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALAS 497 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~ 497 (643)
...|+|+|.||||||||+|+|++.+..+...|.++.....-.+..+ ....+.++|++|... ...+ .+....+.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 3479999999999999999999876544333422222333334444 245678899998532 1111 113456778
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 498 ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
+|++++|+|+++. ..++....|..++..+.... .++|+++|+||+|+... .+..+.+++.++. +++++||++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~~---~e~l~~l~~~l~~-~i~~iSA~t 311 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPEA---EENLEEFKEKLGP-KVFPISALT 311 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcCC---HHHHHHHHHHhCC-cEEEEeCCC
Confidence 9999999999864 56677777888887664321 17899999999998432 3455667777775 499999999
Q ss_pred C-CHHHHHHHHHHHHhC
Q 006490 575 K-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~~ 590 (643)
+ |+++++++|.+.+..
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 9 999999999987643
No 330
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=8.5e-17 Score=154.94 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=102.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC-----------chhhhhhhc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS 490 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g-----------~~~~~~~~~ 490 (643)
..++|+++|++|||||||+|+|.+..+...+.|+++.. ...+... .+.+|||+| ++.+..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~-- 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE-- 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH--
Confidence 35799999999999999999999987654444533322 2223222 467899999 3444443
Q ss_pred cHHh----hccCCEEEEEEeCCChhhH----------HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH
Q 006490 491 NKEA----LASCDVTIFVYDSSDEYSW----------KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA 556 (643)
Q Consensus 491 ~~~~----~~~ad~illv~D~s~~~s~----------~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~ 556 (643)
+..+ +..++++++|+|++....+ .....+...+... ++|+++|+||+|+.... .+...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~~--~~~~~ 151 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL------GIPPIVAVNKMDKIKNR--DEVLD 151 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc------CCCeEEEEECccccCcH--HHHHH
Confidence 2233 3456899999998653211 0111222222222 79999999999997543 34566
Q ss_pred HHHHHhCCC--------CcEEeeeccCCHHHHHHHHHHHHh
Q 006490 557 RVTQELGIE--------PPIPVSMKSKDLNNVFSRIIWAAE 589 (643)
Q Consensus 557 ~~~~~~~~~--------~~~~vSa~~g~i~~l~~~l~~~~~ 589 (643)
++++.+++. +++++||++||+++++++|.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 677777751 379999999999999999998764
No 331
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-16 Score=133.52 Aligned_cols=168 Identities=18% Similarity=0.292 Sum_probs=136.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcC-CCcEEEEEEecCCchhh-hhhhccHHhhcc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGV-KKILSNKEALAS 497 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ 497 (643)
...||+++|..+||||+++..|+.++.....+ ||+.+.+ +-.++++ |-+..+.++||+|-... ..+ -..++.-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q~ 84 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQF 84 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhh--hHhHhcc
Confidence 46799999999999999999999877665544 6777754 4555665 44556778999996554 234 5678899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
+|++++|||..+++||+.+..+-.+|.+..... .+|+++++||+|+.++.++ .+.+..|++.-... .++++|...
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~ 161 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP 161 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence 999999999999999999888888888766555 7999999999999876554 77888899888887 899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 006490 576 DLNNVFSRIIWAAEHPHLNI 595 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~~~~~~ 595 (643)
.+-+.|..+.....+|....
T Consensus 162 sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred hhhhHHHHHHHhccCCcccc
Confidence 99999999999887666443
No 332
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=2.1e-16 Score=146.86 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=107.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccHHhhc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA 496 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~~~~~ 496 (643)
..+|+++|.+|+|||||+|++++.+.................+... ....+.+||++|....... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987655443211111222222222 3456788999996432221 01345678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-ccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
.+|++++|+|++++.+ +....+...+... +.|+++|+||+|+.. .....+....+....+..+++++|++++
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence 9999999999998733 2223334444443 689999999999984 3333455566666665557999999999
Q ss_pred -CHHHHHHHHHHH
Q 006490 576 -DLNNVFSRIIWA 587 (643)
Q Consensus 576 -~i~~l~~~l~~~ 587 (643)
|++++++.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 999999998764
No 333
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=9.6e-17 Score=173.15 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=112.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh-----------h
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------L 76 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 76 (643)
...++|+++|++|||||||+|+|++... ....++++... ....+..++..+.+|||||+...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS-IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc-EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3458999999999999999999998763 33344432221 22333345668999999997643321 1
Q ss_pred HHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEE
Q 006490 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV 154 (643)
Q Consensus 77 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (643)
..+++.+|++|+|+|++++.+..+. +++..+... ++|+++|+||+|+... .. ..++....+...+.. ..+++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCceE
Confidence 2478999999999999988777665 366666655 7999999999999721 11 222333334344332 24799
Q ss_pred EeCcccCCChhHHHHHHHHHHh
Q 006490 155 ECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 155 ~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++||++|.|++++|+++.+...
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 334
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.1e-16 Score=152.93 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=101.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC----CCCCC---CC--CcccceEEEEEEc----------CCCcEEEEEEecCCchh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---AP--TTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG 484 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~----~~~~~---~~--t~~~~~~~~~v~~----------~g~~~~~~i~d~~g~~~ 484 (643)
++|+++|++|+|||||+++|++.. +...+ .+ |....+....+.. .+....+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999999731 11111 11 2222222222321 12355778899999865
Q ss_pred hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH----HH
Q 006490 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV----TQ 560 (643)
Q Consensus 485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~----~~ 560 (643)
+... .......+|++++|+|++++.+.+....+. ..... +.|+++|+||+|+..........+++ ..
T Consensus 81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 4332 345567899999999999865444332222 11111 67999999999997533221122222 22
Q ss_pred Hh---CC--CCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 561 EL---GI--EPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 561 ~~---~~--~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
.+ +. .+++++||++| |+++++++|..++..|
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 21 12 25899999999 9999999999988644
No 335
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=9.9e-17 Score=169.50 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcc--hhhhH------Hhhcc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR 82 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~ 82 (643)
.+|+|+|.||||||||+|+|++... +.+.++++.... ....+ .+...+.+|||+|+... ...+. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998773 333443222222 12222 22337899999998432 22222 34688
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
||++|+|+|++++.+.+.+.. |...+.... .++|+++|+||+|+...... .... ...+ ...++++||++|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG 347 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG 347 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence 999999999999988777642 555554432 37999999999998643111 1111 1111 112588999999
Q ss_pred CChhHHHHHHHHHHh
Q 006490 162 IQVPDVFYYAQKAVL 176 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (643)
.|++++++++.+.+.
T Consensus 348 ~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 348 AGIPLLFQALTERLS 362 (426)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
No 336
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=140.37 Aligned_cols=156 Identities=15% Similarity=0.226 Sum_probs=123.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
..++.+.++|-.++|||||+|.+..+.+.++.-++.+-. ...++.+.+.+.+||.||+..+..+++.|++.++++++|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 456889999999999999999999988877733322221 124667789999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--c----cceEEEeCcccCC
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--E----IETCVECSATTMI 162 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~ 162 (643)
+|+.+++..+...+++...+.+.. .++|+++.|||.|+...-.. ..+..+++ . -..|+.+|+++..
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-------~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-------IALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH-------HHHHHHhCccccccceEEEEEEEEcCCc
Confidence 999999888888877777775532 48999999999999875322 11222222 1 1268999999999
Q ss_pred ChhHHHHHHHHH
Q 006490 163 QVPDVFYYAQKA 174 (643)
Q Consensus 163 gi~~l~~~i~~~ 174 (643)
||+.+.+|+++.
T Consensus 169 Nid~~~~Wli~h 180 (186)
T KOG0075|consen 169 NIDITLDWLIEH 180 (186)
T ss_pred cHHHHHHHHHHH
Confidence 999999999875
No 337
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.72 E-value=1.5e-17 Score=167.23 Aligned_cols=228 Identities=12% Similarity=0.101 Sum_probs=145.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCC-CC------------eeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----PPVH-AP------------TRLPPDFYPDRVPVTIIDTSSSLENKGK 75 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----~~~~-~~------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (643)
+|+|+|++|+|||||+++|+........ .+.. .+ ......+..+++.+++|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 4899999999999999999864322111 1100 00 0011223356788999999998877777
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
+..+++.+|++++|+|++........ ..+..+... ++|+++|+||+|.... ...+.+..+...++...-.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence 88999999999999999887555433 244455555 7899999999998764 244556667777764333566
Q ss_pred eCcccCCChhHHHHHHHHHHhCCCCC-------CCccccccchHHHHHHHHhhhhhcCCCCCC-----CCChHHHHHHhh
Q 006490 156 CSATTMIQVPDVFYYAQKAVLHPTAP-------LFDHDEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAELNEFQV 223 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~el~~~~~ 223 (643)
++..+|.|+..+.+.+.......... ................++.+....|..++. .+..+++.....
T Consensus 153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~ 232 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR 232 (268)
T ss_pred ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 77888989888777665544322110 000000011112223344444444443333 445555433333
Q ss_pred h----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490 224 K----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (643)
Q Consensus 224 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (643)
+ ++++++...+++.+++.+..+.|+|
T Consensus 233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 2 6888999999999999999998875
No 338
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.71 E-value=3e-17 Score=143.79 Aligned_cols=113 Identities=32% Similarity=0.432 Sum_probs=84.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CC-CCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP-EK-VPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
||+|+|++|||||||+++|++..+. .. .....+.+. ...........+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 11 111111111 1223334455599999999988877777889999999999
Q ss_pred EECCCcccHHHHHHH--HHHHHHhcCCCCcEEEEEeccc
Q 006490 90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD 126 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~--~~~~l~~~~~~~pvilv~NK~D 126 (643)
||++++.+++.+... |+..++..+.++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999997642 6666676667899999999998
No 339
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=9.8e-17 Score=150.91 Aligned_cols=158 Identities=21% Similarity=0.188 Sum_probs=103.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhhh-ccHHhhccCCEE
Q 006490 428 LFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKEALASCDVT 501 (643)
Q Consensus 428 ivG~~nvGKSSLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~~-~~~~~~~~ad~i 501 (643)
|+|++|||||||+|+|.+.+.. ..+..++.. .....+... ....+.+||++|.... +.+. +....++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE-PNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeec-CcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999998752 222223322 222223343 1456788999996321 1111 134567889999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHHhcCC----CCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490 502 IFVYDSSDE------YSWKRTKELLVEVARLGED----SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 502 llv~D~s~~------~s~~~~~~~~~~i~~~~~~----~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
++|+|++++ .++.....|...+...... ...++|+++|+||+|+....................+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 5677777777776543221 001689999999999976443322211112222333599999
Q ss_pred eccC-CHHHHHHHHHHH
Q 006490 572 MKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~ 587 (643)
|+++ |++++++.+...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 9999 999999998754
No 340
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.71 E-value=5e-17 Score=137.72 Aligned_cols=157 Identities=19% Similarity=0.293 Sum_probs=127.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+.+.++|-.|+|||||+|....+.+...-.||.+-+ ...+ ..+.....+||.+|+..+.++ +..+++.+++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~--tkgnvtiklwD~gGq~rfrsm--WerycR~v~a 91 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSM--WERYCRGVSA 91 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEe--ccCceEEEEEecCCCccHHHH--HHHHhhcCcE
Confidence 456889999999999999999999888777666776643 3333 226778889999999999998 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~ 573 (643)
+++|+|+++++.+...++.+..+....... ++|+++++||.|+... -....+..++|+. -++.+||+
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCccc----ccHHHHHHHhCccccccceEEEEEEEEc
Confidence 999999999988887777777776655554 8999999999998763 2344566677764 26999999
Q ss_pred cC-CHHHHHHHHHHHHh
Q 006490 574 SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~ 589 (643)
.. |++-+.++|++...
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99 99999999998764
No 341
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=7.6e-17 Score=151.68 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=101.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcc----hhh---hHHhhccCCEEE
Q 006490 17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGK---LNEELKRADAVV 87 (643)
Q Consensus 17 lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~~---~~~~~~~ad~il 87 (643)
|+|++|||||||+|+|++... ..++++++... ....+... +..+.+|||||+... ... ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP-NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecC-cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999874 23333321111 12223344 788999999997431 112 234578899999
Q ss_pred EEEECCCc------ccHHHHHHHHHHHHHhcC--------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490 88 LTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (643)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (643)
+|+|+++. .+++... .|...+.... .++|+++|+||+|+...... .. ...... .......+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~-~~~~~~--~~~~~~~~ 154 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-EE-ELVREL--ALEEGAEV 154 (176)
T ss_pred EEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-HH-HHHHHH--hcCCCCCE
Confidence 99999988 4666655 3666665332 37999999999999754332 11 101111 11222469
Q ss_pred EEeCcccCCChhHHHHHHHHH
Q 006490 154 VECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
+++||+++.|++++++++...
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEehhhhcCHHHHHHHHHhh
Confidence 999999999999999987653
No 342
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.71 E-value=1.7e-16 Score=139.09 Aligned_cols=114 Identities=22% Similarity=0.322 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~--~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
||+|+|++|||||||+++|++.... ..+.++....+........+....+.+||+.|++.+... ....+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ--HQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT--SHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc--ccchhhcCcEEE
Confidence 7999999999999999999998876 122234555566566666655556789999999877665 455689999999
Q ss_pred EEEeCCChhhHHHHHHH---HHHHHHhcCCCCCCCcEEEEEeCCC
Q 006490 503 FVYDSSDEYSWKRTKEL---LVEVARLGEDSGYGVPCLLIASKDD 544 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~---~~~i~~~~~~~~~~~pvilv~NK~D 544 (643)
+|||++++.|++.+..+ +..+..... +.|+++|+||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~----~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK----NIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHSS----CSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccCC----CCCEEEEEeccC
Confidence 99999999999987554 555554333 799999999998
No 343
>PTZ00099 rab6; Provisional
Probab=99.71 E-value=1.4e-16 Score=148.98 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-
Q 006490 36 SVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL- 112 (643)
Q Consensus 36 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~- 112 (643)
.|.+.+.++.+... ....++...+.+.||||+|++.+...+..++++||++|+|||++++.+++.+. .|+..+...
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhc
Confidence 45556555554332 33455566789999999999999999999999999999999999999999997 588887553
Q ss_pred CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 113 ~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
.++.|++||+||+|+...+.+ ..+ ....+...++ ..+++|||++|.||+++|+++.+.+....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v-~~~-e~~~~~~~~~--~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKV-TYE-EGMQKAQEYN--TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCC-CHH-HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 457899999999999765444 333 3445556665 25899999999999999999999876433
No 344
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.71 E-value=9.7e-17 Score=157.23 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=131.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----C-CCCC------------eeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVP-----P-VHAP------------TRLPPDFYPDRVPVTIIDTSSSLENKGK 75 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-----~-~~~~------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (643)
+|+++|++|+|||||+++|+...-..... + +... ......+..+++++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 48999999999999999998753111100 0 0000 0012234467889999999999998888
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
+..+++.+|++++|+|+++..... ...++..+++. ++|+++|+||+|+... ..++.+..+...++.- +++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~--~~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~ 150 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ--TRILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP 150 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH--HHHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence 889999999999999998765433 23467777766 7999999999998754 3456677788888742 333
Q ss_pred eCcccCCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCC-----CCCCChHHHHHHhhh------
Q 006490 156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELNEFQVK------ 224 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el~~~~~~------ 224 (643)
+.-- ++...+. ..... ..+.++.+.+..|..+ ++.++.+|+....++
T Consensus 151 ~~~p---~~~~~~~----------------~~~~~---~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 151 MQKV---GLAPNIC----------------ETNEI---DDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred EECC---cEeeeee----------------eeeec---cHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 3211 0000000 00000 0222222222222222 335666666443333
Q ss_pred ----hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490 225 ----CFNAPLQPAEIVGVKRVVQEKQHDG 249 (643)
Q Consensus 225 ----~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (643)
++++++...+++.+++.+.+++|+|
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 6889999999999999999999875
No 345
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=1.9e-16 Score=151.94 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----------chhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 78 (643)
.....+|+|+|++|||||||+|+|++..+.....+..+.++.. .+...+..+.||||||+.. +......
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4456889999999999999999999987544434333333311 1111246899999999642 2223334
Q ss_pred hhcc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490 79 ELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 79 ~~~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
+++. ++++++|+|.+.+.+.... .+...+... ++|+++++||+|+..........+.+....... ...+++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--DDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--CCceEE
Confidence 4444 4688899998776544332 244455544 789999999999865422101111122222221 236899
Q ss_pred eCcccCCChhHHHHHHHHHH
Q 006490 156 CSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~ 175 (643)
+||+++.|++++++.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999887654
No 346
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=3e-16 Score=148.01 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCch----------hhhhh
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKI 488 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~----------~~~~~ 488 (643)
...+.++|+|+|++|+|||||+|+|++..+...+.++.+.......+..+ . .+.+||++|.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHH
Confidence 34567899999999999999999999986433333333332333334433 2 57789999942 22222
Q ss_pred hccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh
Q 006490 489 LSNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL 562 (643)
Q Consensus 489 ~~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~ 562 (643)
...+++ .+|++++|+|++++.+.... .++..+... +.|+++|+||+|+...... .+.++......
T Consensus 91 --~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 91 --IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred --HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 223343 46899999999987554433 333344332 7899999999999754332 23334444444
Q ss_pred CCC-CcEEeeeccC-CHH
Q 006490 563 GIE-PPIPVSMKSK-DLN 578 (643)
Q Consensus 563 ~~~-~~~~vSa~~g-~i~ 578 (643)
+.. +++++||++| |++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 322 5999999999 873
No 347
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.4e-16 Score=169.00 Aligned_cols=151 Identities=20% Similarity=0.267 Sum_probs=106.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhh-h-hccHHhhc
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKK-I-LSNKEALA 496 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~-~-~~~~~~~~ 496 (643)
++|+|+|++|||||||+|+|++.....+.. +.++.+.....+...| ..+.+|||+|.+. +.. + .....++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987654443 4333334444555553 6778999999865 211 1 11456789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
.||++++|+|++++.+... ......+... ++|+++|+||+|+.... +...++ ..+++..++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~-~~~~~~l~~~------~~piilv~NK~D~~~~~---~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPAD-EEIAKILRKS------NKPVILVVNKVDGPDEE---ADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCcEEEEEECccCccch---hhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999998644322 2222233333 78999999999975421 222222 4567766899999999
Q ss_pred CHHHHHHHHHHH
Q 006490 576 DLNNVFSRIIWA 587 (643)
Q Consensus 576 ~i~~l~~~l~~~ 587 (643)
|++++++.+.+.
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999883
No 348
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=7.6e-17 Score=160.72 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=139.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----C--------C---CCCCee--eCCcccCCceeEEEEeCCCCCcchhh
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----P--------P---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGK 75 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----~--------~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (643)
+|+|+|++|+|||||+++|+...-.... . + ..+.+. ....+.++++.+++|||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999743211100 0 0 000111 11233456889999999999888888
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (643)
+..+++.+|++|+|+|+........ ..++..++.. ++|+++++||+|+.... .+.....+...++. +...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence 8899999999999999877543332 2466666666 79999999999987532 33444555555543 2246
Q ss_pred EEeCcccC-CChhHHHHHHHHHHh-CCC--CC------CCccccccchHHHHHHHHhhhhhcCCCCCC-----CCChHHH
Q 006490 154 VECSATTM-IQVPDVFYYAQKAVL-HPT--AP------LFDHDEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAEL 218 (643)
Q Consensus 154 ~~~Sa~~~-~gi~~l~~~i~~~~~-~~~--~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~el 218 (643)
+++|+..+ .|+-+++. ..+. +.. .. ..........+.....++.+.+..|..++. .++.+|+
T Consensus 153 ~Pisa~~~f~g~vd~~~---~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el 229 (270)
T cd01886 153 LPIGEEDDFRGVVDLIE---MKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI 229 (270)
T ss_pred eccccCCCceEEEEccc---cEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 88888744 55555543 2111 111 10 000001111122233345555544444433 4555555
Q ss_pred HHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490 219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG 249 (643)
Q Consensus 219 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (643)
...... ++++++...+++.+++.+..++|+|
T Consensus 230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 433332 6889999999999999999999875
No 349
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=5e-16 Score=155.98 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=116.5
Q ss_pred hhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC------chhhhhh
Q 006490 415 KKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP------EEGVKKI 488 (643)
Q Consensus 415 ~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g------~~~~~~~ 488 (643)
++.+.......|+++|.+|+|||||+|+|++...........+-+-..+.+.+++ ....++-||.| +....++
T Consensus 184 R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 184 RKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred hhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHH
Confidence 3334455678999999999999999999998765433332222223344566663 55667788888 4445556
Q ss_pred hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcE
Q 006490 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPI 568 (643)
Q Consensus 489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 568 (643)
..+......||++++|+|+++|...+.+.....-+.+.... .+|+|+|.||+|+..+.. ....+....+ ..+
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~~~---~~~~~~~~~~--~~v 334 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLEDEE---ILAELERGSP--NPV 334 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCchh---hhhhhhhcCC--CeE
Confidence 66888999999999999999996655554444444443222 689999999999876432 1222222222 479
Q ss_pred EeeeccC-CHHHHHHHHHHHHh
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++||++| |++.|.+.|.+.+.
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhh
Confidence 9999999 99999999999875
No 350
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=7.6e-16 Score=140.34 Aligned_cols=153 Identities=24% Similarity=0.359 Sum_probs=110.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEe
Q 006490 428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506 (643)
Q Consensus 428 ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D 506 (643)
|+|++|+|||||+|++.+... .....+|. ...........+....+.+||++|....... ....++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--RRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhH--HHHHhcCCCEEEEEEE
Confidence 589999999999999999876 34443454 5555555555545677889999998776655 5678899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-HHHHHHhCCCCcEEeeeccC-CHHHHHHHH
Q 006490 507 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKSK-DLNNVFSRI 584 (643)
Q Consensus 507 ~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l 584 (643)
++++.++.....|........... +.|+++|+||+|+.......... ..........+++++|++++ |+.+++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999988887777622222221222 89999999999987644332221 22233333345999999999 999999987
Q ss_pred H
Q 006490 585 I 585 (643)
Q Consensus 585 ~ 585 (643)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 351
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=1.1e-15 Score=146.66 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=102.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~~ 489 (643)
.+..++|+|+|.+|||||||+|+|++.++...+.++.+....+..... ...+.+||++|. +.+..+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~- 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL- 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH-
Confidence 446689999999999999999999998644444444333333333332 246778999994 222222
Q ss_pred ccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--C
Q 006490 490 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--I 564 (643)
Q Consensus 490 ~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~ 564 (643)
...+++ .++++++|+|++++.+... ..+...+... ++|+++++||+|+............+.+.++ .
