Query 006490
Match_columns 643
No_of_seqs 517 out of 4805
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 02:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 1E-40 3.4E-45 358.1 21.7 325 12-595 3-354 (436)
2 1mky_A Probable GTP-binding pr 100.0 1.8E-38 6E-43 340.9 29.4 330 14-595 3-360 (439)
3 4dcu_A GTP-binding protein ENG 100.0 1.8E-39 6.2E-44 350.3 21.4 329 9-596 20-375 (456)
4 4dkx_A RAS-related protein RAB 100.0 6.3E-28 2.1E-32 232.7 18.6 163 422-590 12-176 (216)
5 4dkx_A RAS-related protein RAB 100.0 6.2E-28 2.1E-32 232.7 16.4 172 1-177 1-176 (216)
6 3q3j_B RHO-related GTP-binding 99.9 8.4E-25 2.9E-29 211.6 18.2 168 419-593 23-206 (214)
7 2atx_A Small GTP binding prote 99.9 1.4E-24 5E-29 206.5 19.0 167 9-177 15-193 (194)
8 2hup_A RAS-related protein RAB 99.9 1.3E-24 4.6E-29 208.1 18.8 167 418-589 24-192 (201)
9 3cbq_A GTP-binding protein REM 99.9 1.9E-24 6.5E-29 205.9 19.6 167 420-591 20-189 (195)
10 3reg_A RHO-like small GTPase; 99.9 9.1E-25 3.1E-29 208.0 16.9 170 9-179 20-190 (194)
11 3tw8_B RAS-related protein RAB 99.9 3.2E-24 1.1E-28 201.3 20.1 163 420-589 6-170 (181)
12 3t5g_A GTP-binding protein RHE 99.9 1.9E-24 6.4E-29 203.2 18.5 167 422-594 5-173 (181)
13 1g16_A RAS-related protein SEC 99.9 3E-24 1E-28 199.3 19.6 162 422-589 2-164 (170)
14 2g6b_A RAS-related protein RAB 99.9 5E-24 1.7E-28 200.0 20.5 167 421-593 8-177 (180)
15 3ihw_A Centg3; RAS, centaurin, 99.9 1.7E-24 5.9E-29 204.2 17.2 163 7-176 15-179 (184)
16 2ew1_A RAS-related protein RAB 99.9 3.3E-24 1.1E-28 205.2 19.3 164 420-589 23-188 (201)
17 3tkl_A RAS-related protein RAB 99.9 7E-24 2.4E-28 201.9 21.2 164 421-590 14-179 (196)
18 3kkq_A RAS-related protein M-R 99.9 5.9E-24 2E-28 200.1 20.4 164 420-589 15-181 (183)
19 3q3j_B RHO-related GTP-binding 99.9 1.1E-24 3.6E-29 210.9 15.5 170 8-180 23-206 (214)
20 3reg_A RHO-like small GTPase; 99.9 5.2E-24 1.8E-28 202.7 20.1 166 420-592 20-190 (194)
21 2a5j_A RAS-related protein RAB 99.9 5.5E-24 1.9E-28 202.0 19.7 164 420-589 18-183 (191)
22 1z08_A RAS-related protein RAB 99.9 4.4E-24 1.5E-28 198.3 18.6 163 421-589 4-168 (170)
23 3q85_A GTP-binding protein REM 99.9 3.8E-24 1.3E-28 198.6 18.0 163 423-589 2-166 (169)
24 2efe_B Small GTP-binding prote 99.9 9E-24 3.1E-28 198.4 20.6 163 421-589 10-174 (181)
25 3bwd_D RAC-like GTP-binding pr 99.9 1.3E-24 4.4E-29 204.4 14.8 168 9-177 5-181 (182)
26 1z0f_A RAB14, member RAS oncog 99.9 8.2E-24 2.8E-28 198.1 20.2 163 421-589 13-177 (179)
27 3oes_A GTPase rhebl1; small GT 99.9 2E-24 6.8E-29 206.9 16.1 171 416-592 17-189 (201)
28 1z2a_A RAS-related protein RAB 99.9 6.1E-24 2.1E-28 196.8 18.6 161 422-589 4-166 (168)
29 1r2q_A RAS-related protein RAB 99.9 5.9E-24 2E-28 197.2 18.6 161 422-588 5-167 (170)
30 2gf9_A RAS-related protein RAB 99.9 7.3E-24 2.5E-28 200.8 19.4 164 420-589 19-184 (189)
31 1c1y_A RAS-related protein RAP 99.9 4.3E-24 1.5E-28 197.6 17.2 161 11-175 2-165 (167)
32 1z0j_A RAB-22, RAS-related pro 99.9 1.2E-23 4.3E-28 195.1 20.3 162 422-589 5-168 (170)
33 1c1y_A RAS-related protein RAP 99.9 9.7E-24 3.3E-28 195.2 19.3 162 423-589 3-166 (167)
34 2iwr_A Centaurin gamma 1; ANK 99.9 4.3E-24 1.5E-28 200.1 17.1 159 9-176 4-168 (178)
35 2il1_A RAB12; G-protein, GDP, 99.9 5.6E-24 1.9E-28 202.2 17.8 165 420-589 23-189 (192)
36 1m7b_A RND3/RHOE small GTP-bin 99.9 2.3E-24 8E-29 203.3 15.0 165 9-176 4-182 (184)
37 2fu5_C RAS-related protein RAB 99.9 2.1E-24 7.3E-29 203.2 14.7 163 421-589 6-170 (183)
38 2g3y_A GTP-binding protein GEM 99.9 1E-23 3.4E-28 202.7 19.6 164 421-589 35-202 (211)
39 2bcg_Y Protein YP2, GTP-bindin 99.9 1.5E-23 5.1E-28 201.5 20.8 163 421-589 6-170 (206)
40 1zbd_A Rabphilin-3A; G protein 99.9 1.7E-23 5.9E-28 200.6 21.1 163 421-589 6-170 (203)
41 1mh1_A RAC1; GTP-binding, GTPa 99.9 5E-24 1.7E-28 201.0 17.1 168 10-179 3-182 (186)
42 3dz8_A RAS-related protein RAB 99.9 2.7E-24 9.3E-29 204.1 15.2 164 420-589 20-185 (191)
43 1kao_A RAP2A; GTP-binding prot 99.9 7.9E-24 2.7E-28 195.6 17.9 161 423-589 3-165 (167)
44 1ek0_A Protein (GTP-binding pr 99.9 9.4E-24 3.2E-28 195.8 18.4 160 423-588 3-167 (170)
45 2atx_A Small GTP binding prote 99.9 1.6E-23 5.5E-28 199.2 20.4 163 421-590 16-193 (194)
46 2oil_A CATX-8, RAS-related pro 99.9 9.7E-24 3.3E-28 200.6 18.8 165 419-589 21-187 (193)
47 2fg5_A RAB-22B, RAS-related pr 99.9 9.8E-24 3.4E-28 200.5 18.8 163 421-589 21-185 (192)
48 3q72_A GTP-binding protein RAD 99.9 4.9E-24 1.7E-28 197.2 16.3 160 12-176 2-163 (166)
49 2bme_A RAB4A, RAS-related prot 99.9 9.9E-24 3.4E-28 199.1 18.7 163 421-589 8-172 (186)
50 3cph_A RAS-related protein SEC 99.9 1.7E-23 5.7E-28 202.2 20.6 164 420-589 17-181 (213)
51 2o52_A RAS-related protein RAB 99.9 7.5E-24 2.6E-28 202.7 17.7 164 420-589 22-187 (200)
52 2j0v_A RAC-like GTP-binding pr 99.9 4.6E-24 1.6E-28 206.1 16.3 170 9-179 6-182 (212)
53 2nzj_A GTP-binding protein REM 99.9 1.7E-23 5.7E-28 195.3 19.6 162 422-589 3-168 (175)
54 2fn4_A P23, RAS-related protei 99.9 9.5E-24 3.3E-28 198.1 18.0 164 421-590 7-172 (181)
55 1x3s_A RAS-related protein RAB 99.9 1.3E-23 4.5E-28 199.8 19.2 164 422-590 14-178 (195)
56 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.4E-23 8.1E-28 194.7 20.6 167 421-589 5-173 (177)
57 4dsu_A GTPase KRAS, isoform 2B 99.9 2.4E-23 8.1E-28 196.9 20.7 162 422-589 3-165 (189)
58 3kkq_A RAS-related protein M-R 99.9 1.1E-23 3.8E-28 198.3 18.2 164 8-176 14-181 (183)
59 3c5c_A RAS-like protein 12; GD 99.9 5E-24 1.7E-28 201.6 15.7 162 9-176 18-185 (187)
60 2ew1_A RAS-related protein RAB 99.9 5E-24 1.7E-28 203.9 15.9 165 7-176 21-188 (201)
61 3clv_A RAB5 protein, putative; 99.9 3.4E-23 1.2E-27 198.5 21.7 161 421-589 5-203 (208)
62 1u8z_A RAS-related protein RAL 99.9 8.8E-24 3E-28 195.5 17.0 162 10-176 2-166 (168)
63 2hxs_A RAB-26, RAS-related pro 99.9 5E-24 1.7E-28 199.5 15.3 166 422-591 5-174 (178)
64 1gwn_A RHO-related GTP-binding 99.9 4E-24 1.4E-28 205.3 14.7 165 9-176 25-203 (205)
65 3bc1_A RAS-related protein RAB 99.9 4.2E-23 1.4E-27 196.1 21.6 164 421-589 9-184 (195)
66 3ihw_A Centg3; RAS, centaurin, 99.9 1.7E-23 6E-28 197.3 18.7 160 419-589 16-179 (184)
67 2q3h_A RAS homolog gene family 99.9 8.5E-24 2.9E-28 202.4 16.8 166 9-176 17-194 (201)
68 2p5s_A RAS and EF-hand domain 99.9 1.2E-23 4.1E-28 201.1 17.7 164 420-589 25-196 (199)
69 3tw8_B RAS-related protein RAB 99.9 7.2E-24 2.5E-28 198.9 15.7 164 8-176 5-170 (181)
70 2nzj_A GTP-binding protein REM 99.9 1.7E-23 5.9E-28 195.2 18.2 162 10-176 2-168 (175)
71 2j1l_A RHO-related GTP-binding 99.9 4.8E-24 1.6E-28 206.4 14.8 167 10-177 32-209 (214)
72 3t5g_A GTP-binding protein RHE 99.9 8.7E-24 3E-28 198.6 16.1 165 10-179 4-171 (181)
73 3q72_A GTP-binding protein RAD 99.9 1.8E-23 6.2E-28 193.3 18.0 160 423-589 2-163 (166)
74 1z0f_A RAB14, member RAS oncog 99.9 1.2E-23 4.1E-28 197.0 16.9 163 9-176 12-177 (179)
75 2y8e_A RAB-protein 6, GH09086P 99.9 1.8E-23 6.1E-28 195.8 18.0 162 422-589 13-176 (179)
76 1u8z_A RAS-related protein RAL 99.9 2.9E-23 1E-27 192.0 19.2 162 422-589 3-166 (168)
77 2gf9_A RAS-related protein RAB 99.9 1.7E-23 5.9E-28 198.2 18.0 162 10-176 20-184 (189)
78 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-23 6E-28 200.3 18.2 165 10-176 23-199 (201)
79 2a5j_A RAS-related protein RAB 99.9 1.3E-23 4.4E-28 199.5 17.0 165 7-176 16-183 (191)
80 2hup_A RAS-related protein RAB 99.9 7.7E-24 2.6E-28 202.8 15.4 165 9-177 26-193 (201)
81 4gzl_A RAS-related C3 botulinu 99.9 4.6E-24 1.6E-28 204.9 13.9 166 9-175 27-203 (204)
82 3cpj_B GTP-binding protein YPT 99.9 1.9E-23 6.3E-28 203.6 18.3 164 421-590 11-176 (223)
83 3c5c_A RAS-like protein 12; GD 99.9 1.9E-23 6.4E-28 197.7 17.7 164 421-589 19-185 (187)
84 1m7b_A RND3/RHOE small GTP-bin 99.9 1.9E-23 6.6E-28 197.0 17.7 162 421-589 5-182 (184)
85 3oes_A GTPase rhebl1; small GT 99.9 6.7E-24 2.3E-28 203.2 14.7 167 7-178 19-188 (201)
86 1z06_A RAS-related protein RAB 99.9 3.6E-23 1.2E-27 196.0 19.5 165 420-589 17-187 (189)
87 2j0v_A RAC-like GTP-binding pr 99.9 1.4E-23 4.9E-28 202.6 17.0 165 421-592 7-182 (212)
88 1z0j_A RAB-22, RAS-related pro 99.9 1.6E-23 5.6E-28 194.3 16.6 162 10-176 4-168 (170)
89 1kao_A RAP2A; GTP-binding prot 99.9 1.3E-23 4.3E-28 194.3 15.7 160 11-175 2-164 (167)
90 2bov_A RAla, RAS-related prote 99.9 4.5E-23 1.6E-27 198.0 20.2 164 420-589 11-176 (206)
91 2a9k_A RAS-related protein RAL 99.9 1.6E-23 5.6E-28 197.5 16.8 164 8-176 14-180 (187)
92 2g3y_A GTP-binding protein GEM 99.9 1.6E-23 5.4E-28 201.4 16.6 163 9-176 34-202 (211)
93 3cbq_A GTP-binding protein REM 99.9 1.6E-23 5.6E-28 199.4 16.6 164 9-177 20-188 (195)
94 1r2q_A RAS-related protein RAB 99.9 1.6E-23 5.6E-28 194.2 16.2 161 10-175 4-167 (170)
95 2iwr_A Centaurin gamma 1; ANK 99.9 4.4E-23 1.5E-27 193.3 19.2 159 422-589 6-168 (178)
96 2bov_A RAla, RAS-related prote 99.9 2.7E-23 9.1E-28 199.6 18.2 164 8-176 10-176 (206)
97 1vg8_A RAS-related protein RAB 99.9 5E-23 1.7E-27 197.9 20.0 167 421-589 6-174 (207)
98 2il1_A RAB12; G-protein, GDP, 99.9 9.2E-24 3.2E-28 200.7 14.6 164 9-176 23-189 (192)
99 1z2a_A RAS-related protein RAB 99.9 1.6E-23 5.3E-28 194.0 15.7 162 10-176 3-166 (168)
100 1ek0_A Protein (GTP-binding pr 99.9 1.8E-23 6.2E-28 193.9 16.1 160 11-175 2-167 (170)
101 1ky3_A GTP-binding protein YPT 99.9 5.1E-23 1.8E-27 193.2 19.3 167 421-589 6-177 (182)
102 3tkl_A RAS-related protein RAB 99.9 3.1E-23 1.1E-27 197.5 17.9 163 10-177 14-179 (196)
103 1z08_A RAS-related protein RAB 99.9 1.6E-23 5.6E-28 194.4 15.6 162 10-176 4-168 (170)
104 2fv8_A H6, RHO-related GTP-bin 99.9 2.6E-23 8.9E-28 200.1 17.5 167 10-178 23-201 (207)
105 2fg5_A RAB-22B, RAS-related pr 99.9 1.8E-23 6.2E-28 198.6 16.2 163 9-176 20-185 (192)
106 2oil_A CATX-8, RAS-related pro 99.9 2.5E-23 8.5E-28 197.8 17.0 163 9-176 22-187 (193)
107 2efe_B Small GTP-binding prote 99.9 4.6E-23 1.6E-27 193.5 18.4 164 9-177 9-175 (181)
108 1zbd_A Rabphilin-3A; G protein 99.9 3.9E-23 1.3E-27 198.1 18.3 163 9-176 5-170 (203)
109 2hxs_A RAB-26, RAS-related pro 99.9 9.1E-24 3.1E-28 197.8 13.5 165 9-178 3-174 (178)
110 2q3h_A RAS homolog gene family 99.9 3.2E-23 1.1E-27 198.4 17.5 164 419-589 16-194 (201)
111 2ce2_X GTPase HRAS; signaling 99.9 1E-22 3.5E-27 187.8 20.2 161 423-589 3-164 (166)
112 3q85_A GTP-binding protein REM 99.9 1.5E-23 5.1E-28 194.6 14.6 160 12-176 2-166 (169)
113 2cjw_A GTP-binding protein GEM 99.9 5.5E-23 1.9E-27 195.3 18.5 163 422-589 5-171 (192)
114 2a9k_A RAS-related protein RAL 99.9 5.9E-23 2E-27 193.7 18.6 163 421-589 16-180 (187)
115 3bc1_A RAS-related protein RAB 99.9 3.9E-23 1.3E-27 196.3 17.5 168 4-176 3-184 (195)
116 3bwd_D RAC-like GTP-binding pr 99.9 7E-24 2.4E-28 199.3 12.1 163 421-590 6-181 (182)
117 2f7s_A C25KG, RAS-related prot 99.9 2.4E-23 8.4E-28 201.8 16.2 165 420-589 22-198 (217)
118 2g6b_A RAS-related protein RAB 99.9 5.4E-23 1.8E-27 192.9 18.0 166 7-177 5-174 (180)
119 1mh1_A RAC1; GTP-binding, GTPa 99.9 5.9E-23 2E-27 193.6 18.1 163 422-591 4-181 (186)
120 2y8e_A RAB-protein 6, GH09086P 99.9 2.2E-23 7.5E-28 195.2 14.9 170 1-175 3-175 (179)
121 2j1l_A RHO-related GTP-binding 99.9 3E-23 1E-27 200.7 16.4 164 421-591 32-210 (214)
122 1gwn_A RHO-related GTP-binding 99.9 4.8E-23 1.6E-27 197.8 17.5 162 421-589 26-203 (205)
123 2bcg_Y Protein YP2, GTP-bindin 99.9 6.8E-23 2.3E-27 196.9 18.5 163 9-176 5-170 (206)
124 2gco_A H9, RHO-related GTP-bin 99.9 9.2E-23 3.1E-27 195.3 19.3 162 421-589 23-199 (201)
125 2p5s_A RAS and EF-hand domain 99.9 3.2E-23 1.1E-27 198.1 16.0 163 9-176 25-196 (199)
126 3gj0_A GTP-binding nuclear pro 99.9 9.3E-24 3.2E-28 205.4 12.2 171 2-179 5-177 (221)
127 2erx_A GTP-binding protein DI- 99.9 2.7E-23 9.3E-28 193.1 14.8 161 11-176 2-166 (172)
128 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.7E-23 1.9E-27 192.2 17.0 164 9-177 4-174 (177)
129 1z06_A RAS-related protein RAB 99.9 3E-23 1E-27 196.6 15.2 163 8-175 16-186 (189)
130 2atv_A RERG, RAS-like estrogen 99.9 4.4E-23 1.5E-27 196.6 16.5 162 9-176 25-190 (196)
131 2bme_A RAB4A, RAS-related prot 99.9 3.7E-23 1.3E-27 195.2 15.8 164 8-176 6-172 (186)
132 4djt_A GTP-binding nuclear pro 99.9 4.2E-23 1.4E-27 200.3 16.2 170 421-596 9-181 (218)
133 2fn4_A P23, RAS-related protei 99.9 7.6E-23 2.6E-27 191.9 17.5 163 9-176 6-171 (181)
134 1ky3_A GTP-binding protein YPT 99.9 3.7E-23 1.3E-27 194.2 15.3 166 8-176 4-177 (182)
135 4gzl_A RAS-related C3 botulinu 99.9 4.7E-23 1.6E-27 197.8 16.4 161 421-588 28-203 (204)
136 2fu5_C RAS-related protein RAB 99.9 1.1E-23 3.7E-28 198.3 11.6 163 9-176 5-170 (183)
137 2ce2_X GTPase HRAS; signaling 99.9 1.1E-22 3.9E-27 187.5 18.2 160 11-176 2-164 (166)
138 3clv_A RAB5 protein, putative; 99.9 1.7E-22 5.7E-27 193.6 20.0 161 9-176 4-203 (208)
139 2fv8_A H6, RHO-related GTP-bin 99.9 9.4E-23 3.2E-27 196.1 18.3 164 422-592 24-202 (207)
140 3dz8_A RAS-related protein RAB 99.9 9.4E-24 3.2E-28 200.4 10.9 162 10-176 21-185 (191)
141 3con_A GTPase NRAS; structural 99.9 2.2E-22 7.4E-27 190.7 20.3 162 422-589 20-182 (190)
142 4dsu_A GTPase KRAS, isoform 2B 99.9 1.1E-22 3.9E-27 192.2 18.3 161 10-176 2-165 (189)
143 4bas_A ADP-ribosylation factor 99.9 7E-23 2.4E-27 195.5 16.9 162 7-176 12-188 (199)
144 2erx_A GTP-binding protein DI- 99.9 7.9E-23 2.7E-27 190.0 16.7 165 422-591 2-168 (172)
145 1g16_A RAS-related protein SEC 99.9 6.6E-23 2.3E-27 190.2 15.9 160 11-176 2-164 (170)
146 3con_A GTPase NRAS; structural 99.9 9.9E-23 3.4E-27 193.0 17.1 163 8-176 17-182 (190)
147 1x3s_A RAS-related protein RAB 99.9 8.5E-23 2.9E-27 194.2 16.6 163 9-177 12-178 (195)
148 2gf0_A GTP-binding protein DI- 99.9 1.2E-22 4.2E-27 193.8 17.4 169 421-594 6-175 (199)
149 2yc2_C IFT27, small RAB-relate 99.9 4.2E-23 1.4E-27 198.5 14.1 166 421-589 18-191 (208)
150 3t1o_A Gliding protein MGLA; G 99.9 3.2E-23 1.1E-27 197.5 13.1 169 1-176 3-191 (198)
151 3l0i_B RAS-related protein RAB 99.9 1.6E-24 5.5E-29 207.2 3.5 164 420-589 30-195 (199)
152 2atv_A RERG, RAS-like estrogen 99.9 1.8E-22 6.1E-27 192.4 17.7 162 421-589 26-190 (196)
153 3cpj_B GTP-binding protein YPT 99.9 8.1E-23 2.8E-27 199.0 15.5 165 9-178 10-177 (223)
154 2o52_A RAS-related protein RAB 99.9 5.3E-23 1.8E-27 196.8 13.8 163 9-176 22-187 (200)
155 1upt_A ARL1, ADP-ribosylation 99.9 2.6E-22 8.8E-27 186.4 17.9 161 8-177 3-169 (171)
156 1vg8_A RAS-related protein RAB 99.9 1.2E-22 4E-27 195.3 15.8 163 9-176 5-174 (207)
157 4djt_A GTP-binding nuclear pro 99.9 4.5E-23 1.5E-27 200.1 12.6 169 7-180 6-178 (218)
158 1zd9_A ADP-ribosylation factor 99.9 1.3E-22 4.5E-27 192.0 15.5 162 9-176 19-184 (188)
159 3gj0_A GTP-binding nuclear pro 99.9 5.2E-23 1.8E-27 200.1 13.0 163 420-590 12-175 (221)
160 1r8s_A ADP-ribosylation factor 99.9 2.1E-22 7.3E-27 185.7 16.2 157 13-176 1-161 (164)
161 2h17_A ADP-ribosylation factor 99.9 7.6E-23 2.6E-27 192.3 13.3 162 5-173 14-179 (181)
162 1zd9_A ADP-ribosylation factor 99.9 3.6E-22 1.2E-26 188.9 17.8 159 419-589 18-184 (188)
163 3cph_A RAS-related protein SEC 99.9 2.5E-22 8.6E-27 193.9 17.0 162 9-176 17-181 (213)
164 2gf0_A GTP-binding protein DI- 99.9 1.5E-22 5E-27 193.2 15.1 164 9-178 5-172 (199)
165 2yc2_C IFT27, small RAB-relate 99.9 3.6E-23 1.2E-27 198.9 10.8 161 11-176 19-191 (208)
166 1f6b_A SAR1; gtpases, N-termin 99.9 1.6E-22 5.5E-27 193.1 15.1 157 10-174 23-196 (198)
167 1zj6_A ADP-ribosylation factor 99.9 2.5E-22 8.5E-27 189.8 16.2 161 421-592 14-180 (187)
168 1zj6_A ADP-ribosylation factor 99.9 2.9E-22 9.8E-27 189.4 16.4 164 10-180 14-181 (187)
169 2h57_A ADP-ribosylation factor 99.9 2.7E-22 9.2E-27 190.1 16.1 161 8-175 17-185 (190)
170 2cjw_A GTP-binding protein GEM 99.9 2.9E-22 1E-26 190.2 16.3 162 10-176 4-171 (192)
171 1m2o_B GTP-binding protein SAR 99.9 3.4E-22 1.2E-26 189.5 16.4 156 10-173 21-188 (190)
172 1ksh_A ARF-like protein 2; sma 99.9 4.3E-22 1.5E-26 188.0 16.9 161 10-177 16-180 (186)
173 1upt_A ARL1, ADP-ribosylation 99.9 8.5E-22 2.9E-26 182.9 18.4 160 421-590 5-169 (171)
174 4bas_A ADP-ribosylation factor 99.9 5.8E-22 2E-26 189.1 17.4 164 420-590 14-189 (199)
175 1ksh_A ARF-like protein 2; sma 99.9 1E-21 3.4E-26 185.4 18.0 157 421-591 16-181 (186)
176 1fzq_A ADP-ribosylation factor 99.9 3.2E-22 1.1E-26 188.1 14.2 160 10-176 14-177 (181)
177 2b6h_A ADP-ribosylation factor 99.9 3.6E-22 1.2E-26 189.6 14.4 161 9-176 26-190 (192)
178 3t1o_A Gliding protein MGLA; G 99.9 1.9E-22 6.6E-27 192.0 12.3 161 421-589 12-191 (198)
179 2f7s_A C25KG, RAS-related prot 99.9 1.1E-22 3.7E-27 197.2 10.6 162 10-176 23-198 (217)
180 1f6b_A SAR1; gtpases, N-termin 99.9 7.9E-22 2.7E-26 188.3 16.1 156 422-587 24-196 (198)
181 1r8s_A ADP-ribosylation factor 99.9 9.3E-22 3.2E-26 181.4 15.8 153 424-589 1-161 (164)
182 2h57_A ADP-ribosylation factor 99.9 1.8E-21 6.2E-26 184.4 18.0 162 420-589 18-186 (190)
183 2h17_A ADP-ribosylation factor 99.9 6.3E-22 2.1E-26 186.0 13.9 157 419-586 17-179 (181)
184 1m2o_B GTP-binding protein SAR 99.9 1.2E-21 4.2E-26 185.6 15.9 156 422-587 22-189 (190)
185 2fh5_B SR-beta, signal recogni 99.9 1.4E-21 4.8E-26 188.9 16.5 162 9-174 4-213 (214)
186 3llu_A RAS-related GTP-binding 99.9 7.1E-22 2.4E-26 188.3 13.7 164 8-175 16-195 (196)
187 1fzq_A ADP-ribosylation factor 99.9 1.4E-21 4.6E-26 183.8 14.7 156 421-589 14-177 (181)
188 3th5_A RAS-related C3 botulinu 99.8 1E-23 3.4E-28 202.5 0.0 165 10-175 28-203 (204)
189 2b6h_A ADP-ribosylation factor 99.9 2E-21 6.8E-26 184.5 15.9 157 420-589 26-190 (192)
190 2x77_A ADP-ribosylation factor 99.9 1.1E-21 3.6E-26 185.8 13.8 160 10-176 20-183 (189)
191 2wji_A Ferrous iron transport 99.9 1.2E-21 4.1E-26 181.2 13.4 153 11-175 2-163 (165)
192 2zej_A Dardarin, leucine-rich 99.9 6.6E-22 2.3E-26 186.4 11.6 162 423-590 2-178 (184)
193 2wji_A Ferrous iron transport 99.9 2.4E-21 8.3E-26 179.1 15.2 152 423-588 3-163 (165)
194 2lkc_A Translation initiation 99.9 1.9E-21 6.4E-26 182.0 14.5 164 8-176 4-170 (178)
195 3iev_A GTP-binding protein ERA 99.9 6.1E-21 2.1E-25 194.5 19.4 166 6-177 4-182 (308)
196 3l0i_B RAS-related protein RAB 99.9 2.2E-23 7.5E-28 199.2 0.8 162 10-176 31-195 (199)
197 1moz_A ARL1, ADP-ribosylation 99.9 9.5E-22 3.3E-26 184.9 12.0 160 10-176 16-179 (183)
198 2wkq_A NPH1-1, RAS-related C3 99.9 2.2E-21 7.4E-26 200.9 15.8 167 10-178 153-331 (332)
199 3iev_A GTP-binding protein ERA 99.9 1.4E-20 4.8E-25 191.8 21.2 176 420-603 7-196 (308)
200 2zej_A Dardarin, leucine-rich 99.9 4.7E-22 1.6E-26 187.5 9.1 164 12-177 2-178 (184)
201 2x77_A ADP-ribosylation factor 99.9 2.1E-21 7.2E-26 183.7 13.5 160 421-590 20-184 (189)
202 1moz_A ARL1, ADP-ribosylation 99.9 4.1E-21 1.4E-25 180.5 15.2 156 421-589 16-179 (183)
203 3o47_A ADP-ribosylation factor 99.9 2.8E-21 9.5E-26 198.8 13.9 163 9-177 162-327 (329)
204 2f9l_A RAB11B, member RAS onco 99.9 2.8E-20 9.5E-25 177.6 19.6 162 422-589 4-167 (199)
205 3th5_A RAS-related C3 botulinu 99.8 4.3E-23 1.5E-27 198.0 0.0 162 420-588 27-203 (204)
206 2wkq_A NPH1-1, RAS-related C3 99.8 8.8E-21 3E-25 196.3 17.1 165 420-591 152-331 (332)
207 2qu8_A Putative nucleolar GTP- 99.8 1E-20 3.5E-25 184.8 15.1 165 10-176 27-204 (228)
208 3dpu_A RAB family protein; roc 99.8 7.5E-20 2.6E-24 201.2 22.3 163 8-178 37-209 (535)
209 1oix_A RAS-related protein RAB 99.8 5.8E-20 2E-24 174.2 18.1 162 421-588 27-190 (191)
210 1svi_A GTP-binding protein YSX 99.8 1.2E-20 4.3E-25 179.2 13.2 159 9-175 20-193 (195)
211 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-20 5.8E-25 205.0 15.9 158 9-177 319-484 (497)
212 2fh5_B SR-beta, signal recogni 99.8 4.2E-20 1.4E-24 178.5 16.4 162 421-587 5-213 (214)
213 3llu_A RAS-related GTP-binding 99.8 2.3E-20 7.8E-25 177.8 14.2 160 419-588 16-195 (196)
214 3gee_A MNME, tRNA modification 99.8 2.3E-20 8E-25 200.0 15.9 203 10-222 231-449 (476)
215 3c5h_A Glucocorticoid receptor 99.8 2.2E-21 7.6E-26 192.5 7.3 164 420-589 16-254 (255)
216 2gj8_A MNME, tRNA modification 99.8 1.5E-20 5.1E-25 175.1 12.2 152 10-175 2-164 (172)
217 3r7w_A Gtpase1, GTP-binding pr 99.8 1.8E-20 6E-25 191.1 13.7 163 11-176 2-180 (307)
218 2lkc_A Translation initiation 99.8 3.2E-20 1.1E-24 173.5 14.2 159 421-592 6-173 (178)
219 3lvq_E ARF-GAP with SH3 domain 99.8 5.4E-20 1.8E-24 201.0 17.8 165 421-598 320-492 (497)
220 3b1v_A Ferrous iron uptake tra 99.8 3.8E-20 1.3E-24 184.5 14.9 152 12-176 3-163 (272)
221 3a1s_A Iron(II) transport prot 99.8 2.8E-20 9.5E-25 184.5 13.9 155 10-176 3-166 (258)