T Consensus 97 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 97 -IEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred -HHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 233343 4578999999987654322 1222223222 7899999999999764433222222333332 2
Q ss_pred CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 565 EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 565 ~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.+++++||++| |++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999 99999999987764
No 352
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=5.9e-16 Score=142.51 Aligned_cols=147 Identities=21% Similarity=0.272 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccHHhhc
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA 496 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~~ 496 (643)
++|+++|++|+|||||+|++.+........ ++++.......+... ...+.+||++|...... ..+....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999987543332 333333333334443 34677899999643321 112445678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
.+|++++|+|++++.+......+.. .. +.|+++|+||+|+...... ..... ..+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~----~~~vi~v~nK~D~~~~~~~------~~~~~-~~~~~~~Sa~~~~ 143 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PA----DKPIIVVLNKSDLLPDSEL------LSLLA-GKPIIAISAKTGE 143 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hc----CCCEEEEEEchhcCCcccc------ccccC-CCceEEEECCCCC
Confidence 9999999999998777555443322 11 7999999999999764322 22222 235999999999
Q ss_pred CHHHHHHHHHHHH
Q 006490 576 DLNNVFSRIIWAA 588 (643)
Q Consensus 576 ~i~~l~~~l~~~~ 588 (643)
|+++++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999988754
No 353
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.7e-16 Score=159.89 Aligned_cols=228 Identities=21% Similarity=0.195 Sum_probs=144.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCc-chh--------
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE-NKG-------- 74 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~-------- 74 (643)
..+.+++|+|+|+||||||||+|.|...+ ++...|| +|+ +...++.+|+++.+.||+|+.+ ..+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~ 340 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIE 340 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHH
Confidence 35667999999999999999999999988 4444555 444 7778889999999999999876 222
Q ss_pred hhHHhhccCCEEEEEEECC--CcccHHHHHHHHHHHHHhc-------CCCCcEEEEEecccCCCCCccchhhhhhhHHH-
Q 006490 75 KLNEELKRADAVVLTYACN--QQSTLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM- 144 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~--~~~s~~~~~~~~~~~l~~~-------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~- 144 (643)
.....+++||++++|+|+. +-.+...+. ..+...... ....|++++.||.|+...-....... .....
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~ 418 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSA 418 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eecccc
Confidence 2236788999999999983 333333322 233333221 12489999999999987522101101 11111
Q ss_pred HhhcccceEEEeCcccCCChhHHHHHHHHHHhCCC------CCCCcccccc-chHHHHH-HHHhhhhhcCCCCCCCCChH
Q 006490 145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT------APLFDHDEQT-LKPRCVR-ALKRIFIICDHDMDGALNDA 216 (643)
Q Consensus 145 ~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~------~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~ 216 (643)
...+.+....++|+++++|+.+|.+.+.+.+.... ++.....+.. ....|.. .+.+.+...+...|..+..+
T Consensus 419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~ 498 (531)
T KOG1191|consen 419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGE 498 (531)
T ss_pred ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccc
Confidence 12223334677999999999999998888663222 1222222222 2222222 46666666666678888888
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490 217 ELNEFQVKCFNAPLQPAEIVGVKRV 241 (643)
Q Consensus 217 el~~~~~~~~~~~~~~~~~~~~~~~ 241 (643)
+++..+...-.... ..+.+.+.+.
T Consensus 499 ~lR~a~~~i~r~tg-gggte~vls~ 522 (531)
T KOG1191|consen 499 PLRLAQRSIARITG-GGGTEEVLSS 522 (531)
T ss_pred hHHHHHhhhcccCC-CCchhhHHHH
Confidence 88877766544443 3444444443
No 354
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=3.1e-16 Score=166.27 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----h---hHHhhccC
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----K---LNEELKRA 83 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~a 83 (643)
...|+|||.||||||||+|+|++.+.. .++|.++... ....+...+..+.+|||||+..... + .-..++.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P-~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP-NLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc-eEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 357999999999999999999987632 3344432211 2233445567899999999753211 1 12456789
Q ss_pred CEEEEEEECCCc----ccHHHHHHHHHHHHHhcC------------CCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490 84 DAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (643)
Q Consensus 84 d~il~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 147 (643)
|++|+|+|+++. ..++++. .|..++..+. .++|+|+|+||+|+...... .+.........
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~~~ 313 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELEAR 313 (500)
T ss_pred CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHHHc
Confidence 999999999753 3444443 2444443332 26899999999998643221 11122222222
Q ss_pred cccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490 148 REIETCVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 148 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
+ .+++++||+++.|+++|++++.+.+..
T Consensus 314 g--~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 G--WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred C--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 368999999999999999999887643
No 355
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.1e-16 Score=141.36 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=126.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+++|+++|--|+||||++.+|-...++...|++..... .+...++.|.+||.+|++.....+..|++..+++||
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 56679999999999999999999999888777665333222 344558999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhh--hhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|.++++.+.....++...+.... .+.|+++.+||.|+...-...... -.+..+... --.+..|+|.+|+|+.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~---~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSR---NWHIQSTCAISGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCC---CcEEeeccccccccHH
Confidence 9999999999999887777776543 589999999999998764321111 111111111 1146789999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
|.++++...+.
T Consensus 168 egl~wl~~~~~ 178 (181)
T KOG0070|consen 168 EGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 356
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.68 E-value=6.3e-16 Score=174.10 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=113.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh----------hHHh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------LNEE 79 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 79 (643)
+.++|+++|+||||||||+|+|++.+ .+.++++++. ......+..++.++.+|||||...+... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 45789999999999999999999876 3445665332 2244456677889999999998765321 1123
Q ss_pred --hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 80 --~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
...+|++++|+|+++.+... +|..++.+. ++|+++|+||+|+.+.+.. ....+.+.+.++ .+++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG--~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLG--CPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhC--CCEEEEE
Confidence 24799999999988764422 355566666 7999999999998754433 233566777777 3799999
Q ss_pred cccCCChhHHHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~ 175 (643)
|++|+|++++.+.+....
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999887754
No 357
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=4.5e-16 Score=141.87 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=108.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC
Q 006490 17 VVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 17 lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~ 94 (643)
|+|++|+|||||+|++.+... .....++. ............+..+.+||+||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999876 33332222 1122333333457889999999988877777888999999999999999
Q ss_pred cccHHHHHHHH-HHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHH
Q 006490 95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172 (643)
Q Consensus 95 ~~s~~~~~~~~-~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 172 (643)
+.+.......+ .........++|+++|+||+|+...... .... ......... ..+++++|+.++.|+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SEEE-LAEQLAKEL-GVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HHHH-HHHHHHhhc-CCcEEEEecCCCCChHHHHHHHh
Confidence 98888877421 2222334568999999999998765433 1111 011222222 24799999999999999999875
No 358
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.2e-16 Score=160.54 Aligned_cols=194 Identities=19% Similarity=0.150 Sum_probs=126.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh-------hhhhhc
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILS 490 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~-------~~~~~~ 490 (643)
.+.+++|+|+|+||||||||+|+|.+.++.++++ | ||++ .....++++| .++.+.||+|-.+ ...+.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRD-aiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRD-AIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchh-hheeEeecCC--eEEEEEeccccccccCChhHHHhHHH
Confidence 3567999999999999999999999999999998 4 5555 3344455653 5566699998433 222566
Q ss_pred cHHhhccCCEEEEEEeC--CChhhHHHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCCCCc-cccHHHHHHHHHHhC-
Q 006490 491 NKEALASCDVTIFVYDS--SDEYSWKRTKELLVEVARLGE---DSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELG- 563 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~--s~~~s~~~~~~~~~~i~~~~~---~~~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~- 563 (643)
+...++.||++++|+|+ ++-.+...+.+.+.....-.. ......|++++.||+|+..+ .+.......+.+..+
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR 421 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence 88899999999999999 443333333344443321110 00115789999999999875 222221111222211
Q ss_pred --CCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhH
Q 006490 564 --IEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLV 616 (643)
Q Consensus 564 --~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 616 (643)
++...++|++++ |++.|...+.+.+........+......+++++++++.+..
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~ 477 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAA 477 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhh
Confidence 223456999999 99999999999876444433333444455677776666653
No 359
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=1.4e-15 Score=166.54 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=111.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
..++.+|+++|.+|+|||||+++|.+..+...+.++++.+.....+.++ +...+.+|||+|++.+..+ +...+..+|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~--r~rga~~aD 160 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSM--RARGAKVTD 160 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhH--HHhhhccCC
Confidence 3456799999999999999999999988766555544444444455554 2337788999999988877 567789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------CCcEEee
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVS 571 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS 571 (643)
++++|+|++++..-+. ...+...... ++|+++++||+|+.... .+.........++ .+++++|
T Consensus 161 iaILVVda~dgv~~qT-~e~i~~~~~~------~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 161 IVVLVVAADDGVMPQT-IEAISHAKAA------NVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEEEEECCCCCCHhH-HHHHHHHHHc------CCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 9999999987543222 2222333222 79999999999986421 2222233322321 2589999
Q ss_pred eccC-CHHHHHHHHHHH
Q 006490 572 MKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~ 587 (643)
|++| |++++++++...
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 9999 999999998764
No 360
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.68 E-value=3.8e-16 Score=148.49 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=111.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------CCCCCCeeeCCccc--CCceeEEEEeCCCC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------------PPVHAPTRLPPDFY--PDRVPVTIIDTSSS 69 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~ 69 (643)
+..+|+++|+.++|||||+++|+........ .+.... .....+. ..+..++++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~-~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID-LSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS-SEEEEEEBTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc-cccccccccccccceeecccccc
Confidence 4578999999999999999999865421110 010000 0112222 56788999999999
Q ss_pred CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH----H
Q 006490 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----Q 145 (643)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~----~ 145 (643)
.++.......+..+|++|+|+|+.+....... ..+..++.. ++|+++|+||+|+... ...+..+++. +
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhcc
Confidence 98888888999999999999998876544432 466667776 8999999999999832 2333334333 3
Q ss_pred hhcc----cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 146 QFRE----IETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 146 ~~~~----~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
.++. ..+++++||.+|.|+++|++.+.+.++
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3321 347999999999999999998887653
No 361
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=6.3e-16 Score=169.23 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=107.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..+..+|+|+|++|+|||||+++|.+..+.... ++.+..... ..+.. ++..+.||||||++.+..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~-~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGA-YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceE-EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345578999999999999999999988765543 222111111 11222 233799999999999988888899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH------HHhhcccceEEEeCccc
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSATT 160 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~ 160 (643)
|+|+|+++....+... .+...+.. ++|+++++||+|+.... .+.....+ ...++...+++++||++
T Consensus 163 ILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999988754333322 23334444 79999999999986432 11111111 11222223689999999
Q ss_pred CCChhHHHHHHHH
Q 006490 161 MIQVPDVFYYAQK 173 (643)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (643)
|.|++++++++..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999998764
No 362
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=1.6e-15 Score=167.04 Aligned_cols=159 Identities=13% Similarity=0.198 Sum_probs=115.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCc------ccceEEEE--EEc---CCCcEEEEEEecCCchhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAPTT------GEQYAVNV--VDQ---PGGNKKTLILQEIPEEGV 485 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-------~~~~t~------~~~~~~~~--v~~---~g~~~~~~i~d~~g~~~~ 485 (643)
-+|+|+|.+++|||||+++|+...... .+..+. +.++.... +.+ +|....+.+|||+|++.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999999753221 111111 12222222 222 344567889999999988
Q ss_pred hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 565 (643)
... +..++..||++++|+|++++.+++....|...+. . ++|+++|+||+|+.... ..+..+++.+.+++.
T Consensus 84 ~~~--v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYE--VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGLD 153 (595)
T ss_pred HHH--HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCCC
Confidence 776 6788999999999999999877776666654432 2 78999999999986432 233445667777764
Q ss_pred --CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 566 --~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
+++++||++| |++++|++|.+.+..|.
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4799999999 99999999999876553
No 363
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.67 E-value=8.9e-16 Score=145.95 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=110.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C-----CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------A-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------~-----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~ 483 (643)
+..+|+++|..++|||||+++|++....... . ...+................+.++|++|+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999965432111 0 011112223333312356788899999998
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH----HHH
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----RVT 559 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~----~~~ 559 (643)
.+... ....+..+|++|+|+|+.++.. ....+.+..+... ++|+++|+||+|+... ...+..+ .+.
T Consensus 82 ~f~~~--~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 82 DFIKE--MIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL------GIPIIVVLNKMDLIEK-ELEEIIEEIKEKLL 151 (188)
T ss_dssp HHHHH--HHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT------T-SEEEEEETCTSSHH-HHHHHHHHHHHHHH
T ss_pred ceeec--ccceecccccceeeeecccccc-ccccccccccccc------ccceEEeeeeccchhh-hHHHHHHHHHHHhc
Confidence 77654 6778899999999999998765 3345555555555 8999999999999842 2222333 444
Q ss_pred HHhCCC-----CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 560 QELGIE-----PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 560 ~~~~~~-----~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+.+++. |++++||++| |+++|++.|.+.+.
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 555443 5999999999 99999999988653
No 364
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.67 E-value=2.3e-16 Score=157.12 Aligned_cols=226 Identities=13% Similarity=0.041 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------CC------------eeeCCcccCCceeEEEEeCCCCCc
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------AP------------TRLPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----------~~------------~~~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
+|+|+|++|+|||||+++|+...-.....+.. .. ......+..+++++++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 59999999999999999998643111111100 00 001124556789999999999988
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE 151 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (643)
+......+++.+|++|+|+|+++..... ...++...... ++|+++++||+|+.... ....+..+...++.-.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~--~~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ--TRKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGIDC 155 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH--HHHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCCc
Confidence 8777778899999999999988764322 22455565555 79999999999986542 2233455666665321
Q ss_pred eEEEeCcccCCChhHHHHHHHHHHhCC-C--CC-------CCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHH-
Q 006490 152 TCVECSATTMIQVPDVFYYAQKAVLHP-T--AP-------LFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNE- 220 (643)
Q Consensus 152 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~-~--~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~- 220 (643)
-.+.+....+.++..+.+.+...+... . .. ..........+.....+++.+...+...+. + .+-+..
T Consensus 156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~-~-~~~~~~~ 233 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGA-G-PEFDQEA 233 (267)
T ss_pred eeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhh-h-HHHhHHH
Confidence 122222233433333333332222111 1 00 000111111122233444444332211111 0 001111
Q ss_pred Hhhh-----hcCCCCCHHHHHHHHHHHHhhccCC
Q 006490 221 FQVK-----CFNAPLQPAEIVGVKRVVQEKQHDG 249 (643)
Q Consensus 221 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (643)
.... ++++++...++..|++.+..++|+|
T Consensus 234 ~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 234 FLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred HHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 1111 6889999999999999999999875
No 365
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.66 E-value=7.7e-16 Score=164.21 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=120.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc------hhhhHHhh--c
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN------KGKLNEEL--K 81 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~--~ 81 (643)
+..+|+++|+||||||||+|+|++.+ .+.++||++ ..++.+.+...+..++++|.||.... +.....++ .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45679999999999999999999987 788899943 34466777788888999999997642 22233333 4
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|+++.|+|+++.+..-. +.-++.+. ++|++++.|++|..+...+ ..+ .+.+.+.+| .+++++||+.|
T Consensus 81 ~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~ID--~~~L~~~LG--vPVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKKRGI-RID--IEKLSKLLG--VPVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHhcCC-ccc--HHHHHHHhC--CCEEEEEeecC
Confidence 5799999999988765443 33344555 8999999999998876655 333 356777787 48999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006490 162 IQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (643)
.|++++.+.+.+......
T Consensus 150 ~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 150 EGLEELKRAIIELAESKT 167 (653)
T ss_pred CCHHHHHHHHHHhccccc
Confidence 999999999988765444
No 366
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=7.6e-16 Score=170.63 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=111.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCC---CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHA---PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
..+..+|+|+|++|+|||||+++|.+..+.... ++.+. .+.........+..+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 345678999999999999999999987765432 22111 11111122234688999999999999888889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH------HHhhcccceEEEeCc
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSA 158 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa 158 (643)
++|+|+|+++....+... .+..+... ++|+|+|+||+|+.... .+.....+ ...++...+++++||
T Consensus 321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999998764433332 23344444 79999999999987532 11211222 223343357999999
Q ss_pred ccCCChhHHHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQKA 174 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~ 174 (643)
++|.|+++|++.+...
T Consensus 393 ktG~GIdeLle~I~~l 408 (742)
T CHL00189 393 SQGTNIDKLLETILLL 408 (742)
T ss_pred CCCCCHHHHHHhhhhh
Confidence 9999999999987664
No 367
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.66 E-value=1.4e-15 Score=167.43 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLENK 73 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~-------~~~~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 73 (643)
+|+|+|++++|||||+++|+... +...+..+ .+.+. ....+ +...+.++||||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 59999999999999999998753 11111110 01111 11111 2345889999999999998
Q ss_pred hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ce
Q 006490 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET 152 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (643)
..+..+++.+|++|+|+|+++..+.+... .|...+. . ++|+++|+||+|+.... .++...++.+.++.- ..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCcce
Confidence 88999999999999999999887776655 3544333 3 78999999999986432 223334454544421 14
Q ss_pred EEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 153 CVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
++++||++|.|++++++.+.+.+..+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 799999999999999999998876553
No 368
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.1e-15 Score=170.97 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
..+...|+|+|+.|+|||||+++|.+..+.... .+.+.. .....+...+..++||||||++.|..++...+..+|++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~-iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH-IGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee-ccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 456678999999999999999999987765432 221111 111123344678999999999999988888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCCh
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|||+++....+... .+..++.. ++|+|+|+||+|+...... .....+ ..+...++...+++++||++|.||
T Consensus 366 LVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 366 LVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999998754333322 22334444 7999999999999653211 111111 112233333347999999999999
Q ss_pred hHHHHHHHH
Q 006490 165 PDVFYYAQK 173 (643)
Q Consensus 165 ~~l~~~i~~ 173 (643)
+++++.+..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999998764
No 369
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=1.2e-15 Score=146.66 Aligned_cols=164 Identities=18% Similarity=0.155 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC---CCC-CCCCCCCee-eCCcc-------------------------cC------
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVHAPTR-LPPDF-------------------------YP------ 56 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~---~~~-~~~~~~~~~-~~~~~-------------------------~~------ 56 (643)
++|+|+|+.|+|||||+.++.+... ... ..+..-... ..... ..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 111 000000000 00000 00
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~ 136 (643)
....+.||||||++.+...+...+..+|++++|+|++++........ .+..+.... ..|+++|+||+|+.........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC-CCcEEEEEEchhccCHHHHHHH
Confidence 12679999999988877777778888999999999987421111111 222333331 3579999999998753211011
Q ss_pred hhhhhHHHHhhc-ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 137 EEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
.+.+..+...+. ...+++++||++|.|++++++.+.+.+..+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 122222222211 123689999999999999999998876543
No 370
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.65 E-value=1.4e-15 Score=133.29 Aligned_cols=139 Identities=18% Similarity=0.274 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
||.++|+.+||||||+++|.+.+. .+..|....+.-..+|+||... +. ..+..- ......+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDTPGEyi-----E~---~~~y~a--Li~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDTPGEYI-----EN---PRFYHA--LIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEECChhhe-----eC---HHHHHH--HHHHHhhCCEEEEE
Confidence 799999999999999999999764 4445666656556666664221 11 122221 24455799999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHH
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR 583 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~ 583 (643)
.|++++.+.- -..+...+ ++|+|-|+||+|+..+....+.++++.+..|+..+|++|+.+| |+++|.++
T Consensus 71 ~dat~~~~~~-pP~fa~~f---------~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 71 QDATEPRSVF-PPGFASMF---------NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred ecCCCCCccC-Cchhhccc---------CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999874411 11111111 7899999999999955555678888999999998999999999 99999998
Q ss_pred HH
Q 006490 584 II 585 (643)
Q Consensus 584 l~ 585 (643)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 371
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=3.1e-15 Score=143.60 Aligned_cols=117 Identities=19% Similarity=0.285 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC-CEEEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA 91 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~il~v~d 91 (643)
+|+|+|++|||||||+++|....+....+++..... ........+..+.+|||||+..+...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887665544322221 1111113467899999999998888888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCC
Q 006490 92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~ 130 (643)
+++. .++.....+|...+.. ..+++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 6777776555444432 2358999999999998764
No 372
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.5e-16 Score=137.75 Aligned_cols=162 Identities=17% Similarity=0.293 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+|++++|+.|.||||+.++.+.+.|...++.+.+....+..+. .+.+++..|||.|++.+.....-++-++.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4679999999999999999999999999888887777666443333 23489999999999999988888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
++||++.+.++.++. +|...+.+.|.++||+++|||.|....... ...+... .+....++++||+.+.|...-
T Consensus 88 imFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k---~k~v~~~---rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARKVK---AKPVSFH---RKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccccc---cccceee---ecccceeEEeecccccccccc
Confidence 999999999999998 599999888889999999999997653211 0001100 111236999999999999999
Q ss_pred HHHHHHHHhCC
Q 006490 168 FYYAQKAVLHP 178 (643)
Q Consensus 168 ~~~i~~~~~~~ 178 (643)
|.++.+.+.-.
T Consensus 161 Fl~LarKl~G~ 171 (216)
T KOG0096|consen 161 FLWLARKLTGD 171 (216)
T ss_pred hHHHhhhhcCC
Confidence 99999987543
No 373
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=5.2e-15 Score=163.01 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~---~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+.|+++|.+|+|||||+++|++.. +...+.++++.+.....+.+++ ..+.+||++|++.+... +...+..+|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~--~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISN--AIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHH--HHhhhccCCE
Confidence 368999999999999999999744 2222334444445455566663 67789999999887665 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc---HHHHHHHHHHhCC---CCcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI---EPPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~---~~~~~~~~~~~~~---~~~~~vSa~ 573 (643)
+++|+|++++.. .+..+.+..+... ++| +++|+||+|+.+.... .+.+.++.+.+++ .+++++||+
T Consensus 77 aILVVDa~~G~~-~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 77 ALLVVDADEGVM-TQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 999999998532 1122222223322 778 9999999999864422 3455566666543 369999999
Q ss_pred cC-CHHHHHHHHHHHHhC
Q 006490 574 SK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~~ 590 (643)
+| |++++++.+.+.+..
T Consensus 150 tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 150 TGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 99 999999999887654
No 374
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=3.1e-15 Score=143.06 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=118.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchh------------h
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG------------K 75 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~------------~ 75 (643)
..+.+.|+++|.||||||||.|.+++.+.......+.+++. +.+.+..+...+.|+||||.-.-.. .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 34568999999999999999999999996655444333333 5666777888999999999753111 1
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHH
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQ 145 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~ 145 (643)
...++..||++++|+|+++....-.. ..+..++++. ++|-|||.||+|........ .......++.+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 22678889999999999874333332 3566666653 89999999999977542110 00111122233
Q ss_pred hhc---------------ccceEEEeCcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490 146 QFR---------------EIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFD 184 (643)
Q Consensus 146 ~~~---------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~ 184 (643)
++. .+..+|.+||++|+||+++-++++..+... ++.|.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g-pW~y~ 278 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG-PWKYP 278 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC-CCCCC
Confidence 322 234589999999999999999999886543 33343
No 375
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=1.5e-15 Score=167.20 Aligned_cols=159 Identities=17% Similarity=0.102 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
+.|+++|++|+|||||+++|++.. +.+. .++.+ .......+...+..+.+|||||++.+...+...+..+|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiT-id~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMT-IDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCce-EEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 469999999999999999999743 2222 11211 111111233445889999999998888777788999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEEeCcccCCChh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMIQVP 165 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 165 (643)
|+|+++....+.. ..+..+... ++| +++|+||+|+.+........+.+..+.+.++. ..+++++||++|.|++
T Consensus 80 VVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 80 VVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 9999874322221 123344444 677 99999999997543221123334444444431 2479999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++++.+...+.
T Consensus 156 eL~~~L~~l~~ 166 (581)
T TIGR00475 156 ELKKELKNLLE 166 (581)
T ss_pred hHHHHHHHHHH
Confidence 99998876543
No 376
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.5e-15 Score=134.59 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=123.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
....+|+++|--|+||||++++|-..+...+ .||.+.. +..+... ...+.+||..|++.+..+ +..|+...++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~yk--n~~f~vWDvGGq~k~R~l--W~~Y~~~t~~ 87 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYK--NISFTVWDVGGQEKLRPL--WKHYFQNTQG 87 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEc--ceEEEEEecCCCcccccc--hhhhccCCcE
Confidence 4568999999999999999999998887665 5777654 4444443 567888999999999888 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC----CcEEeeeccC-
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE----PPIPVSMKSK- 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~vSa~~g- 575 (643)
+|+|+|.+|++.+.+.++.+..+....... +.|+++.+||.|+...-. ..++........+. .+..|+|.+|
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 999999999988888887777776655433 899999999999876322 12222222222221 2678999999
Q ss_pred CHHHHHHHHHHHHhC
Q 006490 576 DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~ 590 (643)
|+.+.++++.+.+..
T Consensus 165 GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKK 179 (181)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999988753
No 377
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=4.7e-15 Score=167.07 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=111.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc--------cHHh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA 494 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~--------~~~~ 494 (643)
.++|+++|.||||||||+|+|++........|.++.+.....+.. +..++.++|++|...+..... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 468999999999999999999987653222243333233333433 445677899999765532100 1223
Q ss_pred h--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 495 L--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 495 ~--~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
+ ..+|++++|+|+++.+. ...+..++.+. ++|+++|+||+|+.+++......+.+.+.+|++ ++++||
T Consensus 81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-VvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNLER---NLYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcchh---hHHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEEEEe
Confidence 2 48999999999998543 23344555554 899999999999876555566778889999986 999999
Q ss_pred ccC-CHHHHHHHHHHHHh
Q 006490 573 KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~ 589 (643)
++| |++++.+.+.+...
T Consensus 151 ~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQA 168 (772)
T ss_pred ecCCCHHHHHHHHHHhhh
Confidence 999 99999999987653
No 378
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=132.03 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=110.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKI 488 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~-~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~ 488 (643)
......|+++|++|||||||+|+|++++. +.++ .|.+.+..++.+.+.+. +.++|.+|- +....+
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 34567899999999999999999999764 4444 34444445666666532 456788872 222222
Q ss_pred hccHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490 489 LSNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565 (643)
Q Consensus 489 ~~~~~~~~---~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 565 (643)
...|++ .-.++++++|+..+.. +...+.+..+... ++|+++|+||+|..............++.++..
T Consensus 97 --i~~YL~~R~~L~~vvlliD~r~~~~-~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 97 --IEEYLEKRANLKGVVLLIDARHPPK-DLDREMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred --HHHHHhhchhheEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 233442 3568899999998755 3334555555555 899999999999998766666667777766654
Q ss_pred ---C--cEEeeeccC-CHHHHHHHHHHHHh
Q 006490 566 ---P--PIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 566 ---~--~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
. ++.+|+.++ |++++...|.+.+.
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 678999999 99999999888764
No 379
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=2.2e-15 Score=166.06 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=106.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc----cHHh--hccCCEEEE
Q 006490 430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEA--LASCDVTIF 503 (643)
Q Consensus 430 G~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~----~~~~--~~~ad~ill 503 (643)
|+||||||||+|+|++........|+++.+.....+..+| ..+.+||++|++.+..... ...+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876443345555444445555543 3567899999876544210 1222 247999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHH
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
|+|+++.+ ....+..++.+. ++|+++|+||+|+.+++......+.+++.++.+ ++++||++| |++++++
T Consensus 79 VvDat~le---r~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIERLKD 148 (591)
T ss_pred EecCCcch---hhHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHHHHHH
Confidence 99998743 223333344333 899999999999976554455678888999986 999999999 9999999
Q ss_pred HHHHHH
Q 006490 583 RIIWAA 588 (643)
Q Consensus 583 ~l~~~~ 588 (643)
.+.+.+
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 380
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=7.4e-15 Score=141.21 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=99.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CCcccceEEEEEE-----------------------cC--C----
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNVVD-----------------------QP--G---- 469 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-----~t~~~~~~~~~v~-----------------------~~--g---- 469 (643)
++|+++|..++|||||+.++.+........ .+....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 368999999999999999997652111000 0111111110000 00 1
Q ss_pred CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~ 549 (643)
....+.+||++|++.+... ....+..+|++++|+|++++.........+..+... . ..|+++|+||+|+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~--~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~----~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMAT--MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G----LKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHH--HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C----CCcEEEEEEchhccCHH
Confidence 0156778999999877554 677788999999999999742111112222222222 1 34799999999997643
Q ss_pred ccH---HHHHHHHHHh--CCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 550 MAV---QDSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 550 ~~~---~~~~~~~~~~--~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
... +..+++.+.+ ...+++++||++| |++++++.+.+.+..|
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 222 2333333332 1225899999999 9999999998876543
No 381
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.4e-16 Score=137.35 Aligned_cols=160 Identities=17% Similarity=0.303 Sum_probs=136.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
-.++++++|+.|.||||++++.+.++|...+.+|++.........+.-+..++-.|||+|++.+..+ ...++-++.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--rdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--RDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--ccccEEeccee
Confidence 3689999999999999999999999999999999998777777777756788889999999988776 66777888999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+++||++...+...+.+|..++.+.+. ++|+|+++||.|..... .....-.+.+..++. ++++||+++ |.+.-
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~-~k~k~v~~~rkknl~-y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK-VKAKPVSFHRKKNLQ-YYEISAKSNYNFERP 160 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc-cccccceeeecccce-eEEeecccccccccc
Confidence 999999999999999999999988876 89999999999976643 223333445556666 899999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|.++++.+.
T Consensus 161 Fl~LarKl~ 169 (216)
T KOG0096|consen 161 FLWLARKLT 169 (216)
T ss_pred hHHHhhhhc
Confidence 999999764
No 382
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.63 E-value=5.2e-15 Score=144.89 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch-------hhhHHhhccCCE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA 85 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~ 85 (643)
+|+|+|+||||||||+|+|++... ..+++.++ .....+.+..++..+.+|||||+.+.. .....+++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 799999999999999999998762 33344322 112233444567889999999975432 123367899999
Q ss_pred EEEEEECCCccc-HHHHHHHH----------------------------------------HHHHHhc------------
Q 006490 86 VVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL------------ 112 (643)
Q Consensus 86 il~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~------------ 112 (643)
+++|+|++++.. .+.+...+ ...++++
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 999999887642 22211100 1111111
Q ss_pred -------------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 113 -------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 113 -------------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
...+|+++|+||+|+... +....++.. .+++++||++|.|++++++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 123699999999998642 112233332 2589999999999999999988764
No 383
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.63 E-value=7.9e-15 Score=162.62 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=110.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (643)
..+...|+|+|.+|+|||||+++|.+..+.....+ |.........+...+....+.+|||+|++.+..+ +..++..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m--r~rg~~~ 318 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM--RSRGANV 318 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH--HHHHHHH
Confidence 34567899999999999999999998877654433 2222222222333334577889999999988877 6778899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHH------HHHhC-CCCcEEe
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV------TQELG-IEPPIPV 570 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~------~~~~~-~~~~~~v 570 (643)
+|++++|+|++++...+.. +.+..+... ++|+|+|+||+|+..... .+..+++ ...++ ..+++++
T Consensus 319 aDiaILVVDA~dGv~~QT~-E~I~~~k~~------~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTI-EAINYIQAA------NVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred CCEEEEEEECcCCCChhhH-HHHHHHHhc------CceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEE
Confidence 9999999999886442222 222233322 799999999999875321 1111122 22233 2369999
Q ss_pred eeccC-CHHHHHHHHHHHH
Q 006490 571 SMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~ 588 (643)
||++| |++++++.|....
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 99999 9999999998765
No 384
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=3.9e-15 Score=137.02 Aligned_cols=152 Identities=21% Similarity=0.182 Sum_probs=101.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchh-------hhHHhhccCCEE
Q 006490 17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADAV 86 (643)
Q Consensus 17 lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~i 86 (643)
|+|++|+|||||+|++++...... .++..... ...... .....+.+|||||+..... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDP-VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECC-eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 589999999999999998764421 22211111 111112 2267899999999876543 333578999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
++|+|+.......... +....... +.|+++|+||+|+...... .................+++++||+++.|+.+
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 9999999887776653 34444444 8999999999998765433 11100011112222334799999999999999
Q ss_pred HHHHHHHH
Q 006490 167 VFYYAQKA 174 (643)
Q Consensus 167 l~~~i~~~ 174 (643)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99988764
No 385
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.63 E-value=2e-15 Score=145.69 Aligned_cols=151 Identities=18% Similarity=0.049 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--C----------------C------C-----CCCCee--eCCcccCCceeEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEK--V----------------P------P-----VHAPTR--LPPDFYPDRVPVT 62 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~--~----------------~------~-----~~~~~~--~~~~~~~~~~~~~ 62 (643)
+|+|+|++|+|||||+++|+...-... . . . ..+.+. ....+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999986542111 0 0 0 001111 2233445677899
Q ss_pred EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--chhhhhh
Q 006490 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM 140 (643)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~~~~~~~ 140 (643)
+|||||+.++...+..+++.+|++|+|+|++.....+.. .....++... ..++|+|+||+|+...... ......+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999987766666788999999999998876432221 2333444441 2457889999998653211 0112233
Q ss_pred hHHHHhhcc-cceEEEeCcccCCChhHH
Q 006490 141 GPIMQQFRE-IETCVECSATTMIQVPDV 167 (643)
Q Consensus 141 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 167 (643)
+.+...++. ..+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 444445542 135899999999999853
No 386
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=3.7e-15 Score=162.82 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC----CeeeCCccc--------------CCceeEEEEeCCCCCcchhh
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA----PTRLPPDFY--------------PDRVPVTIIDTSSSLENKGK 75 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~ 75 (643)
-|+|+|++|+|||||+|+|.+..+....++..+ .+....... .....+.+|||||++.+..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999999887555443111 111111110 11124899999999999888
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc---chh-------h----h---
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL-------E----E--- 138 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~---~~~-------~----~--- 138 (643)
...+++.+|++++|+|+++....+... .+..++.. ++|+++|+||+|+...... ... . .
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 888999999999999998743333322 23344444 7899999999998642100 000 0 0
Q ss_pred -h----hhHHH------------HhhcccceEEEeCcccCCChhHHHHHHHH
Q 006490 139 -V----MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 139 -~----~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 173 (643)
. ...+. ..++...+++++||++|+|+++|+.++..
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 00111 12333357999999999999999987754
No 387
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.63 E-value=3.8e-15 Score=127.51 Aligned_cols=171 Identities=16% Similarity=0.249 Sum_probs=143.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
-.+||.++|++..|||||+-.++++++...+..+.+..+.-+.+.+.|....+.+||..|++++..+ .+-+.+++-++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~--lPiac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM--LPIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc--CceeecCcEEE
Confidence 3589999999999999999999999988777678888888888988888888899999999877665 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC----c--cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP----Y--TMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~----~--~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
+++||.+.+.++..+..|++..+..+.. .+| |+|++|.|+-- + .....+.+.+++.++.+ .+++|+.++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~s 171 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSHS 171 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecccc
Confidence 9999999999999999999998877653 355 56899999632 1 12256777888888887 999999999
Q ss_pred -CHHHHHHHHHHHHhCCCCCCCCcc
Q 006490 576 -DLNNVFSRIIWAAEHPHLNIPETE 599 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~~~~~~~~ 599 (643)
|+.++|.-+...+......+|+..
T Consensus 172 INv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred ccHHHHHHHHHHHHhCCceeccccc
Confidence 999999999988877766666543
No 388
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=1.6e-14 Score=137.17 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~ 488 (643)
.++|+++|.+++|||||+++|++. .....+. + ..+................+.++||+|...+..-
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 378999999999999999999864 1111110 0 0011111222222224556778999998766554
Q ss_pred hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHHhC
Q 006490 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQELG 563 (643)
Q Consensus 489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~~~~~~ 563 (643)
....+..+|++++|+|++.+.. ......+..+... ++| +|+++||+|+..+... .+++..+...++
T Consensus 82 --~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 82 --MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred --HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5778899999999999988644 3344444455444 677 7789999999643322 335566666666
Q ss_pred C----CCcEEeeeccC-CH
Q 006490 564 I----EPPIPVSMKSK-DL 577 (643)
Q Consensus 564 ~----~~~~~vSa~~g-~i 577 (643)
+ .+++++||++| |+
T Consensus 153 ~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 153 FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ccccCCeEEEeeCccccCC
Confidence 5 36999999999 85
No 389
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=6.2e-15 Score=139.95 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=99.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--------C---CCCCC---CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV--------P---EKVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG 74 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--------~---~~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (643)
++++|+++|++++|||||+++|+...- . .+..+ ..+.+. ....+..++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 357899999999999999999986410 0 00000 011111 2233445678899999999988877
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc---
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE--- 149 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~--- 149 (643)
.....+..+|++++|+|+....... ....+..+... ++| +|+|+||+|+....... ...+.+..+...++.
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQ--TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7788899999999999987653322 22456666666 676 78999999986432210 112233444444432
Q ss_pred cceEEEeCcccCCChh
Q 006490 150 IETCVECSATTMIQVP 165 (643)
Q Consensus 150 ~~~~~~~Sa~~~~gi~ 165 (643)
..+++++||.+|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 1369999999999864
No 390
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=2.9e-15 Score=165.16 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=103.6
Q ss_pred cCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh------hHHhh--ccCCEEEEE
Q 006490 19 GDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVVLT 89 (643)
Q Consensus 19 G~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~il~v 89 (643)
|+||||||||+|+|++..+ +.++|+++.. .....+..++..+++|||||+.++... ...++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~-~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVE-KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEE-EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999875 4445553221 122334445677999999998865432 22333 479999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
+|.++.+.. . ++..++.+. ++|+++|+||+|+.+.... . ...+.+.+.++ .+++++||++|.|++++++
T Consensus 80 vDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg--~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 80 VDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLG--VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred ecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence 998874322 1 244444444 7999999999998654433 2 23466677776 3799999999999999999
Q ss_pred HHHHHH
Q 006490 170 YAQKAV 175 (643)
Q Consensus 170 ~i~~~~ 175 (643)
.+.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 391
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.61 E-value=1.9e-14 Score=161.14 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=108.7
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
..++..|+|+|..|+|||||+++|.+..+.....+.++.+.....+.+.+ ..+.+|||+|++.|..+ +...+..+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m--~~rga~~aD 362 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAM--RARGAQVTD 362 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhH--HHhhhhhCC
Confidence 34567899999999999999999998776544433333333334455552 56778999999988777 567789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHH---HHHHHhC-CCCcEEeeec
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSA---RVTQELG-IEPPIPVSMK 573 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~---~~~~~~~-~~~~~~vSa~ 573 (643)
++|+|+|++++..-+. ...+..+... ++|+|+++||+|+..... ...... .+...++ ..+++++||+
T Consensus 363 iaILVVdAddGv~~qT-~e~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 363 IVVLVVAADDGVMPQT-IEAINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEEEECCCCCCHhH-HHHHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 9999999998543222 2222333322 899999999999965221 111111 1122333 2359999999
Q ss_pred cC-CHHHHHHHHHHHH
Q 006490 574 SK-DLNNVFSRIIWAA 588 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~ 588 (643)
+| |++++++.|....
T Consensus 436 tG~GI~eLle~I~~~~ 451 (787)
T PRK05306 436 TGEGIDELLEAILLQA 451 (787)
T ss_pred CCCCchHHHHhhhhhh
Confidence 99 9999999987643
No 392
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=1.6e-14 Score=132.99 Aligned_cols=152 Identities=25% Similarity=0.241 Sum_probs=101.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHhhccCCEE
Q 006490 428 LFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCDVT 501 (643)
Q Consensus 428 ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ad~i 501 (643)
|+|++|+|||||+|++++........ +++............ ....+.+||++|....... ......+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999976653332 322222223333333 2556788999996544321 1134577899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH---HHHHHHhCCCCcEEeeeccC-CH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++|+|++++.+..... +....... +.|+++|+||+|+.......... ..........+++++||+++ |+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 9999999986655443 33333333 89999999999998754332221 11222233346999999999 99
Q ss_pred HHHHHHHHHH
Q 006490 578 NNVFSRIIWA 587 (643)
Q Consensus 578 ~~l~~~l~~~ 587 (643)
+++++++.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 393
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.60 E-value=4.7e-15 Score=159.03 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------C-----------------CCCCee--eCCcccCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP------------P-----------------VHAPTR--LPPDFYPD 57 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~------------~-----------------~~~~~~--~~~~~~~~ 57 (643)
.++.++|+++|++++|||||+++|+...-..... + ..+.|. ....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4667999999999999999999998543111000 0 011111 22345567
Q ss_pred ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--ch
Q 006490 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TS 135 (643)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~~ 135 (643)
++.+.+|||||++++.......+..+|++|+|+|+++..+.......++..+.... ..|+++|+||+|+...... ..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHH
Confidence 88999999999988776666678899999999999873222222222444444442 2469999999999753211 01
Q ss_pred hhhhhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490 136 LEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (643)
Q Consensus 136 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 168 (643)
..+.+..+...++. ..+++++||++|.|++++.
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12233444444442 1368999999999998754
No 394
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.60 E-value=1.4e-14 Score=134.96 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHHhhc--
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEELK-- 81 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~-- 81 (643)
.|+++|++|||||||+|++++..+.....++.+.+.....+..++ .+.+|||||+... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 389999999999999999997665444444333333211222222 8999999996542 222233343
Q ss_pred -cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 82 -~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
..+++++++|.+...+.... ....++... +.|+++|+||+|+.................+......+++++||++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 35789999998766433322 245555555 6899999999998643221011112222222112224689999999
Q ss_pred CCChhHHHHHHHHH
Q 006490 161 MIQVPDVFYYAQKA 174 (643)
Q Consensus 161 ~~gi~~l~~~i~~~ 174 (643)
+.|+.++++++.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988764
No 395
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=131.24 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHHhh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNEEL 80 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 80 (643)
...-||++|++|||||||+|+|+++.-....+.+++.|+....+..++ .+.++|.||..-. ......|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 445799999999999999999999773333444455776555555544 3899999997621 12333555
Q ss_pred cc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc----cceE
Q 006490 81 KR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE----IETC 153 (643)
Q Consensus 81 ~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 153 (643)
+. -.++++++|+..+.. ..+.+.++++... ++|+++|.||+|....... ...+..+++.+.. ...+
T Consensus 102 ~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPK--DLDREMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred hhchhheEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCccceE
Confidence 44 467888899655544 3344588888887 8999999999998875332 2222333333321 1127
Q ss_pred EEeCcccCCChhHHHHHHHHHHh
Q 006490 154 VECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+..|+..+.|++++...|...+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 88999999999999888776543
No 396
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=1.1e-14 Score=140.59 Aligned_cols=145 Identities=22% Similarity=0.238 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcCCCcEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPGGNKK 473 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~g~~~~ 473 (643)
+|+|+|.+|+|||||+++|+.....+... ..++.+.....+.. ....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence 58999999999999999998755443310 11111122223333 3446
Q ss_pred EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCccc--
Q 006490 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTM-- 550 (643)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~-- 550 (643)
+.++||+|++.+... ....+..+|++++|+|++++.. .........+... + .++|+|+||+|+.....