222 2dyk_A GTP-binding protein; GT 99.8 4.3E-20 1.5E-24 169.5 14.2 150 13-175 2-160 (161)
223 3o47_A ADP-ribosylation factor 99.8 3.6E-20 1.2E-24 190.5 15.0 157 420-589 162-326 (329)
224 1wf3_A GTP-binding protein; GT 99.8 8.5E-20 2.9E-24 184.9 17.5 158 10-176 5-172 (301)
225 3pqc_A Probable GTP-binding pr 99.8 5.6E-20 1.9E-24 174.5 15.1 163 7-176 18-193 (195)
226 2wjg_A FEOB, ferrous iron tran 99.8 3E-20 1E-24 175.5 12.9 159 9-179 4-171 (188)
227 4dhe_A Probable GTP-binding pr 99.8 2.6E-20 8.8E-25 181.2 12.7 166 9-179 26-213 (223)
228 3r7w_A Gtpase1, GTP-binding pr 99.8 1.2E-19 4.2E-24 184.9 17.7 158 422-588 2-179 (307)
229 2wjg_A FEOB, ferrous iron tran 99.8 5.2E-20 1.8E-24 173.8 13.9 157 422-592 6-171 (188)
230 2dyk_A GTP-binding protein; GT 99.8 7.8E-20 2.7E-24 167.8 14.4 150 424-588 2-160 (161)
231 3gee_A MNME, tRNA modification 99.8 6.1E-20 2.1E-24 196.8 15.4 189 420-620 230-427 (476)
232 1svi_A GTP-binding protein YSX 99.8 1.5E-19 5.1E-24 171.8 16.2 158 420-589 20-194 (195)
233 3iby_A Ferrous iron transport 99.8 2.9E-20 9.9E-25 184.0 11.7 150 13-174 2-164 (256)
234 3c5h_A Glucocorticoid receptor 99.8 3E-20 1E-24 184.4 11.6 162 8-175 15-253 (255)
235 2gj8_A MNME, tRNA modification 99.8 2.5E-20 8.5E-25 173.6 10.3 155 422-589 3-165 (172)
236 2qu8_A Putative nucleolar GTP- 99.8 1.8E-19 6.2E-24 175.9 16.6 159 421-589 27-204 (228)
237 1wf3_A GTP-binding protein; GT 99.8 1.6E-19 5.5E-24 182.9 16.5 153 423-589 7-172 (301)
238 3a1s_A Iron(II) transport prot 99.8 1E-19 3.4E-24 180.5 14.3 157 422-590 4-167 (258)
239 3iby_A Ferrous iron transport 99.8 3.5E-20 1.2E-24 183.4 10.5 150 424-587 2-164 (256)
240 2f9l_A RAB11B, member RAS onco 99.8 2.8E-19 9.7E-24 170.6 16.5 160 12-176 5-167 (199)
241 2cxx_A Probable GTP-binding pr 99.8 7.2E-20 2.5E-24 173.0 11.3 154 424-589 2-183 (190)
242 2cxx_A Probable GTP-binding pr 99.8 7.1E-20 2.4E-24 173.1 11.2 156 13-177 2-184 (190)
243 3b1v_A Ferrous iron uptake tra 99.8 1.1E-19 3.7E-24 181.2 12.9 152 423-589 3-163 (272)
244 1oix_A RAS-related protein RAB 99.8 5.3E-19 1.8E-23 167.5 16.5 160 11-175 28-190 (191)
245 3i8s_A Ferrous iron transport 99.8 1.1E-19 3.7E-24 182.2 12.2 155 11-177 2-169 (274)
246 3i8s_A Ferrous iron transport 99.8 8.5E-20 2.9E-24 182.9 11.0 156 423-590 3-169 (274)
247 3r7w_B Gtpase2, GTP-binding pr 99.8 7.1E-20 2.4E-24 184.1 10.2 156 14-176 1-173 (331)
248 3pqc_A Probable GTP-binding pr 99.8 1.1E-18 3.8E-23 165.4 17.5 157 420-589 20-193 (195)
249 3k53_A Ferrous iron transport 99.8 3.4E-19 1.2E-23 178.6 14.1 157 11-178 2-167 (271)
250 3geh_A MNME, tRNA modification 99.8 1.9E-19 6.4E-24 192.2 12.8 199 10-223 222-436 (462)
251 1xzp_A Probable tRNA modificat 99.8 1.8E-19 6.1E-24 193.2 12.3 197 11-221 242-454 (482)
252 4dhe_A Probable GTP-binding pr 99.8 5.2E-19 1.8E-23 171.9 14.4 161 421-591 27-212 (223)
253 2hjg_A GTP-binding protein ENG 99.8 3.7E-19 1.3E-23 190.5 11.9 160 11-176 174-348 (436)
254 3k53_A Ferrous iron transport 99.8 1.3E-18 4.5E-23 174.3 15.1 156 423-592 3-168 (271)
255 1xzp_A Probable tRNA modificat 99.8 4.5E-19 1.5E-23 190.1 10.8 184 421-621 241-434 (482)
256 3dpu_A RAB family protein; roc 99.8 5.8E-19 2E-23 194.1 10.7 163 420-592 38-210 (535)
257 3r7w_B Gtpase2, GTP-binding pr 99.8 4.9E-19 1.7E-23 178.0 8.7 155 425-589 1-173 (331)
258 3geh_A MNME, tRNA modification 99.8 7.7E-19 2.6E-23 187.5 10.2 185 420-620 221-413 (462)
259 1mky_A Probable GTP-binding pr 99.8 4.4E-18 1.5E-22 182.3 15.8 154 424-589 2-165 (439)
260 4dcu_A GTP-binding protein ENG 99.8 3.1E-18 1.1E-22 184.4 13.8 162 9-176 192-368 (456)
261 1lnz_A SPO0B-associated GTP-bi 99.8 2.6E-18 8.7E-23 176.4 12.4 164 13-184 159-338 (342)
262 1lnz_A SPO0B-associated GTP-bi 99.7 6.8E-18 2.3E-22 173.2 14.7 163 424-591 159-331 (342)
263 1ega_A Protein (GTP-binding pr 99.7 8.8E-18 3E-22 170.4 15.2 155 423-589 8-174 (301)
264 1nrj_B SR-beta, signal recogni 99.7 3.6E-18 1.2E-22 165.3 11.3 149 8-163 8-170 (218)
265 1ega_A Protein (GTP-binding pr 99.7 6.4E-18 2.2E-22 171.5 12.3 157 11-176 7-174 (301)
266 3lxw_A GTPase IMAP family memb 99.7 1E-17 3.6E-22 165.1 12.6 172 9-185 18-216 (247)
267 3qq5_A Small GTP-binding prote 99.7 2.1E-18 7.2E-23 181.6 7.8 158 8-178 30-197 (423)
268 2xtp_A GTPase IMAP family memb 99.7 8.1E-18 2.8E-22 167.6 11.1 172 9-184 19-215 (260)
269 3izy_P Translation initiation 99.7 2.3E-18 8E-23 185.8 6.7 161 10-176 2-167 (537)
270 3qq5_A Small GTP-binding prote 99.7 4.9E-18 1.7E-22 178.9 8.6 159 421-591 32-197 (423)
271 2e87_A Hypothetical protein PH 99.7 4.3E-17 1.5E-21 169.8 15.1 159 10-176 165-335 (357)
272 3sjy_A Translation initiation 99.7 1.3E-16 4.5E-21 168.9 18.8 165 421-592 6-194 (403)
273 3sjy_A Translation initiation 99.7 7.1E-17 2.4E-21 170.9 16.2 166 8-178 4-193 (403)
274 2e87_A Hypothetical protein PH 99.7 2.1E-16 7.1E-21 164.6 19.4 161 421-589 165-335 (357)
275 1nrj_B SR-beta, signal recogni 99.7 1.6E-17 5.5E-22 160.8 9.4 143 421-575 10-168 (218)
276 2qtf_A Protein HFLX, GTP-bindi 99.7 1.1E-16 3.8E-21 166.0 15.8 165 422-591 177-355 (364)
277 3lxx_A GTPase IMAP family memb 99.7 1.1E-16 3.6E-21 157.4 13.0 166 9-179 26-216 (239)
278 1wb1_A Translation elongation 99.7 8.4E-17 2.9E-21 173.6 13.1 164 8-176 15-188 (482)
279 2qtf_A Protein HFLX, GTP-bindi 99.7 1.1E-16 3.8E-21 166.0 13.5 166 10-178 176-355 (364)
280 3tr5_A RF-3, peptide chain rel 99.7 1E-16 3.4E-21 174.1 11.6 115 11-130 12-149 (528)
281 1u0l_A Probable GTPase ENGC; p 99.7 3.9E-17 1.3E-21 165.7 7.6 132 27-169 32-165 (301)
282 1zo1_I IF2, translation initia 99.7 3.8E-17 1.3E-21 174.9 7.3 158 10-173 2-163 (501)
283 3j2k_7 ERF3, eukaryotic polype 99.7 2.7E-16 9.3E-21 167.8 13.9 161 7-169 12-217 (439)
284 2ged_A SR-beta, signal recogni 99.7 2.6E-16 8.8E-21 149.0 12.1 119 9-132 45-173 (193)
285 2aka_B Dynamin-1; fusion prote 99.7 4.5E-16 1.5E-20 158.3 14.7 161 10-175 24-251 (299)
286 2xtp_A GTPase IMAP family memb 99.7 1.2E-15 4E-20 151.9 15.8 164 421-590 20-208 (260)
287 1wb1_A Translation elongation 99.7 1E-15 3.5E-20 165.1 16.1 157 422-589 18-188 (482)
288 3j2k_7 ERF3, eukaryotic polype 99.7 1.2E-15 4E-20 162.9 16.4 153 420-582 14-217 (439)
289 3p26_A Elongation factor 1 alp 99.6 4E-16 1.4E-20 169.0 12.7 156 10-168 31-229 (483)
290 3izy_P Translation initiation 99.6 9.3E-18 3.2E-22 181.1 -0.3 160 422-591 3-169 (537)
291 2ywe_A GTP-binding protein LEP 99.6 2.6E-15 9E-20 164.2 18.5 161 422-592 5-186 (600)
292 1s0u_A EIF-2-gamma, translatio 99.6 4.7E-15 1.6E-19 157.2 20.0 163 422-591 7-199 (408)
293 2c78_A Elongation factor TU-A; 99.6 4.2E-16 1.4E-20 165.2 11.8 165 9-177 8-212 (405)
294 3cb4_D GTP-binding protein LEP 99.6 1.9E-15 6.6E-20 165.6 17.2 161 422-592 3-184 (599)
295 1kk1_A EIF2gamma; initiation o 99.6 5.1E-15 1.8E-19 157.1 19.6 165 421-592 8-202 (410)
296 1s0u_A EIF-2-gamma, translatio 99.6 1.6E-15 5.3E-20 160.9 15.6 167 9-178 5-199 (408)
297 3lxx_A GTPase IMAP family memb 99.6 9.7E-16 3.3E-20 150.4 12.9 163 420-590 26-214 (239)
298 3t5d_A Septin-7; GTP-binding p 99.6 3.2E-16 1.1E-20 157.1 9.3 160 11-176 7-203 (274)
299 3h2y_A GTPase family protein; 99.6 7.4E-17 2.5E-21 167.8 4.8 97 69-171 56-154 (368)
300 3t5d_A Septin-7; GTP-binding p 99.6 1.1E-15 3.6E-20 153.3 13.0 159 422-588 7-202 (274)
301 1g7s_A Translation initiation 99.6 1.3E-15 4.4E-20 167.3 14.7 162 11-176 4-217 (594)
302 2c78_A Elongation factor TU-A; 99.6 9.3E-16 3.2E-20 162.5 12.8 161 421-592 9-214 (405)
303 2ywe_A GTP-binding protein LEP 99.6 2.3E-15 7.8E-20 164.7 16.2 160 12-179 6-186 (600)
304 3cb4_D GTP-binding protein LEP 99.6 1.3E-15 4.4E-20 167.0 14.0 160 12-179 4-184 (599)
305 1zun_B Sulfate adenylate trans 99.6 2.3E-15 7.8E-20 160.8 15.6 157 9-169 21-216 (434)
306 2aka_B Dynamin-1; fusion prote 99.6 2E-16 6.7E-21 161.0 6.9 158 421-588 24-251 (299)
307 2ged_A SR-beta, signal recogni 99.6 4.5E-16 1.5E-20 147.3 8.9 129 421-560 46-183 (193)
308 1pui_A ENGB, probable GTP-bind 99.6 9.6E-16 3.3E-20 147.2 11.1 163 9-176 23-198 (210)
309 3lxw_A GTPase IMAP family memb 99.6 2.1E-15 7.1E-20 148.6 13.5 162 421-589 19-207 (247)
310 3izq_1 HBS1P, elongation facto 99.6 1.3E-15 4.4E-20 168.5 12.6 157 9-168 164-363 (611)
311 3ec1_A YQEH GTPase; atnos1, at 99.6 3.1E-16 1.1E-20 163.3 7.2 98 68-171 57-156 (369)
312 1d2e_A Elongation factor TU (E 99.6 2.5E-15 8.6E-20 158.6 14.2 162 422-592 2-197 (397)
313 1d2e_A Elongation factor TU (E 99.6 7.6E-16 2.6E-20 162.6 9.8 164 11-178 2-196 (397)
314 3tr5_A RF-3, peptide chain rel 99.6 1.1E-15 3.9E-20 165.8 11.1 130 422-563 12-163 (528)
315 1kk1_A EIF2gamma; initiation o 99.6 3.4E-15 1.2E-19 158.5 14.2 167 9-178 7-201 (410)
316 2elf_A Protein translation elo 99.6 1.6E-15 5.5E-20 157.7 10.6 149 14-176 23-179 (370)
317 1jny_A EF-1-alpha, elongation 99.6 1.6E-15 5.4E-20 162.0 9.4 156 10-169 4-205 (435)
318 3avx_A Elongation factor TS, e 99.6 4.1E-15 1.4E-19 169.7 13.1 166 8-177 292-486 (1289)
319 1f60_A Elongation factor EEF1A 99.6 3E-15 1E-19 160.6 10.9 155 9-167 4-202 (458)
320 3p26_A Elongation factor 1 alp 99.6 9.7E-15 3.3E-19 158.1 15.0 151 420-579 30-227 (483)
321 3def_A T7I23.11 protein; chlor 99.6 5.9E-15 2E-19 146.8 11.9 120 10-131 34-167 (262)
322 3mca_A HBS1, elongation factor 99.6 4.7E-16 1.6E-20 171.5 4.0 154 9-165 174-371 (592)
323 1zun_B Sulfate adenylate trans 99.6 1.7E-14 5.7E-19 154.2 15.7 149 421-580 22-214 (434)
324 2j69_A Bacterial dynamin-like 99.6 9.9E-15 3.4E-19 164.1 14.1 164 420-589 66-324 (695)
325 2dy1_A Elongation factor G; tr 99.6 1.7E-14 5.9E-19 161.5 15.9 117 8-128 5-139 (665)
326 1jwy_B Dynamin A GTPase domain 99.6 1E-14 3.5E-19 149.5 12.9 160 10-177 22-262 (315)
327 2xex_A Elongation factor G; GT 99.6 1.4E-15 4.9E-20 170.8 6.8 234 9-252 7-284 (693)
328 3izq_1 HBS1P, elongation facto 99.6 6.6E-15 2.2E-19 162.8 11.9 151 420-580 164-362 (611)
329 2j69_A Bacterial dynamin-like 99.6 1.4E-14 4.7E-19 162.9 14.0 163 10-176 67-324 (695)
330 1dar_A EF-G, elongation factor 99.6 2.2E-14 7.6E-19 161.1 15.6 126 1-130 1-144 (691)
331 2h5e_A Peptide chain release f 99.6 3.3E-14 1.1E-18 154.5 15.9 117 10-130 11-149 (529)
332 1jwy_B Dynamin A GTPase domain 99.6 6.8E-15 2.3E-19 150.7 9.9 160 422-590 23-262 (315)
333 2rdo_7 EF-G, elongation factor 99.6 2.6E-14 8.8E-19 160.8 15.3 236 9-252 7-292 (704)
334 1h65_A Chloroplast outer envel 99.6 1.1E-14 3.9E-19 145.5 11.1 120 10-131 37-170 (270)
335 2qag_A Septin-2, protein NEDD5 99.5 1.3E-15 4.5E-20 158.2 4.0 159 12-176 37-232 (361)
336 1g7s_A Translation initiation 99.5 1.3E-14 4.5E-19 159.3 11.8 156 422-589 4-217 (594)
337 1pui_A ENGB, probable GTP-bind 99.5 3E-14 1E-18 136.7 12.9 158 420-589 23-198 (210)
338 3avx_A Elongation factor TS, e 99.5 2.1E-14 7.2E-19 163.9 13.4 160 421-589 294-485 (1289)
339 1jny_A EF-1-alpha, elongation 99.5 1.7E-14 5.9E-19 154.0 12.1 150 421-581 4-204 (435)
340 1r5b_A Eukaryotic peptide chai 99.5 6.6E-15 2.3E-19 158.4 8.4 156 10-168 41-243 (467)
341 2qag_A Septin-2, protein NEDD5 99.5 3.1E-15 1.1E-19 155.4 5.2 159 421-589 35-232 (361)
342 1zo1_I IF2, translation initia 99.5 4.1E-16 1.4E-20 166.9 -1.4 156 422-588 3-165 (501)
343 1f60_A Elongation factor EEF1A 99.5 2.4E-14 8.1E-19 153.6 11.8 149 422-580 6-202 (458)
344 2elf_A Protein translation elo 99.5 4.4E-14 1.5E-18 146.9 13.1 144 425-589 23-179 (370)
345 3t34_A Dynamin-related protein 99.5 3.4E-14 1.2E-18 148.1 11.7 152 12-170 34-254 (360)
346 2x2e_A Dynamin-1; nitration, h 99.5 4.1E-14 1.4E-18 147.0 10.6 157 11-173 30-254 (353)
347 2dy1_A Elongation factor G; tr 99.5 1.4E-13 4.9E-18 154.1 15.0 132 421-563 7-154 (665)
348 4fid_A G protein alpha subunit 99.5 8E-14 2.7E-18 141.6 11.6 119 56-176 158-327 (340)
349 3mca_A HBS1, elongation factor 99.5 6.1E-15 2.1E-19 162.6 3.6 158 420-587 174-394 (592)
350 2h5e_A Peptide chain release f 99.5 1.4E-13 4.8E-18 149.6 14.1 115 422-547 12-148 (529)
351 1udx_A The GTP-binding protein 99.5 2.4E-13 8.3E-18 142.6 15.5 162 424-591 158-326 (416)
352 1r5b_A Eukaryotic peptide chai 99.5 4.2E-14 1.4E-18 152.1 9.2 152 420-581 40-243 (467)
353 3ohm_A Guanine nucleotide-bind 99.5 1.4E-13 4.8E-18 139.3 11.3 119 57-177 165-318 (327)
354 3ohm_A Guanine nucleotide-bind 99.5 2.2E-13 7.6E-18 137.9 12.0 118 470-592 165-320 (327)
355 3def_A T7I23.11 protein; chlor 99.5 7.2E-13 2.5E-17 131.7 15.4 122 421-547 34-165 (262)
356 1udx_A The GTP-binding protein 99.5 7.7E-13 2.6E-17 138.8 16.0 158 13-179 158-327 (416)
357 1dar_A EF-G, elongation factor 99.5 5.6E-13 1.9E-17 149.8 16.0 114 421-547 10-143 (691)
358 2x2e_A Dynamin-1; nitration, h 99.4 3.7E-14 1.3E-18 147.3 5.0 156 422-586 30-254 (353)
359 1wxq_A GTP-binding protein; st 99.4 1E-13 3.6E-18 145.2 8.0 83 13-95 1-114 (397)
360 3t34_A Dynamin-related protein 99.4 1.2E-13 4.2E-18 143.9 8.2 152 423-583 34-254 (360)
361 3vqt_A RF-3, peptide chain rel 99.4 1.1E-12 3.8E-17 143.1 15.7 114 13-130 32-167 (548)
362 1wxq_A GTP-binding protein; st 99.4 2.9E-13 9.8E-18 141.9 9.4 86 424-510 1-114 (397)
363 4fid_A G protein alpha subunit 99.4 8.3E-13 2.8E-17 134.1 12.5 122 462-590 153-328 (340)
364 2xex_A Elongation factor G; GT 99.4 1.6E-12 5.6E-17 146.0 15.9 116 421-547 8-141 (693)
365 1u0l_A Probable GTPase ENGC; p 99.4 1.5E-13 5E-18 139.3 5.6 133 438-586 32-169 (301)
366 1puj_A YLQF, conserved hypothe 99.4 2.2E-12 7.4E-17 129.0 13.9 98 63-173 3-102 (282)
367 2qnr_A Septin-2, protein NEDD5 99.4 1.7E-13 5.9E-18 138.6 6.0 161 11-178 17-215 (301)
368 1h65_A Chloroplast outer envel 99.4 1.8E-12 6.2E-17 129.4 13.3 124 421-549 37-170 (270)
369 2qnr_A Septin-2, protein NEDD5 99.4 5.3E-13 1.8E-17 135.0 9.4 160 422-589 17-213 (301)
370 2yv5_A YJEQ protein; hydrolase 99.4 1.1E-12 3.7E-17 132.8 11.5 108 56-169 47-161 (302)
371 2qpt_A EH domain-containing pr 99.4 8.2E-13 2.8E-17 144.4 11.0 119 9-130 62-233 (550)
372 3zvr_A Dynamin-1; hydrolase, D 99.4 1.5E-12 5.1E-17 145.0 13.0 159 10-174 49-275 (772)
373 2qag_C Septin-7; cell cycle, c 99.4 3.1E-13 1.1E-17 141.8 7.1 160 12-176 31-226 (418)
374 2rdo_7 EF-G, elongation factor 99.4 6.2E-12 2.1E-16 141.4 17.9 118 421-547 8-148 (704)
375 2qag_C Septin-7; cell cycle, c 99.4 8.2E-13 2.8E-17 138.6 9.5 157 423-588 31-225 (418)
376 2www_A Methylmalonic aciduria 99.4 1.2E-12 4.1E-17 135.2 10.0 152 10-175 72-277 (349)
377 1jal_A YCHF protein; nucleotid 99.4 8.3E-12 2.8E-16 127.9 15.9 85 423-509 2-108 (363)
378 3p32_A Probable GTPase RV1496/ 99.4 2.5E-13 8.7E-18 141.0 4.2 106 57-176 170-283 (355)
379 3zvr_A Dynamin-1; hydrolase, D 99.4 2.4E-12 8.3E-17 143.3 12.3 156 422-587 50-275 (772)
380 2wsm_A Hydrogenase expression/ 99.3 7.9E-13 2.7E-17 127.9 7.2 153 12-177 30-214 (221)
381 1jal_A YCHF protein; nucleotid 99.3 2.7E-11 9.1E-16 124.2 18.0 82 12-94 2-108 (363)
382 2www_A Methylmalonic aciduria 99.3 2.8E-12 9.6E-17 132.4 10.9 153 421-589 72-278 (349)
383 3p32_A Probable GTPase RV1496/ 99.3 2E-12 6.8E-17 134.2 9.0 153 421-589 77-283 (355)
384 2qpt_A EH domain-containing pr 99.3 3.4E-12 1.2E-16 139.5 10.5 121 422-551 64-236 (550)
385 2wsm_A Hydrogenase expression/ 99.3 1.2E-12 4.1E-17 126.6 5.9 154 422-591 29-215 (221)
386 3j25_A Tetracycline resistance 99.3 2.4E-12 8.2E-17 143.4 9.0 113 14-130 4-134 (638)
387 2p67_A LAO/AO transport system 99.3 1.8E-12 6E-17 133.8 6.9 107 56-176 146-260 (341)
388 2xtz_A Guanine nucleotide-bind 99.3 3.2E-12 1.1E-16 131.5 8.3 119 57-176 181-344 (354)
389 1yrb_A ATP(GTP)binding protein 99.3 7.8E-12 2.7E-16 124.2 11.0 165 8-175 10-255 (262)
390 1cip_A Protein (guanine nucleo 99.3 7.3E-12 2.5E-16 128.8 9.7 120 55-176 189-343 (353)
391 1cip_A Protein (guanine nucleo 99.3 9.2E-12 3.2E-16 128.1 10.3 121 462-589 185-343 (353)
392 4a9a_A Ribosome-interacting GT 99.3 1.1E-10 3.6E-15 120.5 17.1 155 422-582 71-240 (376)
393 1n0u_A EF-2, elongation factor 99.2 1.1E-11 3.9E-16 142.1 10.0 114 11-128 18-163 (842)
394 2dby_A GTP-binding protein; GD 99.2 2.4E-11 8.4E-16 125.4 11.1 82 13-94 2-111 (368)
395 2xtz_A Guanine nucleotide-bind 99.2 9.3E-12 3.2E-16 128.0 7.8 116 470-589 181-344 (354)
396 4a9a_A Ribosome-interacting GT 99.2 8.1E-12 2.8E-16 128.8 7.3 113 12-128 72-195 (376)
397 2hf9_A Probable hydrogenase ni 99.2 1.6E-13 5.4E-18 133.3 -5.3 57 533-589 164-223 (226)
398 2dby_A GTP-binding protein; GD 99.2 2.3E-11 7.9E-16 125.6 10.5 84 424-509 2-111 (368)
399 1zcb_A G alpha I/13; GTP-bindi 99.2 1.4E-11 4.9E-16 127.1 8.9 120 55-176 197-352 (362)
400 1n0u_A EF-2, elongation factor 99.2 2.3E-11 8E-16 139.5 11.5 117 421-546 17-163 (842)
401 2p67_A LAO/AO transport system 99.2 9.4E-12 3.2E-16 128.3 7.4 153 421-589 54-260 (341)
402 1yrb_A ATP(GTP)binding protein 99.2 1.4E-10 4.8E-15 115.1 14.6 111 472-589 109-256 (262)
403 1zcb_A G alpha I/13; GTP-bindi 99.2 3.3E-11 1.1E-15 124.4 10.0 121 462-589 193-352 (362)
404 1azs_C GS-alpha; complex (lyas 99.2 2.3E-11 7.8E-16 126.4 8.8 120 56-176 214-384 (402)
405 4fn5_A EF-G 1, elongation fact 99.2 6.2E-11 2.1E-15 134.0 12.2 113 14-130 15-152 (709)
406 1azs_C GS-alpha; complex (lyas 99.2 5.7E-11 2E-15 123.4 10.4 120 463-589 210-384 (402)
407 2hf9_A Probable hydrogenase ni 99.2 2.8E-11 9.5E-16 117.3 7.2 153 11-176 37-223 (226)
408 3vqt_A RF-3, peptide chain rel 99.1 5.8E-10 2E-14 121.6 16.3 114 423-547 31-166 (548)
409 2qm8_A GTPase/ATPase; G protei 99.1 1.8E-10 6E-15 118.3 9.1 153 10-175 53-259 (337)
410 2qm8_A GTPase/ATPase; G protei 99.0 6.1E-10 2.1E-14 114.2 11.3 153 421-589 53-260 (337)
411 3cnl_A YLQF, putative uncharac 99.0 2.5E-10 8.7E-15 112.6 7.3 88 67-169 5-93 (262)
412 3j25_A Tetracycline resistance 99.0 2.4E-10 8.4E-15 127.3 5.5 112 425-547 4-133 (638)
413 2ohf_A Protein OLA1, GTP-bindi 98.9 5.5E-10 1.9E-14 115.5 6.1 93 421-513 20-132 (396)
414 2yv5_A YJEQ protein; hydrolase 98.9 2.5E-09 8.4E-14 108.1 8.2 95 482-585 66-164 (302)
415 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.8E-08 6.3E-13 104.5 14.4 89 421-509 18-127 (392)
416 4fn5_A EF-G 1, elongation fact 98.8 5.1E-08 1.7E-12 110.1 17.9 117 422-547 12-151 (709)
417 2ohf_A Protein OLA1, GTP-bindi 98.8 3.3E-09 1.1E-13 109.8 6.3 92 9-100 19-134 (396)
418 1t9h_A YLOQ, probable GTPase E 98.8 5E-09 1.7E-13 105.1 5.9 89 75-168 79-168 (307)
419 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 6.8E-08 2.3E-12 100.2 13.7 86 9-94 17-127 (392)
420 3l82_B F-box only protein 4; T 98.6 3.4E-08 1.2E-12 91.4 6.5 102 481-589 111-222 (227)
421 2rcn_A Probable GTPase ENGC; Y 98.6 2E-07 6.7E-12 95.3 12.7 83 79-168 127-210 (358)
422 2j37_W Signal recognition part 98.6 3.8E-08 1.3E-12 105.4 7.3 152 422-587 100-310 (504)
423 2j37_W Signal recognition part 98.6 1.8E-08 6.2E-13 107.9 4.8 151 11-174 100-310 (504)
424 3l82_B F-box only protein 4; T 98.5 7.9E-08 2.7E-12 89.0 6.2 106 67-176 110-222 (227)
425 2qag_B Septin-6, protein NEDD5 98.5 4.4E-07 1.5E-11 94.7 11.2 141 423-572 42-217 (427)
426 1tq4_A IIGP1, interferon-induc 98.5 2E-06 6.9E-11 89.8 15.3 158 13-176 70-252 (413)
427 3h2y_A GTPase family protein; 98.5 3.1E-07 1.1E-11 95.2 8.9 98 481-589 55-159 (368)
428 3sop_A Neuronal-specific septi 98.4 2.3E-07 7.9E-12 91.8 7.1 113 12-129 2-154 (270)
429 2qag_B Septin-6, protein NEDD5 98.4 2.3E-07 7.7E-12 96.9 7.3 113 13-130 43-191 (427)
430 1tq4_A IIGP1, interferon-induc 98.4 1.9E-06 6.6E-11 89.9 12.9 154 422-589 68-252 (413)
431 3l2o_B F-box only protein 4; s 98.4 1.8E-07 6E-12 91.0 3.9 102 480-590 195-308 (312)
432 3ec1_A YQEH GTPase; atnos1, at 98.3 5.8E-07 2E-11 93.3 7.3 98 481-589 57-161 (369)
433 3sop_A Neuronal-specific septi 98.3 1E-06 3.5E-11 87.1 8.5 135 423-565 2-175 (270)
434 3l2o_B F-box only protein 4; s 98.3 7.8E-07 2.7E-11 86.5 6.5 108 66-177 194-308 (312)
435 1puj_A YLQF, conserved hypothe 98.2 2.7E-06 9.3E-11 84.6 7.6 98 477-588 4-104 (282)
436 3dm5_A SRP54, signal recogniti 98.1 1.1E-05 3.8E-10 84.5 11.2 138 422-572 99-274 (443)
437 1f5n_A Interferon-induced guan 98.1 3.6E-06 1.2E-10 91.6 6.9 62 10-71 36-103 (592)
438 2v3c_C SRP54, signal recogniti 98.1 2.8E-06 9.6E-11 89.6 5.8 111 12-129 99-252 (432)
439 3dm5_A SRP54, signal recogniti 98.0 3.4E-05 1.2E-09 80.8 13.4 141 11-167 99-281 (443)
440 2v3c_C SRP54, signal recogniti 98.0 1.8E-06 6.1E-11 91.1 3.3 150 424-587 100-308 (432)
441 3cnl_A YLQF, putative uncharac 97.9 4.5E-06 1.6E-10 82.1 3.9 55 13-71 100-156 (262)
442 1f5n_A Interferon-induced guan 97.8 5.1E-05 1.7E-09 82.6 9.6 63 421-483 36-102 (592)
443 3kl4_A SRP54, signal recogniti 97.7 5.4E-05 1.8E-09 79.4 8.1 137 423-572 97-273 (433)
444 3kl4_A SRP54, signal recogniti 97.7 0.00014 4.7E-09 76.3 10.7 140 11-166 96-279 (433)
445 1j8m_F SRP54, signal recogniti 97.6 5.9E-05 2E-09 75.4 6.5 94 57-167 179-281 (297)
446 1t9h_A YLOQ, probable GTPase E 97.6 4.9E-05 1.7E-09 76.1 5.0 84 492-582 81-169 (307)
447 1j8m_F SRP54, signal recogniti 97.5 0.00016 5.3E-09 72.4 7.9 141 423-579 98-280 (297)
448 3szr_A Interferon-induced GTP- 97.5 0.00029 9.8E-09 77.9 9.9 25 425-449 47-71 (608)
449 3szr_A Interferon-induced GTP- 97.3 0.00021 7.1E-09 79.0 6.9 23 14-36 47-69 (608)
450 2rcn_A Probable GTPase ENGC; Y 97.2 0.00082 2.8E-08 68.5 9.1 82 494-584 127-213 (358)
451 2mys_B Myosin; muscle protein, 97.0 0.0024 8.3E-08 57.3 9.0 136 190-377 19-158 (166)
452 3fwb_A Cell division control p 96.8 0.0037 1.3E-07 55.6 9.0 141 189-376 16-158 (161)
453 3e70_C DPA, signal recognition 96.8 0.0033 1.1E-07 63.6 9.3 142 422-578 128-308 (328)
454 3j04_B Myosin regulatory light 96.8 0.0013 4.4E-08 57.4 5.6 134 192-376 3-138 (143)
455 3e70_C DPA, signal recognition 96.8 0.0018 6.2E-08 65.5 7.0 141 10-166 127-309 (328)
456 2xxa_A Signal recognition part 96.7 0.0011 3.8E-08 69.7 5.2 111 12-129 100-254 (433)
457 3pxi_A Negative regulator of g 96.7 0.0017 5.9E-08 74.0 7.1 25 11-35 200-224 (758)
458 3q5d_A Atlastin-1; G protein, 96.7 0.0014 4.9E-08 68.8 5.8 26 10-35 65-90 (447)
459 1nya_A Calerythrin; EF-hand, m 96.7 0.0023 7.8E-08 58.0 6.4 147 193-376 4-162 (176)
460 1q80_A SCP, sarcoplasmic calci 96.6 0.003 1E-07 57.1 6.8 144 193-377 3-155 (174)
461 3ox6_A Calcium-binding protein 96.6 0.004 1.4E-07 54.7 7.4 144 190-376 5-151 (153)
462 3qrx_A Centrin; calcium-bindin 96.6 0.0034 1.2E-07 56.5 6.9 142 189-377 21-164 (169)
463 2ccm_A Calexcitin; EF hand, ca 96.6 0.0049 1.7E-07 56.7 8.1 152 191-376 7-169 (191)
464 2mys_C Myosin; muscle protein, 96.6 0.0096 3.3E-07 52.0 9.6 140 192-376 4-146 (149)
465 1dtl_A Cardiac troponin C; hel 96.6 0.0047 1.6E-07 55.0 7.5 145 187-376 9-157 (161)
466 2aao_A CDPK, calcium-dependent 96.6 0.012 4E-07 52.6 10.2 138 192-377 23-160 (166)
467 1bif_A 6-phosphofructo-2-kinas 96.5 0.00035 1.2E-08 74.9 -0.3 112 10-125 37-159 (469)
468 2yhs_A FTSY, cell division pro 96.5 0.0079 2.7E-07 63.6 9.8 26 9-34 290-315 (503)
469 3q5d_A Atlastin-1; G protein, 96.5 0.0036 1.2E-07 65.8 7.1 26 421-446 65-90 (447)
470 3akb_A Putative calcium bindin 96.5 0.0031 1E-07 56.4 5.8 143 196-376 4-158 (166)
471 2sas_A Sarcoplasmic calcium-bi 96.4 0.015 5E-07 52.9 10.2 150 192-377 4-166 (185)
472 2xxa_A Signal recognition part 96.4 0.011 3.8E-07 62.1 10.2 130 423-565 100-269 (433)
473 3dtp_E RLC, myosin regulatory 96.4 0.0028 9.4E-08 59.0 4.9 135 190-377 51-188 (196)
474 2bl0_C Myosin regulatory light 96.4 0.0033 1.1E-07 54.6 5.1 134 194-376 4-140 (142)
475 2obh_A Centrin-2; DNA repair c 96.4 0.0052 1.8E-07 53.7 6.4 135 194-375 4-140 (143)
476 4dzz_A Plasmid partitioning pr 96.4 0.0049 1.7E-07 57.6 6.6 67 57-128 74-143 (206)
477 1rj9_A FTSY, signal recognitio 96.4 0.015 5.1E-07 58.1 10.4 63 496-571 219-281 (304)
478 1bif_A 6-phosphofructo-2-kinas 96.3 0.00056 1.9E-08 73.3 -0.3 112 421-540 37-156 (469)
479 3u0k_A Rcamp; fluorescent prot 96.3 0.0018 6.2E-08 66.5 3.4 143 185-374 291-435 (440)
480 4ds7_A Calmodulin, CAM; protei 96.3 0.0052 1.8E-07 53.6 5.9 137 190-375 5-144 (147)
481 1wdc_B Scallop myosin; calcium 96.3 0.0057 1.9E-07 54.2 6.2 134 190-376 12-148 (156)
482 1r6b_X CLPA protein; AAA+, N-t 96.2 0.036 1.2E-06 63.0 13.9 25 11-35 206-230 (758)
483 2lvv_A Flagellar calcium-bindi 96.2 0.0075 2.6E-07 57.5 6.9 145 191-377 46-197 (226)
484 1rj9_A FTSY, signal recognitio 96.2 0.026 8.9E-07 56.3 11.0 24 11-34 101-124 (304)
485 3ney_A 55 kDa erythrocyte memb 96.1 0.0029 9.9E-08 58.7 3.2 25 11-35 18-42 (197)
486 2yhs_A FTSY, cell division pro 96.0 0.025 8.7E-07 59.8 10.5 24 422-445 292-315 (503)
487 2bl0_B Myosin regulatory light 96.0 0.0074 2.5E-07 52.5 5.3 130 198-377 7-139 (145)
488 1exr_A Calmodulin; high resolu 96.0 0.011 3.6E-07 51.9 6.3 137 191-375 5-144 (148)
489 2ovk_B RLC, myosin regulatory 95.9 0.016 5.6E-07 50.9 7.5 106 189-345 9-114 (153)
490 2lmt_A Calmodulin-related prot 95.9 0.0037 1.3E-07 55.1 3.2 137 191-374 5-143 (148)
491 3i5g_B Myosin regulatory light 95.9 0.031 1.1E-06 49.5 9.3 135 188-375 8-145 (153)
492 1top_A Troponin C; contractIle 95.9 0.016 5.4E-07 51.4 7.3 142 190-376 14-158 (162)
493 1vma_A Cell division protein F 95.9 0.072 2.5E-06 53.1 12.6 137 423-572 104-284 (306)
494 1y1x_A Leishmania major homolo 95.8 0.018 6.1E-07 53.1 7.5 129 196-378 27-157 (191)
495 1zp6_A Hypothetical protein AT 95.8 0.0054 1.8E-07 56.6 3.8 29 7-35 4-32 (191)
496 1ye8_A Protein THEP1, hypothet 95.8 0.0046 1.6E-07 56.6 3.2 23 13-35 1-23 (178)
497 1ex7_A Guanylate kinase; subst 95.7 0.0032 1.1E-07 58.0 1.6 21 15-35 4-24 (186)
498 2px0_A Flagellar biosynthesis 95.6 0.02 7E-07 56.9 7.5 126 426-571 108-273 (296)
499 2jnf_A Troponin C; stretch act 95.6 0.008 2.7E-07 53.2 4.1 142 190-375 7-152 (158)
500 3cs1_A Flagellar calcium-bindi 95.6 0.015 5.1E-07 55.0 6.2 145 191-377 43-194 (219)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1e-40 Score=358.07 Aligned_cols=325 Identities=18% Similarity=0.172 Sum_probs=218.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC--------cchhhhHHhhc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEELK 81 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~ 81 (643)
..+|+|+|+||||||||+|+|++..+. .+.++++.. +....+...+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD-RIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc-eEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999999998753 334443221 2334555667889999999986 34455668899
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
+||++|+|+|++++.+..+. .+...+++. ++|+++|+||+|+...... ..+.+ .++ +..++++||++|
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~~-----~~~~~--~lg-~~~~~~iSA~~g 149 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFY--SLG-FGEPYPISGTHG 149 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----C-----CCSSG--GGS-SCCCEECBTTTT
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchhh-----HHHHH--HcC-CCCeEEEeCcCC
Confidence 99999999999888776543 366666654 8999999999998754221 11111 222 236899999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRV 241 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~ 241 (643)
.|++++++++.+.+.....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~------------------------------------------------------------- 168 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPE------------------------------------------------------------- 168 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCS-------------------------------------------------------------
T ss_pred CChHHHHHHHHHhcCcccc-------------------------------------------------------------
Confidence 9999999977654221000
Q ss_pred HHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHh
Q 006490 242 VQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321 (643)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~ 321 (643)
T Consensus 169 -------------------------------------------------------------------------------- 168 (436)
T 2hjg_A 169 -------------------------------------------------------------------------------- 168 (436)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCcc
Q 006490 322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPA 401 (643)
Q Consensus 322 f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~ 401 (643)
T Consensus 169 -------------------------------------------------------------------------------- 168 (436)
T 2hjg_A 169 -------------------------------------------------------------------------------- 168 (436)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecC
Q 006490 402 AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEI 480 (643)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~ 480 (643)
.......+||+++|+||||||||+|+|++.++..++. ++++.+.....+...| ..+.+|||+
T Consensus 169 ---------------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~ 231 (436)
T 2hjg_A 169 ---------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTA 231 (436)
T ss_dssp ---------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHH
T ss_pred ---------------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECC
Confidence 0001134799999999999999999999998764443 4333333344455553 457889999
Q ss_pred Cc----------hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490 481 PE----------EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (643)
Q Consensus 481 g~----------~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~ 550 (643)
|+ +.+..+ +...+++.||++++|+|++++.+++.. .|+..+... ++|+++|+||+|+.+...
T Consensus 232 G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA------GKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHTCBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT------TCEEEEEEECGGGSCCCT
T ss_pred CcCcCccccchHHHHHHH-HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc------CCcEEEEEECccCCCcch
Confidence 97 333322 245688999999999999999887664 566666553 899999999999986543
Q ss_pred c--HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCC
Q 006490 551 A--VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI 595 (643)
Q Consensus 551 ~--~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~ 595 (643)
. .+..+++.+.+ +..+++++||++| |++++|+.+.+.+..+..+.
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 304 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 2 22334444443 3346999999999 99999999999887554443
No 2
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.8e-38 Score=340.93 Aligned_cols=330 Identities=17% Similarity=0.174 Sum_probs=213.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc---------hhhhHHhhcc
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEELKR 82 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 82 (643)
+|+|+|+||||||||+|+|++... +.+.|+++.. +....+...+..+.+|||||++.. ...+..++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRD-PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------C-CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccc-eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 799999999999999999999873 4555553322 233344556778999999998742 2345678999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
||++|+|+|+++..+..+. .+..++++. ++|+++|+||+|+... ...+...++. .++ +..++++||++|.
T Consensus 82 ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~----~~~~~~~~~~-~lg-~~~~~~iSA~~g~ 151 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE----FEREVKPELY-SLG-FGEPIPVSAEHNI 151 (439)
T ss_dssp CSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH----HHHHTHHHHG-GGS-SCSCEECBTTTTB
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc----cHHHHHHHHH-hcC-CCCEEEEeccCCC
Confidence 9999999999887665442 355556655 7999999999997521 0111102222 333 2358999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 006490 163 QVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 242 (643)
|++++++.+.+.+.......
T Consensus 152 gv~~L~~~i~~~l~~~~~~~------------------------------------------------------------ 171 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDL------------------------------------------------------------ 171 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCS------------------------------------------------------------
T ss_pred CHHHHHHHHHHhcccccccc------------------------------------------------------------
Confidence 99999998766532100000
Q ss_pred HhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhh
Q 006490 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322 (643)
Q Consensus 243 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f 322 (643)
.
T Consensus 172 ------------------------------------------------------~------------------------- 172 (439)
T 1mky_A 172 ------------------------------------------------------E------------------------- 172 (439)
T ss_dssp ------------------------------------------------------S-------------------------
T ss_pred ------------------------------------------------------h-------------------------
Confidence 0
Q ss_pred hhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCCCccc
Q 006490 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAA 402 (643)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~~~~ 402 (643)
T Consensus 173 -------------------------------------------------------------------------------- 172 (439)
T 1mky_A 173 -------------------------------------------------------------------------------- 172 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCC
Q 006490 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIP 481 (643)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g 481 (643)
. .......+||+|+|++|||||||+|+|++..+..+++ ++++.+.....+...| ..+.+|||+|
T Consensus 173 ------------~-~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G 237 (439)
T 1mky_A 173 ------------S-KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAG 237 (439)
T ss_dssp ------------S-CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSC
T ss_pred ------------h-ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCC
Confidence 0 0001235899999999999999999999988755444 4333223333445553 3567899999
Q ss_pred chhhhhh----------hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc
Q 006490 482 EEGVKKI----------LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 551 (643)
Q Consensus 482 ~~~~~~~----------~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~ 551 (643)
......+ .+...+++.+|++++|+|++++.+++. ..+...+... ++|+++|+||||+.+....
T Consensus 238 ~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~~------~~~~ilv~NK~Dl~~~~~~ 310 (439)
T 1mky_A 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR------GRASVVVFNKWDLVVHREK 310 (439)
T ss_dssp C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT------TCEEEEEEECGGGSTTGGG
T ss_pred CccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCCchhh
Confidence 7432221 123467889999999999998777554 3333333333 8999999999999764431
Q ss_pred --HHHHHHHHHHh---CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCC
Q 006490 552 --VQDSARVTQEL---GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNI 595 (643)
Q Consensus 552 --~~~~~~~~~~~---~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~ 595 (643)
.+..+.+.+.+ +..+++++||++| |++++|+.+.+.+..+..++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 311 RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence 22233344443 3446999999999 99999999999886555444
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=1.8e-39 Score=350.30 Aligned_cols=329 Identities=18% Similarity=0.182 Sum_probs=218.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC--------cchhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL--------ENKGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~ 78 (643)
.+...+|+|+|++|||||||+|+|++..+. .+.+++.. .+....+...+..+.+|||||+. .+......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~-~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR-DRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcce-eEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 455679999999999999999999998753 33444222 22344555677899999999943 44556668
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
+++.+|++|+|+|..+..+... ..+...+++. ++|+++|+||+|+...... ..+.+...++ .++++||
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECCT
T ss_pred hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEeec
Confidence 8999999999999776544443 3466677665 8999999999998653211 1122222333 5789999
Q ss_pred ccCCChhHHHHHHHHHHhCCCCCCCccccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV 238 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~ 238 (643)
++|.|+.++++.+.+.+....
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~----------------------------------------------------------- 187 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIP----------------------------------------------------------- 187 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSC-----------------------------------------------------------
T ss_pred ccccchHHHHHHHHhhccccc-----------------------------------------------------------
Confidence 999999999987643211000
Q ss_pred HHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHH
Q 006490 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFL 318 (643)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~ 318 (643)
.
T Consensus 188 ----------------------------------------------------------~--------------------- 188 (456)
T 4dcu_A 188 ----------------------------------------------------------E--------------------- 188 (456)
T ss_dssp ----------------------------------------------------------S---------------------
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred HHhhhhhcCCCCCCCChhHHhhhhccCCCCCCCCCCCCCCccccCCcccchhhhhhhhhhhhccCHHHHHHHHHHhcCCC
Q 006490 319 RGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG 398 (643)
Q Consensus 319 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~ 398 (643)
T Consensus 189 -------------------------------------------------------------------------------- 188 (456)
T 4dcu_A 189 -------------------------------------------------------------------------------- 188 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccchhccchhhhhhhccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEE
Q 006490 399 DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLIL 477 (643)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~ 477 (643)
.......++|+++|.+|||||||+|+|++.++..+.. ++++.+.....+...| ..+.+|
T Consensus 189 ------------------~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~ 248 (456)
T 4dcu_A 189 ------------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIV 248 (456)
T ss_dssp ------------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEET
T ss_pred ------------------cccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEE
Confidence 0001235799999999999999999999887554443 4333333333444443 478899
Q ss_pred ecCC----------chhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 478 QEIP----------EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 478 d~~g----------~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
||+| ++.+..+ +...+++.||++++|+|++++.+ +....|...+... ++|+|+|+||||+.+
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEA------GKAVVIVVNKWDAVD 320 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT------TCEEEEEEECGGGSC
T ss_pred ECCCCCcCcccchHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHc------CCCEEEEEEChhcCC
Confidence 9999 5555443 34568899999999999998765 4455666666553 899999999999986
Q ss_pred cccc-HHHHHHHHHHh----CCCCcEEeeeccC-CHHHHHHHHHHHHhCCCCCCC
Q 006490 548 YTMA-VQDSARVTQEL----GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPHLNIP 596 (643)
Q Consensus 548 ~~~~-~~~~~~~~~~~----~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~~~~~ 596 (643)
.+.. .++..+.++.. +..++++|||++| |++++|+.+.+.+..+....+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 5433 23333333333 3456999999999 999999999998865554443
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=6.3e-28 Score=232.68 Aligned_cols=163 Identities=20% Similarity=0.342 Sum_probs=137.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+.+||+|+|++|||||||+++|+++.+...+.||++.++....+...+...++.+|||+|++.+..+ +..+++.+|++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l--~~~~~~~a~~~ 89 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL--IPSYIRDSAAA 89 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG--HHHHHTTCSEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH--HHHHhccccEE
Confidence 3589999999999999999999999999999899998888888888877888999999999999998 78899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.||+.+..|+..+...... +.|++||+||+|+.+.+++ .++++++++.+++. +++|||++| ||++
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV~e 165 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQ 165 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCHHH
Confidence 9999999999999999999998876543 7999999999999876554 77899999999987 999999999 9999
Q ss_pred HHHHHHHHHhC
Q 006490 580 VFSRIIWAAEH 590 (643)
Q Consensus 580 l~~~l~~~~~~ 590 (643)
+|+.|++.+..