T Consensus 79 ~~liDTpG~~~~~~~--~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRN--MVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL------GIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEEEECCcHHHHHHH--HHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc------CCCcEEEEEEchhcccCCHHH
Confidence 778999998776543 4567899999999999998643 2222222222222 3 45788999999874221
Q ss_pred ---cHHHHHHHHHHhCCC--CcEEeeeccC-CHHHH
Q 006490 551 ---AVQDSARVTQELGIE--PPIPVSMKSK-DLNNV 580 (643)
Q Consensus 551 ---~~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~l 580 (643)
.....+++.+.+++. +++++||++| |+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 134555666777754 4899999999 98754
No 397
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=3.2e-14 Score=151.96 Aligned_cols=152 Identities=21% Similarity=0.262 Sum_probs=112.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhhhccHHhh--
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKEAL-- 495 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~~~~~~~~-- 495 (643)
.+|+++|.||||||||+|+|+|.......-|..+.+...-.....| ..+.++|.+|...+ +.+ +.+++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~V--ar~~ll~ 79 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKV--ARDFLLE 79 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHH--HHHHHhc
Confidence 4699999999999999999999765444446544444444444442 23566777773322 223 34444
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
.++|+++-|+|+++- +.-...-.++.+. ++|++++.|++|..+++...-..+.+.+.+|++ ++++||++|
T Consensus 80 ~~~D~ivnVvDAtnL---eRnLyltlQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA~~g 149 (653)
T COG0370 80 GKPDLIVNVVDATNL---ERNLYLTLQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVAKRG 149 (653)
T ss_pred CCCCEEEEEcccchH---HHHHHHHHHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEeecC
Confidence 468999999999985 3333344445555 899999999999988777778889999999998 999999999
Q ss_pred -CHHHHHHHHHHHHh
Q 006490 576 -DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 -~i~~l~~~l~~~~~ 589 (643)
|++++.+.+.+...
T Consensus 150 ~G~~~l~~~i~~~~~ 164 (653)
T COG0370 150 EGLEELKRAIIELAE 164 (653)
T ss_pred CCHHHHHHHHHHhcc
Confidence 99999999876443
No 398
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.59 E-value=3.1e-15 Score=128.06 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
-.+||.++|++.+|||||.-.++++.+.+.+..+.+... ....+.+..+.+.|||.+|++++.++.+.+..++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 358999999999999999999999887655444344333 333444567889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc---chhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
+||.+.+.++..+.+ |.+..+..+...--|+||+|-|+--.-.. .......+.+++-... +.+.||+.++.||+
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccccHH
Confidence 999999999999985 99999887544445689999996433211 0222333445555543 68999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
.+|..+..++.
T Consensus 176 KIFK~vlAklF 186 (205)
T KOG1673|consen 176 KIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHh
Confidence 99998877764
No 399
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.58 E-value=2.4e-14 Score=156.50 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=99.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC----------------CcEEEEEEecCCchhhhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------------GNKKTLILQEIPEEGVKK 487 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g----------------~~~~~~i~d~~g~~~~~~ 487 (643)
.-|+|+|++|+|||||+|+|.+..+......+++.+.....+..+. ....+.+|||+|++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3699999999999999999999876543332222211111111110 011367899999998888
Q ss_pred hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--------------cH-
Q 006490 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--------------AV- 552 (643)
Q Consensus 488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--------------~~- 552 (643)
+ +..++..+|++++|+|++++.+.+. ...+..+... +.|+++|+||+|+..... ..
T Consensus 85 l--~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 85 L--RKRGGALADLAILIVDINEGFKPQT-QEALNILRMY------KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred H--HHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHHHHc------CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 7 6678899999999999998433222 1222223322 789999999999964210 00
Q ss_pred --HH--------HHHHHHH-------------hCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490 553 --QD--------SARVTQE-------------LGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 553 --~~--------~~~~~~~-------------~~~~~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
.. ..++.+. .+..+++++||++| |++++++++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 0111111 12236899999999 9999999887543
No 400
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1e-14 Score=127.86 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=122.7
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCC---CC--CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPF---SE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~---~~--~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~ 494 (643)
.+..+-|+|+|.-|+|||||+.++-...- .. .+.-|++.....-.+++. .....+||-.|++...++ +..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSl--w~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSL--WKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHH--HHHH
Confidence 34567899999999999999998764321 11 111245555556666665 456778999999999999 9999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---HHhCCC--CcEE
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---QELGIE--PPIP 569 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~ 569 (643)
+..||++++++|+++++.|+........+....... +.|+++.+||.|+.+.... .+++... ...+-+ ++.+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le--g~p~L~lankqd~q~~~~~-~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE--GAPVLVLANKQDLQNAMEA-AELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc--CCchhhhcchhhhhhhhhH-HHHHHHhhhhhhcCCccCcccc
Confidence 999999999999999988888877776665544333 8999999999998773322 2222222 222222 5899
Q ss_pred eeeccC-CHHHHHHHHHHHHhCC
Q 006490 570 VSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
|||.+| ||++-.+++.+.....
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 999999 9999999999988644
No 401
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.58 E-value=7.8e-14 Score=119.29 Aligned_cols=167 Identities=18% Similarity=0.186 Sum_probs=125.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcc-hhhhHHhhccC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN-KGKLNEELKRA 83 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~-~~~~~~~~~~a 83 (643)
.-+..||+++|-.+||||+++..|+..+.+.. .|+....+....+.+.+ .-.+.++||.|...+ ..+-..++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34568999999999999999999998775443 23332233332232222 334899999999877 34445788889
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
|++++|||..+++||+.+.. +.++|.+.. ..+||++.+||+|+.+...+ ..+....|++.-. ...++++|.+.
T Consensus 86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEk--vkl~eVta~dR 160 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREK--VKLWEVTAMDR 160 (198)
T ss_pred ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhh--eeEEEEEeccc
Confidence 99999999999999999873 777776542 36899999999999876655 4455667776654 36899999999
Q ss_pred CChhHHHHHHHHHHhCCCC
Q 006490 162 IQVPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~ 180 (643)
..+-+.|..+...+..+..
T Consensus 161 ~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred hhhhhHHHHHHHhccCCcc
Confidence 9999999999988876654
No 402
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.58 E-value=2e-14 Score=141.53 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=70.1
Q ss_pred CcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc
Q 006490 70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (643)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (643)
+++..+.+.+++++|.+++|||++++. +++.+. +|+..+... ++|+++|+||+|+...... ..+..+.+. ..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence 456667778999999999999999887 888887 588877654 8999999999999654322 222333332 333
Q ss_pred ccceEEEeCcccCCChhHHHH
Q 006490 149 EIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 149 ~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
.+++++||++|.|++++|+
T Consensus 98 --~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 98 --YQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred --CeEEEEecCCchhHHHHHh
Confidence 3689999999999998886
No 403
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.58 E-value=3.3e-14 Score=156.84 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCcch
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLENK 73 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 73 (643)
+|+|+|+.++|||||+.+|+... +.. ..... .+.+. ....+ +..++.+++|||||+.++.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 59999999999999999998642 111 00000 00110 11111 3446889999999999998
Q ss_pred hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ce
Q 006490 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET 152 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (643)
..+..+++.+|++|+|+|+++....+... .|... ... ++|+++|+||+|+.... .+....++.+.++.. ..
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~-~~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLA-LEN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHH-HHC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCCcce
Confidence 88999999999999999998876655543 24332 333 78999999999986432 222233444444311 14
Q ss_pred EEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 153 CVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
++++||++|.|++++++++.+.+..+.
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 899999999999999999998876553
No 404
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.9e-15 Score=130.52 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=121.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC----CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK 81 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 81 (643)
.+..+.|+|+|..|+|||||+.++-... +..- ..++.+- ..+.+...+.++.+||.+|++...+++..+|.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence 4567889999999999999998775432 2111 1111111 23344455778999999999999999999999
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cceEEEeCcc
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSAT 159 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 159 (643)
.+|++++|||+++++.++...+.+-..+.. .-.+.|+++.+||-|+.+.-.....+..... ....+. ..++.+|||.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSAL 170 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhh
Confidence 999999999999999998887755555533 2348999999999999765332111111111 222322 2368999999
Q ss_pred cCCChhHHHHHHHHHHhCC
Q 006490 160 TMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~ 178 (643)
+|+||++..+|+.+.+...
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999987654
No 405
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.57 E-value=1.2e-14 Score=150.61 Aligned_cols=190 Identities=20% Similarity=0.245 Sum_probs=133.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|+.|||||||+-+|+..++...-++-... +.+-.--++ ......+.|+...+..... ....+++||+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPadvtP-e~vpt~ivD~ss~~~~~~~--l~~EirkA~v 82 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPADVTP-ENVPTSIVDTSSDSDDRLC--LRKEIRKADV 82 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCccCc-CcCceEEEecccccchhHH--HHHHHhhcCE
Confidence 45689999999999999999999999987655431111 111111112 2333556777654332222 3678899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHh-CCCCcEEeeeccC-
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-GIEPPIPVSMKSK- 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~-~~~~~~~vSa~~g- 575 (643)
+++||+++++.+.+.+. .|+..+++..... .++|||+|+||+|+...... +.....+..++ .+..+++|||++-
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 99999999999988876 5999998776321 28999999999999875443 22233344443 3446899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhh
Q 006490 576 DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSL 615 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 615 (643)
++.++|....+++.+|....-+.+......++..++.|.+
T Consensus 162 n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIF 201 (625)
T KOG1707|consen 162 NVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIF 201 (625)
T ss_pred hhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHH
Confidence 9999999999999888877666665544456666666555
No 406
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=1.1e-14 Score=164.87 Aligned_cols=230 Identities=13% Similarity=0.042 Sum_probs=137.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCC-----------CCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPE-----KVPPV-----------HAPTR--LPPDFYPDRVPVTIIDTSSSLENKG 74 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-----~~~~~-----------~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (643)
-+|+|+|++|+|||||+|+|+...-.. ...+. .+.+. ....+..++..+++|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 369999999999999999997532111 11110 01111 2233445688999999999998887
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--ce
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ET 152 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~ 152 (643)
....+++.+|++|+|+|+++....+.. .++..++.. ++|+++|+||+|+.... ....++.+...++.. ..
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~~~~~~ 162 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGANAVPI 162 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceeE
Confidence 888999999999999999876555433 355566666 79999999999987642 334455666655532 13
Q ss_pred EEEeCcccCCChhHHHHHHHHHH-hCCCCCCCcccccc--------chHHHHHHHHhhhhhcCCCC-----CCCCChHHH
Q 006490 153 CVECSATTMIQVPDVFYYAQKAV-LHPTAPLFDHDEQT--------LKPRCVRALKRIFIICDHDM-----DGALNDAEL 218 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el 218 (643)
.+++|+.++ +..+++.+.... .++........... ......+.++.+....|..+ ...+..+++
T Consensus 163 ~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l 240 (689)
T TIGR00484 163 QLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEI 240 (689)
T ss_pred EeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHH
Confidence 578888766 322222222111 11100000000000 11112222333332222222 123444554
Q ss_pred HHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 219 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
...... +++.++...+++.+++.+..+.|+|.+.
T Consensus 241 ~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~ 284 (689)
T TIGR00484 241 KNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDV 284 (689)
T ss_pred HHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhc
Confidence 322222 3677889999999999999999998754
No 407
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=3.5e-14 Score=137.83 Aligned_cols=152 Identities=21% Similarity=0.173 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC------------CCCee------eC--------------------Cccc
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPV------------HAPTR------LP--------------------PDFY 55 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~------------~~~~~------~~--------------------~~~~ 55 (643)
||+++|+.++|||||+++|+.+.+....... .+.+. .. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976553321100 00000 00 0111
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhc--cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~ 133 (643)
..+..++++||||.+.+.......+. .+|++++|+|++....-. ...++..+... ++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~--d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~- 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM--TKEHLGLALAL--NIPVFVVVTKIDLAPANI- 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCEEEEEECccccCHHH-
Confidence 23567999999999887666555554 689999999987654433 33577777776 799999999999865322
Q ss_pred chhhhhhhHHHHhh---------------------------cccceEEEeCcccCCChhHHHHHHH
Q 006490 134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQ 172 (643)
Q Consensus 134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~gi~~l~~~i~ 172 (643)
.......+.+.+ +...+++.+||.+|.|+++|...+.
T Consensus 156 --~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 --LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred --HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222233333222 2234789999999999999887653
No 408
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=1e-13 Score=129.04 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----------hhhhhccHHh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKKILSNKEA 494 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----------~~~~~~~~~~ 494 (643)
+|+++|++|||||||+|.+++........++.........+...+ ...++|++|... +... ...+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~--~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKL--IEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHH--HHHH
Confidence 389999999999999999997655544444443334444444442 677899998322 2222 2223
Q ss_pred h---ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---H-HhCCCCc
Q 006490 495 L---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---Q-ELGIEPP 567 (643)
Q Consensus 495 ~---~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~-~~~~~~~ 567 (643)
+ ..++++++++|.++..+... ......+... +.|+++|+||+|+............+. + .....++
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI 148 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence 3 35688999999987633221 2222333333 689999999999965433322222222 2 2344468
Q ss_pred EEeeeccC-CHHHHHHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~ 587 (643)
+++||+++ |+.++++.|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 99999999 999999998864
No 409
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.57 E-value=6.3e-14 Score=154.66 Aligned_cols=159 Identities=15% Similarity=0.189 Sum_probs=111.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCC------CcccceEE--EEEEc---CCCcEEEEEEecCCchhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSE-------NYAP------TTGEQYAV--NVVDQ---PGGNKKTLILQEIPEEGV 485 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~-------~~~~------t~~~~~~~--~~v~~---~g~~~~~~i~d~~g~~~~ 485 (643)
-+|+|+|..++|||||+.+|+...-.. .+.. +.+..... ..+.+ +|....+.+|||+|+..+
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 479999999999999999998632111 0000 11111111 11111 344677889999999888
Q ss_pred hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC
Q 006490 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 565 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 565 (643)
... +..++..||++|+|+|++++...+....|.... .. ++|+++|+||+|+.... .....+++.+.+++.
T Consensus 88 ~~~--v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~~------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 88 SYE--VSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGID 157 (600)
T ss_pred HHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCCC
Confidence 765 678899999999999999986666555554332 22 78999999999986532 223345566666664
Q ss_pred --CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 566 --PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 566 --~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
.++++||++| |+++++++|.+.+..|.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 4899999999 99999999999876553
No 410
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.1e-14 Score=119.18 Aligned_cols=160 Identities=9% Similarity=0.071 Sum_probs=122.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.++++|+.+|-.++||||++..|..+..+...|++... ...+...++.|++||.+|+......|..|+.+..++|||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn---vetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN---VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccccccccee---EEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 35789999999999999999999988876666653222 224567789999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccc--hhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNAT--SLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|..++...++...++...+... -.+.|+++.+||-|+....... ...-+++.+..+. -.+.++||.+|.|+.|
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~---W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN---WYVQPSCALSGDGLKE 168 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc---cEeeccccccchhHHH
Confidence 99999999999888777777432 1378999999999998764330 1111112211111 1368899999999999
Q ss_pred HHHHHHHHH
Q 006490 167 VFYYAQKAV 175 (643)
Q Consensus 167 l~~~i~~~~ 175 (643)
-|.++...+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999887653
No 411
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.57 E-value=1.9e-16 Score=139.98 Aligned_cols=167 Identities=17% Similarity=0.290 Sum_probs=141.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-cEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~-~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
.+-+|+.|+|.-++||||++.+++...|...|..|++.++..++..++.. ..+..+||.+|++++..+ +.-+++.|+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--trVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--TRVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--EEEEecCCc
Confidence 45689999999999999999999999999888889998888877776632 234558999999999888 778999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
+.++|||++...+|+....|.+++..... +.+...|+|+.+||||..+.... .....++++..|+..++++|+|.+
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998864432 22336789999999998764433 477889999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
+++++.+.+++...
T Consensus 181 ni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 181 NIPEAQRELVEKIL 194 (229)
T ss_pred ChhHHHHHHHHHHH
Confidence 99999999999764
No 412
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.57 E-value=9.6e-14 Score=135.93 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh----hh-hccHHhhccC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALASC 498 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~~-~~~~~~~~~a 498 (643)
+|+++|.||||||||+|+|.+..... .++.|+.. ...-.+... ...+.+||++|..... .+ .+....++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~-~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT-CVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc-ceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 78999999999999999999876332 22223322 223333333 3467789999964322 11 1135678999
Q ss_pred CEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------HH-Hh----------
Q 006490 499 DVTIFVYDSSDEYS-WKRTKELLVE----------------------------------------VA-RL---------- 526 (643)
Q Consensus 499 d~illv~D~s~~~s-~~~~~~~~~~----------------------------------------i~-~~---------- 526 (643)
|++++|+|++++.. .+.+.+.+.. +. ++
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999987642 2222222210 00 00
Q ss_pred -----------cCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 527 -----------GEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 527 -----------~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
......-+|+++|+||+|+... ++...+++. .+++++||++| |++++++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~----~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI----EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCH----HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0000114699999999999763 333344432 34899999999 99999999998653
No 413
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.56 E-value=5e-14 Score=135.23 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC-CEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF 503 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a-d~ill 503 (643)
+|+++|++|||||||+++|.++.+..++.++ ...........++....+.+||++|+..+... ...+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~--~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK--LLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH--HHHHHhccCCEEEE
Confidence 5899999999999999999998876655333 22222222222224567889999999888765 67788888 99999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490 504 VYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (643)
Q Consensus 504 v~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~ 548 (643)
|+|+++. .++.....++..+.........++|+++|+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999987 66777777766554322111117999999999998753
No 414
>PRK10218 GTP-binding protein; Provisional
Probab=99.56 E-value=6.2e-14 Score=153.80 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC------------CCCCCee--eCCcccCCceeEEEEeCCCCCcchhhh
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVP------------PVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKL 76 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 76 (643)
-+|+|+|+.++|||||+++|+.. .+..... ...+.+. ....+.++++.+++|||||+.++...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 46999999999999999999973 2322111 0011111 223445678999999999999999999
Q ss_pred HHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh---cc----
Q 006490 77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---RE---- 149 (643)
Q Consensus 77 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~---- 149 (643)
..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. ..+.++...+ +.
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~~--gip~IVviNKiD~~~a~~~----~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFAY--GLKPIVVINKVDRPGARPD----WVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHH--HHHHHHHHHc--CCCEEEEEECcCCCCCchh----HHHHHHHHHHhccCccccc
Confidence 999999999999999887543332 2355555555 7899999999998754322 2222232322 11
Q ss_pred -cceEEEeCcccCC----------ChhHHHHHHHHHHhCCC
Q 006490 150 -IETCVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 150 -~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~ 179 (643)
-.+++.+||.+|. |+..|++.+...+..+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 1358999999998 58899999888877654
No 415
>PRK00007 elongation factor G; Reviewed
Probab=99.55 E-value=1.2e-14 Score=164.20 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=141.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCC------------CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEK----VPP------------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG 74 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~----~~~------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (643)
.+|+|+|++|+|||||+++|+...-... ... ..+.+. ....+.+.+..++++||||..++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 4699999999999999999974221000 000 001111 2223445688999999999988777
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--ce
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ET 152 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~ 152 (643)
....+++.+|++|+|+|+......+. ...+..+.+. ++|+|+++||+|+... .....++.+...++.. ..
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~~--~~p~iv~vNK~D~~~~----~~~~~~~~i~~~l~~~~~~~ 162 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADKY--KVPRIAFVNKMDRTGA----DFYRVVEQIKDRLGANPVPI 162 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCeeeE
Confidence 77789999999999999876644443 3466667766 7899999999998864 2445566777777642 24
Q ss_pred EEEeCcccC-CChhHHHHHHHHHHh-CCCCCCCcc------ccccchHHHHHHHHhhhhhcCCCC-----CCCCChHHHH
Q 006490 153 CVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFDH------DEQTLKPRCVRALKRIFIICDHDM-----DGALNDAELN 219 (643)
Q Consensus 153 ~~~~Sa~~~-~gi~~l~~~i~~~~~-~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~-----~~~l~~~el~ 219 (643)
.+++|+..+ .|+-+++........ ......+.. ..........+.++.+....|..+ +..+..+++.
T Consensus 163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~ 242 (693)
T PRK00007 163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242 (693)
T ss_pred EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence 578999877 555555532221110 000000000 000011112222333322222222 2344555554
Q ss_pred HHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 220 EFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 220 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
....+ +++.++...+++.+++.+..++|+|.+.
T Consensus 243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~ 285 (693)
T PRK00007 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV 285 (693)
T ss_pred HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhc
Confidence 33221 4778899999999999999999998754
No 416
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.55 E-value=4.3e-14 Score=137.17 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCCCC-CeeeCCcc------------cCCceeEEEEeCCCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPVHA-PTRLPPDF------------YPDRVPVTIIDTSSS 69 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----------~~~~~-~~~~~~~~------------~~~~~~~~i~Dt~G~ 69 (643)
+|+|+|++|+|||||+++|+........ ..... .......+ ....+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5999999999999999999976543221 00000 00000111 234578999999999
Q ss_pred CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
.++......++..+|++|+|+|++...+.... .++..+... ++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccC
Confidence 98888888999999999999999877665432 355555544 69999999999975
No 417
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=5.5e-14 Score=154.49 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCCCCCC------------CCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES--VPEKVPP------------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
+|+|+|+.++|||||+++|+... +...... ..+.+. ....+.++++.+++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 59999999999999999998642 2211100 000111 2233456789999999999999988889
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-----cce
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IET 152 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 152 (643)
.+++.+|++|+|+|+......+ ...|+..+... ++|+|+|+||+|+...+.. .....+..+...++. ..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q--T~~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ--TRFVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH--HHHHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccCc
Confidence 9999999999999987643222 23477777666 7899999999998654321 111222222222211 136
Q ss_pred EEEeCcccCC----------ChhHHHHHHHHHHhCCC
Q 006490 153 CVECSATTMI----------QVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 153 ~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~ 179 (643)
++++||++|. |+..+|+.+.+.+..+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 8999999995 89999999999887654
No 418
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=1.3e-13 Score=152.32 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS---ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
-|+++|.+++|||||+++|++.... ......++.+.....+..+ ....+.+||++|++.+... +...+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~--m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSN--MLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHH--HHHHhhcCCEE
Confidence 4899999999999999999975321 1221122222223334444 2345678999999887554 56778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc---HHHHHHHHHHhCC--CCcEEeeeccC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI--EPPIPVSMKSK 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~~vSa~~g 575 (643)
++|+|++++.. .+..+.+..+... ++| +++|+||+|+.++... .++...+....++ .+++++||++|
T Consensus 79 lLVVda~eg~~-~qT~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 79 LLVVACDDGVM-AQTREHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 99999998533 2223333333332 566 5799999999764332 2344444455554 36999999999
Q ss_pred -CHHHHHHHHHHHHh
Q 006490 576 -DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 -~i~~l~~~l~~~~~ 589 (643)
|++++++.|.+...