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=6.2e-28 Score=232.69 Aligned_cols=172 Identities=18% Similarity=0.238 Sum_probs=131.3
Q ss_pred CCCCCCCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhH
Q 006490 1 MPGGSGSS-SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 1 m~~~~~~~-~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
|+...+.. .++.+||+|+|++|||||||+++|+.+.|...+.++.+... ....+....+.+.||||+|++++..+++
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55544433 45689999999999999999999999999887655544322 3445566778999999999999999999
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEe
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
.+++.+|++++|||++++.+++.+.. |+..++.. .++.|+||||||+|+...+.+ . .+..+.++++++ ..+++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V-~-~~e~~~~a~~~~--~~~~e~ 155 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV-S-IEEGERKAKELN--VMFIET 155 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEE
T ss_pred HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc-c-HHHHhhHHHHhC--CeeEEE
Confidence 99999999999999999999999984 88888654 568999999999999876665 3 445678888887 369999
Q ss_pred CcccCCChhHHHHHHHHHHhC
Q 006490 157 SATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
||++|.||+++|+.+++.+..
T Consensus 156 SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC--
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=8.4e-25 Score=211.65 Aligned_cols=168 Identities=17% Similarity=0.243 Sum_probs=139.4
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+|+|.+|||||||+++|++..+...+.||++..+ ...+...+....+.+||++|++.+..+ +..+++.+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~ 99 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDS 99 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTT--GGGGCTTC
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHH--HHHHcCCC
Confidence 345579999999999999999999999999888888887765 345666766778899999999988887 77889999
Q ss_pred CEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCC
Q 006490 499 DVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI 564 (643)
Q Consensus 499 d~illv~D~s~~~s~~~-~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~ 564 (643)
|++|+|||++++.+|+. +..|+..+..... +.|+++|+||+|+... ....+....+++.+++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCP----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCT----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999998 6889999888754 7999999999999752 2337788899999999
Q ss_pred CCcEEeeeccC-C-HHHHHHHHHHHHhCCCC
Q 006490 565 EPPIPVSMKSK-D-LNNVFSRIIWAAEHPHL 593 (643)
Q Consensus 565 ~~~~~vSa~~g-~-i~~l~~~l~~~~~~~~~ 593 (643)
.++++|||++| | ++++|+.|.+.+.....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 55999999999 9 99999999998865443
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=206.51 Aligned_cols=167 Identities=23% Similarity=0.339 Sum_probs=135.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34568999999999999999999999988766555443322 33344455688999999999999989999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEe
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
+|||++++.+++.+...|+..+....+++|+++|+||+|+.... .. ...+....+++.++. .++++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~ 172 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKP-ICVEQGQKLAKEIGA-CCYVEC 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCC-CCHHHHHHHHHHHTC-SCEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcc-cCHHHHHHHHHHcCC-cEEEEe
Confidence 99999999999998766999998877789999999999997642 11 123445666777653 369999
Q ss_pred CcccCCChhHHHHHHHHHHhC
Q 006490 157 SATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
||++|.||+++|+++.+.++.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=208.07 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=135.3
Q ss_pred cccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (643)
Q Consensus 418 ~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (643)
......+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ 101 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--TQSYYRS 101 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--HHHHHTT
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHHhh
Confidence 33456799999999999999999999999887777778777777777777755678889999999988877 7888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 498 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 498 ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
+|++|+|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+.. .+++.++++.+++.++++|||++|
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS---NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 99999999999999999999999998876532 7999999999999764433 667888999999845999999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|++++|++|.+.+.
T Consensus 179 gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 179 NVEEAFLRVATELI 192 (201)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999875
No 9
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=205.92 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=135.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-hhccHHhhccC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC 498 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~a 498 (643)
....+||+|+|++|||||||+|+|++......+.+++..+.....+.+.+....+.+||++|++.+.. + ...+++.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~ 97 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL--RDHCLQTG 97 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH--HHHHHHHC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh--HHHhhccC
Confidence 45679999999999999999999987655444446555556566667776667888999999987654 4 56678999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
|++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+.. .+....+++.+++. ++++||++| |
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~ 174 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHN 174 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTBS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCCC
Confidence 99999999999999999999999887765333 7999999999999765443 56778889988875 999999999 9
Q ss_pred HHHHHHHHHHHHhCC
Q 006490 577 LNNVFSRIIWAAEHP 591 (643)
Q Consensus 577 i~~l~~~l~~~~~~~ 591 (643)
++++|+.|++.+...
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988643
No 10
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=9.1e-25 Score=207.96 Aligned_cols=170 Identities=21% Similarity=0.336 Sum_probs=138.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
.+..+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999999988766555443332 33445556778899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
+|||++++.+++.+...|...++...+++|+++|+||+|+..........+....++..++. ..++++||++|.||+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-VAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-SCEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-CEEEEeecCCCCCHHHH
Confidence 99999999999998667999998877889999999999997642211234556777777763 24999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006490 168 FYYAQKAVLHPT 179 (643)
Q Consensus 168 ~~~i~~~~~~~~ 179 (643)
|+++.+.+....
T Consensus 179 ~~~l~~~i~~~~ 190 (194)
T 3reg_A 179 FEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC
Confidence 999999886543
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.2e-24 Score=201.34 Aligned_cols=163 Identities=24% Similarity=0.373 Sum_probs=140.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 83 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--TSTYYRGTH 83 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--CGGGGTTCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--HHHHhccCC
Confidence 346799999999999999999999999988777788887787788888866678889999999888776 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|+|++++.+++.+..|+..+..... +.|+++|+||+|+...+.. .+....++...+++ ++++||++| |+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 158 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNV 158 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT----TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 99999999999999999999999887654 7999999999998765443 57788889999986 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 159 ~~l~~~l~~~~~ 170 (181)
T 3tw8_B 159 EEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 12
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=1.9e-24 Score=203.22 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=139.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|+++.+...+.+|++..+ ...+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHHHhcCCEE
Confidence 468999999999999999999999888888878887766 556666756667889999999888766 67888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+++.+..|+..+....... ++|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVD 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCHHH
Confidence 99999999999999999999887765443 7999999999999765444 77888999999986 999999999 9999
Q ss_pred HHHHHHHHHhCCCCC
Q 006490 580 VFSRIIWAAEHPHLN 594 (643)
Q Consensus 580 l~~~l~~~~~~~~~~ 594 (643)
+|+.|.+.+......
T Consensus 159 l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 159 VFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998765543
No 13
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=3e-24 Score=199.34 Aligned_cols=162 Identities=26% Similarity=0.424 Sum_probs=136.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--HHHHhccCCEE
Confidence 3589999999999999999999999887777788887788888888866778899999999888776 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.......+....+++.++++ ++++||++| |++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEI 155 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 9999999999999999999888776532 789999999999965444567788899999986 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 14
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5e-24 Score=199.96 Aligned_cols=167 Identities=19% Similarity=0.359 Sum_probs=134.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
...+||+|+|++|||||||+|+|++..+.. .+.+|++.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHccCCC
Confidence 457999999999999999999999998864 44577777777777777766678889999999888776 677889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++.+++. ++++||++| |+
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 161 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNV 161 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence 999999999999999999999988876532 7999999999999865443 56778888889986 999999999 99
Q ss_pred HHHHHHHHHHHhCCCC
Q 006490 578 NNVFSRIIWAAEHPHL 593 (643)
Q Consensus 578 ~~l~~~l~~~~~~~~~ 593 (643)
+++|++|.+.+.....
T Consensus 162 ~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 162 DLAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998875443
No 15
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=1.7e-24 Score=204.20 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=129.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
...++.+||+|+|++|||||||+++|+++.+...+.++.+.......+....+.+.+|||+|++.+. +++.+|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 3467789999999999999999999999998776555544444444555667889999999988764 78899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++|||++++.+++.+.. |+..+.... .++|++||+||+|+..........+....++..++. ..+++|||++|.||
T Consensus 90 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR-CTYYETCATYGLNV 167 (184)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT-CEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC-CeEEEecCCCCCCH
Confidence 99999999999999884 999987753 579999999999995322111234556777777763 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 168 ~~lf~~l~~~i~ 179 (184)
T 3ihw_A 168 ERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.3e-24 Score=205.20 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=141.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+..+|....+.+||++|++.+..+ +..+++.+|
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 100 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSAN 100 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHHhcCC
Confidence 345799999999999999999999999888777788887787778888866678889999999988877 678899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+..+.+++..++. +++|||++| |+
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 176 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV 176 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999988776532 7899999999999764443 66778888888886 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 177 ~~l~~~l~~~i~ 188 (201)
T 2ew1_A 177 EKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998774
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=7e-24 Score=201.93 Aligned_cols=164 Identities=25% Similarity=0.411 Sum_probs=144.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT--HHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHHhhCCE
Confidence 45799999999999999999999999988888888887788888888866678889999999888777 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+..+.+++.++++ ++++||++| |++
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNVE 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Confidence 99999999999999999999988776543 7899999999999865544 56788899999986 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 006490 579 NVFSRIIWAAEH 590 (643)
Q Consensus 579 ~l~~~l~~~~~~ 590 (643)
++|++|.+.+..
T Consensus 168 ~l~~~l~~~i~~ 179 (196)
T 3tkl_A 168 QSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=5.9e-24 Score=200.14 Aligned_cols=164 Identities=19% Similarity=0.344 Sum_probs=140.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ ...+++.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 91 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGD 91 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHH--HHHHHhcCC
Confidence 34579999999999999999999999988888878877766 566666656666778999999888777 678899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeec-cC-C
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMK-SK-D 576 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~-~g-~ 576 (643)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+.. .+....+++.++++ ++++||+ +| |
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLN 168 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCCCC
Confidence 9999999999999999999999887654433 7999999999999764443 67788999999976 9999999 99 9
Q ss_pred HHHHHHHHHHHHh
Q 006490 577 LNNVFSRIIWAAE 589 (643)
Q Consensus 577 i~~l~~~l~~~~~ 589 (643)
++++|+.|.+.+.
T Consensus 169 v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 169 VDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 19
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=1.1e-24 Score=210.94 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=135.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..+..+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.||||+|++.+...+..+++.+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 45667999999999999999999999999877755544333 23345556678999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEE
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV 154 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (643)
|+|||++++.+++.+...|+..++..++++|++||+||+|+..+ +.+ ..+....++..++. .+++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~ 179 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EIYL 179 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CEEE
Confidence 99999999999999544799999888889999999999999753 222 34456777777762 3799
Q ss_pred EeCcccCCC-hhHHHHHHHHHHhCCCC
Q 006490 155 ECSATTMIQ-VPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 155 ~~Sa~~~~g-i~~l~~~i~~~~~~~~~ 180 (643)
+|||++|.| |+++|+.+.+.+.....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998875543
No 20
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=5.2e-24 Score=202.67 Aligned_cols=166 Identities=19% Similarity=0.284 Sum_probs=140.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+++|.+|||||||+|+|++..+...+.+|++..+.. .+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 96 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRL--RPLSYADSD 96 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHH--hHhhccCCc
Confidence 4567999999999999999999999999877777887776554 4556656667889999999988877 778899999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc---cccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 500 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY---TMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
++++|||++++.+|+.+ ..|+..+..... +.|+++|+||+|+... ....+...++++.+++.+++++||++|
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 99999999999999987 678888876644 7999999999999753 233778889999999887999999999
Q ss_pred -CHHHHHHHHHHHHhCCC
Q 006490 576 -DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~ 592 (643)
|++++|++|.+.+....
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 99999999999886443
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=5.5e-24 Score=202.00 Aligned_cols=164 Identities=19% Similarity=0.313 Sum_probs=138.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 95 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAA 95 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--HHHHhccCC
Confidence 345699999999999999999999999988888788887787777888766678889999999888777 788999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+..+.+++..++. ++++||++| |+
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 171 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNV 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999988776432 7999999999999764433 66788889999986 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 172 ~~l~~~l~~~i~ 183 (191)
T 2a5j_A 172 EEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=4.4e-24 Score=198.25 Aligned_cols=163 Identities=18% Similarity=0.307 Sum_probs=135.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHhccCCE
Confidence 35689999999999999999999999887777788887777777888866778889999999888776 6678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+.. .+....+++..++. ++++||++| |++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIE 157 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence 99999999999999999999888765432 7899999999999765433 56788889998876 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 158 ~l~~~l~~~~~ 168 (170)
T 1z08_A 158 ELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 23
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=3.8e-24 Score=198.55 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=125.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+|+|++......+.++.+.+.....+...+....+.+||++|++.+.... ...+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL-QDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh-hhhhhccCCEEE
Confidence 5899999999999999999999888777666655566666777777667788899999998776521 456688999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+++.+..|+..+....... ++|+++|+||+|+.+.+.. .+....+++.++++ ++++||++| |++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTREL 157 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCHHHH
Confidence 9999999999999999999988766543 7999999999999754433 67788899999986 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|+++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (169)
T 3q85_A 158 FEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999775
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=9e-24 Score=198.39 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=141.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--APMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--THHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--hHHHhccCCE
Confidence 45689999999999999999999999988877788887777777777766778889999999888777 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNVK 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence 99999999999999999999988876532 7899999999999765443 66788888888886 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 164 ~l~~~l~~~~~ 174 (181)
T 2efe_B 164 EIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 25
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=1.3e-24 Score=204.39 Aligned_cols=168 Identities=23% Similarity=0.356 Sum_probs=124.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
.+..+||+|+|++|||||||+++|++..+...+.++.+.. .....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4567999999999999999999999988766654433322 233344555677889999999999889999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--------chhhhhhhHHHHhhcccceEEEeCcc
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
+|||++++.+++.+...|...++...+++|+++|+||+|+...... ....+....+.+.++. .++++|||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEECC
Confidence 9999999999999876799999887778999999999998654321 0023345666666653 379999999
Q ss_pred cCCChhHHHHHHHHHHhC
Q 006490 160 TMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~ 177 (643)
+|.|++++|+++.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=8.2e-24 Score=198.13 Aligned_cols=163 Identities=19% Similarity=0.354 Sum_probs=141.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--HHHHhccCCE
Confidence 45799999999999999999999999988777788887777777777766678889999999888776 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+...++++.+++. ++++||++| |++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVE 166 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999888776532 7999999999999764433 56788888888886 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 167 ~l~~~l~~~i~ 177 (179)
T 1z0f_A 167 DAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 27
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=206.85 Aligned_cols=171 Identities=17% Similarity=0.291 Sum_probs=137.1
Q ss_pred hccccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhh
Q 006490 416 KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495 (643)
Q Consensus 416 ~~~~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~ 495 (643)
++......+||+|+|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ +..++
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~ 93 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL--PYSFI 93 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--CGGGT
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH--HHHHH
Confidence 334456689999999999999999999999999888878877766 555666656778889999999888777 77889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeecc
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
+.+|++++|||++++.+++.+..|+..+....... ++|+++|+||+|+...+.. ......+++.++++ ++++||++
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 170 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT--RVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARE 170 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTC
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCC
Confidence 99999999999999999999999999887664433 7899999999999765444 57788899999986 99999999
Q ss_pred C-CHHHHHHHHHHHHhCCC
Q 006490 575 K-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~~~~ 592 (643)
| |++++|+.|.+.+....
T Consensus 171 ~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9 99999999999886443
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=6.1e-24 Score=196.81 Aligned_cols=161 Identities=16% Similarity=0.279 Sum_probs=141.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--HHHHhcCCCEE
Confidence 4689999999999999999999999888777788887787777877766678889999999888777 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|++++.+++.+..|+..+..... +.|+++|+||+|+...+.. .+..+.+++..+++ ++++||++| |+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSE 156 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Confidence 999999999999999999988877653 7999999999999765433 66778889999986 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
++++|.+.+.
T Consensus 157 l~~~l~~~~~ 166 (168)
T 1z2a_A 157 VFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=5.9e-24 Score=197.20 Aligned_cols=161 Identities=22% Similarity=0.298 Sum_probs=138.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+|+|+++.+...+.++.+..+....+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--hHHhccCCCEE
Confidence 4689999999999999999999999888777778777777777777766778889999999888776 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNE 158 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 9999999999999999999888776432 7899999999999764433 56777888888876 999999999 9999
Q ss_pred HHHHHHHHH
Q 006490 580 VFSRIIWAA 588 (643)
Q Consensus 580 l~~~l~~~~ 588 (643)
+|++|.+.+
T Consensus 159 l~~~i~~~~ 167 (170)
T 1r2q_A 159 IFMAIAKKL 167 (170)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999998765
No 30
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=7.3e-24 Score=200.77 Aligned_cols=164 Identities=21% Similarity=0.366 Sum_probs=141.1
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--TTAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--GGGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--HHHhccCCC
Confidence 345799999999999999999999999988777778777777777777766678889999999888776 678899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+..+++++.+++. ++++||++| |+
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 172 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV 172 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999988776422 7999999999999765443 56788899999986 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 173 ~~l~~~l~~~i~ 184 (189)
T 2gf9_A 173 KQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=4.3e-24 Score=197.58 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=129.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+.+||+++|++|||||||+|+|+++.+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999999887666544333222 3334556678899999999999989999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
||++++.+++.+.. |...+... ..++|+++|+||+|+...+.. ..+....+...++. .+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence 99999999998874 77777553 358999999999999765443 23445666666643 37999999999999999
Q ss_pred HHHHHHHH
Q 006490 168 FYYAQKAV 175 (643)
Q Consensus 168 ~~~i~~~~ 175 (643)
++++.+.+
T Consensus 158 ~~~l~~~i 165 (167)
T 1c1y_A 158 FYDLVRQI 165 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=1.2e-23 Score=195.09 Aligned_cols=162 Identities=21% Similarity=0.310 Sum_probs=139.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+|+|++..+...+.++.+..+....+...+....+.+||++|.+.+..+ ...+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcc--cHhhCcCCCEE
Confidence 4589999999999999999999999987777788777777777777766678889999999888777 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHH
Confidence 9999999999999999999888776432 7899999999999765443 66788888888876 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|++|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988763
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=9.7e-24 Score=195.21 Aligned_cols=162 Identities=20% Similarity=0.332 Sum_probs=136.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+|+|+++.+...+.+|++..+. ..+...+....+.+||++|++.+..+ +..+++.+|+++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence 589999999999999999999999888777777776553 45666766778889999999888776 678889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+.+.+.. .+....+++.++..+++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 9999999999999999988887754333 7999999999999765443 667788888884345999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998763
No 34
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=4.3e-24 Score=200.11 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=122.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+|+|++|||||||+++|+++.+....++..........++...+.+.+|||||++. ..+++.+|++|+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 456799999999999999999999999886643433222233344555668899999999876 468899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCCC--CCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
|||++++.+++.+.. |..++... .+++|+++|+||+|+.. .+.+ ..+....++..++. .+++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKR-CSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSS-EEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcC-CeEEEEeccccC
Confidence 999999999999884 76666442 25799999999999953 2222 33445666666643 379999999999
Q ss_pred ChhHHHHHHHHHHh
Q 006490 163 QVPDVFYYAQKAVL 176 (643)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (643)
|++++|+++.+.+.
T Consensus 155 ~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 155 NVDRVFQEVAQKVV 168 (178)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=202.18 Aligned_cols=165 Identities=17% Similarity=0.294 Sum_probs=133.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 100 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAK 100 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHHHHHHCS
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH--HHHHhcCCC
Confidence 455799999999999999999999999888777788877777777877766678889999999888777 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+..+++++.++..+++++||++| |+
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 999999999999999999998888766433 7999999999999765443 566778887753334999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 178 ~~l~~~l~~~i~ 189 (192)
T 2il1_A 178 DEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=2.3e-24 Score=203.28 Aligned_cols=165 Identities=25% Similarity=0.375 Sum_probs=132.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++.+......+++.+|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998876654443332 2233445566788999999999988888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEE
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
+|||++++.+++.+...|...++...+++|+++|+||+|+... +.+ ..+....+++.++. .++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e 160 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE 160 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence 9999999999999855799999887779999999999999743 122 23445667777653 37999
Q ss_pred eCcc-cCCChhHHHHHHHHHHh
Q 006490 156 CSAT-TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 156 ~Sa~-~~~gi~~l~~~i~~~~~ 176 (643)
|||+ +|.||+++|+.+.+.++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999998765
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.1e-24 Score=203.21 Aligned_cols=163 Identities=19% Similarity=0.355 Sum_probs=112.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.||++.++....+..+|....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--HHHHHhcCCE
Confidence 45689999999999999999999998877666677777777777777766678889999999888776 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+....+++.+++. ++++||++| |++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE 159 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999999999988776432 7899999999999865443 67788899999986 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 38
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1e-23 Score=202.73 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=129.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASC 498 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~a 498 (643)
...+||+|+|++|||||||+|+|++........ ++++.++....+.+.|....+.+||++|++.. ..+ ...+++.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l--~~~~~~~a 112 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVG 112 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH--HHCCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhH--HHHHHhhC
Confidence 456899999999999999999999865433222 45555566666777766667789999998763 334 45667899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
|++++|||++++.+|+.+..|...+....... ++|+++|+||+|+...+.. .++.+.++..+++. +++|||++| |
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~--~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g~~ 189 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHN 189 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 99999999999999999999988876543222 7999999999999764433 55667788888886 999999999 9
Q ss_pred HHHHHHHHHHHHh
Q 006490 577 LNNVFSRIIWAAE 589 (643)
Q Consensus 577 i~~l~~~l~~~~~ 589 (643)
++++|+.|++.+.
T Consensus 190 v~elf~~l~~~i~ 202 (211)
T 2g3y_A 190 VKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999774
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=1.5e-23 Score=201.53 Aligned_cols=163 Identities=23% Similarity=0.353 Sum_probs=142.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHhccCCCE
Confidence 45689999999999999999999999988888788888888777888766678889999999888777 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE 159 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence 99999999999999999999988776532 7899999999999875433 56778888888886 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (206)
T 2bcg_Y 160 DAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=200.59 Aligned_cols=163 Identities=19% Similarity=0.335 Sum_probs=141.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--TTAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--HHHhhcCCCE
Confidence 35689999999999999999999999988777788777777777777766778899999999888877 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK 159 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCHH
Confidence 99999999999999999999988776422 7899999999999765433 67788899999986 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 41
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.91 E-value=5e-24 Score=200.99 Aligned_cols=168 Identities=24% Similarity=0.342 Sum_probs=135.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
++.+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 5679999999999999999999999887666544443322 334455667889999999999988888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|||++++.+++.+...|...+....+++|+++|+||+|+..... . ...+....+...++. .++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccccccc-CCHHHHHHHHHhcCC-cEEEEec
Confidence 99999999999987669999988777899999999999875421 1 122334556666652 3799999
Q ss_pred cccCCChhHHHHHHHHHHhCCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~~ 179 (643)
|++|.|++++|+++.+.+..+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887543
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.7e-24 Score=204.13 Aligned_cols=164 Identities=19% Similarity=0.331 Sum_probs=143.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 97 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--TTAYYRGAM 97 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--HHHHHTTCC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHccCC
Confidence 346799999999999999999999999888777777777777777777777788999999999888877 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+..+.+++.+++. ++++||++| |+
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 173 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV 173 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999998876532 7999999999999765443 67788899999986 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 174 ~~l~~~l~~~i~ 185 (191)
T 3dz8_A 174 RQAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999775
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=7.9e-24 Score=195.61 Aligned_cols=161 Identities=22% Similarity=0.353 Sum_probs=136.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+|+|+++.+...+.+|+.+.+ ...+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCEEE
Confidence 58999999999999999999999988877777766544 455666656667889999999888776 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|+|++++.+++.+..|+..+....... +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDEL 156 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHHHH
Confidence 9999999999999999998887765433 7999999999998764443 66778888889886 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
+++|.+.+.
T Consensus 157 ~~~l~~~~~ 165 (167)
T 1kao_A 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=9.4e-24 Score=195.82 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=137.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--hhhhhccCcEEE
Confidence 589999999999999999999999888777788877777777777766678889999999888777 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc---c-ccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY---T-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~---~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... + ...+....+++..++. ++++||++| |+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 156 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENV 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999888776532 7999999999999754 2 2256778888888886 999999999 99
Q ss_pred HHHHHHHHHHH
Q 006490 578 NNVFSRIIWAA 588 (643)
Q Consensus 578 ~~l~~~l~~~~ 588 (643)
+++|++|.+.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-23 Score=199.24 Aligned_cols=163 Identities=23% Similarity=0.385 Sum_probs=138.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+++|++|||||||+++|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~ 92 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHH--HHHhcCCCCE
Confidence 3568999999999999999999999988777778887665 345667766678889999999888777 6778999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.... ...++..++++.+++.+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 99999999999999987 78888887654 79999999999997632 22567888999999856
Q ss_pred cEEeeeccC-CHHHHHHHHHHHHhC
Q 006490 567 PIPVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 567 ~~~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
+++|||++| |++++|++|.+.+..
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999 999999999998764
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=9.7e-24 Score=200.61 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=141.2
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|.+.+..+ +..+++.+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 98 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI--TSAYYRGA 98 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT--HHHHHTTC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhccC
Confidence 3456799999999999999999999999988888788777777777777766778889999999888776 77889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+. ..+....+++..++. ++++||++| |
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 174 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTN 174 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 9999999999999999999999888765432 789999999999976443 366778888888886 999999999 9
Q ss_pred HHHHHHHHHHHHh
Q 006490 577 LNNVFSRIIWAAE 589 (643)
Q Consensus 577 i~~l~~~l~~~~~ 589 (643)
++++|++|.+.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (193)
T 2oil_A 175 VELAFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9.8e-24 Score=200.46 Aligned_cols=163 Identities=20% Similarity=0.324 Sum_probs=141.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|.+..+....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--APMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--THHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--hHHhhccCCE
Confidence 45699999999999999999999999887777788887777777777767778899999999888877 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+...... ++|+++|+||+|+...+. ..+...++++.++++ +++|||++| |++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINIE 174 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBSHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHH
Confidence 99999999999999999999998776532 789999999999976433 366788888888876 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
+++++|.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (192)
T 2fg5_A 175 ELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=4.9e-24 Score=197.18 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA 91 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d 91 (643)
.+||+|+|++|||||||+|+|++..+....+....+......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998775443332222222344566677889999999999988889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 92 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
++++.+++.+.. |...+... ..++|+++|+||+|+...+.. ..+....+...++ .+++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--CKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--CEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHH
Confidence 999999999885 77777654 358999999999999876554 3344456666665 3799999999999999999
Q ss_pred HHHHHHh
Q 006490 170 YAQKAVL 176 (643)
Q Consensus 170 ~i~~~~~ 176 (643)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (166)
T 3q72_A 157 GVVRQIR 163 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=9.9e-24 Score=199.11 Aligned_cols=163 Identities=19% Similarity=0.338 Sum_probs=140.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHHhcCCE
Confidence 45699999999999999999999999988888788887777777777766668889999999888877 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVE 161 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence 99999999999999999999888765432 7999999999999754333 56778888888886 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|+++.+.+.
T Consensus 162 ~l~~~l~~~~~ 172 (186)
T 2bme_A 162 EAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=202.19 Aligned_cols=164 Identities=25% Similarity=0.412 Sum_probs=140.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....++|+|+|++|||||||+|+|++..+...+.+|++.++....+..+|....+.+||++|++.+..+ +..+++.+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 94 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--TTAYYRGAM 94 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--CHHHHTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCC
Confidence 455799999999999999999999999887777788887788788888866678889999999888776 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.......+....+++.++++ ++++||++| |++
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN 170 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 999999999999999999999888776542 689999999999955444467788889999986 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 171 ~l~~~l~~~~~ 181 (213)
T 3cph_A 171 EIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 51
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=7.5e-24 Score=202.69 Aligned_cols=164 Identities=21% Similarity=0.354 Sum_probs=131.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--HHHHhccCC
Confidence 345799999999999999999999999988888788887777777878766678889999999888777 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+...+.. ..+...+++..++. +++|||++| |+
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~gi 175 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV 175 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999999999888765432 7999999999999764433 56778888888886 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (200)
T 2o52_A 176 EEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 52
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=4.6e-24 Score=206.10 Aligned_cols=170 Identities=26% Similarity=0.381 Sum_probs=135.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+++|++..+...+.++.+.. .....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4567999999999999999999999988876655544433 233345566789999999999999888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc------chhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
+|||++++.+++.+...|+..++...+++|+++|+||+|+...... ....+....+...++. .+++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCC
Confidence 9999999999999876799999887778999999999998654321 0123445667777663 37999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006490 162 IQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~~ 179 (643)
.||+++|+++.+.+....