T Consensus 152 ~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 152 RGIDALREHLLQLPE 166 (614)
T ss_pred CCCHHHHHHHHHhhc
Confidence 99999999987654
No 419
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.54 E-value=9.8e-14 Score=132.76 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC--CCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHH-----hhcc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VP--PVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR 82 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 82 (643)
.+||+|+|++|||||||+|+|++...... .. +....+.....+. .....+.+|||||+......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 37899999999999999999998664322 11 1111111111111 12346899999998654332322 3677
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc------hhhhhhhHHHH----hhc----
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT------SLEEVMGPIMQ----QFR---- 148 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~------~~~~~~~~~~~----~~~---- 148 (643)
+|++++|.| ++ +......|++.++.. ++|+++|+||+|+....... ..++.++.+.+ .++
T Consensus 81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899999854 32 344444688888877 78999999999985321100 01122222222 221
Q ss_pred ccceEEEeCcc--cCCChhHHHHHHHHHHhC
Q 006490 149 EIETCVECSAT--TMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 149 ~~~~~~~~Sa~--~~~gi~~l~~~i~~~~~~ 177 (643)
...+++.+|+. .+.|+..+.+.++..+..
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 22368999998 578999999988887653
No 420
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.54 E-value=3.4e-14 Score=152.38 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=103.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--eCCcccCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPP-----------------VHAPTR--LPPDFYPD 57 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~ 57 (643)
.++.++|+++|+.++|||||+++|+... +... ..+ ..+.+. ....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 5677999999999999999999998632 1100 000 001111 22334566
Q ss_pred ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHH-HHHHHHHhcCCCCcEEEEEecccCCCCCcc--c
Q 006490 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS-YWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T 134 (643)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~-~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--~ 134 (643)
++.+.||||||++++.......+..+|++|+|+|+++..+...... .++...+.. ...|+|+|+||+|+...... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 7899999999998876666677889999999999988743311111 122233333 23579999999999742221 0
Q ss_pred hhhhhhhHHHHhhcc---cceEEEeCcccCCChhHHHH
Q 006490 135 SLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~ 169 (643)
.....+..+.+.++. ..+++++||++|.|+.+++.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 112334445554441 23689999999999987553
No 421
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=1.2e-13 Score=134.01 Aligned_cols=151 Identities=21% Similarity=0.258 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----------------Ccc-----cceE-----------------EEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAP----------------TTG-----EQYA-----------------VNVVD 466 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~----------------t~~-----~~~~-----------------~~~v~ 466 (643)
||+++|..++|||||+++|..+.+...... |.. .++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997655321110 000 0000 01111
Q ss_pred cCCCcEEEEEEecCCchhhhhhhccHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 006490 467 QPGGNKKTLILQEIPEEGVKKILSNKEALA--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 544 (643)
Q Consensus 467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~D 544 (643)
. ....+.++|++|++.+... +...+. .+|++++|+|+.++.. .....++..+... ++|+++|+||+|
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~--~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~------~ip~ivvvNK~D 149 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKT--TLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL------NIPVFVVVTKID 149 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHH--HHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEECcc
Confidence 1 2345678999999877553 344443 7999999999988754 4445555555554 899999999999
Q ss_pred CCCccccHHHHHHHHHHhC----------------------------CCCcEEeeeccC-CHHHHHHHHHH
Q 006490 545 LKPYTMAVQDSARVTQELG----------------------------IEPPIPVSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vSa~~g-~i~~l~~~l~~ 586 (643)
+.+.....+...++.+.+. ..|++.+||.+| |++++...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 8765444444444444433 237899999999 99999887754
No 422
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=9e-14 Score=134.12 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=111.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHhhcc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALAS 497 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~~~~ 497 (643)
...|-+||-||+|||||+|+|...+-.....+-|+..-.+-++..+ ....+.+-|.+|.-+-..+ .+-.+.+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc-ccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 4568899999999999999999876554444422221122223333 3333555666662111111 113567899
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 498 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 498 ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
|+.+++|+|++.+ .-++++..+..++..+..... ++|.++|+||+|+.+.+ ...+.++++.+.-+.++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~-~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA-DRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc-cCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999988 778888777777766554322 78999999999996422 23357888888877799999999
Q ss_pred C-CHHHHHHHHHH
Q 006490 575 K-DLNNVFSRIIW 586 (643)
Q Consensus 575 g-~i~~l~~~l~~ 586 (643)
+ |+.++++.+.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9 99999888754
No 423
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.53 E-value=8.5e-14 Score=153.84 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---CCCCC-CCCCCCee-eC-Ccc-cCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATES---VPEKV-PPVHAPTR-LP-PDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~---~~~~~-~~~~~~~~-~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
+-|+++|+.++|||||+++|++.. +.+.. .+ .|. .. ..+ ..++..+.+|||||++.+...+...+..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG---iTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG---MTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCC---ceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 358999999999999999999743 22221 11 111 11 111 1245678999999999887777788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQ 163 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 163 (643)
+++|+|++.....+.. +.+..++.. ++| +|+|+||+|+.+........+.+..+....+ ...+++++||++|.|
T Consensus 78 ~lLVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 78 ALLVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999998874332222 234445554 556 5799999999753221011222333333322 124689999999999
Q ss_pred hhHHHHHHHHHH
Q 006490 164 VPDVFYYAQKAV 175 (643)
Q Consensus 164 i~~l~~~i~~~~ 175 (643)
+++|++.+....
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999887643
No 424
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=5.8e-14 Score=149.11 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=103.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC---CCC-CCCC---C----------------CeeeCCcccC------Ccee
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP---EKV-PPVH---A----------------PTRLPPDFYP------DRVP 60 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~---~~~-~~~~---~----------------~~~~~~~~~~------~~~~ 60 (643)
+++++|+++|.+++|||||+++|.+.... +.. .+.. + ..+.....+. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56789999999999999999999764211 000 0000 0 0000000011 2467
Q ss_pred EEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh
Q 006490 61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM 140 (643)
Q Consensus 61 ~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~ 140 (643)
+++|||||++++...+...+..+|++++|+|+++........ +.+..+...+ ..|+++|+||+|+..........+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999988877778888899999999998643111111 1233344432 35799999999987532210011222
Q ss_pred hHHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 141 GPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 141 ~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
..+.... ....+++++||++|.|++++++++...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2222221 11236899999999999999999987654
No 425
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.53 E-value=3.5e-13 Score=124.06 Aligned_cols=87 Identities=9% Similarity=0.024 Sum_probs=56.4
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
..++++|++++|+|+.++..... ..+...+.....++|+++|.||+|+..... ....+..+.+.+. . ..+.+|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~-~-~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYP-T-IAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCc-E-EEEEee
Confidence 56789999999999988743221 134555554434699999999999964211 1122222322222 1 247899
Q ss_pred cccCCChhHHHHHH
Q 006490 158 ATTMIQVPDVFYYA 171 (643)
Q Consensus 158 a~~~~gi~~l~~~i 171 (643)
|+++.|++++++.+
T Consensus 77 a~~~~~~~~L~~~l 90 (157)
T cd01858 77 INNPFGKGSLIQLL 90 (157)
T ss_pred ccccccHHHHHHHH
Confidence 99999999887754
No 426
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.3e-13 Score=114.73 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=118.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..++|+.+|-.++||||++..|.-+... +..||++ +.+..+.. ...++.+||..|++.+..+ +.+++.+..++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRpl--WrhYy~gtqgl 88 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL 88 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHH--HHhhccCCceE
Confidence 3689999999999999999999876533 2224544 55666554 4678889999999999998 89999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeecc
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 574 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~~ 574 (643)
|||+|+.+.+..++.++.+..+....... ..|+++.+||-|+..... ..++...+++. .+.++||.+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~--~~~~LvlANkQDlp~A~~----pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMR--DAIILILANKQDLPDAMK----PQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhh--cceEEEEecCcccccccC----HHHHHHHhccccccCCccEeecccccc
Confidence 99999999877777777666665544444 789999999999987432 22233333222 267899999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |+.+=|.+|.....
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9 99999999887653
No 427
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.52 E-value=1.7e-13 Score=150.56 Aligned_cols=155 Identities=25% Similarity=0.277 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----CCeeeCCccc----CCc-----e-----eEEEEeCCCCCcch
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----APTRLPPDFY----PDR-----V-----PVTIIDTSSSLENK 73 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----~~~~~~~~~~----~~~-----~-----~~~i~Dt~G~~~~~ 73 (643)
...|+|+|++|+|||||+++|.+..+....++.. +.+..+.... ... . .+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 3469999999999999999998776554444311 1111111100 000 1 27899999999998
Q ss_pred hhhHHhhccCCEEEEEEECCCc---ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc-----------------
Q 006490 74 GKLNEELKRADAVVLTYACNQQ---STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------------- 133 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------------- 133 (643)
.++...+..+|++++|+|+++. .+++. +..++.. ++|+++|+||+|+......
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~-----i~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEA-----INILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHH-----HHHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 8888888999999999999873 33333 3344444 7999999999998521000
Q ss_pred -chhhhhhhHH---HH-------------hhcccceEEEeCcccCCChhHHHHHHHH
Q 006490 134 -TSLEEVMGPI---MQ-------------QFREIETCVECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 134 -~~~~~~~~~~---~~-------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 173 (643)
...++....+ .. .++...+++++||.+|.|++++++.+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000001111 11 1222346899999999999999987653
No 428
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.52 E-value=4.4e-14 Score=137.50 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=93.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCC---CCCCee--eCCcccCCceeEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPP---VHAPTR--LPPDFYPDRVPVT 62 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~--------------------------~~~---~~~~~~--~~~~~~~~~~~~~ 62 (643)
+|+|+|++++|||||+.+|+...-... ... ..+.+. ....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999974321100 000 001111 2233446788999
Q ss_pred EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-----cHH-HHHHHHHHHHHhcCCCCcEEEEEecccCCCC--Cccc
Q 006490 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-----TLS-RLSSYWLPELRRLEIKVPIIVAGCKLDLRGD--HNAT 134 (643)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-----s~~-~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~--~~~~ 134 (643)
+|||||+..+...+...+..+|++|+|+|+++.. ... ... ..+....... .+|+++|+||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~iiivvNK~Dl~~~~~~~~- 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHALLARTLG-VKQLIVAVNKMDDVTVNWSEE- 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHHHHHHHcC-CCeEEEEEEccccccccccHH-
Confidence 9999998777666667788899999999998742 111 111 1223333332 3689999999999742 111
Q ss_pred hhhhhhhH---HHHhhcc---cceEEEeCcccCCChh
Q 006490 135 SLEEVMGP---IMQQFRE---IETCVECSATTMIQVP 165 (643)
Q Consensus 135 ~~~~~~~~---~~~~~~~---~~~~~~~Sa~~~~gi~ 165 (643)
..+..... +...++. -.++++|||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 2333321 1369999999999997
No 429
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.52 E-value=1.1e-13 Score=148.65 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=98.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~ 468 (643)
++..++|+++|.+|+|||||+++|+........ .+.++.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 345689999999999999999999954332211 111222233333443
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCC
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDL 545 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl 545 (643)
....+.+|||+|++.+... ....+..+|++++|+|+++ +.. ......+..+... + .|+++|+||+|+
T Consensus 82 -~~~~i~liDtpG~~~~~~~--~~~~~~~aD~~ilVvDa~~~~~~~-~~~~~~~~~~~~~------~~~~iivviNK~Dl 151 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKN--MITGASQADAAVLVVAADDAGGVM-PQTREHVFLARTL------GINQLIVAINKMDA 151 (425)
T ss_pred -CCeEEEEEECCCcccchhh--HhhchhcCCEEEEEEEcccCCCCC-cchHHHHHHHHHc------CCCeEEEEEEcccc
Confidence 3467788999998776543 3456789999999999997 322 1122222222222 4 469999999999
Q ss_pred CCccc-----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHHHH
Q 006490 546 KPYTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 546 ~~~~~-----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l~ 581 (643)
..... ..+++..+.+..++ .+++++||++| |++++.
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 75211 13455566666665 25899999999 998643
No 430
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=1.2e-13 Score=146.59 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=103.1
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCC---CCC-CCCCCCCee-eC---Cc------------c------c-----
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESV---PEK-VPPVHAPTR-LP---PD------------F------Y----- 55 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~---~~~-~~~~~~~~~-~~---~~------------~------~----- 55 (643)
+...++++|+++|+.++|||||+.+|.+... ... ..+ .+. .. .. + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg---~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG---ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE 80 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC---cEEEecccccccccccccCccccccccccccccccc
Confidence 4677889999999999999999999965321 110 111 110 00 00 0 0
Q ss_pred -CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490 56 -PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (643)
Q Consensus 56 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~ 133 (643)
.....+++|||||++++....-..+..+|++++|+|++++. ..+... .+..+.... ..|+++|+||+|+.+....
T Consensus 81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhH
Confidence 00367999999998877665556666789999999998653 222221 223344331 2479999999999754321
Q ss_pred chhhhhhhHHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 134 TSLEEVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
....+.+..+.+.. ....+++++||++|.|+++|++.+...+.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 01112222332221 11246899999999999999999887654
No 431
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.52 E-value=9.9e-15 Score=112.64 Aligned_cols=70 Identities=47% Similarity=0.877 Sum_probs=67.1
Q ss_pred CCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCC-----Cccccchhccchhhhhhhcc
Q 006490 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ 418 (643)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~-----~~~~~~~~~~~~~~~~~~~~ 418 (643)
||.+..++.+++++++|.|+++||+++|.|+++++++.++++|+|+||++ ++..+++++++|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 89999999999999999999999999999999999999999999999999 89999999999999887754
No 432
>COG2262 HflX GTPases [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=136.93 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=110.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-CCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcch--hhhH------Hhh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES-VPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GKLN------EEL 80 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~------~~~ 80 (643)
.-..|+++|-.|+|||||+|+|++.. ++.+ ...+..+++....+.+ +..+.+.||.|+...- .+.. ...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 34579999999999999999999877 4444 3334444444334433 6789999999976421 1111 446
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
..||+++.|+|++++.-.+.+.. ....+.+. ..++|+|+|.||+|+..+.. ....+....+ ..+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~------~~~~~~~~~~---~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE------ILAELERGSP---NPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh------hhhhhhhcCC---CeEEEEec
Confidence 78999999999999977666663 56666654 34799999999999875422 1122222222 48999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (643)
+|.|++.|.+.|...+.
T Consensus 340 ~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 340 TGEGLDLLRERIIELLS 356 (411)
T ss_pred cCcCHHHHHHHHHHHhh
Confidence 99999999999888765
No 433
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=116.03 Aligned_cols=163 Identities=16% Similarity=0.233 Sum_probs=120.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
+..++++||.++|-.|+|||||+..|.+.....-.|+ .+-..+.+.+ .+.+++++||.+|+..-...|..|+.+.|++
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 3457899999999999999999999998875444443 2222222222 4458999999999998889999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHH-Hhhc-ccceEEEeCcccCCC
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR-EIETCVECSATTMIQ 163 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~g 163 (643)
|+|+|.++...++++.+++.+.+... -...|+.+..||-|+...... ++....+- ..+. ..-++-+|||..+.|
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhhhceEEeeeCccccccC
Confidence 99999999999999888777777542 347899999999998754332 11111100 0000 112578999999999
Q ss_pred hhHHHHHHHHH
Q 006490 164 VPDVFYYAQKA 174 (643)
Q Consensus 164 i~~l~~~i~~~ 174 (643)
+.+-.++++..
T Consensus 167 ~~dg~~wv~sn 177 (185)
T KOG0074|consen 167 STDGSDWVQSN 177 (185)
T ss_pred ccCcchhhhcC
Confidence 99988888764
No 434
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.50 E-value=3.6e-13 Score=128.92 Aligned_cols=169 Identities=17% Similarity=0.101 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchh---hh--------HHh
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG---KL--------NEE 79 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~~ 79 (643)
++|+|+|.+|||||||+|++++...........+.|+ ........+..+.++||||+.+... .. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999999874322211111121 2222334678899999999875421 11 123
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCCCCCccch----hhhhhhHHHHhhcccce
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIET 152 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~ 152 (643)
..++|++|+|+++.. .+.++ ...++.+++... -.++++|.|++|......... ....++.+.+.++....
T Consensus 81 ~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 567899999999877 33322 235556654321 368999999999765432101 12456677777775422
Q ss_pred EEEe---CcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490 153 CVEC---SATTMIQVPDVFYYAQKAVLHPTAPLFD 184 (643)
Q Consensus 153 ~~~~---Sa~~~~gi~~l~~~i~~~~~~~~~~~~~ 184 (643)
.+.- |+..+.++.+|++.+.+.+.....+.|.
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~ 192 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYT 192 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 2222 2567899999999998888765554443
No 435
>PRK12736 elongation factor Tu; Reviewed
Probab=99.50 E-value=2.2e-13 Score=144.07 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=106.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
..+++++|+++|+.++|||||+++|++..... +... ..+.+. ....+..++..+.++||||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 35678999999999999999999998631100 0000 011111 2233445667899999999888
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccch-hhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATS-LEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~~-~~~~~~~~~~~~~~ 149 (643)
+.......+..+|++++|+|++....... ...+..+... ++| +|+|+||+|+........ ..+.+..+...++.
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77766677888999999999876533322 2355566665 788 678999999874322101 12234444444432
Q ss_pred ---cceEEEeCcccCC--------ChhHHHHHHHHHHh
Q 006490 150 ---IETCVECSATTMI--------QVPDVFYYAQKAVL 176 (643)
Q Consensus 150 ---~~~~~~~Sa~~~~--------gi~~l~~~i~~~~~ 176 (643)
..+++++||.+|. ++.+|++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2378999999983 56677776665543
No 436
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.50 E-value=4.4e-13 Score=131.42 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CC-Ccc----------cceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENY-----AP-TTG----------EQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~-----~~-t~~----------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~ 488 (643)
+|+++|.+|+|||||+++|+........ .. +.. ...............++.+|||+|+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999864322111 11 111 1122222222324567888999999877665
Q ss_pred hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
+..+++.+|++++|+|++++... ....++..+... ++|+++++||+|+..
T Consensus 81 --~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 --VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAG 130 (237)
T ss_pred --HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccC
Confidence 67889999999999999987653 345555555544 899999999999874
No 437
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=2.3e-13 Score=131.34 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------HhhccCC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EELKRAD 84 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~~~ad 84 (643)
..|.+||-||+|||||+|+|...+. +.+|+-|+-...+......+...+.+-|.||+.+...+-. ..+++++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4578999999999999999998773 3334432211123222223334499999999876443322 5678899
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 85 AVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 85 ~il~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
..+||+|++.+ ...+.+.. +..+++.+. .+.|.++|+||+|+.+. ....+.++...+.+. .++++||
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~pvsA 349 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVPVSA 349 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEEeee
Confidence 99999999988 66666663 666665543 47899999999998632 223346677777642 5899999
Q ss_pred ccCCChhHHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQK 173 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~ 173 (643)
+.++|+.++++.+..
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999999886643
No 438
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.49 E-value=8.8e-14 Score=150.94 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---------C-CC------------eeeCCcccCCceeEEEEeCCC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV---------H-AP------------TRLPPDFYPDRVPVTIIDTSS 68 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~---------~-~~------------~~~~~~~~~~~~~~~i~Dt~G 68 (643)
+..+|+|+|++|+|||||+++|+...-.....+. . .+ ......+..+++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3457999999999999999999742211110000 0 00 001123456788999999999
Q ss_pred CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc
Q 006490 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR 148 (643)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (643)
+.++......+++.+|++|+|+|+++..... ...++...+.. ++|+++++||+|+.... ..+.+..+...++
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVLG 160 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHhC
Confidence 9988887888999999999999988764332 23466666655 89999999999987642 3344555666665
No 439
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=9e-13 Score=117.91 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=117.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCCCCCCeeeCCccc----CCceeEEEEeCCCCCcchhhhH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------VPPVHAPTRLPPDFY----PDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
.....||+|.|+-++||||++.++.....+.. .......++...++. .++..+.++||||++++.-+++
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 56678999999999999999999998763111 111111233333333 3457899999999999999999
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
.+.+++.++|+++|.+.+..++. . .++..+.... .+|+++++||.|+...... +.++++.+....-.+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~-~ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRN-PIPVVVAINKQDLFDALPP----EKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhcc-CCCEEEEeeccccCCCCCH----HHHHHHHHhccCCCceeeee
Confidence 99999999999999999988833 3 4777776653 2999999999999876433 33333333321123789999
Q ss_pred cccCCChhHHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~ 174 (643)
|..+.+..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988877765
No 440
>CHL00071 tufA elongation factor Tu
Probab=99.49 E-value=8.8e-13 Score=140.24 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=98.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCC----------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~----------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~ 483 (643)
.+..++|+++|.+|+|||||+++|++..-.. .+. ..++.+.....+.. +...+.++|++|+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET--ENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc--CCeEEEEEECCChH
Confidence 3456899999999999999999999752111 000 11111111122222 44567789999987
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHH
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARV 558 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~ 558 (643)
.+... ....+..+|++++|+|+..+.. .+....+..+... ++| +|+++||+|+...... .+++..+
T Consensus 87 ~~~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 DYVKN--MITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHH--HHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 66544 5677889999999999987644 3344444444444 788 7789999999864332 3456666
Q ss_pred HHHhCC----CCcEEeeeccC-CH
Q 006490 559 TQELGI----EPPIPVSMKSK-DL 577 (643)
Q Consensus 559 ~~~~~~----~~~~~vSa~~g-~i 577 (643)
.+..++ .+++++||++| |+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 666665 36899999988 63
No 441
>PRK12736 elongation factor Tu; Reviewed
Probab=99.49 E-value=8.8e-13 Score=139.54 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=105.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCC------CCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~------~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~ 485 (643)
.+..++|+++|..++|||||+++|++.... ..+. + ..+................+.++|++|++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 345689999999999999999999863210 0000 0 0111111222233324556788999998876
Q ss_pred hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHHHHH
Q 006490 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSARVTQ 560 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~~~~ 560 (643)
... ....+..+|++++|+|++++.. .+..+.+..+... ++| +|+++||+|+.+.... .+++..+.+
T Consensus 89 ~~~--~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 89 VKN--MITGAAQMDGAILVVAATDGPM-PQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 554 5667789999999999987643 2234444444443 788 6788999999753322 235556666
Q ss_pred HhCC----CCcEEeeeccC---------CHHHHHHHHHHHHh
Q 006490 561 ELGI----EPPIPVSMKSK---------DLNNVFSRIIWAAE 589 (643)
Q Consensus 561 ~~~~----~~~~~vSa~~g---------~i~~l~~~l~~~~~ 589 (643)
..++ .+++++||++| ++.++++.+.+.+.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 6665 36999999997 35677777776654
No 442
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.49 E-value=5.9e-13 Score=146.41 Aligned_cols=152 Identities=20% Similarity=0.184 Sum_probs=96.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc--ccceEEEEEEc----CCCc-----E-----EEEEEecCCchhhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT--GEQYAVNVVDQ----PGGN-----K-----KTLILQEIPEEGVK 486 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~--~~~~~~~~v~~----~g~~-----~-----~~~i~d~~g~~~~~ 486 (643)
+..|+|+|.+|+|||||+|+|.+........... .........+. .|.. . .+.+|||+|++.+.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 4579999999999999999998775443332211 11111111110 0110 0 15789999999887
Q ss_pred hhhccHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------
Q 006490 487 KILSNKEALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------- 550 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~---~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~------------- 550 (643)
.+ +...+..+|++++|+|++++ .+++.+ ..+... ++|+++++||+|+.....
T Consensus 86 ~~--~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~~------~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 86 NL--RKRGGALADIAILVVDINEGFQPQTIEAI----NILKRR------KTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred HH--HHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHHc------CCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 76 56677899999999999984 443332 222222 799999999999853100
Q ss_pred ----cHH----H---HHHHHHHhC--------------CCCcEEeeeccC-CHHHHHHHHHH
Q 006490 551 ----AVQ----D---SARVTQELG--------------IEPPIPVSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 551 ----~~~----~---~~~~~~~~~--------------~~~~~~vSa~~g-~i~~l~~~l~~ 586 (643)
..+ . ........| ..+++++||++| |++++++.+..
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 0 001112222 235899999999 99999988865
No 443
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.49 E-value=4.1e-13 Score=130.27 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCCc------ccceE--EEEE--E-cCCCcEEEEEEecCCc
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENY-----------APTT------GEQYA--VNVV--D-QPGGNKKTLILQEIPE 482 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~-----------~~t~------~~~~~--~~~v--~-~~g~~~~~~i~d~~g~ 482 (643)
+|+|+|.+++|||||+++|+........ ..+. +.... ...+ . ..+....+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999976544321 0000 00111 1111 1 1334567889999999
Q ss_pred hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc------cc------
Q 006490 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY------TM------ 550 (643)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~------~~------ 550 (643)
..+... ...++..+|++++|+|++++.++. ...++...... ++|+++|+||+|+... ..
T Consensus 82 ~~f~~~--~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~------~~p~iiviNK~D~~~~~~~l~~~~~~~~l~ 152 (213)
T cd04167 82 VNFMDE--VAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE------GLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred cchHHH--HHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence 887655 677889999999999999876643 34444444332 7899999999998621 11
Q ss_pred -cHHHHHHHHHHhCC------C----CcEEeeeccC-CHH
Q 006490 551 -AVQDSARVTQELGI------E----PPIPVSMKSK-DLN 578 (643)
Q Consensus 551 -~~~~~~~~~~~~~~------~----~~~~vSa~~g-~i~ 578 (643)
..+.+..++..+++ . ++++.||+.+ ++.
T Consensus 153 ~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 153 HIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 13344445555544 2 2678999988 754
No 444
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.49 E-value=7.7e-13 Score=127.75 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCC------------Ce----eeCCccc--------CCceeEEEEeCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHA------------PT----RLPPDFY--------PDRVPVTIIDTS 67 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~------------~~----~~~~~~~--------~~~~~~~i~Dt~ 67 (643)
+|+|+|+.++|||||+.+|+...-. ....+... .+ .....+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5999999999999999999865411 11111000 00 0111222 237889999999
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
|+.++......+++.+|++|+|+|++...+.+.. .++...... ++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence 9999999999999999999999999887665543 244444444 68999999999986
No 445
>PRK12735 elongation factor Tu; Reviewed
Probab=99.48 E-value=8.8e-13 Score=139.62 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=103.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC--C-Cc-----ccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYA--P-TT-----GEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~--~-t~-----~~~~~~~~v~~~g~~~~~~i~d~~g~~~~ 485 (643)
.+..++|+++|.+++|||||+++|++. .....+. . +. +................+.++||+|++.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 345689999999999999999999962 1110000 0 00 11111112222223456788999999766
Q ss_pred hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHHH
Q 006490 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ 560 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~~ 560 (643)
..- ....+..+|++++|+|+.++.. .+..+.+..+... ++|.+ +++||+|+...... ..+++.+.+
T Consensus 89 ~~~--~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 89 VKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHH--HHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 543 5677789999999999988643 2333444444433 78865 57999999753222 335666677
Q ss_pred HhCC----CCcEEeeeccC-C----------HHHHHHHHHHHHh
Q 006490 561 ELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE 589 (643)
Q Consensus 561 ~~~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~ 589 (643)
.+++ .+++++||++| | +.+|++.|...+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 7665 35899999997 3 5677777776544
No 446
>PRK12735 elongation factor Tu; Reviewed
Probab=99.48 E-value=3.3e-13 Score=142.81 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=98.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------CC----CCCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------VP----EKVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~----~~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
..++.++|+++|++++|||||+++|++.. +. .+..+ ..+.+. ....+..++..+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 45778999999999999999999998621 10 00000 011111 1223445567899999999987
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCcc-chhhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~-~~~~~~~~~~~~~~~~ 149 (643)
+.......+..+|++++|+|+......+.. ..+..+... ++|.+ +|+||+|+...... ......+..+...++.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 777677788899999999998865332221 344555555 68865 57999999743211 0122234445554432
Q ss_pred ---cceEEEeCcccCCC
Q 006490 150 ---IETCVECSATTMIQ 163 (643)
Q Consensus 150 ---~~~~~~~Sa~~~~g 163 (643)
..+++++||.+|.|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 164 PGDDTPIIRGSALKALE 180 (396)
T ss_pred CcCceeEEecchhcccc
Confidence 24689999999854
No 447
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=2.2e-13 Score=119.55 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC----cchhhhHHhhccCCEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----ENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~ad~il~v 89 (643)
||+|+|+.|||||||+++|.+...... . |. ...+ .=.++||||-. .+....-....+||++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--K----Tq-~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--K----TQ-AIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--c----cc-eeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 799999999999999999999764211 1 00 0111 12459999943 1222233456789999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
.|++++.+.-.-. +. ..+ ++|+|-|+||+|+..+... . +..+.+.+.-| ...+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~~~pP~--fa---~~f--~~pvIGVITK~Dl~~~~~~--i-~~a~~~L~~aG-~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRSVFPPG--FA---SMF--NKPVIGVITKIDLPSDDAN--I-ERAKKWLKNAG-VKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCccCCch--hh---ccc--CCCEEEEEECccCccchhh--H-HHHHHHHHHcC-CCCeEEEECCCCcCHHHHHH
Confidence 9999875533211 22 222 6899999999999843221 2 33445555555 34689999999999999998
Q ss_pred HHH
Q 006490 170 YAQ 172 (643)
Q Consensus 170 ~i~ 172 (643)
.+.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 763
No 448
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=127.27 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=113.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc-----hhhhhh-hccHH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKI-LSNKE 493 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-----~~~~~~-~~~~~ 493 (643)
......|+|.|.||||||||++++++.+....+.|-|+-...+-.++.+ ...+.++||+|- ++...+ .++..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 4466889999999999999999999988777777755545555555544 345667899982 111111 12344
Q ss_pred hhc-cCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEe
Q 006490 494 ALA-SCDVTIFVYDSSD--EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 494 ~~~-~ad~illv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 570 (643)
+++ =+++|+|++|.+. +-+.+.-..++.++.... +.|+++|+||+|........+.... ...-+......+
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~ 316 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKI 316 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccchhHHHHHHHH-HHhhccccccce
Confidence 454 4789999999986 345566666777777664 6899999999998864433333333 334444446889
Q ss_pred eeccC-CHHHHHHHHHHHHhC
Q 006490 571 SMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~~ 590 (643)
|+..+ +++.+-+.+...+..
T Consensus 317 ~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 317 SATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeeehhhHHHHHHHHHHHhhc
Confidence 99999 999988888887653
No 449
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.48 E-value=6.3e-13 Score=128.97 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh-------hHHhhcc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEELKR 82 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 82 (643)
...+|++||.|+||||||+|+|++..- +.+++- ++.+.+++.+..++..++++|+||+.+..+. .-..++.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~F-TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCc-eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 347899999999999999999999773 233442 2334478888899999999999997643322 2267899
Q ss_pred CCEEEEEEECCCccc-HHHHHHHH----------------------------------------HHHHHhc---------
Q 006490 83 ADAVVLTYACNQQST-LSRLSSYW----------------------------------------LPELRRL--------- 112 (643)
Q Consensus 83 ad~il~v~d~~~~~s-~~~~~~~~----------------------------------------~~~l~~~--------- 112 (643)
||++++|+|+....+ .+.+..++ ...++++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999886654 33332211 1112221
Q ss_pred ----------------CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 113 ----------------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 113 ----------------~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
..-+|.+.|.||+|+... +....+.+.. .++.+||+.+.|+++|.+.+.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence 114899999999998752 2233333333 589999999999999999999987
No 450
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=3.4e-13 Score=117.40 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---------hhHHhhcc
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEELKR 82 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~ 82 (643)
+|+|+|.+|||||||+|+|++... ....++++... ....+...+..+.++||||+..... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 699999999999999999998653 23344433332 2233345677789999999864311 12244588
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 124 (643)
+|++++|+|+.++.. +.. ..++++++ .++|+++|.||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 999999999777432 222 24666665 38999999998
No 451
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.8e-13 Score=115.93 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=121.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY 90 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 90 (643)
.+.+|.++|--|+||||+.-++--.+.+.+.|+... ....+..++.++.+||.+|+......|..++.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf---nve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF---NVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc---CccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 678999999999999999999888777666555322 22344558899999999999998999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCcc--chhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNA--TSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 91 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|.++++........+..++++-. .+..+++++||.|-...-.. ......+..+.++. ..++++||.+|+|+++.
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGEGLDPA 170 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhe---eEEEeeccccccCCcHH
Confidence 99998777666666776775422 36778889999997653211 01222333344333 36899999999999999
Q ss_pred HHHHHHHHh
Q 006490 168 FYYAQKAVL 176 (643)
Q Consensus 168 ~~~i~~~~~ 176 (643)
++|+++.+.
T Consensus 171 ~DWL~~~l~ 179 (182)
T KOG0072|consen 171 MDWLQRPLK 179 (182)
T ss_pred HHHHHHHHh
Confidence 999998764
No 452
>CHL00071 tufA elongation factor Tu
Probab=99.47 E-value=4.4e-13 Score=142.55 Aligned_cols=154 Identities=15% Similarity=0.165 Sum_probs=101.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCC---CCCCee--eCCcccCCceeEEEEeCCCCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-----------VPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL 70 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-----------~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 70 (643)
...++.++|+++|++++|||||+++|++..-... ... ..+.+. ....+..++..+.++||||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 3467789999999999999999999997521100 000 011111 112334567789999999988
Q ss_pred cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCcc-chhhhhhhHHHHhhc
Q 006490 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR 148 (643)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~ 148 (643)
++.......+..+|++++|+|+.....-+ ....+..+... ++| +|+|+||+|+...... ......+..+...++
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q--t~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQ--TKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHH--HHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 87777778889999999999987654322 22355566665 788 7789999999753221 012223444444443
Q ss_pred c---cceEEEeCcccCCCh
Q 006490 149 E---IETCVECSATTMIQV 164 (643)
Q Consensus 149 ~---~~~~~~~Sa~~~~gi 164 (643)
. ..+++++||.+|.|+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 2 247899999999754
No 453
>PRK10218 GTP-binding protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=143.55 Aligned_cols=160 Identities=13% Similarity=0.149 Sum_probs=108.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC------------CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYA------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 488 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~ 488 (643)
.-+|+|+|..++|||||+++|+.. .+..... .+.+..+......+.....++.+|||+|+..+...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 458999999999999999999973 2221110 12222333333444445678889999999888766
Q ss_pred hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH-----
Q 006490 489 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE----- 561 (643)
Q Consensus 489 ~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~----- 561 (643)
+..+++.+|++++|+|++++... +...++..+... ++|+++++||+|+..... ..+++..+...
T Consensus 85 --v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 85 --VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred --HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 67889999999999999986442 334444444443 899999999999865321 12233333222
Q ss_pred --hCCCCcEEeeeccC-C----------HHHHHHHHHHHHhCCC
Q 006490 562 --LGIEPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH 592 (643)
Q Consensus 562 --~~~~~~~~vSa~~g-~----------i~~l~~~l~~~~~~~~ 592 (643)
..+ |++++||++| + +..+++.+++.+..|.
T Consensus 156 ~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 156 EQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 223 4899999998 6 6788888888776553
No 454
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.47 E-value=4.5e-15 Score=131.32 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=131.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..-+|+.|+|.-|||||+++.+++...|...+..+.+... .....+. .-+++.+||..|++++..+...++++|++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 3347999999999999999999999887666555444443 2222222 246788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|||+++..+++... .|.+.+... +...|+|+..||||....... .....+..+.++.+ +...+++|++.+
T Consensus 103 ~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~keng-f~gwtets~Ken 179 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENG-FEGWTETSAKEN 179 (229)
T ss_pred EEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccC-ccceeeeccccc
Confidence 9999999999999988 599888542 346789999999998775433 22344555666555 457999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006490 162 IQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (643)
.|++|....+.+.++...
T Consensus 180 kni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVND 197 (229)
T ss_pred cChhHHHHHHHHHHHhhc
Confidence 999999999999876554
No 455
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=8.1e-13 Score=128.91 Aligned_cols=159 Identities=22% Similarity=0.254 Sum_probs=108.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCc----chhhhH----Hhh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLN----EEL 80 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~----~~~ 80 (643)
++...|+|.|.||||||||++++++.+... .||-++- .-..+.+..+..+++++||||+-+ ..+..+ .++
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK-~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTK-GIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccc-ceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 455679999999999999999999987433 3443211 114456777888999999999753 111111 233
Q ss_pred c-cCCEEEEEEECCC--cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 81 K-RADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 81 ~-~ad~il~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
+ -+++|+|+||.+. ..+.+... .++..++... +.|+++|.||+|....... ++.... ...-+. .....++
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~---~~~~~~-~~~~~~-~~~~~~~ 317 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELF-KAPIVVVINKIDIADEEKL---EEIEAS-VLEEGG-EEPLKIS 317 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhc-CCCeEEEEecccccchhHH---HHHHHH-HHhhcc-cccccee
Confidence 3 3689999999874 46777776 4788887655 4899999999998754332 222222 222222 2467899
Q ss_pred cccCCChhHHHHHHHHHHh
Q 006490 158 ATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~ 176 (643)
+..+.+++.+-..+.....
T Consensus 318 ~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 318 ATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred eeehhhHHHHHHHHHHHhh
Confidence 9999999988877766543
No 456
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.47 E-value=9.9e-13 Score=125.81 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=95.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccc---ceEEEEEEcCCCcEEEEEEecCCchhhhh----hhccHHhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE---QYAVNVVDQPGGNKKTLILQEIPEEGVKK----ILSNKEAL 495 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~---~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----~~~~~~~~ 495 (643)
++||+|+|++|||||||+|+|++........+++.. ......+..+ ....+.+||++|...... .. ....+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l-~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYL-EEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHH-HHhCc
Confidence 378999999999999999999996654322222111 1111122222 233567899999643211 11 12235
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc------------cH-H---HHHHHH
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AV-Q---DSARVT 559 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~------------~~-~---~~~~~~ 559 (643)
.++|++++|.|. +.+ +....++..+... +.|+++|+||+|+..... .. + .+.+..
T Consensus 79 ~~~d~~l~v~~~--~~~-~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 79 SEYDFFIIISST--RFS-SNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred cCcCEEEEEeCC--CCC-HHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence 789999998543 222 3344566666654 789999999999853211 11 1 111122
Q ss_pred HHh--CCCCcEEeeec--cC-CHHHHHHHHHHHHh
Q 006490 560 QEL--GIEPPIPVSMK--SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 560 ~~~--~~~~~~~vSa~--~g-~i~~l~~~l~~~~~ 589 (643)
+.. ..++++.+|+. .+ |+..+.+.+...+.
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 221 24478999998 56 89999999988875
No 457
>PRK12739 elongation factor G; Reviewed
Probab=99.47 E-value=2.1e-13 Score=154.31 Aligned_cols=232 Identities=11% Similarity=0.093 Sum_probs=137.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC----CC-C-----------CCCCee--eCCcccCCceeEEEEeCCCCCcch
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK----VP-P-----------VHAPTR--LPPDFYPDRVPVTIIDTSSSLENK 73 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~----~~-~-----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~ 73 (643)
-.+|+|+|++|+|||||+++|+...-... .. + ..+.+. ....+..++..++++||||+.++.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 34699999999999999999975321000 00 0 000111 222344578899999999998887
Q ss_pred hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc--c
Q 006490 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--E 151 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~ 151 (643)
..+..+++.+|++|+|+|+......+. ..++..+... ++|+|+++||+|+.... ....+..+...++.. .
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~~~ 159 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANAVP 159 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCcee
Confidence 788899999999999999877644333 2466666666 79999999999998642 344556666666531 2
Q ss_pred eEEEeCcccCCC-hhHHHHHHHHHHhCCC--CCCCcc------ccccchHHHHHHHHhhhhhcCCCCCC-----CCChHH
Q 006490 152 TCVECSATTMIQ-VPDVFYYAQKAVLHPT--APLFDH------DEQTLKPRCVRALKRIFIICDHDMDG-----ALNDAE 217 (643)
Q Consensus 152 ~~~~~Sa~~~~g-i~~l~~~i~~~~~~~~--~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~-----~l~~~e 217 (643)
..+++|+..+.+ +-++..... ..+... ...+.. ......+...+.++.+....+...+. .+..++
T Consensus 160 ~~iPis~~~~f~g~vd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~ 238 (691)
T PRK12739 160 IQLPIGAEDDFKGVIDLIKMKA-IIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEE 238 (691)
T ss_pred EEecccccccceEEEEcchhhh-hhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHH
Confidence 357888876642 223332111 111110 000000 00001111222233333222222222 233444
Q ss_pred HHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 218 LNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 218 l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
+..... -.++.++...+++.+++.+..++|+|.+.
T Consensus 239 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~ 283 (691)
T PRK12739 239 IKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV 283 (691)
T ss_pred HHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhc
Confidence 432222 15778899999999999999999998754
No 458
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=1.1e-12 Score=139.38 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=100.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------CcccceEEE------------EEEc----C--C----CcEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAP------TTGEQYAVN------------VVDQ----P--G----GNKK 473 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~------t~~~~~~~~------------~v~~----~--g----~~~~ 473 (643)
..++|+++|.+++|||||+++|.+.... .+.. |....+... .+++ . | ....
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4589999999999999999999764211 1110 111111000 0001 0 0 1356
Q ss_pred EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--
Q 006490 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-- 551 (643)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-- 551 (643)
+.++|++|++.+... +...+..+|++++|+|++++....+..+.+..+... . ..|+++|+||+|+......
T Consensus 82 i~liDtPGh~~f~~~--~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g----i~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 82 VSFVDAPGHETLMAT--MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G----IKNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEECCCHHHHHHH--HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C----CCeEEEEEEccccCCHHHHHH
Confidence 778999999887654 566778899999999999754112223333333222 1 3568999999999864322
Q ss_pred -HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 552 -VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 552 -~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.+.+..+.+.. ++ +++++||++| |+++++++|...+.
T Consensus 155 ~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 155 NYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 22333333332 23 4899999999 99999999998654
No 459
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.46 E-value=4.1e-13 Score=113.35 Aligned_cols=156 Identities=22% Similarity=0.253 Sum_probs=122.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||.++|-.|+|||||+..|.+.+.... |.+.++.++.+... +...+.+||..|+..+... +..|+.+.|.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~k~v~~~-g~f~LnvwDiGGqr~IRpy--WsNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNTKKVEYD-GTFHLNVWDIGGQRGIRPY--WSNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcceEEEeec-CcEEEEEEecCCccccchh--hhhhhhccce
Confidence 5679999999999999999999998764332 33445677777777 6778889999999998888 8999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~ 573 (643)
+|+|+|.+|...|+++...+.++.+..... ..|+.+-+||-|+... ..+++.+.+++.. .+-++||.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCccc
Confidence 999999999988888777776666544433 7899999999998763 3344455555433 36789999
Q ss_pred cC-CHHHHHHHHHHHH
Q 006490 574 SK-DLNNVFSRIIWAA 588 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~ 588 (643)
++ |+.+-.+++....
T Consensus 163 s~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccCccCcchhhhcCC
Confidence 99 9888887776544
No 460
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=5e-13 Score=127.29 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=114.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CC-CCCCCeeeCCcccCCceeEEEEeCCCCCc-------chhhhH
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLN 77 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~ 77 (643)
.....++|.|+|.+|||||||+|+|......+. .+ ++..+++.... ..+-.+++|||||.++ +.....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~--~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS--YDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh--ccccceEEecCCCcccchhhhHHHHHHHH
Confidence 356778999999999999999999997653222 22 22222222222 3345699999999986 333455
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC--------cc-----chhhhhhhHHH
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGPIM 144 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~--------~~-----~~~~~~~~~~~ 144 (643)
.++.+.|+++++.++.++.--.+. +++..+...+.++|+++++|.+|....- .. ...++..+.+.
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 778899999999998887533333 3555555545579999999999976431 00 01233334444
Q ss_pred HhhcccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 145 ~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
+.+....+++..|...+-|++.+...+++.+...