T Consensus 165 ~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999887553
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=195.32 Aligned_cols=162 Identities=18% Similarity=0.309 Sum_probs=123.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh--hhhhccHHhhccCC
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--KKILSNKEALASCD 499 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~--~~~~~~~~~~~~ad 499 (643)
..+||+|+|++|||||||+|+|++..+...+. +++.+.....+...+....+.+||++|++.. ..+ ...+++.+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS--QESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH--HHHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh--HHhhcccCC
Confidence 46899999999999999999999998876654 4444555566677766667889999998773 334 566788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+.. .+....++..++++ +++|||++| |+
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 156 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQAD--HVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQHNV 156 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence 9999999999999999999998887653322 7999999999999865443 56677888888876 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (175)
T 2nzj_A 157 AELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 54
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=9.5e-24 Score=198.05 Aligned_cols=164 Identities=18% Similarity=0.357 Sum_probs=138.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 83 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGHG 83 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHhhCCE
Confidence 45689999999999999999999999888777778777655 55666655677889999999888776 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+....... +.|+++|+||+|+...+.. .+....++...++. ++++||++| |++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNVD 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHH
Confidence 999999999999999999998885544333 7899999999999765444 66778888888886 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 006490 579 NVFSRIIWAAEH 590 (643)
Q Consensus 579 ~l~~~l~~~~~~ 590 (643)
++|++|.+.+..
T Consensus 161 ~l~~~l~~~~~~ 172 (181)
T 2fn4_A 161 EAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=199.81 Aligned_cols=164 Identities=18% Similarity=0.302 Sum_probs=142.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--hHHHhccCCEE
Confidence 4689999999999999999999999988777788877777777777766778899999999888776 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|+|++++.+++.+..|+..+....... ++|+++|+||+|+.......+....+++..++. ++++||++| |++++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHHHH
Confidence 99999999999999999998887654333 799999999999965444467788888888886 999999999 99999
Q ss_pred HHHHHHHHhC
Q 006490 581 FSRIIWAAEH 590 (643)
Q Consensus 581 ~~~l~~~~~~ 590 (643)
|++|.+.+..
T Consensus 169 ~~~l~~~~~~ 178 (195)
T 1x3s_A 169 FEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=2.4e-23 Score=194.73 Aligned_cols=167 Identities=16% Similarity=0.283 Sum_probs=136.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|++.++....+..++....+.+||++|++.+..+ +..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh--HHHHHhcCCE
Confidence 35689999999999999999999999887777788877777777777766678889999999888777 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+....... ..+.|+++|+||+|+.......+...++++.....+++++||++| |++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998887654310 117899999999999854445677788887554445999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 163 ~l~~~l~~~~~ 173 (177)
T 1wms_A 163 AAFEEAVRRVL 173 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=2.4e-23 Score=196.90 Aligned_cols=162 Identities=20% Similarity=0.359 Sum_probs=136.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+ ...++..+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTT--HHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHH--HHHHHhcCCEE
Confidence 468999999999999999999999988777777775533 344556656667788999999988877 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+.......+....+++.++++ ++++||++| |++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVDDA 156 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 99999999999999999999888765444 799999999999987665678888999999986 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|++|.+.+.
T Consensus 157 ~~~l~~~~~ 165 (189)
T 4dsu_A 157 FYTLVREIR 165 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 58
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.91 E-value=1.1e-23 Score=198.28 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=133.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
...+.+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 356679999999999999999999999887766555443332 3334445567788899999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc-cCCC
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMIQ 163 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~--~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~g 163 (643)
++|||++++.+++.+. .|...+.. ...++|+++|+||+|+...+.+ ..+....++..++ .+++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCCC
Confidence 9999999999999988 48777754 2358999999999999875554 3445677778777 479999999 9999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
++++|+.+.+.+.
T Consensus 169 v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 169 VDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 59
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=201.61 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=127.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||+|++.+... ..+++.+|++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45679999999999999999999999988776555444332 33345566788999999999887664 67999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc-ccCC
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTMI 162 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~ 162 (643)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .++++||| ++|.
T Consensus 97 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFG--CLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcC--CcEEEEeecCccc
Confidence 999999999999988 5888887642 58999999999999765444 2344566777776 37999999 8999
Q ss_pred ChhHHHHHHHHHHh
Q 006490 163 QVPDVFYYAQKAVL 176 (643)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (643)
||+++|+.+.+.+.
T Consensus 172 gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 172 HVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999988764
No 60
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5e-24 Score=203.88 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=130.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
......+||+|+|++|||||||+|+|++..+.....++.+... ....++...+.+.+|||||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3345568999999999999999999999887655443333222 22334455678999999999999888889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+..+.++...+ .++++|||++|.|
T Consensus 101 ~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDN 175 (201)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCC
Confidence 999999999999999887 5888887654 47899999999999754443 2334456666655 3699999999999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
|+++|+++.+.+.
T Consensus 176 v~~l~~~l~~~i~ 188 (201)
T 2ew1_A 176 VEKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=3.4e-23 Score=198.52 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=137.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-----------------------------
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN----------------------------- 471 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~----------------------------- 471 (643)
+..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999999887777888877777777777544
Q ss_pred --------EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490 472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543 (643)
Q Consensus 472 --------~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~ 543 (643)
..+.+||++|++.+..+ +..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI--VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT--HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHHH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECC
Confidence 67889999999888776 7788999999999999999999999999998887753 58999999999
Q ss_pred CCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
|+.......+.+.++++..++. ++++||++| |++++|++|.+.+.
T Consensus 158 D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Confidence 9433334467888899999885 999999999 99999999998764
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=8.8e-24 Score=195.52 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=128.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
++.+||+++|++|||||||+|+|++..+....+++.+... ....+....+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4578999999999999999999999887666555443332 333455566789999999999998899999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+. .|...+.... .++|+++|+||+|+...+.. . .+....+...++ .+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRADQWN--VNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccCcc-C-HHHHHHHHHHcC--CeEEEeCCCCCCCHHH
Confidence 99999999999987 4887776643 38999999999999765443 2 334556666665 3699999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (168)
T 1u8z_A 157 VFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 63
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=5e-24 Score=199.55 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=137.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC-CcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g-~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
..+||+|+|++|||||||+|+|++..+...+.||++.++....+..++ ....+.+||++|++.+..+ +..+++.+|+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 82 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--LDKYIYGAQG 82 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--HHHHHTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--hhHHHhhCCE
Confidence 468999999999999999999999887766667887777777787775 2467889999999888776 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
+++|||++++.+++.+..|+..+........ +.| +++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 160 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTGDSV 160 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence 9999999999999999999888876432100 345 8999999999764433 56788889999986 999999999 99
Q ss_pred HHHHHHHHHHHhCC
Q 006490 578 NNVFSRIIWAAEHP 591 (643)
Q Consensus 578 ~~l~~~l~~~~~~~ 591 (643)
+++|++|.+.+...
T Consensus 161 ~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 161 FLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988643
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=4e-24 Score=205.29 Aligned_cols=165 Identities=25% Similarity=0.380 Sum_probs=132.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+|+|++..+...+.++.+.. .....++...+.+.+|||||++.+......+++.+|++|
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4556899999999999999999999998866644433322 233345566788999999999998888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC------------CccchhhhhhhHHHHhhcccceEEE
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
+|||++++.+++.+...|...++...++.|+++|+||+|+... +.+ ..+....+++.++. .++++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e 181 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE 181 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCC-CEEEE
Confidence 9999999999999855799999887778999999999999742 122 23445667777653 36999
Q ss_pred eCcc-cCCChhHHHHHHHHHHh
Q 006490 156 CSAT-TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 156 ~Sa~-~~~gi~~l~~~i~~~~~ 176 (643)
|||+ +|.||+++|+.+.+.++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999988764
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=4.2e-23 Score=196.05 Aligned_cols=164 Identities=13% Similarity=0.260 Sum_probs=140.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceE-EEEEEcCCC---------cEEEEEEecCCchhhhhhhc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKILS 490 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~-~~~v~~~g~---------~~~~~i~d~~g~~~~~~~~~ 490 (643)
...+||+|+|++|||||||+|+|++..+...+.+|.+.++. ...+...+. ...+.+||++|++.+..+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-- 86 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL-- 86 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH--
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH--
Confidence 45699999999999999999999999887777777777666 566666644 568889999999888777
Q ss_pred cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEE
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIP 569 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 569 (643)
+..+++.+|++++|+|++++.+++.+..|+..+....... ++|+++|+||+|+...+.. .+...++++.++++ +++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 163 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFE 163 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEE
Confidence 7788999999999999999999999999999888765423 7999999999999764433 67788889999986 999
Q ss_pred eeeccC-CHHHHHHHHHHHHh
Q 006490 570 VSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+||++| |++++|++|.+.+.
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999 99999999998774
No 66
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=1.7e-23 Score=197.29 Aligned_cols=160 Identities=18% Similarity=0.292 Sum_probs=132.2
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+|+|++|||||||+|+|+++.+...+.+| ...+ ...+...|....+.+||++|++.+. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence 3456799999999999999999999999988777666 3333 3666777666778899999987654 67889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC--cc-ccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YT-MAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
|++++|||++++.+|+.+..|+..+....... +.|+++|+||+|+.. .+ ...+...++++.++..++++|||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGG--GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence 99999999999999999999999998764322 789999999999952 22 23677889999998445999999999
Q ss_pred -CHHHHHHHHHHHHh
Q 006490 576 -DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 -~i~~l~~~l~~~~~ 589 (643)
|++++|++|.+.+.
T Consensus 165 ~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 165 LNVERVFQDVAQKVV 179 (184)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 99999999999765
No 67
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=202.37 Aligned_cols=166 Identities=27% Similarity=0.367 Sum_probs=126.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+++|++..+...++++.+... ....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 56679999999999999999999999887766555443322 23334445678889999999999888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEe
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (643)
+|||++++.+++.+...|+..+....+++|+++|+||+|+.... .. ...+....+...++. .++++|
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~ 174 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKP-VPEEAAKLLAEEIKA-ASYIEC 174 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCC-CCHHHHHHHHHHHTC-SEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhccccccc-CCHHHHHHHHHhcCC-cEEEEE
Confidence 99999999999998756999998877799999999999987531 11 123445666666652 369999
Q ss_pred CcccCCChhHHHHHHHHHHh
Q 006490 157 SATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||++|.||+++|+++.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988765
No 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=201.09 Aligned_cols=164 Identities=18% Similarity=0.295 Sum_probs=129.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 102 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI--AKSYFRKAD 102 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH--HHHHHHHCS
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh--HHHHHhhCC
Confidence 455799999999999999999999999887777777777777777777766678889999999888777 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------cc-ccHHHHHHHHHHhCCCCcEEeee
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------YT-MAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~------~~-~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
++|+|||++++.+++.+..|+..+...... +.|+++|+||+|+.. .+ ...+....+++..++. +++|||
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA 178 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA 178 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence 999999999999999999999888765432 789999999999963 12 2256778888889986 999999
Q ss_pred ccC-CHHHHHHHHHHHHh
Q 006490 573 KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~ 589 (643)
++| |++++|++|.+.+.
T Consensus 179 ~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999 99999999998875
No 69
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=198.89 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=130.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
...+.+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345679999999999999999999999887655444333322 223344445889999999999888889999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
+|+|||++++.+++.+. .|+..+....+++|+++|+||+|+...... ..+....+...++ .+++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG--IQLFETSAKENVNVE 159 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHH
Confidence 99999999999999987 599999887778999999999998765444 2344566666666 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~~~ 170 (181)
T 3tw8_B 160 EMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 70
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=195.21 Aligned_cols=162 Identities=23% Similarity=0.245 Sum_probs=118.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCc--chhhhHHhhccCCEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV 86 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i 86 (643)
...+||+|+|++|||||||+|+|++..+....++...+. .....+....+.+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 356899999999999999999999988765544422222 23334455567899999999887 456667889999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++|||++++.+++.+. .|...+... ..++|+++|+||+|+...+.+ .. +....+...++ .++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~~-~~~~~~~~~~~--~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCREV-SV-EEGRACAVVFD--CKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTCCS-CH-HHHHHHHHHHT--SEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhcccccc-CH-HHHHHHHHHcC--CeEEEEecCCCCCH
Confidence 9999999999999988 488877664 348999999999999876554 32 33455666665 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (175)
T 2nzj_A 157 AELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=206.37 Aligned_cols=167 Identities=28% Similarity=0.374 Sum_probs=115.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999988766544433322 2333455567789999999999998888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCc
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
|||++++.+++.+...|...+....+++|+++|+||+|+...... ....+....+++.++. .++++|||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-VAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-CEEEEecC
Confidence 999999999999876799999887778999999999999764210 0122344566666652 36999999
Q ss_pred ccCCChhHHHHHHHHHHhC
Q 006490 159 TTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~~~ 177 (643)
++|.||+++|+++.+.+..
T Consensus 191 ~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 72
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.91 E-value=8.7e-24 Score=198.61 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=133.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+.+||+|+|++|||||||+|+|+++.+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 3578999999999999999999998888777665554433 333444556789999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+.. |...+... ..++|+++|+||+|+...+.+ ..+....++..++. +++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHHH
Confidence 999999999999884 87777543 247999999999999766554 34556777777763 799999999999999
Q ss_pred HHHHHHHHHhCCC
Q 006490 167 VFYYAQKAVLHPT 179 (643)
Q Consensus 167 l~~~i~~~~~~~~ 179 (643)
+|+.+.+.+....
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887554
No 73
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=1.8e-23 Score=193.35 Aligned_cols=160 Identities=21% Similarity=0.337 Sum_probs=113.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|++|||||||+|+|.+....... ++.+..+ ...+...+....+.+||++|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhh--hhhhhhhCCEEE
Confidence 479999999999999999999987765443 3333333 344556666778889999999988777 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
+|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+.. .+....++...+++ ++++||++| |++++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQAL 154 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHHHH
Confidence 9999999999999999999887764333 7999999999999865443 66778888888886 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
|++|.+.+.
T Consensus 155 ~~~l~~~~~ 163 (166)
T 3q72_A 155 FEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 74
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=1.2e-23 Score=196.97 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=132.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+....+++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 44579999999999999999999999987766555444332 3334455578899999999998888899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+....+.+.++ .+++++||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG--LLFLEASAKTGENVE 166 (179)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTHH
T ss_pred EEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999999887 5888887654 58999999999999754443 2344566666665 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 167 ~l~~~l~~~i~ 177 (179)
T 1z0f_A 167 DAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=1.8e-23 Score=195.81 Aligned_cols=162 Identities=20% Similarity=0.361 Sum_probs=139.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--SHHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence 4589999999999999999999999888877788877777777777766678889999999888777 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+.+.. .+....+++..++. ++++||++| |+++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGS---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 9999999999999999999888765432 7999999999999765443 56777888888886 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
++++|.+.+.
T Consensus 167 l~~~l~~~~~ 176 (179)
T 2y8e_A 167 LFRRVAAALP 176 (179)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 76
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=2.9e-23 Score=191.99 Aligned_cols=162 Identities=23% Similarity=0.402 Sum_probs=134.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHH--HHHHhhcCCEE
Confidence 3589999999999999999999999887777777766553 33455655667889999999888777 67888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+...+.. .+....+++..+++ ++++||++| |+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDK 156 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHH
Confidence 99999999999999999999888765543 7999999999999765433 66788888888986 999999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+|+++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (168)
T 1u8z_A 157 VFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=1.7e-23 Score=198.16 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=131.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+.....++.+.+. .........+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 3458999999999999999999999987665444344333 22334455788999999999999889999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+..+.+++.++ .+++++||++|.|+++
T Consensus 100 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 100 LMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG--FEFFEASAKENINVKQ 174 (189)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence 999999999999887 4888887654 58999999999999765443 2344567777776 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 175 l~~~l~~~i~ 184 (189)
T 2gf9_A 175 VFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 78
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.91 E-value=1.8e-23 Score=200.26 Aligned_cols=165 Identities=24% Similarity=0.362 Sum_probs=131.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 34589999999999999999999998876664443332 22333444556789999999999988888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|||++++.+++.+...|...++...+++|+++|+||+|+..... . ...+....+++.++. .++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEP-VRSEEGRDMANRISA-FGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCc-CCHHHHHHHHHhCCC-cEEEEee
Confidence 99999999999996679999988777899999999999976421 1 122344556666653 2699999
Q ss_pred cccCCChhHHHHHHHHHHh
Q 006490 158 ATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~ 176 (643)
|++|.||+++|+++.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 79
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=1.3e-23 Score=199.45 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=129.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
......+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 3456679999999999999999999999887655433333222 23344455688999999999998888999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
++|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+ ..+..+.++..++ .+++++||++|.|
T Consensus 96 ~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFMETSAKTACN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTT
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--CEEEEEeCCCCCC
Confidence 999999999999999987 488888664 358999999999999764443 2344566666665 3799999999999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
|+++|+++.+.+.
T Consensus 171 i~~l~~~l~~~i~ 183 (191)
T 2a5j_A 171 VEEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 80
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=202.78 Aligned_cols=165 Identities=18% Similarity=0.264 Sum_probs=127.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34468999999999999999999999887655433333222 2233444457899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|++||+||+|+...+.+ . .+....+++.++. .++++|||++|.||+
T Consensus 106 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~-~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 106 ILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELREV-S-LAEAQSLAEHYDI-LCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC-SEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccccc-C-HHHHHHHHHHcCC-CEEEEEeCCCCCCHH
Confidence 9999999999999988 5888887654 68999999999999765444 2 3445666676652 268999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++|+++.+.+..
T Consensus 182 ~l~~~l~~~i~~ 193 (201)
T 2hup_A 182 EAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=4.6e-24 Score=204.86 Aligned_cols=166 Identities=23% Similarity=0.323 Sum_probs=130.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
..+.+||+|+|++|||||||+++|+++.+.....++..... ....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 46679999999999999999999999888766555443322 33445566777889999999999889999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc----------hhhhhhhHHHHhhcccceEEEeC
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
+|||++++.+++.+...|...++...+++|+++|+||+|+....... ...+....+++.++. .++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC-cEEEEee
Confidence 99999999999999767999998877889999999999987643200 122334556666653 3699999
Q ss_pred cccCCChhHHHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~ 175 (643)
|++|.||+++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999988754
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-23 Score=203.59 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=134.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--TSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--HHHHhccCCE
Confidence 45689999999999999999999999988888888888787777878766678889999999888777 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+|+|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+.. .+....+++..++. ++++||++| |++
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENVD 164 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999988776432 7899999999999764433 56778888888876 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 006490 579 NVFSRIIWAAEH 590 (643)
Q Consensus 579 ~l~~~l~~~~~~ 590 (643)
++|++|.+.+..
T Consensus 165 ~l~~~l~~~i~~ 176 (223)
T 3cpj_B 165 KAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 83
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=197.67 Aligned_cols=164 Identities=19% Similarity=0.283 Sum_probs=133.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++.+..+ ..+++.+|+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~~ 94 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAHA 94 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCCE
Confidence 45699999999999999999999999888777788877653 34555656677889999999877654 468899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeee-ccC-CH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSM-KSK-DL 577 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa-~~g-~i 577 (643)
+++|||++++.+|+.+..|+..+.........+.|+++|+||+|+...+.. .++..++++.+++. +++||| ++| |+
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccccH
Confidence 999999999999999999999887653210017999999999999764433 67788899999986 999999 899 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|+.|.+.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 84
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=1.9e-23 Score=196.97 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=135.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.||....+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhcCCCcE
Confidence 45689999999999999999999999888777787776553 34566666778889999999888776 6778899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+|+.+ ..|+..+..... +.|+++|+||+|+..+ ....++..++++.++..+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 9999999999999988 678888877653 7999999999999742 122567888999988556
Q ss_pred cEEeeec-cC-CHHHHHHHHHHHHh
Q 006490 567 PIPVSMK-SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 567 ~~~vSa~-~g-~i~~l~~~l~~~~~ 589 (643)
+++|||+ +| |++++|+.+.+.+.
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHh
Confidence 9999999 68 99999999998765
No 85
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=203.18 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=130.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
...++.+||+|+|++|||||||+|+|++..+...+.++.+.. .....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345678999999999999999999999999876655544332 2334445667889999999999998899999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+|+|||++++.+++.+. .|...+... ..++|+++|+||+|+.....+ ..+....++..++. +++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCCCC
Confidence 99999999999999988 588888654 347899999999999765544 33445667777763 799999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006490 164 VPDVFYYAQKAVLHP 178 (643)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (643)
|+++|+++.+.+...
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987644
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=3.6e-23 Score=195.99 Aligned_cols=165 Identities=18% Similarity=0.311 Sum_probs=137.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-hhhccHHhhccC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASC 498 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-~~~~~~~~~~~a 498 (643)
....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+....+.+||++|++.+. .+ +..+++.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~ 94 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM--VQHYYRNV 94 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT--HHHHHTTC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh--hHHHhcCC
Confidence 3456999999999999999999999999888887888877877788887666788999999998887 55 67788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-- 575 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-- 575 (643)
|++++|||++++.+++.+..|+..+....... +.|+++|+||+|+...+.. .+..+.+++..++. ++++||++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 171 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND 171 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence 99999999999999999999999988775333 7999999999999765433 66788889999986 999999996
Q ss_pred --CHHHHHHHHHHHHh
Q 006490 576 --DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 --~i~~l~~~l~~~~~ 589 (643)
|++++|++|.+.+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 69999999887653
No 87
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=1.4e-23 Score=202.63 Aligned_cols=165 Identities=18% Similarity=0.351 Sum_probs=138.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+++|++..+...+.||+++.+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 83 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRL--RPLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHH--HHhhccCCCE
Confidence 45689999999999999999999999888777788876653 44566766678889999999888776 6678999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc---------cHHHHHHHHHHhCCCCcEEe
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM---------AVQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~v 570 (643)
+++|||++++.+|+.+. .|+..+..... +.|+++|+||+|+..... ..+...++++.++..++++|
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999987 79888887654 799999999999976433 36677888999997569999
Q ss_pred eeccC-CHHHHHHHHHHHHhCCC
Q 006490 571 SMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
||++| |++++|++|.+.+..+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC-
T ss_pred cCCCCCCHHHHHHHHHHHHhhhh
Confidence 99999 99999999999887554
No 88
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=1.6e-23 Score=194.29 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=131.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
.+.+||+|+|++|||||||+|+|++..+.....++.+.+. ....+......+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 3568999999999999999999999987666444444333 33344556688999999999999888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+... .++.|+++|+||+|+...+.. ..+....+...++ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--AIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence 999999999999886 588888765 468899999999999765443 2344566666665 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+++++.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=1.3e-23 Score=194.26 Aligned_cols=160 Identities=22% Similarity=0.303 Sum_probs=128.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+.+||+|+|++|||||||+|+|+++.+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999988766654443332 23344555567799999999999988899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
||++++.+++.+.. |...+... ..++|+++|+||+|+...+.. ..+....+...++ .+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--CPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--CCEEEecCCCCcCHHHH
Confidence 99999999998874 66666543 248999999999998755443 2344556666665 36999999999999999
Q ss_pred HHHHHHHH
Q 006490 168 FYYAQKAV 175 (643)
Q Consensus 168 ~~~i~~~~ 175 (643)
++++.+.+
T Consensus 157 ~~~l~~~~ 164 (167)
T 1kao_A 157 FAEIVRQM 164 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 90
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=4.5e-23 Score=197.95 Aligned_cols=164 Identities=23% Similarity=0.395 Sum_probs=139.1
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....++|+|+|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~ 87 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGE 87 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHH--HHHHHhhCC
Confidence 345799999999999999999999999887777777776553 44556655667889999999888777 678889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+++.+..|+..+....... +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi 164 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANV 164 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCCH
Confidence 9999999999999999999999988765433 7999999999999765433 66788888889986 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 165 ~~l~~~l~~~i~ 176 (206)
T 2bov_A 165 DKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999774
No 91
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=1.6e-23 Score=197.54 Aligned_cols=164 Identities=20% Similarity=0.290 Sum_probs=130.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..++.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 356679999999999999999999999887766555443332 3334445567899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+....+.+.++ .+++++||++|.|+
T Consensus 94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC--CeEEEeCCCCCCCH
Confidence 9999999999999887 4877776643 38999999999999765443 2344556666665 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 169 ~~l~~~l~~~i~ 180 (187)
T 2a9k_A 169 DKVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=201.36 Aligned_cols=163 Identities=22% Similarity=0.252 Sum_probs=122.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRAD 84 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad 84 (643)
....+||+|+|++|||||||+|+|++.. +...++++...+. ....+++..+.+.+|||+|.+. +......+++.+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 4556999999999999999999999754 4444444333322 3334555567789999999876 4445567788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
++|+|||++++.+++.+.. |...+... ..++|+|||+||+|+...+.+ .. +..+.++..++ .++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~-~e~~~~a~~~~--~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-SV-SEGRACAVVFD--CKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CH-HHHHHHHHHHT--CEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eH-HHHHHHHHHcC--CEEEEEeCCCCC
Confidence 9999999999999999884 88777653 347999999999999765444 33 33345556665 369999999999
Q ss_pred ChhHHHHHHHHHHh
Q 006490 163 QVPDVFYYAQKAVL 176 (643)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (643)
||+++|+++.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 93
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=199.44 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=126.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchh-hhHHhhccCCE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA 85 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ 85 (643)
....+||+|+|++|||||||+++|++..+. ...+++...+. ....++...+.+.+|||+|++.+.. ....+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 345689999999999999999999865432 22333332322 3334555678899999999987654 66788999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+ . .+....++..++ .++++|||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~a~~~~--~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV-S-LEEGRHLAGTLS--CKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc-C-HHHHHHHHHHhC--CEEEEEcCCCCCC
Confidence 999999999999999884 888887643 48999999999999866554 3 334556776665 3799999999999
Q ss_pred hhHHHHHHHHHHhC
Q 006490 164 VPDVFYYAQKAVLH 177 (643)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (643)
|+++|+++.+.+..
T Consensus 175 v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 175 TRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 94
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=1.6e-23 Score=194.20 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
++.+||+|+|++|||||||+|+|+++.+.....++.+.+. ....+...++.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4568999999999999999999999887665444443332 33344556788999999999999888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+... .+++|+++|+||+|+...+.. . .+....+....+ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKRAV-D-FQEAQSYADDNS--LLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccccc-C-HHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 999999999999987 488777654 468999999999998754443 2 234455666655 3799999999999999
Q ss_pred HHHHHHHHH
Q 006490 167 VFYYAQKAV 175 (643)
Q Consensus 167 l~~~i~~~~ 175 (643)
+++++.+.+
T Consensus 159 l~~~i~~~~ 167 (170)
T 1r2q_A 159 IFMAIAKKL 167 (170)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999998764
No 95
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=4.4e-23 Score=193.26 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=127.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+|+|+++.+.. +.||+++.+ ...+..++....+.+||++|++. ..+++.+|++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCEE
Confidence 46899999999999999999999998876 667777544 55566676667788999999865 3467889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC--Ccc-ccHHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK--PYT-MAVQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~--~~~-~~~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++|||++++.+|+.+..|+..+.........++|+++|+||+|+. ..+ ...+...++++..+..+++++||++| |+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 999999999999999998766655433211278999999999994 222 23667778888774334999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|+.+.+.+.