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 4455566788888899999999999999987643
No 461
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.46 E-value=5.6e-13 Score=141.27 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------C----CCC------CCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------V----PEK------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~----~~~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 70 (643)
..+++++|+++|+.++|||||+++|++.. + ..+ ..+.+ .......+..++..+.+|||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~T-i~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGIT-INTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcc-eeeEEEEEcCCCEEEEEEECCchH
Confidence 46778999999999999999999998431 0 000 11111 111223344567789999999998
Q ss_pred cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCccc-hhhhhhhHHHHhhc
Q 006490 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNAT-SLEEVMGPIMQQFR 148 (643)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~~-~~~~~~~~~~~~~~ 148 (643)
+|.......+..+|++++|+|++.....+.. +.+..+... ++|.+ +|+||+|+.+..... ...+.++.+...++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8876666777889999999998874333322 345555555 67765 689999987532210 11233455555554
Q ss_pred c---cceEEEeCcccCC
Q 006490 149 E---IETCVECSATTMI 162 (643)
Q Consensus 149 ~---~~~~~~~Sa~~~~ 162 (643)
. ..+++++||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 2 1478999999885
No 462
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=7.9e-13 Score=141.83 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=98.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------------CC-------CCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------------------YA-------PTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~------------------------~~-------~t~~~~~~~~~v~~~ 468 (643)
.+..++|+++|..++|||||+++|+...-... .+ ..++.+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 34568999999999999999999985321110 00 12222233333443
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKR--TKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~--~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
....+.+||++|++.+... ....+..+|++++|+|++++.++.. ...++. +..... ..|+++|+||+|+.
T Consensus 83 -~~~~i~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~----~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKN--MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG----INQLIVAINKMDSV 154 (426)
T ss_pred -CCeEEEEEECCCHHHHHHH--HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC----CCeEEEEEEChhcc
Confidence 3467789999998876543 4556789999999999998854311 111111 222211 35799999999997
Q ss_pred Cc-cc----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHH
Q 006490 547 PY-TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLNN 579 (643)
Q Consensus 547 ~~-~~----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~ 579 (643)
.. .. ..+++..+++..++ .+++++||++| |+.+
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 42 11 14556667777775 25899999999 9986
No 463
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.46 E-value=2.3e-12 Score=118.57 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=59.2
Q ss_pred hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490 74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (643)
Q Consensus 74 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (643)
.+....++++|++|+|+|++++...... .+...+... ++|+++|+||+|+..... . .....+....+ .++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~-~~~~~~~~~~~--~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV---L-EKWKSIKESEG--IPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH---H-HHHHHHHHhCC--CcE
Confidence 4556778889999999999876433321 244444433 789999999999853211 1 11112222222 368
Q ss_pred EEeCcccCCChhHHHHHHHH
Q 006490 154 VECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~ 173 (643)
+++||+++.|++++++.+.+
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~ 93 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKE 93 (156)
T ss_pred EEEEccccccHHHHHHHHHH
Confidence 99999999999998876543
No 464
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=1.3e-12 Score=143.80 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCCCC---------CC---CcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490 425 RCLLFGPQNAGKSALLNSFLER--PFSENY---------AP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~--~~~~~~---------~~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~ 490 (643)
+|+|+|..++|||||+++|+.. .+.... .+ ..+.........+.....++.+|||+|+..+...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e-- 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE-- 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH--
Confidence 6999999999999999999963 221111 00 1111222222222224577889999999888765
Q ss_pred cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc--cHHHHHHHHHH-------
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE------- 561 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~~~~~~------- 561 (643)
...+++.+|++++|+|++++.. .+...++..+... ++|+++|+||+|+..... ...+...+...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 6788999999999999987643 4456666666554 899999999999865321 22333333322
Q ss_pred hCCCCcEEeeeccC-----------CHHHHHHHHHHHHhCCC
Q 006490 562 LGIEPPIPVSMKSK-----------DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 562 ~~~~~~~~vSa~~g-----------~i~~l~~~l~~~~~~~~ 592 (643)
..+ |++++||++| |+..+|+.+.+.+..|.
T Consensus 154 l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 154 LDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 233 4899999998 48899999998876553
No 465
>PRK13351 elongation factor G; Reviewed
Probab=99.45 E-value=2.3e-13 Score=154.53 Aligned_cols=234 Identities=13% Similarity=0.095 Sum_probs=135.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CC-C----------CCe--eeCCcccCCceeEEEEeCCCCCcc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-----PV-H----------APT--RLPPDFYPDRVPVTIIDTSSSLEN 72 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-----~~-~----------~~~--~~~~~~~~~~~~~~i~Dt~G~~~~ 72 (643)
+..+|+|+|+.|+|||||+++|+...-..... +. . +.+ .....+.+.++.+++|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 34679999999999999999998643110000 00 0 000 011234456889999999999988
Q ss_pred hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccce
Q 006490 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (643)
Q Consensus 73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (643)
...+..+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+... .....++.+...++....
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~~ 158 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRPL 158 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCeE
Confidence 888899999999999999998877665543 44555555 7999999999998764 345666677777764322
Q ss_pred EEEeCcccCCChhHHHHHHHHHH-hCCCC---CCCcc-c-cccch----HHHHHHHHhhhhhcCCC-----CCCCCChHH
Q 006490 153 CVECSATTMIQVPDVFYYAQKAV-LHPTA---PLFDH-D-EQTLK----PRCVRALKRIFIICDHD-----MDGALNDAE 217 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~-~~~~~---~~~~~-~-~~~~~----~~~~~~l~~~~~~~~~~-----~~~~l~~~e 217 (643)
.+......+.++..+.+.+.... ..... ..... . ..... ....+.++.+....+.. .+..++.++
T Consensus 159 ~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~ 238 (687)
T PRK13351 159 PLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQ 238 (687)
T ss_pred EEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHH
Confidence 23333333332222221111110 00000 00000 0 00001 11111122211111111 133455566
Q ss_pred HHHHhhh----------hcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 218 LNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 218 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
+...... +++.+....+++.+++.+..+.|+|.+.
T Consensus 239 l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~ 283 (687)
T PRK13351 239 LRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEV 283 (687)
T ss_pred HHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhc
Confidence 5433332 5778899999999999999999998643
No 466
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.45 E-value=3.3e-12 Score=129.75 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=54.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCc----------------------cc-CCceeEEEEeCCCCC
Q 006490 15 VVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPD----------------------FY-PDRVPVTIIDTSSSL 70 (643)
Q Consensus 15 I~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~----------------------~~-~~~~~~~i~Dt~G~~ 70 (643)
|+|+|.||||||||+|+|++.... .++|.++-....... .+ ...+.+.+|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998742 334432211111000 11 134789999999983
Q ss_pred ----cchhhhHH---hhccCCEEEEEEECCC
Q 006490 71 ----ENKGKLNE---ELKRADAVVLTYACNQ 94 (643)
Q Consensus 71 ----~~~~~~~~---~~~~ad~il~v~d~~~ 94 (643)
++..+... .++.||++++|+|+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 34444344 5999999999999963
No 467
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.45 E-value=8.2e-13 Score=143.45 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-C---------CCC------------eeeCCcccCCceeEEEEeCC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-V---------HAP------------TRLPPDFYPDRVPVTIIDTS 67 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-~---------~~~------------~~~~~~~~~~~~~~~i~Dt~ 67 (643)
.+..+|+|+|++|+|||||+++|+...-.....+ + ... ......+..+++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3445799999999999999999864321111010 0 000 00112345678999999999
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 147 (643)
|+.++......+++.+|++|+|+|+++.. +.....+++..+.. ++|+++++||+|+.... ..+.+..+...+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~~PiivviNKiD~~~~~----~~~ll~~i~~~l 160 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRLR--DTPIFTFMNKLDRDIRD----PLELLDEVENEL 160 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHhc--CCCEEEEEECccccCCC----HHHHHHHHHHHh
Confidence 99888777788999999999999987752 22233466666555 79999999999986532 333444444554
Q ss_pred c
Q 006490 148 R 148 (643)
Q Consensus 148 ~ 148 (643)
+
T Consensus 161 ~ 161 (527)
T TIGR00503 161 K 161 (527)
T ss_pred C
Confidence 4
No 468
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.6e-12 Score=127.44 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----hhccHHhhccCC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASCD 499 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~ad 499 (643)
-|-+||-||+|||||++++..-+-.+...|-|+..-..=++.+. ....+++-|.+|--+=.+ -.+-.+.+.+|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 47899999999999999999866555444533322222233333 455667778777211100 122467889999
Q ss_pred EEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 500 VTIFVYDSSDEY---SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 500 ~illv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
++++|+|++..+ -.++...+..++..+..... ++|.++|+||+|+.... ......+.+.+..++...+++||.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~-~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA-EKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc-cCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 999999998543 24555555666666543221 79999999999965543 33455566666667664444999999
Q ss_pred -CHHHHHHHHHHHHhCC
Q 006490 576 -DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~ 591 (643)
|++++...+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 9999999998877543
No 469
>PRK12289 GTPase RsgA; Reviewed
Probab=99.43 E-value=1.8e-12 Score=133.23 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=58.7
Q ss_pred hhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490 75 KLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (643)
+...++.++|.+++|+|+.++. ....+. +|+..+... ++|++||+||+|+..... . +........++ ..+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~~--~ip~ILVlNK~DLv~~~~---~-~~~~~~~~~~g--~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAEST--GLEIVLCLNKADLVSPTE---Q-QQWQDRLQQWG--YQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEEchhcCChHH---H-HHHHHHHHhcC--CeE
Confidence 3445688999999999998775 343444 566665444 899999999999964311 1 11111122333 368
Q ss_pred EEeCcccCCChhHHHH
Q 006490 154 VECSATTMIQVPDVFY 169 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~ 169 (643)
+.+||+++.|+++|++
T Consensus 153 ~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 153 LFISVETGIGLEALLE 168 (352)
T ss_pred EEEEcCCCCCHHHHhh
Confidence 9999999999987765
No 470
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.43 E-value=2.1e-12 Score=123.04 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=60.5
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHH-----Hh
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ 146 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-----~~ 146 (643)
+...+..+++++|++++|+|++++... |...+.....++|+++|+||+|+...... .+....+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence 356777899999999999999876421 22222222347899999999998653221 11122222 11
Q ss_pred hc-ccceEEEeCcccCCChhHHHHHHHH
Q 006490 147 FR-EIETCVECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 147 ~~-~~~~~~~~Sa~~~~gi~~l~~~i~~ 173 (643)
.+ ....++++||++|.|++++++.+.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 11 1125899999999999998876543
No 471
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=127.71 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhh-------HHhhccCCE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL-------NEELKRADA 85 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ad~ 85 (643)
-|.+||-||+|||||++.+...+.. .+||-|+-...+.+.-......|.+-|.||+.+..+.- -..++++-+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 4679999999999999999987743 34554332222222222456679999999987543321 156788999
Q ss_pred EEEEEECCCccc---HHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 86 VVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 86 il~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.|+|++..+. .+++. .+..++..+. .++|.++|+||+|+..+.+. .+.....+.+..+....++ +||.
T Consensus 241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~-ISa~ 316 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL-ISAL 316 (369)
T ss_pred eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-eehh
Confidence 999999986653 55555 3777777664 48999999999996644322 2333344444444322233 9999
Q ss_pred cCCChhHHHHHHHHHHhC
Q 006490 160 TMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~ 177 (643)
++.|++++...+.+.+..
T Consensus 317 t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 317 TREGLDELLRALAELLEE 334 (369)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999999988776543
No 472
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=1.2e-12 Score=127.50 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC------------------------C--CC-----CCcccceEEEEEEcCCCcEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSE------------------------N--YA-----PTTGEQYAVNVVDQPGGNKK 473 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~------------------------~--~~-----~t~~~~~~~~~v~~~g~~~~ 473 (643)
+|+++|.+++|||||+.+|+...-.. . +. ..++.+.....+.+ ...+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 48999999999999999997421100 0 00 01111222233333 3467
Q ss_pred EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
+.++|++|+..+... ....+..+|++++|+|++++.. | ......+...... . ..|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~--~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPN--MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHH--HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C----CCeEEEEEEcccccc
Confidence 788999998766543 5667788999999999998521 0 1122222222222 1 368999999999973
Q ss_pred c---cc----cHHHHHHHHHHhCC----CCcEEeeeccC-CHH
Q 006490 548 Y---TM----AVQDSARVTQELGI----EPPIPVSMKSK-DLN 578 (643)
Q Consensus 548 ~---~~----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~ 578 (643)
. .. ..+.++.+.+.+++ .++++|||++| |++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 11 12334444556655 35899999999 986
No 473
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.42 E-value=3.4e-12 Score=135.48 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=99.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CCcccceEEEE------------EEcC------C----CcEE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNV------------VDQP------G----GNKK 473 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-----~t~~~~~~~~~------------v~~~------g----~~~~ 473 (643)
+..++|+++|..++|||||+.+|.+........ .|....+.... ..+. + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 456899999999999999999997642111110 11111110000 0000 1 1256
Q ss_pred EEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCcccc
Q 006490 474 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTMA 551 (643)
Q Consensus 474 ~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~~ 551 (643)
+.+||++|++.+..- .......+|++++|+|++++. .-+ ....+..+... + .|+++|+||+|+.+....
T Consensus 87 i~liDtPG~~~f~~~--~~~~~~~~D~~llVVDa~~~~~~~~-t~~~l~~l~~~------~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 87 VSFVDAPGHETLMAT--MLSGAALMDGAILVIAANEPCPQPQ-TKEHLMALDII------GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEEECCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCCChh-HHHHHHHHHHc------CCCcEEEEEEeeccccchhH
Confidence 788999999877543 455667789999999999753 212 22222222222 3 468999999999764332
Q ss_pred H---HHHHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490 552 V---QDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 552 ~---~~~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
. +....+.+... ..+++++||++| |++++++.|...+..
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2 23333333221 235899999999 999999999887643
No 474
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.42 E-value=4e-12 Score=134.74 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=95.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC-----C---CcccceEEEEEEcCCCcEEEEEEecCCchhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENYA-----P---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 485 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~-----~---t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~ 485 (643)
.+..++|+++|..++|||||+++|++. .....+. + ..+.......+........+.++||+|++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345689999999999999999999843 1111000 0 0111111222333334567789999999877
Q ss_pred hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHHH
Q 006490 486 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVTQ 560 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~~ 560 (643)
... ....+..+|++++|+|++++.. .+..+.+..+... ++|.+ +|+||+|+.+.... .++++.+.+
T Consensus 89 ~~~--~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 89 VKN--MITGAAQMDGAILVVSATDGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 553 4566788999999999998543 2233444444433 67765 68999999764322 335666777
Q ss_pred HhCC----CCcEEeeeccC
Q 006490 561 ELGI----EPPIPVSMKSK 575 (643)
Q Consensus 561 ~~~~----~~~~~vSa~~g 575 (643)
.+++ .+++++||++|
T Consensus 160 ~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred hcCCCccCccEEECccccc
Confidence 7765 36899999986
No 475
>PRK00049 elongation factor Tu; Reviewed
Probab=99.42 E-value=1.5e-12 Score=137.67 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=98.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC---C--------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---E--------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~---~--------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
..++.++|+++|+.++|||||+++|++.... . +... ..+.+. ....+..++..+.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3577899999999999999999999873110 0 0000 011111 2223344677899999999987
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~ 149 (643)
+.......+..+|++++|+|+....... ...++..+... ++|++ +++||+|+....... .....+..+...++.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q--t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ--TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH--HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 7777778889999999999987653332 22456666666 78976 589999987422110 012223333333321
Q ss_pred ---cceEEEeCcccCCC
Q 006490 150 ---IETCVECSATTMIQ 163 (643)
Q Consensus 150 ---~~~~~~~Sa~~~~g 163 (643)
..+++++||.+|.+
T Consensus 164 ~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 164 PGDDTPIIRGSALKALE 180 (396)
T ss_pred CccCCcEEEeecccccC
Confidence 24689999998753
No 476
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.42 E-value=2e-12 Score=139.35 Aligned_cols=156 Identities=17% Similarity=0.072 Sum_probs=99.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCCC-------------------Ce--eeCCcc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVHA-------------------PT--RLPPDF 54 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~------------~~~~~-------------------~~--~~~~~~ 54 (643)
..+..++|+++|++++|||||+++|+...-.... .+... .+ .....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3577799999999999999999999865411110 11110 00 011123
Q ss_pred cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~ 134 (643)
..++..+.|+||||++.+.......+..+|++|+|+|++........ ..+..+.... ..|+|+|+||+|+......
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~lg-~~~iIvvvNKiD~~~~~~~- 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLLG-IKHLVVAVNKMDLVDYSEE- 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHhC-CCceEEEEEeeccccchhH-
Confidence 35677899999999888766666778999999999998765322111 1222233332 2578999999998753221
Q ss_pred hhhhhhhHH---HHhhc--ccceEEEeCcccCCChhHH
Q 006490 135 SLEEVMGPI---MQQFR--EIETCVECSATTMIQVPDV 167 (643)
Q Consensus 135 ~~~~~~~~~---~~~~~--~~~~~~~~Sa~~~~gi~~l 167 (643)
...+....+ ...++ ...+++++||++|.|+.++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 122222222 23332 1246899999999999864
No 477
>PLN03126 Elongation factor Tu; Provisional
Probab=99.41 E-value=5.5e-12 Score=135.25 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=97.9
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CC---C-------CCcccceEEEEEEcCCCcEEEEEEecCCc
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NY---A-------PTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~---~-------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~ 482 (643)
..+..++|+++|.+++|||||+++|++..... .+ + ..++.+.....+.+ ....+.++|++|+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCH
Confidence 35667999999999999999999999632111 11 0 01111122222333 3456778999999
Q ss_pred hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc----HHHHHH
Q 006490 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA----VQDSAR 557 (643)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~ 557 (643)
+.+-.- ....+..+|++++|+|+.++.. .+..+++..+... ++| +|+++||+|+...... .+++..
T Consensus 155 ~~f~~~--~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ADYVKN--MITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred HHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 887554 5677789999999999998754 3344555544444 788 7789999999763322 335556
Q ss_pred HHHHhCCC----CcEEeeeccC
Q 006490 558 VTQELGIE----PPIPVSMKSK 575 (643)
Q Consensus 558 ~~~~~~~~----~~~~vSa~~g 575 (643)
+.+..++. +++++||.+|
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred HHHhcCCCcCcceEEEEEcccc
Confidence 66666543 6899999987
No 478
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=9.2e-12 Score=111.50 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=110.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------C---cccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-------T---TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 490 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-------t---~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~ 490 (643)
-...||+|+|+.++||||++.++.......+..+ . ++.....-.+... +.....+++|+||+++..+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm-- 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM-- 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH--
Confidence 3467999999999999999999998874332111 1 1111111112222 3356678999999999988
Q ss_pred cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh--CCCCcE
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL--GIEPPI 568 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~ 568 (643)
+.-..++++++++++|.+.+..+ .....+..+.... .+|+++++||.||..... .+.++++...- .. |++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~-~vi 156 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLELLSV-PVI 156 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhccCCC-cee
Confidence 77888999999999999999887 4445554444331 389999999999987443 33444443333 44 599
Q ss_pred EeeeccC-CHHHHHHHHHHH
Q 006490 569 PVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~ 587 (643)
.++|..+ +..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 9999999 998888887765
No 479
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.41 E-value=1.5e-12 Score=138.15 Aligned_cols=151 Identities=18% Similarity=0.076 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC-------------------CCee--eCCcccCCce
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH-------------------APTR--LPPDFYPDRV 59 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~------------~~~~-------------------~~~~--~~~~~~~~~~ 59 (643)
++|+++|+.++|||||+++|+...-.... .+.. +.+. ....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754311110 1110 0000 1122335677
Q ss_pred eEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhh--
Q 006490 60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE-- 137 (643)
Q Consensus 60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~-- 137 (643)
.+.|+||||++++.......+..+|++|+|+|+......+.. +.+..++... ..++|+|+||+|+...... ..+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence 899999999988877777789999999999998765332221 2233344432 3468999999998753221 112
Q ss_pred -hhhhHHHHhhcc-cceEEEeCcccCCChhHH
Q 006490 138 -EVMGPIMQQFRE-IETCVECSATTMIQVPDV 167 (643)
Q Consensus 138 -~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 167 (643)
+....+...++. ..+++++||.+|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 222223333332 126899999999999863
No 480
>PLN03127 Elongation factor Tu; Provisional
Probab=99.41 E-value=3.5e-12 Score=136.09 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcC------CC--C---CC------CCCCCCCeeeCCcccCCceeEEEEeCCCCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATE------SV--P---EK------VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~------~~--~---~~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 70 (643)
..+++++|+++|+.++|||||+++|++. .. . .+ ..+++- ......+..++..+.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITI-ATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCcee-eeeEEEEcCCCeEEEEEECCCcc
Confidence 3567899999999999999999999732 10 0 00 111111 11223344567789999999998
Q ss_pred cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhc
Q 006490 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFR 148 (643)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~ 148 (643)
.+.......+..+|++++|+|++.....+. ...+..+... ++| +|+|+||+|+....... .....+..+...++
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777788999999999876543332 2355566666 788 57899999987532110 01112223333222
Q ss_pred ---ccceEEEeCcc---cCCC-------hhHHHHHHHHHH
Q 006490 149 ---EIETCVECSAT---TMIQ-------VPDVFYYAQKAV 175 (643)
Q Consensus 149 ---~~~~~~~~Sa~---~~~g-------i~~l~~~i~~~~ 175 (643)
...+++++||. +|.| +.+|++.+...+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 12467888876 4555 556666655543
No 481
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=6e-12 Score=109.50 Aligned_cols=107 Identities=26% Similarity=0.387 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhh-------hhhhccHHhh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL 495 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~~~~~~~~~ 495 (643)
+|+|+|.+|||||||+|+|++.....++. + ++.. .....+... ...+.++||+|-..- ....+....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~-~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRD-PVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSS-EEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceee-eeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999999976544444 3 3333 233444444 345568999994211 1112245566
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK 542 (643)
..+|++++|+|++++.. +....++..+. . +.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-~------~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK-N------KKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH-T------TSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh-c------CCCEEEEEcC
Confidence 89999999999888533 33445555553 2 8999999998
No 482
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.40 E-value=7.9e-12 Score=124.67 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=87.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC-Cccc----------ceEEEEEEcCCCcEEEEEEecCCchh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENY---------AP-TTGE----------QYAVNVVDQPGGNKKTLILQEIPEEG 484 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~---------~~-t~~~----------~~~~~~v~~~g~~~~~~i~d~~g~~~ 484 (643)
+|+|+|.+|+|||||+++|+...-.+.. .. |+.+ ........+..+..++.+|||+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6999999999999999999853222111 11 1111 12233333333567888999999987
Q ss_pred hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC
Q 006490 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 564 (643)
Q Consensus 485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 564 (643)
+... ...+++.+|++++|+|++++.. .....++...... ++|+++++||+|+..... .+..+++.+.++.
T Consensus 84 f~~~--~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSED--TYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLR------GIPIITFINKLDREGRDP-LELLDEIEEELGI 153 (267)
T ss_pred HHHH--HHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhc------CCCEEEEEECCccCCCCH-HHHHHHHHHHHCC
Confidence 7654 5678899999999999988644 2233444433332 799999999999865322 2345667777776
Q ss_pred C
Q 006490 565 E 565 (643)
Q Consensus 565 ~ 565 (643)
.
T Consensus 154 ~ 154 (267)
T cd04169 154 D 154 (267)
T ss_pred C
Confidence 5
No 483
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.39 E-value=1.1e-11 Score=119.88 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------------------CcccceEEEEEEcC------CCcEEEEEEecC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAP------------------TTGEQYAVNVVDQP------GGNKKTLILQEI 480 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~------------------t~~~~~~~~~v~~~------g~~~~~~i~d~~ 480 (643)
+|+|+|..++|||||+.+|+.......... |............. +....+.+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999986432211100 11111111112211 335677889999
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
|++.+... ...+++.+|++++|+|++++.+.+. ...+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~--~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSE--VTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHH--HHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence 99888776 7888999999999999999876543 3333333332 78999999999986
No 484
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.39 E-value=1.4e-11 Score=125.28 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=96.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CcEEEEEEecCCc-
Q 006490 426 CLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIPE- 482 (643)
Q Consensus 426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~-~~~~~~~~v~-------------------~~g-~~~~~~i~d~~g~- 482 (643)
|+|+|.||||||||+|+|++........| || ........+. ..| ....+.+||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999999875432223 22 2222111110 122 2245789999996
Q ss_pred ---hhhhhh-hccHHhhccCCEEEEEEeCCC---------------hh-hHHHH----HHHHH--------HHH------
Q 006490 483 ---EGVKKI-LSNKEALASCDVTIFVYDSSD---------------EY-SWKRT----KELLV--------EVA------ 524 (643)
Q Consensus 483 ---~~~~~~-~~~~~~~~~ad~illv~D~s~---------------~~-s~~~~----~~~~~--------~i~------ 524 (643)
+....+ .+....+++||++++|+|++. |. .++.+ ..|.. .+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333 124557999999999999973 11 11111 11100 000
Q ss_pred --------------------------HhcC-C------------------CCCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 006490 525 --------------------------RLGE-D------------------SGYGVPCLLIASKDDLKPYTMAVQDSARVT 559 (643)
Q Consensus 525 --------------------------~~~~-~------------------~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~ 559 (643)
+... . ....+|+|+|+||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 0000 0 011579999999999864322 222344
Q ss_pred HHhCCCCcEEeeeccC-CHHHHHH-HHHHHHh
Q 006490 560 QELGIEPPIPVSMKSK-DLNNVFS-RIIWAAE 589 (643)
Q Consensus 560 ~~~~~~~~~~vSa~~g-~i~~l~~-~l~~~~~ 589 (643)
...+..+++++||+.+ +++++.+ .+.+.+.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 4455556999999999 9999998 5888764
No 485
>PRK00049 elongation factor Tu; Reviewed
Probab=99.39 E-value=1.3e-11 Score=130.50 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=102.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCC------CCCC----------CCCcccceEEEEEEcCCCcEEEEEEecCCchh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPF------SENY----------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~------~~~~----------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~ 484 (643)
+..++|+++|..++|||||+++|++... ...+ ...++.+.....+.. ....+.++||+|+..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~--~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET--EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC--CCeEEEEEECCCHHH
Confidence 4568999999999999999999997311 0010 011111122222222 345677899999876
Q ss_pred hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCCCCcccc----HHHHHHHH
Q 006490 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMA----VQDSARVT 559 (643)
Q Consensus 485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~~~ 559 (643)
+..- ....+..+|++++|+|+.++.. .+..+.+..+... ++|++ +++||+|+...... ..++..+.
T Consensus 88 f~~~--~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 88 YVKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHH--HHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 6543 5667889999999999988644 3344444444444 78976 58999999753222 23455555
Q ss_pred HHhCC----CCcEEeeeccC-C----------HHHHHHHHHHHHh
Q 006490 560 QELGI----EPPIPVSMKSK-D----------LNNVFSRIIWAAE 589 (643)
Q Consensus 560 ~~~~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~ 589 (643)
..+++ .+++++||++| + +..+++.|...+.
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 55555 36899999986 3 4677777766543
No 486
>PLN03126 Elongation factor Tu; Provisional
Probab=99.39 E-value=3.4e-12 Score=136.78 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=100.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC------CCC-----CC---CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP------EKV-----PP---VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~------~~~-----~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
..++.++|+++|++++|||||+++|+..... ..+ .+ ..+.+. ....+..++..+.++||||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3567899999999999999999999963210 000 00 000110 1122445677899999999998
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCcc-chhhhhhhHHHHhhc-
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR- 148 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~- 148 (643)
|.......+..+|++++|+|+......+. .+++..+... ++| +|+++||+|+...... ....+.+..+...++
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 88777788889999999999886543332 2455666666 788 7789999998753211 012223344444432
Q ss_pred --ccceEEEeCcccCCCh
Q 006490 149 --EIETCVECSATTMIQV 164 (643)
Q Consensus 149 --~~~~~~~~Sa~~~~gi 164 (643)
...+++++||.+|.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 1247899999988654
No 487
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=1.2e-11 Score=131.69 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=77.5
Q ss_pred eeEEEEeCCCCCcc-----hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490 59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (643)
Q Consensus 59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~ 133 (643)
..+.|+||||.... ...+...+.++|+|+||+|++...+..+. .+.+.+++...+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 45689999998652 12344689999999999999876555543 467777766333699999999998643221
Q ss_pred chhhhhhhHHHH-h----hcccceEEEeCcccCCChhHHHHHHHHH
Q 006490 134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 134 ~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
..+.+..+.. . ......++++||+.|.|++++++.+...
T Consensus 308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 1222333322 1 1123468999999999999999988764
No 488
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.38 E-value=5.2e-12 Score=141.88 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=96.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------CCccc---------------------ceEEEEEE
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA------------PTTGE---------------------QYAVNVVD 466 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~------------~t~~~---------------------~~~~~~v~ 466 (643)
.+..++|+|+|.+|+|||||+++|+.....+... .++++ +.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3456899999999999999999999865544311 12111 11122233
Q ss_pred cCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
+ ....+.++||+|++.+... ....+..+|++++|+|++++.. .+..+....+.... ..|+++|+||+|+.
T Consensus 101 ~--~~~~~~liDtPG~~~f~~~--~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~~-----~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 T--PKRKFIVADTPGHEQYTRN--MVTGASTADLAIILVDARKGVL-TQTRRHSFIASLLG-----IRHVVLAVNKMDLV 170 (632)
T ss_pred c--CCceEEEEECCChHHHHHH--HHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHhC-----CCeEEEEEEecccc
Confidence 3 3346678999998876443 4557899999999999987643 22222222222221 35788999999997
Q ss_pred Cc-cc-c---HHHHHHHHHHhCCC--CcEEeeeccC-CHHH
Q 006490 547 PY-TM-A---VQDSARVTQELGIE--PPIPVSMKSK-DLNN 579 (643)
Q Consensus 547 ~~-~~-~---~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~ 579 (643)
+. .. . ..+...+.+.+++. +++++||++| |+++
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 42 11 1 23334444566764 5899999999 9874
No 489
>PLN03127 Elongation factor Tu; Provisional
Probab=99.38 E-value=1.6e-11 Score=131.11 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=102.1
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCC----------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA----------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~----------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~ 483 (643)
.+..++|+++|..++|||||+++|.+ ..+...+. ..++.+.....+.. ....+.++||+|+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET--AKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC--CCeEEEEEECCCcc
Confidence 45678999999999999999999973 22221110 11222222233333 44577889999987
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccccH----HHHHHH
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARV 558 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~~----~~~~~~ 558 (643)
.+..- ....+..+|++++|+|++++.. .+..+.+..+... ++| +|+++||+|+.+..... ++..++
T Consensus 136 ~f~~~--~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 136 DYVKN--MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred chHHH--HHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 66443 4556678999999999987644 3334444444444 789 57889999998633322 233344
Q ss_pred HHHhCC----CCcEEeeec---cC-C-------HHHHHHHHHHHHh
Q 006490 559 TQELGI----EPPIPVSMK---SK-D-------LNNVFSRIIWAAE 589 (643)
Q Consensus 559 ~~~~~~----~~~~~vSa~---~g-~-------i~~l~~~l~~~~~ 589 (643)
...+++ .|++++||. +| | +.+|++.+.+.+.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 444444 257888876 44 5 6778888777654
No 490
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.38 E-value=3.1e-12 Score=143.72 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=99.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCCC-C------------------Ce--eeCCcc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPVH-A------------------PT--RLPPDF 54 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~------------~~~~~-~------------------~~--~~~~~~ 54 (643)
..+..++|+|+|++|+|||||+++|+...-... ..+++ . .+ .....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 456678999999999999999999997542111 11110 0 00 011233
Q ss_pred cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~ 134 (643)
..++..+.|+||||++.+.......+..+|++++|+|++.....+.. ..+..+.... .+|+|+|+||+|+......
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~~-~~~iivvvNK~D~~~~~~~- 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLLG-IRHVVLAVNKMDLVDYDQE- 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHhC-CCeEEEEEEecccccchhH-
Confidence 35677899999999887766666778999999999998765332211 2333344442 3678999999998752221
Q ss_pred hhhhh---hhHHHHhhcc-cceEEEeCcccCCChhH
Q 006490 135 SLEEV---MGPIMQQFRE-IETCVECSATTMIQVPD 166 (643)
Q Consensus 135 ~~~~~---~~~~~~~~~~-~~~~~~~Sa~~~~gi~~ 166 (643)
..++. +..+..+++. ..+++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12222 2223334332 12589999999999984
No 491
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.37 E-value=2e-11 Score=128.00 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCc----------------------cc-CCceeEEEEeCCC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPD----------------------FY-PDRVPVTIIDTSS 68 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~----------------------~~-~~~~~~~i~Dt~G 68 (643)
++|+|||.||||||||+|+|++..+.. ++|.++........ .. .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999887532 35432211111100 00 1236789999999
Q ss_pred CCc----chhhhHHh---hccCCEEEEEEECC
Q 006490 69 SLE----NKGKLNEE---LKRADAVVLTYACN 93 (643)
Q Consensus 69 ~~~----~~~~~~~~---~~~ad~il~v~d~~ 93 (643)
+.. ...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 753 22333344 89999999999986
No 492
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.37 E-value=2.3e-12 Score=128.65 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCC-------------CcccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS-----ENYAP-------------TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~-----~~~~~-------------t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~ 486 (643)
+|+|+|.+|+|||||+++|+...-. .+... .++.......+.+ +..++.++||+|...+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 4899999999999999999742111 11111 0111112223333 34677789999987665
Q ss_pred hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-
Q 006490 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 565 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~- 565 (643)
.. +..+++.+|++++|+|++++.. ......+..+... ++|+++++||+|+.... .....+++.+.++..
T Consensus 79 ~~--~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 79 IE--VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADRY------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP 148 (270)
T ss_pred HH--HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence 54 6788999999999999988654 2234444444444 89999999999987522 233455555555543
Q ss_pred --CcEEeeeccC--CHHHHH
Q 006490 566 --PPIPVSMKSK--DLNNVF 581 (643)
Q Consensus 566 --~~~~vSa~~g--~i~~l~ 581 (643)
..+++|+..+ |+-+++
T Consensus 149 ~~~~~Pisa~~~f~g~vd~~ 168 (270)
T cd01886 149 VPLQLPIGEEDDFRGVVDLI 168 (270)
T ss_pred eEEEeccccCCCceEEEEcc
Confidence 3588898865 554443
No 493
>PRK12288 GTPase RsgA; Reviewed
Probab=99.37 E-value=9.6e-12 Score=127.99 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=60.1
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
..++|.+++|++++...++..+. +|+..+... ++|+++|+||+|+..........+ .......++ .+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~~--~i~~VIVlNK~DL~~~~~~~~~~~-~~~~y~~~g--~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID-RYLVACETL--GIEPLIVLNKIDLLDDEGRAFVNE-QLDIYRNIG--YRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCcHHHHHHHH-HHHHHHhCC--CeEEEEeCC
Confidence 45689999999998888888887 477666544 799999999999975421101111 111222333 378999999
Q ss_pred cCCChhHHHHH
Q 006490 160 TMIQVPDVFYY 170 (643)
Q Consensus 160 ~~~gi~~l~~~ 170 (643)
++.|+++|++.
T Consensus 192 tg~GideL~~~ 202 (347)
T PRK12288 192 TGEGLEELEAA 202 (347)
T ss_pred CCcCHHHHHHH
Confidence 99999988763
No 494
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.36 E-value=4.1e-11 Score=125.63 Aligned_cols=189 Identities=21% Similarity=0.188 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-Cc-ccceEEEEEE-------------------cCC-CcEEEEEEecCC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP-TT-GEQYAVNVVD-------------------QPG-GNKKTLILQEIP 481 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~-~~~~~~~~v~-------------------~~g-~~~~~~i~d~~g 481 (643)
++|+|+|.||||||||+|+|++........| +| ........+. ..| ....+.++|++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999999876542223 32 2222111110 111 123567899999
Q ss_pred c----hhhhhh-hccHHhhccCCEEEEEEeCCC---------------hh-hHHHH----HHH-----------------
Q 006490 482 E----EGVKKI-LSNKEALASCDVTIFVYDSSD---------------EY-SWKRT----KEL----------------- 519 (643)
Q Consensus 482 ~----~~~~~~-~~~~~~~~~ad~illv~D~s~---------------~~-s~~~~----~~~----------------- 519 (643)
. .....+ .+....++.||++++|+|+.. |. .++.+ ..|
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3 222222 124566899999999999972 11 11100 000
Q ss_pred -----------------------HHHHHH-hcCC------------------CCCCCcEEEEEeCCCCCCccccHHHHHH
Q 006490 520 -----------------------LVEVAR-LGED------------------SGYGVPCLLIASKDDLKPYTMAVQDSAR 557 (643)
Q Consensus 520 -----------------------~~~i~~-~~~~------------------~~~~~pvilv~NK~Dl~~~~~~~~~~~~ 557 (643)
+.++.+ .... ....+|+++|+||+|+..... ....
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~---~l~~ 238 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE---NIER 238 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH---HHHH
Confidence 000000 0000 012689999999999764221 2333
Q ss_pred HHHHhCCCCcEEeeeccC-CHHH-HHHHHHHHH-hCCCCCCCCcccccchhhhhhhhchhhHH
Q 006490 558 VTQELGIEPPIPVSMKSK-DLNN-VFSRIIWAA-EHPHLNIPETETGRNRKRYRHLVNSSLVF 617 (643)
Q Consensus 558 ~~~~~~~~~~~~vSa~~g-~i~~-l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 617 (643)
+.+. +...++++||+.+ ++++ +.+.+.+.+ ..+..++++..+....+ ..+.++..+..
T Consensus 239 i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r-~~E~IRk~l~~ 299 (396)
T PRK09602 239 LKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK-ALEYIREVLKK 299 (396)
T ss_pred HHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH-HHHHHHHHHHH
Confidence 3333 5566899999999 9999 777777765 34555555555543333 55555544433
No 495
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.36 E-value=9e-12 Score=132.27 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCC---------------------cccceEEEEEEcCCC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENY------------APT---------------------TGEQYAVNVVDQPGG 470 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t---------------------~~~~~~~~~v~~~g~ 470 (643)
++|+++|..++|||||+++|+........ ..+ .+.+.....+.+ .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 47999999999999999999854322111 000 011222233333 3
Q ss_pred cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (643)
Q Consensus 471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~ 550 (643)
..++.++||+|++.+-.. ....+..+|++++|+|++.+..-+ ..+.+..+... . ..++++++||+|+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~--~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~-~----~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRN--MATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL-G----IRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred CeEEEEEeCCCHHHHHHH--HHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc-C----CCcEEEEEEecccccchH
Confidence 457789999999877543 456789999999999998764322 22222222222 1 246889999999975221
Q ss_pred -c----HHHHHHHHHHhCCC--CcEEeeeccC-CHHH
Q 006490 551 -A----VQDSARVTQELGIE--PPIPVSMKSK-DLNN 579 (643)
Q Consensus 551 -~----~~~~~~~~~~~~~~--~~~~vSa~~g-~i~~ 579 (643)
. .+....+.+.+++. +++++||++| |+++
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1 22333444555653 5899999999 9875
No 496
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.36 E-value=9.2e-12 Score=134.20 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=94.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCc---------------------ccceEEEEEE
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTT---------------------GEQYAVNVVD 466 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t~---------------------~~~~~~~~v~ 466 (643)
.+..++|+|+|.+++|||||+++|+........ ..++ +.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356699999999999999999999865433221 0011 0122222233
Q ss_pred cCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 467 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 467 ~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
+ ....+.++||+|++.+..- ....+..+|++++|+|++++..-+ ..+....+... . ..|+|+|+||+|+.
T Consensus 104 ~--~~~~i~~iDTPGh~~f~~~--~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~l-g----~~~iIvvvNKiD~~ 173 (474)
T PRK05124 104 T--EKRKFIIADTPGHEQYTRN--MATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLL-G----IKHLVVAVNKMDLV 173 (474)
T ss_pred c--CCcEEEEEECCCcHHHHHH--HHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHh-C----CCceEEEEEeeccc
Confidence 3 3456788999998776543 455679999999999998764311 11211112222 1 24789999999997
Q ss_pred Cccc-c----HHHHHHHHHHhC---CCCcEEeeeccC-CHHHH
Q 006490 547 PYTM-A----VQDSARVTQELG---IEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 547 ~~~~-~----~~~~~~~~~~~~---~~~~~~vSa~~g-~i~~l 580 (643)
.... . .+....+.+..+ ..+++++||++| |++++
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 4221 1 222333334444 236899999999 98764
No 497
>PRK09866 hypothetical protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=131.13 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=71.7
Q ss_pred EEEEEEecCCchhh-----hhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 472 KKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 472 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
..++++||+|-..- ... ....+..||+|++|+|++++.+.. .......+.+... +.|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~--M~eqL~eADvVLFVVDat~~~s~~-DeeIlk~Lkk~~K----~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKM--LNQQLARASAVLAVLDYTQLKSIS-DEEVREAILAVGQ----SVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHH--HHHHHhhCCEEEEEEeCCCCCChh-HHHHHHHHHhcCC----CCCEEEEEEcccCC
Confidence 35678999996431 222 345799999999999998864423 2344444544311 25999999999986
Q ss_pred Cccc-cHHHHHHHHH----H--hCCCCcEEeeeccC-CHHHHHHHHHH
Q 006490 547 PYTM-AVQDSARVTQ----E--LGIEPPIPVSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 547 ~~~~-~~~~~~~~~~----~--~~~~~~~~vSa~~g-~i~~l~~~l~~ 586 (643)
+... ..+.+..+.. . ..+..+++|||++| |++.+++.|..
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4221 1233333322 1 22446999999999 99999999887
No 498
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=4.8e-12 Score=116.50 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc-cCCceeEEEEeCCCCCcchhhhHH---hhccCCEEEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVVLT 89 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~il~v 89 (643)
.|+|+|++|+|||+|+.+|..+............ ....+ ...+..+.++|+||.++.....-. +...+.+||||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n--~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfv 82 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENN--IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFV 82 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEE--EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCC--ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEE
Confidence 5999999999999999999999765554443111 22222 345667999999999877654443 48899999999
Q ss_pred EECCC-cccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCC
Q 006490 90 YACNQ-QSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDH 131 (643)
Q Consensus 90 ~d~~~-~~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~ 131 (643)
+|.+. .....++.+++...+.. .....|+++++||.|+....
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99863 44566666666666533 23478999999999997654
No 499
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.34 E-value=3.3e-11 Score=130.95 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=78.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC--CC-------CC-Cc----------ccceEEEEEEcCCCcEEEEEEecCCc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSE--NY-------AP-TT----------GEQYAVNVVDQPGGNKKTLILQEIPE 482 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~--~~-------~~-t~----------~~~~~~~~v~~~g~~~~~~i~d~~g~ 482 (643)
..+|+|+|.+|+|||||+++|+...-.+ .. .. ++ +..+......+..+...+.+|||+|+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 3589999999999999999997421110 00 00 10 11122222233334567888999999
Q ss_pred hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
..+... ...+++.+|++++|+|++++.. .....++...... ++|+++++||+|+..
T Consensus 90 ~df~~~--~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~------~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 EDFSED--TYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLR------DTPIFTFINKLDRDG 145 (526)
T ss_pred hhhHHH--HHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence 877654 6778899999999999998654 2334444444333 899999999999864
No 500
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.33 E-value=6.2e-12 Score=134.34 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=100.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCCCC---CCee--eCCcccC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VPPVH---APTR--LPPDFYP 56 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--------------------------~~~~~---~~~~--~~~~~~~ 56 (643)
..+++++|+++|+.++|||||+.+|+...-..+ ..... +.+- ....+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 357789999999999999999999975321000 00000 0000 1122345
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHH-------HHHHHHHHHHHhcCCCCc-EEEEEecccCC
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS-------RLSSYWLPELRRLEIKVP-IIVAGCKLDLR 128 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~p-vilv~NK~D~~ 128 (643)
++..++++||||+++|.......+..+|++|+|+|+++. .++ ... +.+..++.. ++| +|+|+||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~-eh~~~~~~~--gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTR-EHALLAFTL--GVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHH-HHHHHHHHc--CCCcEEEEEEcccCC
Confidence 678899999999999988888999999999999998863 121 222 233344444 674 78899999976
Q ss_pred CCCc-cchh---hhhhhHHHHhhcc---cceEEEeCcccCCChhH
Q 006490 129 GDHN-ATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPD 166 (643)
Q Consensus 129 ~~~~-~~~~---~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~ 166 (643)
.... .... .+.++.+.++.+. ..+++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2110 0012 2334444444441 13689999999999864
Done!