T Consensus 157 ~~lf~~l~~~~~ 168 (178)
T 2iwr_A 157 DRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 96
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=199.59 Aligned_cols=164 Identities=21% Similarity=0.298 Sum_probs=133.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..++.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 356679999999999999999999999988776655444432 3334445567899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.....+ . .+....+...++ .+++++||++|.||
T Consensus 90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQV-S-VEEAKNRAEQWN--VNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHT--CEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccccc-c-HHHHHHHHHHhC--CeEEEEeCCCCCCH
Confidence 9999999999999987 5888887654 38999999999999765444 2 334556666665 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 165 ~~l~~~l~~~i~ 176 (206)
T 2bov_A 165 DKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 97
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=5e-23 Score=197.87 Aligned_cols=167 Identities=17% Similarity=0.276 Sum_probs=139.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|++.++....+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--HHHHHhCCcE
Confidence 45689999999999999999999999988888788877777778888866778899999999888776 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDS-GYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+|+|+|++++.+++.+..|+..+....... ..+.|+++|+||+|+.......+....++......+++++||++| |++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988887654210 017899999999999854444667777777444335999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 164 ~l~~~l~~~~~ 174 (207)
T 1vg8_A 164 QAFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 98
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=9.2e-24 Score=200.66 Aligned_cols=164 Identities=19% Similarity=0.316 Sum_probs=125.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999999887655444333322 2233444567899999999999988899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..++... .++|+++|+||+|+...+.+ ..+..+.+.+.+.. .++++|||++|.||+
T Consensus 103 ilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 103 ILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCHH
Confidence 9999999999999987 5888887654 47999999999999765444 23345666666533 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 179 ~l~~~l~~~i~ 189 (192)
T 2il1_A 179 EIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 99
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=1.6e-23 Score=194.04 Aligned_cols=162 Identities=20% Similarity=0.265 Sum_probs=130.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999999887665444333222 22334455678999999999988888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
+|||++++.+++.+.. |...+.....+.|+++|+||+|+...+.. ..+..+.+.+.++ .+++++||++|.|++++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--LRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHH
Confidence 9999999999998874 88888765568999999999998764443 2344566777766 37999999999999999
Q ss_pred HHHHHHHHh
Q 006490 168 FYYAQKAVL 176 (643)
Q Consensus 168 ~~~i~~~~~ 176 (643)
++++.+.+.
T Consensus 158 ~~~l~~~~~ 166 (168)
T 1z2a_A 158 FKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 100
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.8e-23 Score=193.91 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=128.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
+.+||+++|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999887665444444332 333445567789999999999998899999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCC---CccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
|||++++.+++.+.. |+..+... ..+.|+++|+||+|+... ..+ ..+....+...++ .+++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKG--LLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHT--CEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCH
Confidence 999999999999884 88777654 368999999999998754 222 3344456666665 37999999999999
Q ss_pred hHHHHHHHHHH
Q 006490 165 PDVFYYAQKAV 175 (643)
Q Consensus 165 ~~l~~~i~~~~ 175 (643)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=5.1e-23 Score=193.21 Aligned_cols=167 Identities=18% Similarity=0.335 Sum_probs=127.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC-CCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
+..+||+|+|.+|||||||+|+|++..+...+.+|++.++....+..+ +....+.+||++|++.+..+ +..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--hHHHhhcCC
Confidence 457899999999999999999999998887777888777777777776 34567889999999888776 677889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHHhCCCCcEEeeeccC-
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKSK- 575 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSa~~g- 575 (643)
++++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.... ...+...++++..+..+++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999999999999888765421 01178999999999996432 23567777887555445999999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|++++|++|.+.+.
T Consensus 164 gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 164 NVDTAFEEIARSAL 177 (182)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 102
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=197.46 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=132.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4568999999999999999999999887666444333333 22334445578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+....++..++ .+++++||++|.|+++
T Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 94 VVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHH
Confidence 999999999999987 4888886653 47899999999999876554 3344566777776 3799999999999999
Q ss_pred HHHHHHHHHhC
Q 006490 167 VFYYAQKAVLH 177 (643)
Q Consensus 167 l~~~i~~~~~~ 177 (643)
+|+++.+.+..
T Consensus 169 l~~~l~~~i~~ 179 (196)
T 3tkl_A 169 SFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 103
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.90 E-value=1.6e-23 Score=194.37 Aligned_cols=162 Identities=17% Similarity=0.262 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4568999999999999999999999887655443333322 33344556778999999999988888888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ . .+....+++.++ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERHV-S-IQEAESYAESVG--AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHHH
Confidence 999999999999887 5888886543 47999999999999765444 2 344566777766 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 159 l~~~l~~~~~ 168 (170)
T 1z08_A 159 LFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.6e-23 Score=200.07 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=129.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
+..+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 3457999999999999999999999887666544433332 333444556789999999999998888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc-----------cchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|||++++.+++.+...|...+....+++|+++|+||+|+..... . ...+....++..++. .++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP-VRTDDGRAMAVRIQA-YDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC-CCHHHHHHHHHhcCC-CEEEEee
Confidence 99999999999986679999988777999999999999875411 1 122334455555552 2699999
Q ss_pred cccCCChhHHHHHHHHHHhCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~ 178 (643)
|++|.||+++|+++.+.+..+
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 105
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.8e-23 Score=198.59 Aligned_cols=163 Identities=19% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..+.+||+|+|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||.+.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 35579999999999999999999999987655444444433 3334455678999999999999989999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....+++.++ .++++|||++|.|++
T Consensus 100 ilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--AIVVETSAKNAINIE 174 (192)
T ss_dssp EEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--CEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCcCHH
Confidence 9999999999999987 5888887654 47999999999999754433 2344566777666 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++++++.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (192)
T 2fg5_A 175 ELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 106
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=197.77 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=130.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 44568999999999999999999999887665444333322 3334455678899999999999988999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....+....+ .+++++||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNG--LLFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999998887 4888886653 58999999999999765443 2334455666655 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (193)
T 2oil_A 177 LAFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 107
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=4.6e-23 Score=193.54 Aligned_cols=164 Identities=21% Similarity=0.261 Sum_probs=130.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999887665433333222 2333445578899999999999988999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+.. ..+....++..++ .+++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG--LFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHH
Confidence 9999999999999887 5888887653 58999999999999765544 2344566666665 369999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++++++.+.+..
T Consensus 164 ~l~~~l~~~~~~ 175 (181)
T 2efe_B 164 EIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 108
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=3.9e-23 Score=198.05 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=132.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34568999999999999999999999987665444443332 2334445578899999999999988889999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...... ..+....++..++ .+++++||++|.||+
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVK 159 (203)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 9999999999999887 4888887654 58999999999999765544 3344566777776 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 109
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=9.1e-24 Score=197.78 Aligned_cols=165 Identities=20% Similarity=0.193 Sum_probs=128.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccC-CceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
..+.+||+|+|++|||||||+|+|++..+...+.++.+... ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999999887544333332211 2222322 24889999999999998999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhcC---CCCc-EEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-vilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
+|+|||++++.+++.+. .|+..+.... .+.| +++|+||+|+...+.. ..+....+++.++ .+++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG--FSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCC
Confidence 99999999999998887 5888886632 2455 8999999999764443 2344566666665 37999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 006490 162 IQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (643)
.||+++|+++.+.+...
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999887643
No 110
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=198.37 Aligned_cols=164 Identities=18% Similarity=0.343 Sum_probs=128.6
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+|+|.+|||||||+++|++..+...+.+|+.+.+. ..+...+....+.+||++|++.+..+ +..+++.+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 92 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKL--RPLCYTNT 92 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSS--GGGGGTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHH--hHhhcCCC
Confidence 3456799999999999999999999999887777778776553 44555655567789999999888777 66789999
Q ss_pred CEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCC
Q 006490 499 DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGI 564 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~ 564 (643)
|++++|||++++.+|+.+. .|+..+..... +.|+++|+||+|+... ....+....+++.+++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 9999999999999999987 69888887654 7999999999999752 1235678888999998
Q ss_pred CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 565 EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 565 ~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.++++|||++| |++++|++|.+.+.
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 55999999999 99999999999875
No 111
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=1e-22 Score=187.75 Aligned_cols=161 Identities=19% Similarity=0.347 Sum_probs=135.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEE
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~il 502 (643)
.+||+++|.+|||||||+|+|++..+...+.+|+...+ ...+...+....+.+||++|++.+..+ ...++..+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHhhccCCEEE
Confidence 47999999999999999999999988777767766544 344555655667889999999877776 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHHH
Q 006490 503 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 503 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~ 581 (643)
+|+|++++.+++.+..|+..+....... +.|+++|+||+|+.......+...++++.++++ ++++||++| |+++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 9999999999999999998887765433 799999999999987555577888899999986 999999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
++|.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T 2ce2_X 157 YTLVREIR 164 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 112
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=1.5e-23 Score=194.56 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=117.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-hhHHhhccCCEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL 88 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~ 88 (643)
.+||+|+|++|||||||+|+|++..+... .+++.........++...+.+.+|||||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999997765433 2222222224444556678899999999988765 56678899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCC--CCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~--~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+.. |+..+..... ++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcC--CcEEEecCccCCCHHH
Confidence 999999999999984 7777766543 8999999999999765544 3344566777776 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (169)
T 3q85_A 157 LFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 113
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=5.5e-23 Score=195.27 Aligned_cols=163 Identities=21% Similarity=0.336 Sum_probs=125.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-hhhhccHHhhccCC
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCD 499 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ad 499 (643)
..+||+|+|++|||||||+|+|++........ ++++.++....+.++|....+.+||++|.+.. ..+ ...+++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~--~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT--GGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH--HHhhcccCC
Confidence 45899999999999999999999754332222 34555555566777766667788999998763 334 456778999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.||+.+..|...+....... +.|+++|+||+|+...+.. .+....++...++. +++|||++| |+
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~~v 159 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHNV 159 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCC--CCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCCCH
Confidence 9999999999999999999988777653322 7899999999999764433 45566777778875 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|+.+.+.+.
T Consensus 160 ~~lf~~l~~~~~ 171 (192)
T 2cjw_A 160 KELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999774
No 114
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=5.9e-23 Score=193.72 Aligned_cols=163 Identities=23% Similarity=0.397 Sum_probs=137.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 92 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEG 92 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHH--HHHHhccCCE
Confidence 35689999999999999999999999887777777776553 34455655567889999999888777 6788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|||++++.+++.+..|+..+....... ++|+++|+||+|+...+.. .+....+++.++++ ++++||++| |++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHH
Confidence 999999999999999999999888766543 7999999999999765433 66788888889986 999999999 999
Q ss_pred HHHHHHHHHHh
Q 006490 579 NVFSRIIWAAE 589 (643)
Q Consensus 579 ~l~~~l~~~~~ 589 (643)
++|++|.+.+.
T Consensus 170 ~l~~~l~~~i~ 180 (187)
T 2a9k_A 170 KVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999775
No 115
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=3.9e-23 Score=196.27 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=130.3
Q ss_pred CCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCC---------ceeEEEEeCCCCCc
Q 006490 4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPD---------RVPVTIIDTSSSLE 71 (643)
Q Consensus 4 ~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~i~Dt~G~~~ 71 (643)
|........+||+|+|++|||||||+|+|++..+.....++.+.... ...+... .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 33344566799999999999999999999998876554333332211 1222222 57899999999999
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 149 (643)
+...+..+++.+|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+....+...++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 158 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG- 158 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC-
Confidence 9888999999999999999999999999887 5888887654 58999999999999764443 2344566766665
Q ss_pred cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 150 IETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 150 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
.+++++||++|.|++++|+++.+.+.
T Consensus 159 -~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 -IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999988764
No 116
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=7e-24 Score=199.34 Aligned_cols=163 Identities=21% Similarity=0.378 Sum_probs=122.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+++|++|||||||+++|++..+...+.||+++.+... +...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGATVNLGLWDTAGQEDYNRL--RPLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC-------CEEECCCC-CTTTTT--GGGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEECCEEEEEEEEECCCChhhhhh--HHhhccCCCE
Confidence 3468999999999999999999999888777777776544322 333444556679999999888777 6788899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-----------cHHHHHHHHHHhCCCCcE
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-----------AVQDSARVTQELGIEPPI 568 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~ 568 (643)
+++|||++++.+++.+. .|+..+..... +.|+++|+||+|+..... ..+...++++.+++.+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999987 68888877653 799999999999876433 356778889999975599
Q ss_pred EeeeccC-CHHHHHHHHHHHHhC
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
+|||++| |++++|+.|.+.+..
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 9999999 999999999998754
No 117
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=2.4e-23 Score=201.77 Aligned_cols=165 Identities=12% Similarity=0.209 Sum_probs=136.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC----------cEEEEEEecCCchhhhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKIL 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~----------~~~~~i~d~~g~~~~~~~~ 489 (643)
....+||+|+|.+|||||||+|+|++..+...+.+|.+.++....+...+. ...+.+||++|++.+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~- 100 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL- 100 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH-
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH-
Confidence 456799999999999999999999998886666567666666655655544 567889999999888777
Q ss_pred ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcE
Q 006490 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPI 568 (643)
Q Consensus 490 ~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 568 (643)
+..+++.+|++|+|||++++.+++.+..|+..+....... ++|+++|+||+|+...+.. .+..+++++.+++. ++
T Consensus 101 -~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ 176 (217)
T 2f7s_A 101 -TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIP-YF 176 (217)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EE
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EE
Confidence 7788999999999999999999999998887775543212 7999999999999765443 67788899999986 99
Q ss_pred EeeeccC-CHHHHHHHHHHHHh
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+|||++| |++++|++|.+.+.
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999 99999999998764
No 118
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=5.4e-23 Score=192.87 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=124.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (643)
......+||+|+|++|||||||+|+|++..+.. .+.++.+... ....+....+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 345667999999999999999999999988753 3333333322 2223445567899999999999888888999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...... ..+....+.+.++ .+++++||++|.
T Consensus 85 d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--LPFMETSAKTGL 159 (180)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--CCEEECCTTTCT
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcC--CeEEEEeCCCCC
Confidence 9999999999999999887 5888887654 58999999999999875544 2344566666665 379999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006490 163 QVPDVFYYAQKAVLH 177 (643)
Q Consensus 163 gi~~l~~~i~~~~~~ 177 (643)
|++++++++.+.+..
T Consensus 160 gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 160 NVDLAFTAIAKELKR 174 (180)
T ss_dssp THHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=5.9e-23 Score=193.61 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=135.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+++|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHhccCCcEE
Confidence 4689999999999999999999998887777777776553 34455656667789999999888776 66788999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490 502 IFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~ 567 (643)
++|||++++.+++... .|+..+..... +.|+++|+||+|+.... ...+....+++.++..++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999887 68888877654 78999999999986532 124567778888887559
Q ss_pred EEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 568 IPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
++|||++| |++++|+.+.+.+..+
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhcc
Confidence 99999999 9999999999988644
No 120
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=2.2e-23 Score=195.20 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHH
Q 006490 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE 78 (643)
Q Consensus 1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 78 (643)
|+.......++.+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 82 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 82 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH
Confidence 3333333445679999999999999999999999887665444333222 22334455678999999999999889999
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
+++.+|++|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.. . .+....+...++ .+++++|
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~S 157 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-S-TEEGERKAKELN--VMFIETS 157 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGGCCS-C-HHHHHHHHHHHT--CEEEEEB
T ss_pred HhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccCcC-C-HHHHHHHHHHcC--CeEEEEe
Confidence 999999999999999999999887 488777654 358999999999999765443 2 233455556655 3799999
Q ss_pred cccCCChhHHHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~ 175 (643)
|++|.|++++++++.+.+
T Consensus 158 a~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTTTBSHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988754
No 121
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=200.70 Aligned_cols=164 Identities=19% Similarity=0.323 Sum_probs=118.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~ 108 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRL--RPLFYPDASV 108 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC-----------------CEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHHhccCCE
Confidence 3468999999999999999999999988777777776544 344556656667889999999888777 6778899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.... ...++...+++.+++.+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence 99999999999999987 68888877654 79999999999997643 12456788889999855
Q ss_pred cEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 567 PIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 567 ~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
+++|||++| |++++|+.|.+.+...
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999 9999999999987633
No 122
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=4.8e-23 Score=197.78 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=135.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|++|||||||+|+|++..+...+.+|+...+. ..+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHH--HHhhccCCCE
Confidence 45689999999999999999999999988777777776553 44666766778899999999888777 6778899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+|+.+ ..|+..+..... +.|+++|+||+|+... ....++..++++.++..+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999998 678888877653 7999999999999742 122567888998988545
Q ss_pred cEEeeec-cC-CHHHHHHHHHHHHh
Q 006490 567 PIPVSMK-SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 567 ~~~vSa~-~g-~i~~l~~~l~~~~~ 589 (643)
+++|||+ +| |++++|+.|.+.+.
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHh
Confidence 9999999 57 99999999998764
No 123
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.90 E-value=6.8e-23 Score=196.91 Aligned_cols=163 Identities=17% Similarity=0.263 Sum_probs=131.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45579999999999999999999999987665444333322 2233445567899999999999988899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ..+....+....+ .+++++||++|.||+
T Consensus 85 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVE 159 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence 9999999999999988 4888887653 57999999999999875544 2334556666665 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (206)
T 2bcg_Y 160 DAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 124
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=9.2e-23 Score=195.26 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=136.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|.+..+...+.||+...+... +...+....+.+||++|++.+..+ +..+++.+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 99 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDV 99 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCchhHHHH--HHHhcCCCCE
Confidence 3568999999999999999999999998888878877766543 556655678889999999888777 6678899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.... ...+....+++.++..+
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 9999999999999988 578888777543 79999999999997642 22556778888888856
Q ss_pred cEEeeeccC-CHHHHHHHHHHHHh
Q 006490 567 PIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 567 ~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+++|||++| |++++|++|.+.+.
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999 99999999998764
No 125
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=198.09 Aligned_cols=163 Identities=18% Similarity=0.264 Sum_probs=123.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45579999999999999999999999887655443333222 3334555668899999999999988999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCC------CCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. .+.+ ..+..+.++..++ .+++++||+
T Consensus 105 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~ 179 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYG--ALFCETSAK 179 (199)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHT--CEEEECCTT
T ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcC--CeEEEeeCC
Confidence 9999999999999987 5888887643 4799999999999862 2222 2344556666665 379999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (643)
+|.||+++|+++.+.+.
T Consensus 180 ~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=9.3e-24 Score=205.40 Aligned_cols=171 Identities=16% Similarity=0.252 Sum_probs=136.0
Q ss_pred CCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490 2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEE 79 (643)
Q Consensus 2 ~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 79 (643)
..+........+||+|+|++|||||||+|+|+.+.+...+.++.+.+. ....+....+.+.+|||||++.+...+..+
T Consensus 5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 84 (221)
T 3gj0_A 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84 (221)
T ss_dssp -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence 334445567789999999999999999999777665544333333333 334455667899999999999988889999
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++|+|||++++.+++.+. .|+..+.....++|+++|+||+|+...... .....+....+ .++++|||+
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~Sa~ 157 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--LQYYDISAK 157 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT--CEEEECBGG
T ss_pred HhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC--CEEEEEeCC
Confidence 99999999999999999999988 599999887779999999999999765332 23345555555 379999999
Q ss_pred cCCChhHHHHHHHHHHhCCC
Q 006490 160 TMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~ 179 (643)
+|.||+++|+++.+.+....
T Consensus 158 ~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999886543
No 127
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.7e-23 Score=193.09 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+.+||+++|++|||||||+|+|++..+.....++.+ .+..........+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 468999999999999999999999887655333333 2333334445567899999999999988899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
||++++.+++.+.. |...+.+. .+++|+++|+||+|+...+.. ..+....+...++ .+++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWK--CAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhC--CeEEEecCCCCcCHHH
Confidence 99999999988774 77666553 247999999999998765444 2233455666665 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+++++.+.+.
T Consensus 157 l~~~l~~~~~ 166 (172)
T 2erx_A 157 LFQELLNLEK 166 (172)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 128
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=5.7e-23 Score=192.15 Aligned_cols=164 Identities=21% Similarity=0.261 Sum_probs=126.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44568999999999999999999999887655444333332 2233444557899999999999988888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++|||++++.+++.+. .|...+.... .++|+++|+||+|+.. ... ..+....++..... .+++++||++|
T Consensus 84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGD-YPYFETSAKDA 158 (177)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCcccc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 9999999999999887 5888876532 5789999999999973 222 23344555553333 37999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006490 162 IQVPDVFYYAQKAVLH 177 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (643)
.|++++|+++.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 129
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=3e-23 Score=196.56 Aligned_cols=163 Identities=19% Similarity=0.311 Sum_probs=126.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcch-hhhHHhhccCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRAD 84 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad 84 (643)
..++.+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999999887665443333222 233344556889999999998887 77889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC-
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM- 161 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 161 (643)
++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+..+.++..++ .+++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHS--MPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcC--CEEEEEeCCcCC
Confidence 9999999999999999884 88888664 358999999999999765443 2344566666665 36999999999
Q ss_pred --CChhHHHHHHHHHH
Q 006490 162 --IQVPDVFYYAQKAV 175 (643)
Q Consensus 162 --~gi~~l~~~i~~~~ 175 (643)
.||+++|+++.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGSCHHHHHHHHC---
T ss_pred cccCHHHHHHHHHHHH
Confidence 99999999987764
No 130
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=4.4e-23 Score=196.63 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=129.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
..+.+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++. ...+..+++.+|++|
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 45679999999999999999999999988766554443322 3344555678899999999987 677889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC-Ch
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi 164 (643)
+|||++++.+++.+. .|...+... ..++|+++|+||+|+...+.+ ..+....++..++ .++++|||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--CAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--SEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--CeEEEECCCcCCcCH
Confidence 999999999999987 488777653 358999999999999765444 2344556666665 379999999999 99
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (196)
T 2atv_A 179 TEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 131
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=3.7e-23 Score=195.16 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=130.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
.....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 345679999999999999999999999887665444333222 223344445789999999999998888999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.. . .+....++...+ .+++++||++|.|+
T Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 86 ALLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADREV-T-FLEASRFAQENE--LMFLETSALTGENV 160 (186)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence 99999999999999887 488887654 358999999999999754443 2 233455666665 37999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 161 ~~l~~~l~~~~~ 172 (186)
T 2bme_A 161 EEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 132
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=4.2e-23 Score=200.27 Aligned_cols=170 Identities=17% Similarity=0.182 Sum_probs=136.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCc-EEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~-~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|.+.......+...++. ..+.+||++|++.+..+ ...++..+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--KDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--CHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--HHHHhhcCC
Confidence 457999999999999999999999988876666776655544444444333 67889999999888776 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...... .+....++...++. +++|||++| |+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv 162 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHNF 162 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCCH
Confidence 999999999999999999999988776543 6899999999999875333 56666777777776 999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCCC
Q 006490 578 NNVFSRIIWAAEHPHLNIP 596 (643)
Q Consensus 578 ~~l~~~l~~~~~~~~~~~~ 596 (643)
+++|++|.+.+.......+
T Consensus 163 ~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 163 GLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp THHHHHHHHHHHCCTTCCB
T ss_pred HHHHHHHHHHHhccccccc
Confidence 9999999999876655543
No 133
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=7.6e-23 Score=191.87 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=129.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
..+.+||+|+|++|||||||+|+|++..+...++++.+... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999999988776555444332 22334444578999999999999889999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 88 LTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
+|||++++.+++.+.. |+..+ +.. ..++|+++|+||+|+...+.+ . .+....+....+ .+++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV-P-RSEASAFGASHH--VAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc-C-HHHHHHHHHHcC--CeEEEecCCCCCCHH
Confidence 9999999999999884 77666 433 358999999999999765444 2 334455666654 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 161 ~l~~~l~~~~~ 171 (181)
T 2fn4_A 161 EAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 134
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=3.7e-23 Score=194.21 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=117.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
...+.+||+|+|++|||||||+|+|++..+.....++.+... ....+. ...+.+.+|||||.+.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 345679999999999999999999999887665444333222 223333 34678999999999988888889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++|+|||++++.+++.+. .|...+.... .++|+++|+||+|+...... ...+....+...... .+++++||+
T Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAK 160 (182)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTT
T ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecC
Confidence 999999999999999887 4887775532 58999999999999644332 223445566654443 369999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (643)
+|.||+++|+++.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 161 NAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 135
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.90 E-value=4.7e-23 Score=197.76 Aligned_cols=161 Identities=20% Similarity=0.319 Sum_probs=133.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+++|.+|||||||+++|++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+ ...+++.+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence 4569999999999999999999999988877777776543 445666766777789999999988877 6778999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHHhCCCC
Q 006490 501 TIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEP 566 (643)
Q Consensus 501 illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~ 566 (643)
+++|||++++.+++.+. .|+..+..... ++|+++|+||+|+..... ..+....+++.+++.+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 99999999999999987 78888877653 799999999999976432 2556778889999877
Q ss_pred cEEeeeccC-CHHHHHHHHHHHH
Q 006490 567 PIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 567 ~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
+++|||++| |++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 999999999 9999999998753
No 136
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.90 E-value=1.1e-23 Score=198.35 Aligned_cols=163 Identities=15% Similarity=0.262 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 34579999999999999999999998876544222222211 2233444558899999999998888888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+ ..+....+++.++ .+++++||++|.||+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVE 159 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHH
Confidence 99999999999999874 88888765 357999999999999765544 2344566777776 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 137
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=1.1e-22 Score=187.49 Aligned_cols=160 Identities=21% Similarity=0.332 Sum_probs=129.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
+.+||+++|++|||||||+|+|++..+.....++.+.. .....+....+.+.+|||||.+.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999988766655443332 23334445567899999999999888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
||++++.+++.+. .|...+.... .++|+++|+||+|+... .. ..+....+.+.++ .+++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYG--IPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcC--CeEEEecCCCCCCHHHH
Confidence 9999999999886 5888886653 37999999999998763 22 3345566777766 37999999999999999
Q ss_pred HHHHHHHHh
Q 006490 168 FYYAQKAVL 176 (643)
Q Consensus 168 ~~~i~~~~~ 176 (643)
++++.+.+.
T Consensus 156 ~~~l~~~~~ 164 (166)
T 2ce2_X 156 FYTLVREIR 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 138
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.90 E-value=1.7e-22 Score=193.63 Aligned_cols=161 Identities=16% Similarity=0.258 Sum_probs=126.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCc----------------------------
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDR---------------------------- 58 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------- 58 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 45679999999999999999999999987666554443322 111222212
Q ss_pred ---------eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490 59 ---------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (643)
Q Consensus 59 ---------~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~ 129 (643)
+.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+. .|+..+.... ++|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~-~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISS-NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHS-CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhC-CCcEEEEEECCC-cc
Confidence 78999999999999889999999999999999999999999887 5888887654 499999999999 33
Q ss_pred CCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
.... ..+.+..++...+ .+++++||++|.|++++|+++.+.+.
T Consensus 161 ~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 161 KFQV--DILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp -CCS--CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccC--CHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3333 2344566666665 37999999999999999999987654
No 139
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=9.4e-23 Score=196.14 Aligned_cols=164 Identities=21% Similarity=0.333 Sum_probs=130.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|.+|||||||+|+|++..+...+.||++..+... +...+....+.+||++|++.+..+ +..+++.+|++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 100 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVI 100 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTT--GGGGCTTCCEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHH--HHhhcCCCCEE
Confidence 358999999999999999999999998877777777655443 556655677889999999888776 67788999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCCCc
Q 006490 502 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPP 567 (643)
Q Consensus 502 llv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~ 567 (643)
++|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.... ...+....+++..+..++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 999999999999988 578888877543 79999999999997642 124567778888888569
Q ss_pred EEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 568 IPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
++|||++| |++++|++|.+.+..+.
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999 99999999999886543
No 140
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=9.4e-24 Score=200.40 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=132.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+...+..+++.+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4568999999999999999999999887665333232222 33445567889999999999988888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.. ..+..+.++..++ .+++++||++|.||++
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLG--FDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence 9999999999999884 999887754 58999999999999765444 3344566777776 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 176 l~~~l~~~i~ 185 (191)
T 3dz8_A 176 AFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 141
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=2.2e-22 Score=190.70 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=128.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|.+|||||||+|+|++..+...+.+|++..+ ...+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~~ 96 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF 96 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHH--HHHhhCcCCEE
Confidence 458999999999999999999999988777767766544 344555655667889999999887776 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l 580 (643)
++|||++++.+++.+..|+..+....... ++|+++|+||+|+.......+...++++.++++ ++++||++| |++++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSD--DVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 99999999999999999998887765433 789999999999987444577888899999986 999999999 99999
Q ss_pred HHHHHHHHh
Q 006490 581 FSRIIWAAE 589 (643)
Q Consensus 581 ~~~l~~~~~ 589 (643)
+++|.+.+.
T Consensus 174 ~~~l~~~~~ 182 (190)
T 3con_A 174 FYTLVREIR 182 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 142
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=1.1e-22 Score=192.16 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=128.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+.+||+|+|++|||||||+|+|++..+...++++..... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 3578999999999999999999999888777655443322 333455566778999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
|||++++.+++.+. .|...+... ..++|+++|+||+|+.... ...+....+...++ .+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~---~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSRT---VDTKQAQDLARSYG--IPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSSCS---SCHHHHHHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcccc---cCHHHHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 99999999999987 487777653 3589999999999997432 23455667777776 3799999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 156 l~~~l~~~~~ 165 (189)
T 4dsu_A 156 AFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 143
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=7e-23 Score=195.51 Aligned_cols=162 Identities=18% Similarity=0.235 Sum_probs=121.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCE
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA 85 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 85 (643)
.......||+|+|++|||||||+++|++..+.. .+.++.+.... .+...++.+.+|||||++.+...+..+++.+|+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 445667899999999999999999999999877 54444443222 345678899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhc------C---CCCcEEEEEecccCCCCCccchhhhhhhHHH-----Hhhcccc
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQFREIE 151 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~------~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 151 (643)
+|+|||++++.+++.+.. |+..+... . .++|+++|+||+|+...... .+....+. +..+ .
T Consensus 90 ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~--~ 163 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDHP--F 163 (199)
T ss_dssp EEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTSC--E
T ss_pred EEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCCe--e
Confidence 999999999999999885 65555432 1 27999999999999765322 11111111 1222 3
Q ss_pred eEEEeCcccCCChhHHHHHHHHHHh
Q 006490 152 TCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 152 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++++|||++|.||+++|+++.+.+.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHH
Confidence 6899999999999999999998765
No 144
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=7.9e-23 Score=189.95 Aligned_cols=165 Identities=19% Similarity=0.335 Sum_probs=133.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+.+||+++|++|||||||+|+|++..+...+.+|....+. ..+...+....+.+||++|++.+..+ ...++..+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 78 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF 78 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHhcccCCEE
Confidence 3589999999999999999999998887666676665443 33445545567889999999888776 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|++++.+++.+..|+..+.+..... .+.|+++|+||+|+...+.. ......++...+++ ++++||++| |+++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKE 156 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHHH
Confidence 99999999999998888888777653211 16899999999999765433 55677888888876 999999999 9999
Q ss_pred HHHHHHHHHhCC
Q 006490 580 VFSRIIWAAEHP 591 (643)
Q Consensus 580 l~~~l~~~~~~~ 591 (643)
+|++|.+.+..+
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999877543
No 145
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=6.6e-23 Score=190.18 Aligned_cols=160 Identities=16% Similarity=0.274 Sum_probs=125.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 358999999999999999999999887555333333222 233444556789999999999888888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. ... ..+....+++.++ .+++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELG--IPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-CCS--CHHHHHHHHHHHT--CCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-Ccc--CHHHHHHHHHHcC--CeEEEEECCCCCCHHHH
Confidence 99999999998887 5888887654 5899999999999943 222 3344566777776 37999999999999999
Q ss_pred HHHHHHHHh
Q 006490 168 FYYAQKAVL 176 (643)
Q Consensus 168 ~~~i~~~~~ 176 (643)
++++.+.+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 146
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.89 E-value=9.9e-23 Score=193.04 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=120.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..++.+||+++|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 356679999999999999999999999887666554333222 3334445567899999999998888888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
++|||+++..+++.+. .|...+.... .++|+++|+||+|+... .. ..+....+.+.++ .+++++||++|.|+
T Consensus 97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 170 (190)
T 3con_A 97 LCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-TV--DTKQAHELAKSYG--IPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHT--CCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-cC--CHHHHHHHHHHcC--CeEEEEeCCCCCCH
Confidence 9999999999999887 5888886643 37999999999998762 22 3345566777766 26999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++++++.+.+.
T Consensus 171 ~~l~~~l~~~~~ 182 (190)
T 3con_A 171 EDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 147
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=8.5e-23 Score=194.16 Aligned_cols=163 Identities=18% Similarity=0.250 Sum_probs=131.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
..+.+||+|+|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34568999999999999999999999987665444443332 3334455678899999999999888899999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+... .. ..+....+...++ .+++++||++|.||
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHS--MLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCccc-cc--CHHHHHHHHHHcC--CEEEEecCCCCCCH
Confidence 9999999999999888 5888887653 47999999999999532 22 2334456666665 36999999999999
Q ss_pred hHHHHHHHHHHhC
Q 006490 165 PDVFYYAQKAVLH 177 (643)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (643)
+++|+++.+.+..
T Consensus 166 ~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 166 QCAFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 148
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.2e-22 Score=193.80 Aligned_cols=169 Identities=17% Similarity=0.323 Sum_probs=137.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...++|+|+|.+|||||||+|+|++..+...+.+|....+. ..+...+....+.+||++|++.+..+ +..++..+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAM--QRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHH--HHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHH--HHHhhccCCE
Confidence 35689999999999999999999999887777677665443 33445555667889999999888776 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
+++|||++++.+++.+..|+..+....... .+.|+++|+||+|+.......+....+++.+++. ++++||++| |+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Confidence 999999999999998888887776543210 1689999999999987544567778888889986 999999999 9999
Q ss_pred HHHHHHHHHhCCCCC
Q 006490 580 VFSRIIWAAEHPHLN 594 (643)
Q Consensus 580 l~~~l~~~~~~~~~~ 594 (643)
+|++|.+.+......
T Consensus 161 l~~~l~~~~~~~~~~ 175 (199)
T 2gf0_A 161 LFQELLTLETRRNMS 175 (199)
T ss_dssp HHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999988655433
No 149
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.89 E-value=4.2e-23 Score=198.47 Aligned_cols=166 Identities=21% Similarity=0.246 Sum_probs=104.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEcCCC--cEEEEEEecCCchhhhhhhccHHhhc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA 496 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~~g~--~~~~~i~d~~g~~~~~~~~~~~~~~~ 496 (643)
...+||+|+|.+|||||||+|+|++. .+...+.+|++.++....+..++. ...+.+||++|++.+..+ +..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--ISQYWN 95 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--HSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--HHHHHh
Confidence 45689999999999999999999998 666666677776677777888755 678899999999888777 677889
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC-cccc-HHHHHHHHHHhCCCCcEEeeecc
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-YTMA-VQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
.+|++++|||++++.+|+.+..|+..+.........+.|+++|+||+|+.. .+.. .+....+++.+++. ++++||++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 174 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP 174 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence 999999999999999999999999999876541001799999999999986 4433 67888899999976 99999999
Q ss_pred -C-CHHHHHHHHHHHHh
Q 006490 575 -K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 -g-~i~~l~~~l~~~~~ 589 (643)
| |++++|++|.+.+.
T Consensus 175 ~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFY 191 (208)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 9 99999999999775
No 150
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=3.2e-23 Score=197.50 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCee--eCC-cccCCceeEEEEeC
Q 006490 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTR--LPP-DFYPDRVPVTIIDT 66 (643)
Q Consensus 1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~-----------~~~~~~--~~~-~~~~~~~~~~i~Dt 66 (643)
|+.+........+||+|+|++|||||||++.+.+. +...+.+ +.+... ... .++...+.+.+|||
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence 33333445566799999999999999999766654 3333211 111111 112 44566788999999
Q ss_pred CCCCcchhhhHHhhccCCEEEEEEECC------CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh
Q 006490 67 SSSLENKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM 140 (643)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~il~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~ 140 (643)
||++.+...+..+++.+|++|+|||++ +..+++.+. .|+..++....++|+++|+||+|+... . ..+.+
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~ 156 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--L--PVEMV 156 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--C--CHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--c--CHHHH
Confidence 999999999999999999999999999 445666665 477766555568999999999999764 2 23445
Q ss_pred hHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 141 GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 141 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
..++..++. .+++++||++|.||+++|+++.+.+.
T Consensus 157 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 157 RAVVDPEGK-FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHCTTCC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 666666652 26999999999999999999988764
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.6e-24 Score=207.17 Aligned_cols=164 Identities=25% Similarity=0.405 Sum_probs=131.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|.+|||||||+|+|++..+...+.++++.++....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 107 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH 107 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--SCC--CCCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhhcCC
Confidence 345799999999999999999999999887777677777787888888866678889999999888776 677889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DL 577 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i 577 (643)
++++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+.. .+....+++.++++ ++++||++| |+
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~gv 183 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNV 183 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---HHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence 999999999999999999999988765442 7899999999999765443 45677888888886 999999999 99
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 184 ~~l~~~l~~~l~ 195 (199)
T 3l0i_B 184 EQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.8e-22 Score=192.36 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=135.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++..+...+.+|++..+. ..+...+....+.+||++|++. ..+ +..+++.+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~--~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQ--REGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccc--hhhhhccCCE
Confidence 45689999999999999999999999988888787776553 3355565667788999999877 444 6778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC--CH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK--DL 577 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g--~i 577 (643)
+++|||++++.+++.+..|+..+....... ++|+++|+||+|+...+.. .++...+++.+++. +++|||++| |+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~gi 178 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNI 178 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCcCH
Confidence 999999999999999999998887754433 7999999999999764433 67788888888886 999999998 79
Q ss_pred HHHHHHHHHHHh
Q 006490 578 NNVFSRIIWAAE 589 (643)
Q Consensus 578 ~~l~~~l~~~~~ 589 (643)
+++|++|.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (196)
T 2atv_A 179 TEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998774
No 153
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.1e-23 Score=199.03 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=126.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35568999999999999999999999987655433333222 2233444458899999999999988999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+... ..++|++||+||+|+...+.+ . .+....+...++ .+++++||++|.||+
T Consensus 90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRAV-P-TEESKTFAQENQ--LLFTETSALNSENVD 164 (223)
T ss_dssp EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCCC-CCCHH
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999999987 588888765 357999999999999765444 2 334556666665 379999999999999
Q ss_pred HHHHHHHHHHhCC
Q 006490 166 DVFYYAQKAVLHP 178 (643)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (643)
++|+++.+.+...
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 154
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.89 E-value=5.3e-23 Score=196.76 Aligned_cols=163 Identities=21% Similarity=0.256 Sum_probs=122.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35568999999999999999999999887655433333222 2233444458899999999988888888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+... ..++|+++|+||+|+...+.+ . .+....++...+ .++++|||++|.||+
T Consensus 102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 102 LLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREV-T-FLEASRFAQENE--LMFLETSALTGENVE 176 (200)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999999887 588887654 358999999999999754443 2 233455666655 379999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (200)
T 2o52_A 177 EAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 155
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=2.6e-22 Score=186.45 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=121.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+.+||+++|++|||||||+|+|+++.+....|+ .+.... .+..++..+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPT-IGFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 345679999999999999999999999887654443 222222 23334789999999999998888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHH----HHhhcccceEEEeCcccC
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPI----MQQFREIETCVECSATTM 161 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~ 161 (643)
+|||++++.+++.... |+..+... ..++|+++|+||+|+...... .+....+ ....+ .+++++||++|
T Consensus 80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 153 (171)
T 1upt_A 80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRK--WQIFKTSATKG 153 (171)
T ss_dssp EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSC--EEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCc--eEEEECcCCCC
Confidence 9999999999998875 55554332 258999999999999765321 1111111 11111 26899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006490 162 IQVPDVFYYAQKAVLH 177 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~ 177 (643)
.|++++++++.+.+..
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999987653
No 156
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=1.2e-22 Score=195.30 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=127.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999987666554443332 2334445568899999999998888888999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
|+|||++++.+++.+. .|...+.... .++|+++|+||+|+.. ... ..+....+...... .+++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence 9999999999999887 5887775532 4789999999999973 222 22334555543333 36999999999
Q ss_pred CChhHHHHHHHHHHh
Q 006490 162 IQVPDVFYYAQKAVL 176 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~ 176 (643)
.|++++|+++.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 160 INVEQAFQTIARNAL 174 (207)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998765
No 157
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=4.5e-23 Score=200.07 Aligned_cols=169 Identities=15% Similarity=0.240 Sum_probs=127.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc---CCceeEEEEeCCCCCcchhhhHHhhccC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY---PDRVPVTIIDTSSSLENKGKLNEELKRA 83 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 83 (643)
......+||+|+|++|||||||+|+|++..+...+.++.+.......+. ...+.+.+|||||++.+......+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 3456679999999999999999999998887655444444333222221 2237899999999998888889999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.....+ ..+....+....+ .++++|||++|.
T Consensus 86 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKN--YEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCC--CEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 9999999999999999987 5888887653 35899999999999765444 2333445555544 369999999999
Q ss_pred ChhHHHHHHHHHHhCCCC
Q 006490 163 QVPDVFYYAQKAVLHPTA 180 (643)
Q Consensus 163 gi~~l~~~i~~~~~~~~~ 180 (643)
|++++|+++.+.+.....
T Consensus 161 gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999998865543
No 158
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=1.3e-22 Score=191.97 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=122.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+|+|++|||||||+|+|++..+.....++.+.... .+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 456799999999999999999999998876554443333322 244567899999999999888889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCCh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV 164 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi 164 (643)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... .+..+.+.... ....++++|||++|.||
T Consensus 97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 999999999999885 55555432 258999999999999764221 11111111110 01126899999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 159
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=5.2e-23 Score=200.09 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=138.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|.+|||||||+|+|+.+.+...+.+|.+.+.....+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~ 89 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQ 89 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--CHHHHTTCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--HHHHHhcCC
Confidence 345699999999999999999998877766666677776666666777766778889999999888777 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
++++|||++++.+++.+..|+..+..... ++|+++|+||+|+.+.... .....+++..++. +++|||++| |++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQ-YYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST----TCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCE-EEECBGGGTBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCcccccccc-HHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999999999999999988754 7999999999999764433 3556677888886 999999999 999
Q ss_pred HHHHHHHHHHhC
Q 006490 579 NVFSRIIWAAEH 590 (643)
Q Consensus 579 ~l~~~l~~~~~~ 590 (643)
++|++|.+.+..
T Consensus 164 ~l~~~l~~~l~~ 175 (221)
T 3gj0_A 164 KPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 160
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=2.1e-22 Score=185.68 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEEC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC 92 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~ 92 (643)
+||+++|++|||||||+|+|+++.+....|+. +... ..+...++.+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS-SCCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcC-ceeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999998876544432 2211 23445678999999999999888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-c-ccceEEEeCcccCCChhHHH
Q 006490 93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 93 ~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~gi~~l~ 168 (643)
+++.+++.+.. |+..+... ..+.|+++|+||+|+...... .+....+.... . ...++++|||++|.|++++|
T Consensus 78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999998874 66665432 358999999999999764221 11111111110 0 11258999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
+++.+.+.
T Consensus 154 ~~l~~~i~ 161 (164)
T 1r8s_A 154 DWLSNQLR 161 (164)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99988753
No 161
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=7.6e-23 Score=192.34 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=115.5
Q ss_pred CCCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 5 ~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
......+.+||+|+|++|||||||+|+|++..+. ...++.+.... .+..+++.+.+|||||++.+...+..+++.+|
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCE-EEECCSSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCCcCceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3344567799999999999999999999998872 22222222222 23335689999999999999888999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCccc
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATT 160 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~ 160 (643)
++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... ++..+.+... .. ...++++|||++
T Consensus 91 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp EEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999999999885 55555432 358999999999999764221 1111111111 11 112689999999
Q ss_pred CCChhHHHHHHHH
Q 006490 161 MIQVPDVFYYAQK 173 (643)
Q Consensus 161 ~~gi~~l~~~i~~ 173 (643)
|.|++++|+++.+
T Consensus 167 g~gi~~l~~~l~~ 179 (181)
T 2h17_A 167 GEGLCQGLEWMMS 179 (181)
T ss_dssp TBTHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 9999999998865
No 162
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=3.6e-22 Score=188.95 Aligned_cols=159 Identities=17% Similarity=0.269 Sum_probs=125.2
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
..+..+||+|+|.+|||||||+|+|++..+...+.+|.+..+. .+.. ....+.+||++|++.+..+ +..+++.+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 91 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSM--WERYCRGV 91 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHH--HHHHHccC
Confidence 3456799999999999999999999999887667677765543 2332 4577889999999988877 67888999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEee
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVS 571 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vS 571 (643)
|++++|+|++++.+++.+..|+..+....... +.|+++|+||+|+...... +++.+..+. .++++||
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGALDE----KELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCCEEEEEECCCCccCCCH----HHHHHHhChhhhccCCeeEEEEE
Confidence 99999999999999999999988876542222 7999999999999764221 223333321 1479999
Q ss_pred eccC-CHHHHHHHHHHHHh
Q 006490 572 MKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~ 589 (643)
|++| |++++|++|.+.+.
T Consensus 166 A~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999 99999999998765
No 163
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2.5e-22 Score=193.87 Aligned_cols=162 Identities=15% Similarity=0.266 Sum_probs=126.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45579999999999999999999999887555333333222 2223334457899999999998888889999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChh
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. ... ..+....++..++ .+++++||++|.||+
T Consensus 97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELG--IPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-CCS--CHHHHHHHHHHHT--CCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-ccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 9999999999998887 5888887654 4799999999999943 222 2344566666665 369999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 171 ~l~~~l~~~~~ 181 (213)
T 3cph_A 171 EIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 164
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.5e-22 Score=193.24 Aligned_cols=164 Identities=19% Similarity=0.239 Sum_probs=128.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
....+||+|+|++|||||||+|+|++..+...+.++.+. +.....++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 456799999999999999999999998876554333332 2233344555778999999999998888899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCCh
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|||++++.+++.+.. |+..+... .+++|+++|+||+|+... .. ..+....+...++ .+++++||++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWK--CAFMETSAKMNYNV 158 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHT--CEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhC--CeEEEEecCCCCCH
Confidence 9999999999988874 76666543 247899999999999753 22 2334455666665 36999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 006490 165 PDVFYYAQKAVLHP 178 (643)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (643)
+++++++.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 159 KELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999877544
No 165
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=3.6e-23 Score=198.89 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=96.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcccCC--ceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
..+||+|+|++|||||||+|+|++. .+...+.++.+... ....+... .+.+.+|||||++.+...+..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999998 66655554443212 22333343 678999999999988888889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCCC-CCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 85 AVVLTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 85 ~il~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. .+.+ ..+....+.+.++ .+++++||+
T Consensus 99 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~ 173 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNT--LDFFDVSAN 173 (208)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTT--CEEEECCC-
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcC--CEEEEeccC
Confidence 999999999999999988 5998887754 3899999999999976 4443 2344566777776 379999999
Q ss_pred c-CCChhHHHHHHHHHHh
Q 006490 160 T-MIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~-~~gi~~l~~~i~~~~~ 176 (643)
+ |.|++++|+++.+.+.
T Consensus 174 ~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ------CHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 9 9999999999988764
No 166
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.88 E-value=1.6e-22 Score=193.07 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=112.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+.+||+++|++|||||||+++|+++.+.... ++.+.+. ..+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 45689999999999999999999998764333 2233322 23334458999999999999888899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc---------------ccce
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIET 152 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 152 (643)
||++++.+++.+.. |+..+.+. ..++|+++|+||+|+... . .. +.+..+..... ...+
T Consensus 100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I-SE-ERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C-CH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C-CH-HHHHHHhCcccccccccccccccccCceEE
Confidence 99999999999885 76666442 358999999999999752 2 22 22333322111 1236
Q ss_pred EEEeCcccCCChhHHHHHHHHH
Q 006490 153 CVECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
+++|||++|.||+++|+++.+.
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998754
No 167
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.5e-22 Score=189.82 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=120.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+|+|.+|||||||+|+|+++.+. .+.||.+... ..+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 86 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTEF 86 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 45689999999999999999999988876 4456665433 333333 377889999999888777 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-----HhCCCCcEEeeeccC
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMKSK 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~g 575 (643)
+++|+|++++.+|+....|+..+....... +.|+++|+||+|+..... .++..+... ..++ ++++|||++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 162 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-HIQACCALTG 162 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhhC--CCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence 999999999999999999998887653222 799999999999976322 222222221 1233 4899999999
Q ss_pred -CHHHHHHHHHHHHhCCC
Q 006490 576 -DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~~ 592 (643)
|+++++++|.+.+..+.
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp BTHHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 99999999999886444
No 168
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.9e-22 Score=189.41 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=118.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+|+|++|||||||+|+|+++.+....++ .+.... .+..+++.+.+|||||++++...+..+++.+|++|+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5679999999999999999999998876532332 222221 2233568999999999999988999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.+.. |+..+... ..++|+++|+||+|+..... .++..+.+... +. ...++++|||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999885 76666543 35899999999999975322 12211222111 11 11268999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 006490 166 DVFYYAQKAVLHPTA 180 (643)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (643)
++++++.+.+.....
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998765443
No 169
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=190.09 Aligned_cols=161 Identities=14% Similarity=0.221 Sum_probs=119.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV 86 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 86 (643)
...+.+||+|+|++|||||||+|+|++.. +...+.++.+... ..+..+++.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 35667999999999999999999999887 4444444333222 23334568999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHhc-C---CCCcEEEEEecccCCCCCccchhhhhhhHHH--Hhhc-ccceEEEeCcc
Q 006490 87 VLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSAT 159 (643)
Q Consensus 87 l~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~Sa~ 159 (643)
|+|||++++.+++.+.. |+..+... . .++|+++|+||+|+..... .++ +.... ..+. ...++++|||+
T Consensus 95 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---SVK-VSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---HHH-HHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCC---HHH-HHHHhChhhccCCceEEEEccCC
Confidence 99999999999999885 65555443 2 4899999999999975422 222 22222 1211 11368999999
Q ss_pred cCCChhHHHHHHHHHH
Q 006490 160 TMIQVPDVFYYAQKAV 175 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~ 175 (643)
+|.||+++++++.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTBTHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=2.9e-22 Score=190.21 Aligned_cols=162 Identities=22% Similarity=0.258 Sum_probs=118.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCc-chhhhHHhhccCCE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA 85 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 85 (643)
...+||+|+|++|||||||+|+|++.. +...++++..++. ....+++..+.+.+|||+|... +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999999643 4444444333322 3334555567789999999875 44566678899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 86 il~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
+++|||++++.+++.+. .|...+... ..++|+++|+||+|+...+.+ .. +....++..++ .++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~-~~~~~~a~~~~--~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXREV-SV-SEGRAXAVVFD--XKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccccc-cH-HHHHHHHHHhC--CceEEeccccCCC
Confidence 99999999999999987 487777653 347999999999998754443 32 23344555554 3699999999999
Q ss_pred hhHHHHHHHHHHh
Q 006490 164 VPDVFYYAQKAVL 176 (643)
Q Consensus 164 i~~l~~~i~~~~~ 176 (643)
|+++|+++.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 171
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=3.4e-22 Score=189.46 Aligned_cols=156 Identities=14% Similarity=0.241 Sum_probs=116.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+.+||+++|++|||||||+++|+++.+... .++.+.+.. .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 5568999999999999999999999887543 333333332 3334458999999999999888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc----------ccceEEEeC
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVECS 157 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~S 157 (643)
||++++.+++.+.. |+..+... ..++|+++|+||+|+... . ..++ +........ ...++++||
T Consensus 98 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 98 VDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V-SEAE-LRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C-CHHH-HHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C-CHHH-HHHHhCCccccccccccccceEEEEEeE
Confidence 99999999999884 66666442 358999999999999752 1 2222 222222110 113699999
Q ss_pred cccCCChhHHHHHHHH
Q 006490 158 ATTMIQVPDVFYYAQK 173 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~ 173 (643)
|++|.||+++|+++.+
T Consensus 173 a~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TTTTBSHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHh
Confidence 9999999999998865
No 172
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.88 E-value=4.3e-22 Score=187.96 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=120.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+++|++|||||||+|+|++.. ...+.++.+.... .+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 578999999999999999999999888 3333333333222 2333578999999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-h-cccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.+.. |+..+... ..++|+++|+||+|+...... ++..+.+... . ....++++|||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999875 66555432 358999999999999764322 1111111110 0 111368999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++++++.+.+..
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 173
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=8.5e-22 Score=182.91 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=122.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|++|||||||+|+|+++.+.. +.||.+ .....+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPY--WRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGG--GGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHH--HHHHhccCCE
Confidence 456899999999999999999999987753 345554 333444444 567889999999888777 6788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK- 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g- 575 (643)
+++|+|++++.+|.....|+..+....... +.|+++|+||+|+.......+..+.+. +..++ +++++||++|
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 154 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKGT 154 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhC--CCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCCc
Confidence 999999999999999988888776543222 799999999999976432222222221 12233 4899999999
Q ss_pred CHHHHHHHHHHHHhC
Q 006490 576 DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~ 590 (643)
|++++|++|.+.+..
T Consensus 155 gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 155 GLDEAMEWLVETLKS 169 (171)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998753
No 174
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=5.8e-22 Score=189.08 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=123.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~-~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....||+|+|.+|||||||+|+|++..+.. .+.+|.+. ....++ +....+.+||++|++.+..+ +..+++.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFE--KGRVAFTVFDMGGAKKFRGL--WETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEE--eCCEEEEEEECCCCHhHHHH--HHHHHhcC
Confidence 4567899999999999999999999999888 56677663 333343 35678889999999988877 67889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-----CCCCCcEEEEEeCCCCCCccccHHHHHHHH-----HHhCCCCcE
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGED-----SGYGVPCLLIASKDDLKPYTMAVQDSARVT-----QELGIEPPI 568 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~-----~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 568 (643)
|++|+|||++++.+|+.+..|+..+...... ...++|+++|+||+|+.......+..+.+. +..++ +++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF-VIF 166 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE-EEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee-EEE
Confidence 9999999999999999999998887654210 001689999999999987533222222221 23444 489
Q ss_pred EeeeccC-CHHHHHHHHHHHHhC
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
+|||++| |++++|++|.+.+..
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHH
Confidence 9999999 999999999998753
No 175
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.88 E-value=1e-21 Score=185.39 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=123.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|++|||||||+|+|++.. ...+.||.+. ....+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSY--WRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTT--GGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 456899999999999999999999988 5555566653 33444443 467889999999888877 6788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh--------CCCCcEEeee
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL--------GIEPPIPVSM 572 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~vSa 572 (643)
+++|+|++++.+++.+..|+..+....... +.|+++|+||+|+...... +++.+.+ ++ +++++||
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa 161 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGALSC----NAIQEALELDSIRSHHW-RIQGCSA 161 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCE-EEEECCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcC--CCcEEEEEeCccCCCCCCH----HHHHHHhChhhccCCce-EEEEeeC
Confidence 999999999999999999988877643222 7999999999999764322 2222222 23 4899999
Q ss_pred ccC-CHHHHHHHHHHHHhCC
Q 006490 573 KSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~~~ 591 (643)
++| |+++++++|.+.+...
T Consensus 162 ~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 999 9999999999988643
No 176
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=3.2e-22 Score=188.12 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=117.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
...+||+++|++|||||||+++|++..+.. +.++.+.+.. .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIK--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEE--EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 567999999999999999999999886532 2222232222 2233478999999999999888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.+.. |+..+... ..++|+++|+||+|+...... ++..+.+.... ....++++|||++|.||+
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999998874 66555322 258999999999999764322 11111111110 011268999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++|+++.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (181)
T 1fzq_A 167 DGMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 177
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=3.6e-22 Score=189.63 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=115.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+|+|++|||||||+++|+++.+....|+ .+. ....+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t-~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGF--NVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEE-TTE--EEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCc-Cce--eEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35679999999999999999999998887543332 221 112344567899999999999988889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCCh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV 164 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi 164 (643)
|||++++.+++.+.. |+..+... ..++|+++|+||+|+...... .+....+.... ....++++|||++|.||
T Consensus 103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 999999999999874 66665432 258999999999999754221 11111111111 01125899999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 178
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=1.9e-22 Score=192.03 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=122.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CcccceEEEEE-EcCCCcEEEEEEecCCchhhhhh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-----------TTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI 488 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-----------t~~~~~~~~~v-~~~g~~~~~~i~d~~g~~~~~~~ 488 (643)
...+||+|+|++|||||||++.+.+.. ...+.+ |.+.++....+ ...+....+.+||++|++.+..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 456999999999999999997776643 333322 22222222222 34445667889999999888877
Q ss_pred hccHHhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490 489 LSNKEALASCDVTIFVYDSS------DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562 (643)
Q Consensus 489 ~~~~~~~~~ad~illv~D~s------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~ 562 (643)
+..+++.+|++|+|||++ +..+|+.+..|+..+..... +.|+++|+||+|+... ...+++.++++..
T Consensus 91 --~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~----~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 91 --RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD----DVPIVIQVNKRDLPDA-LPVEMVRAVVDPE 163 (198)
T ss_dssp --HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT----SSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred --HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC----CCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence 778899999999999999 45667777777776632222 8999999999999764 4467788888888
Q ss_pred CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 563 GIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 563 ~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++.+++++||++| |++++|++|.+.+.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 9845999999999 99999999999775
No 179
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=1.1e-22 Score=197.22 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCC----------ceeEEEEeCCCCCcchhhhH
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPD----------RVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~~ 77 (643)
...+||+|+|++|||||||+|+|++..+...+.++.+... ....+... .+.+.||||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4468999999999999999999999887544322222111 12233333 67899999999988888888
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
.+++.+|++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+..+.+++.++ .++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--IPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--CCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCC--CcEEE
Confidence 9999999999999999999999887 5887776543 58999999999999765443 2344566777665 36999
Q ss_pred eCcccCCChhHHHHHHHHHHh
Q 006490 156 CSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
|||++|.||+++|+++.+.+.
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 180
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=7.9e-22 Score=188.25 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=115.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+++|.++.+.. +.||.+... ..+...+ ..+.+||++|++.+..+ +..+++.+|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~ 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRV--WKNYLPAINGI 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCG--GGGGGGGCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHH--HHHHHhcCCEE
Confidence 45799999999999999999999988653 446655543 3444553 67889999999888777 67889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC----------------CC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG----------------IE 565 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~ 565 (643)
++|+|++++.+|+....|+..+.+..... ++|+++|+||+|+.. ....+++.++..... ..
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999998887643222 799999999999976 223444444443221 12
Q ss_pred CcEEeeeccC-CHHHHHHHHHHH
Q 006490 566 PPIPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 566 ~~~~vSa~~g-~i~~l~~~l~~~ 587 (643)
++++|||++| |++++|++|.+.
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999 999999998764
No 181
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=9.3e-22 Score=181.38 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEE
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ill 503 (643)
+||+++|++|||||||+|+|+++.+.. +.||.+. ....+.. ....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHH--HHHHhccCCEEEE
Confidence 589999999999999999999988754 4466553 3344444 3467889999999888776 6778999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeeccC-
Q 006490 504 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMKSK- 575 (643)
Q Consensus 504 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~~g- 575 (643)
|+|++++.+|+....|+..+....... +.|+++|+||+|+..... .+++.+..+. .++++|||++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhc--CCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999999999988876543222 789999999999976422 2233333322 13899999999
Q ss_pred CHHHHHHHHHHHHh
Q 006490 576 DLNNVFSRIIWAAE 589 (643)
Q Consensus 576 ~i~~l~~~l~~~~~ 589 (643)
|++++|++|.+.+.
T Consensus 148 gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 148 GLYEGLDWLSNQLR 161 (164)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 182
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=184.38 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=123.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~-~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
....+||+|+|.+|||||||+|+|++.. +...+.+|.+ +....+...+ ..+.+||++|++.+..+ +..+++.+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~ 91 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNL--WEHYYKEG 91 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGG--GGGGGGGC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcC
Confidence 3456999999999999999999999987 4444545554 4455566653 67888999999888877 67889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH--H---hCCCCcEEeeec
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ--E---LGIEPPIPVSMK 573 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--~---~~~~~~~~vSa~ 573 (643)
|++++|+|++++.+++.+..|+..+.........++|+++|+||+|+..... .+...+... . .++ ++++|||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPW-HICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-EEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCce-EEEEccCC
Confidence 9999999999999999999998888765432001799999999999976322 233333332 1 133 48999999
Q ss_pred cC-CHHHHHHHHHHHHh
Q 006490 574 SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~ 589 (643)
+| |++++|++|.+.+.
T Consensus 170 ~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTBTHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999999998775
No 183
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=6.3e-22 Score=186.02 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=117.9
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccC
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 498 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~a 498 (643)
.....+||+|+|.+|||||||+|+|++..+ ..+.+|.+... ..+... ...+.+||++|++.+..+ +..+++.+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 89 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNT 89 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCG--GGGGGTTC
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccC
Confidence 345579999999999999999999999987 33445655433 333344 377889999999888777 67889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHH-----HhCCCCcEEeeec
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-----ELGIEPPIPVSMK 573 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~ 573 (643)
|++++|+|++++.+++.+..|+..+....... ++|+++|+||+|+..... .+.+.+... ..++ ++++|||+
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 165 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-HIQACCAL 165 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhC--CCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCce-EEEEccCC
Confidence 99999999999999999999988877643222 799999999999976322 222222211 1222 48999999
Q ss_pred cC-CHHHHHHHHHH
Q 006490 574 SK-DLNNVFSRIIW 586 (643)
Q Consensus 574 ~g-~i~~l~~~l~~ 586 (643)
+| |++++|++|.+
T Consensus 166 ~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 166 TGEGLCQGLEWMMS 179 (181)
T ss_dssp TTBTHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHh
Confidence 99 99999999875
No 184
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=1.2e-21 Score=185.58 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=119.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+++|++|||||||+++|.++.+.. +.||.+.. ...+...+ ..+.+||++|++.+..+ +..+++.+|++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 94 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRL--WKDYFPEVNGI 94 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTS--GGGGCTTCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCCEE
Confidence 45799999999999999999999988753 44555543 34455553 77889999999888776 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh-----------CCCCcEEe
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-----------GIEPPIPV 570 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~v 570 (643)
++|+|++++.+|+....|+..+.+..... +.|+++|+||+|+.. ....++..+..... ...++++|
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhc--CCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence 99999999999999999998887643222 799999999999976 22233333332221 11148999
Q ss_pred eeccC-CHHHHHHHHHHH
Q 006490 571 SMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~ 587 (643)
||++| |++++|++|.+.
T Consensus 172 Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp BTTTTBSHHHHHHHHHTT
T ss_pred ECCcCCCHHHHHHHHHhh
Confidence 99999 999999998753
No 185
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=1.4e-21 Score=188.92 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=114.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcchh-hhHHhhccCCEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAV 86 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~i 86 (643)
..+.+||+|+|++|||||||+++|++..+...++++..... ...+... ++.+.+|||||++.+.. .+..+++.+|++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999988777665433222 2333333 68899999999998877 778889999999
Q ss_pred EEEEECCCcc-cHHHHHHHHHHHHHh---cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc--------------
Q 006490 87 VLTYACNQQS-TLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-------------- 148 (643)
Q Consensus 87 l~v~d~~~~~-s~~~~~~~~~~~l~~---~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (643)
|+|||+++.. ++......|.+.+.. ...++|+++|+||+|+...... ......+...++
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhcccccc
Confidence 9999998853 456665556666644 2347999999999999765432 111111111111
Q ss_pred ----------------------ccceEEEeCcccC------CChhHHHHHHHHH
Q 006490 149 ----------------------EIETCVECSATTM------IQVPDVFYYAQKA 174 (643)
Q Consensus 149 ----------------------~~~~~~~~Sa~~~------~gi~~l~~~i~~~ 174 (643)
...++++|||++| .||+++|+++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0236999999999 9999999998765
No 186
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=7.1e-22 Score=188.25 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=113.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceeEEEEeCCCCCcchhhh---HHhhcc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKL---NEELKR 82 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---~~~~~~ 82 (643)
...+.+||+|+|++|||||||++++.+........+...... ....+ ....+.+.+|||||++.+.... ..+++.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 456679999999999999999998887532221111111111 11112 2566889999999999887776 899999
Q ss_pred CCEEEEEEECCCc--ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc-----chhhhhhhHHHH----hhcccc
Q 006490 83 ADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFREIE 151 (643)
Q Consensus 83 ad~il~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~-----~~~~~~~~~~~~----~~~~~~ 151 (643)
+|++|+|||++++ .+++.+. .|+..+....+++|++||+||+|+...... ....+....+++ .++ .
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~ 172 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH--L 172 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC--E
T ss_pred CCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC--c
Confidence 9999999999997 5555555 366666555679999999999998653110 011222344444 222 3
Q ss_pred eEEEeCcccCCChhHHHHHHHHHH
Q 006490 152 TCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 152 ~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
++++|||++ .||+++|+.+++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 699999999 99999999998764
No 187
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=1.4e-21 Score=183.78 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=119.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+++|++|||||||+++|.+..+.. +.||.+ +....+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 456899999999999999999999986532 335544 334445544 467888999999888776 6788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-------CCcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-------EPPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~vSa~ 573 (643)
+++|+|++++.+|+....|+..+....... +.|+++|+||+|+...... +++.+.++. .++++|||+
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTAAPA----SEIAEGLNLHTIRDRVWQIQSCSAL 160 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcCcccCCCH----HHHHHHhCchhccCCceEEEEccCC
Confidence 999999999999999988888775432222 7999999999999764322 233333321 148999999
Q ss_pred cC-CHHHHHHHHHHHHh
Q 006490 574 SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~ 589 (643)
+| |++++|++|.+.+.
T Consensus 161 ~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TCTTHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99 99999999988664
No 188
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1e-23 Score=202.46 Aligned_cols=165 Identities=24% Similarity=0.334 Sum_probs=128.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.+.+||+|+|++|||||||+++|++..+.....++.... .....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 567999999999999999999999888766544433222 2333445566778899999999988888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc----------chhhhhhhHHHHhhcccceEEEeCc
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
|||++++.+++.+...|...+....+++|+++|+||+|+...... ....+....+++.++. .++++|||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vSA 186 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSA 186 (204)
Confidence 999999999999875698888877668999999999999764310 0122334455555542 26899999
Q ss_pred ccCCChhHHHHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~ 175 (643)
++|.||+++|+++.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999887654
No 189
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=2e-21 Score=184.47 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=117.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
.+..+||+|+|++|||||||+|+|+++.+.. +.||.+ +....++. ....+.+||++|++.+..+ +..+++.+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 98 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPL--WRHYFQNTQ 98 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTT--HHHHHHTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 3456999999999999999999999887653 335544 33444444 3477889999999888776 677899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeee
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 572 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa 572 (643)
++++|+|++++.+++....|+..+....... +.|+++|+||+|+..... .+++.+.++.. ++++|||
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELR--DAVLLVFANKQDMPNAMP----VSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEECcC
Confidence 9999999999999999999988876643222 799999999999976422 23334443321 3899999
Q ss_pred ccC-CHHHHHHHHHHHHh
Q 006490 573 KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~ 589 (643)
++| |++++|++|.+.+.
T Consensus 173 ~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTBTHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHh
Confidence 999 99999999998764
No 190
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=1.1e-21 Score=185.80 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=119.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+++|++|||||||+|+|+++.+....|+ .+.... .+..+++.+.+|||||++.+...+..+++.+|++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPT-VGVNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSS-TTCCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCC-CceEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 5789999999999999999999998877544333 222221 2333578999999999998888888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-c-ccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~gi~ 165 (643)
||++++.+++.... |+..+... ..++|+++|+||+|+...... .+....+.... . ...++++|||++|.|++
T Consensus 97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999998875 55555332 258999999999999764321 11111111110 0 01268999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++++++.+.+.
T Consensus 173 ~l~~~l~~~i~ 183 (189)
T 2x77_A 173 EGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 191
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=1.2e-21 Score=181.18 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc--
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK-- 81 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~-- 81 (643)
+.++|+|+|++|||||||+|+|++..+. ...+++... .....+..++..+.+|||||++.+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCC-CCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCccee-eeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 4589999999999999999999987643 234432111 1112233346789999999998764 23345554
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
++|++++|+|+++... .. .|+..+.+. ++|+++|+||+|+...... . ...+.+++.++ .+++++||++|
T Consensus 81 ~~~~~i~v~D~~~~~~---~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~SA~~~ 149 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAAKK 149 (165)
T ss_dssp CCSEEEEEEETTCHHH---HH-HHHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGGGT
T ss_pred CCCEEEEEecCCchhH---hH-HHHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhC--CCEEEEEcCCC
Confidence 8999999999987543 33 477777665 7999999999998643332 1 12456666666 37999999999
Q ss_pred CChhHHHHHHHHHH
Q 006490 162 IQVPDVFYYAQKAV 175 (643)
Q Consensus 162 ~gi~~l~~~i~~~~ 175 (643)
.|++++|+++.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 150 MGIEELKKAISIAV 163 (165)
T ss_dssp BSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988764
No 192
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=6.6e-22 Score=186.42 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=118.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCcccceEEEEEEc---CCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~~~t~~~~~~~~~v~~---~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (643)
.+||+|+|++|||||||+++|++. .+...+.+|++.++....+.. .+....+.+||++|++.+..+ ...+++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--HPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--SHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--hHHHccC
Confidence 479999999999999999999995 344445567665554444333 224557789999999988877 6788899
Q ss_pred CCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH----HHHHHHHHHhCCC---CcEE
Q 006490 498 CDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV----QDSARVTQELGIE---PPIP 569 (643)
Q Consensus 498 ad~illv~D~s~~-~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~~~~ 569 (643)
+|++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+....... +..+.+++.++++ ++++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARAS----SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT----TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC----CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 9999999999997 578889999998876543 78999999999998654332 2334555556664 3899
Q ss_pred eeeccC--CHHHHHHHHHHHHhC
Q 006490 570 VSMKSK--DLNNVFSRIIWAAEH 590 (643)
Q Consensus 570 vSa~~g--~i~~l~~~l~~~~~~ 590 (643)
+||++| |++++++.|.+.+..
T Consensus 156 ~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 156 VNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred EecccCchhHHHHHHHHHHHHhc
Confidence 999998 699999999988764
No 193
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=2.4e-21 Score=179.08 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=112.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhhc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~ 496 (643)
.++|+++|++|||||||+|+|++..+...+.|+++.+.....+... ...+.+|||+|++.+. .+ ...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~--~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHH--HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHH--HHHHHh
Confidence 4799999999999999999999987654444554444444445554 3578899999987653 22 234443
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 497 --~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
++|++++|+|+++.. ....|+..+.+. +.|+++|+||+|+...+......+++++.++++ ++++||++
T Consensus 79 ~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~SA~~ 148 (165)
T 2wji_A 79 NEKPDLVVNIVDATALE---RNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAAK 148 (165)
T ss_dssp HHCCSEEEEEEETTCHH---HHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGGG
T ss_pred cCCCCEEEEEecCCchh---HhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEEcCC
Confidence 899999999999853 345577766653 799999999999865433333567888888876 99999999
Q ss_pred C-CHHHHHHHHHHHH
Q 006490 575 K-DLNNVFSRIIWAA 588 (643)
Q Consensus 575 g-~i~~l~~~l~~~~ 588 (643)
| |++++|++|.+.+
T Consensus 149 ~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 KMGIEELKKAISIAV 163 (165)
T ss_dssp TBSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 9 9999999998865
No 194
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=1.9e-21 Score=181.96 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=115.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+.++|+|+|++|||||||+|+|++..+.....+..+.......+..++..+.+|||||++.+...+..++..+|++|
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34567899999999999999999999988765433222222222334445678999999999998888888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCCh
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|+|++++....... ++..+... ++|+++|+||+|+...... ...... ..+...++...++++|||++|.|+
T Consensus 84 ~v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANPD-RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCHH-HHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCHH-HHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 999998865444432 33444433 7999999999999763211 111111 111111211136999999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|+++.+.+.
T Consensus 159 ~~l~~~l~~~~~ 170 (178)
T 2lkc_A 159 DHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999988764
No 195
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=6.1e-21 Score=194.50 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=126.7
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch---------
Q 006490 6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK--------- 73 (643)
Q Consensus 6 ~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~--------- 73 (643)
.+..++.-.|+|+|+||||||||+|+|++..+... .++++. ......+... +..+.||||||+....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 44566778999999999999999999999986432 333221 1233334445 7899999999997644
Q ss_pred -hhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccce
Q 006490 74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET 152 (643)
Q Consensus 74 -~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (643)
.....+++.+|++|+|+|++++.+..... .|++.+... ++|+++|+||+|+..... ...+....+.+.++...+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~--~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAK--NVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGG--GGHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHH--HHHHHHHHHHHhccCCCe
Confidence 45557899999999999999998888866 478888775 899999999999974322 244556677777754557
Q ss_pred EEEeCcccCCChhHHHHHHHHHHhC
Q 006490 153 CVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 153 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
++++||++|.|++++++.+.+.+..
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999999988754
No 196
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.86 E-value=2.2e-23 Score=199.23 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=119.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
...+||+|+|++|||||||+|+|++..+.....++.+. .. ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45689999999999999999999998875542222222 22 22334445578999999999998888889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.+ ..+....++..++ .+++++||++|.||++
T Consensus 111 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 111 VVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQ 185 (199)
T ss_dssp ECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTT--CCBCCCCC---HHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcC--CeEEEEECCCCCCHHH
Confidence 999999999999987 4988887654 47999999999999765544 2234466666665 3699999999999999
Q ss_pred HHHHHHHHHh
Q 006490 167 VFYYAQKAVL 176 (643)
Q Consensus 167 l~~~i~~~~~ 176 (643)
+|+++.+.+.
T Consensus 186 l~~~l~~~l~ 195 (199)
T 3l0i_B 186 SFMTMAAEIK 195 (199)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 197
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=9.5e-22 Score=184.91 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=115.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
++.+||+|+|++|||||||+|+|+++.+....+ +.+.... .+..++..+.+|||||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTCCEE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999999877632223 2222222 2233468999999999998888889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHh-hc-ccceEEEeCcccCCChh
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP 165 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~ 165 (643)
+|++++.+++.+.. |+..+... ..++|+++|+||+|+...... ++..+.+... .. ...++++|||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 99999999999875 66666543 358999999999999764221 1111111100 00 11268999999999999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++++++.+.+.
T Consensus 169 ~l~~~l~~~~~ 179 (183)
T 1moz_A 169 EGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 198
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=2.2e-21 Score=200.88 Aligned_cols=167 Identities=25% Similarity=0.335 Sum_probs=133.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
...+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4568999999999999999999999888766555443322 233444556778899999999998888999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----------ccchhhhhhhHHHHhhcccceEEEeC
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|||++++.+++.+...|...+....+++|+++|+||+|+.... .. ...+....+++.++. .++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~-~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGA-VKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCC-CCHHHHHHHHHHTTC-SEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhcccccccc-ccHHHHHHHHHHcCC-cEEEEec
Confidence 9999999999998767999998877789999999999986531 11 123344566666652 3699999
Q ss_pred cccCCChhHHHHHHHHHHhCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~ 178 (643)
|++|.||+++|+.+.+.++.+
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999887654
No 199
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=1.4e-20 Score=191.83 Aligned_cols=176 Identities=19% Similarity=0.216 Sum_probs=131.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchhhh------h-h-h
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------K-I-L 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~-~-~ 489 (643)
....-.|+|+|+||||||||+|+|++.++..++. + |+.. ........+ ....+.+|||+|..... . + .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3445689999999999999999999999887665 3 3333 222333332 26778899999974332 1 1 1
Q ss_pred ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC-CccccHHHHHHHHHHhC-CCCc
Q 006490 490 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK-PYTMAVQDSARVTQELG-IEPP 567 (643)
Q Consensus 490 ~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~-~~~~~~~~~~~~~~~~~-~~~~ 567 (643)
.+..++..+|++++|+|++++.+++....|+..+... +.|+++|+||+|+. ......+..+.+.+.++ +.++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 1567889999999999999988878777667776653 79999999999998 54555677788888884 5569
Q ss_pred EEeeeccC-CHHHHHHHHHHHHhC-CCCCCCCcccccc
Q 006490 568 IPVSMKSK-DLNNVFSRIIWAAEH-PHLNIPETETGRN 603 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~~l~~~~~~-~~~~~~~~~~~~~ 603 (643)
+++||++| |++++++.+.+.+.. +..+.++..+...
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~ 196 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLP 196 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCC
Confidence 99999999 999999999998854 3334444444433
No 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=4.7e-22 Score=187.47 Aligned_cols=164 Identities=13% Similarity=0.213 Sum_probs=114.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eCCcc---cCCceeEEEEeCCCCCcchhhhHHhhccCC
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHAPTR--LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD 84 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 84 (643)
.+||+|+|++|||||||+++|++. .+...+.++.+... ....+ ....+.+.+|||+|++++....+.+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 34444333333222 11111 235678999999999988888889999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch--hhhhhhHHHHhhcc--cceEEEeCcc
Q 006490 85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFRE--IETCVECSAT 159 (643)
Q Consensus 85 ~il~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~Sa~ 159 (643)
++++|||++++ .+++.+. .|+..+....++.|+++|+||+|+...... . ..+..+.+++.++. ...++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 5788776 599888776668999999999998754221 1 01222334433431 1138999999
Q ss_pred cCC-ChhHHHHHHHHHHhC
Q 006490 160 TMI-QVPDVFYYAQKAVLH 177 (643)
Q Consensus 160 ~~~-gi~~l~~~i~~~~~~ 177 (643)
+|. |++++++.+.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 996 999999999887654
No 201
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=2.1e-21 Score=183.71 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=121.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|++|||||||+|+|+++.+.. +.||.+.. ...+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPY--WRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCC--CSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhhcCCE
Confidence 356899999999999999999999887653 44665532 3334443 467889999999887776 6678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH----HHhCCCCcEEeeeccC-
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKSK- 575 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~g- 575 (643)
+++|+|++++.+++....|+..+....... +.|+++|+||+|+.......+..+.+. ...++ ++++|||++|
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELR--KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTGD 169 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTT--TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcC--CCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCcc
Confidence 999999999999999988888876643322 799999999999976432211111111 11223 4899999999
Q ss_pred CHHHHHHHHHHHHhC
Q 006490 576 DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 ~i~~l~~~l~~~~~~ 590 (643)
|+++++++|.+.+..
T Consensus 170 gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 170 GLVEGMDWLVERLRE 184 (189)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998753
No 202
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.1e-21 Score=180.52 Aligned_cols=156 Identities=20% Similarity=0.206 Sum_probs=117.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
+..+||+++|++|||||||+|+|+++++ ..+.||.+.. ...+... ...+.+||++|++.+..+ +..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPY--WRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence 4579999999999999999999998877 3444565533 3334444 367889999999887776 6788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~ 573 (643)
+++|+|++++.+++....|+..+....... +.|+++|+||+|+..... .+++.+..+.. ++++|||+
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALS----ASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCC----HHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCCC----HHHHHHHhCcccccCCceEEEEccCC
Confidence 999999999999999999888876543222 799999999999976322 12233333211 48999999
Q ss_pred cC-CHHHHHHHHHHHHh
Q 006490 574 SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~ 589 (643)
+| |+++++++|.+.+.
T Consensus 163 ~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999999998764
No 203
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=198.83 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=118.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+|+|++|||||||+++|++..+....|+ .+. ....+...++.+.||||||++.+...+..+++.+|++|+
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT-~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEE-TTE--EEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccc-cce--EEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34568999999999999999999999887554442 111 222345577899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh--cccceEEEeCcccCCChh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP 165 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~ 165 (643)
|||++++.+++.+...|...+... ..++|++||+||+|+...... .+....+.... ....++++|||++|.||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999986555555433 258999999999999764322 11111111111 011258999999999999
Q ss_pred HHHHHHHHHHhC
Q 006490 166 DVFYYAQKAVLH 177 (643)
Q Consensus 166 ~l~~~i~~~~~~ 177 (643)
++|+.+.+.+..
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 204
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=2.8e-20 Score=177.63 Aligned_cols=162 Identities=19% Similarity=0.345 Sum_probs=134.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
..+||+|+|++|||||||+++|++..+...+.||.+.++....+.+.|....+.+||++|++.+..+ ...+++.+|++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHHhcCCEE
Confidence 4689999999999999999999999988888888777777777777866667889999999887766 67778899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
++|+|+++..+++.+..|+..+...... +.|+++|+||+|+...... .+.+..++...++. ++++||+++ |+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEE 157 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence 9999999999998888888877654322 6899999999999764333 56678888888886 899999999 9999
Q ss_pred HHHHHHHHHh
Q 006490 580 VFSRIIWAAE 589 (643)
Q Consensus 580 l~~~l~~~~~ 589 (643)
+++.|.+.+.
T Consensus 158 l~~~l~~~~~ 167 (199)
T 2f9l_A 158 AFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 205
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=4.3e-23 Score=198.00 Aligned_cols=162 Identities=20% Similarity=0.345 Sum_probs=130.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
....+||+|+|.+|||||||+++|++..+...+.+|+.+.+. ..+...+....+.+||++|++.+..+ +..+++.+|
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 103 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTD 103 (204)
Confidence 346799999999999999999999998887777677765443 33445545566779999999888776 677889999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------------ccHHHHHHHHHHhCCC
Q 006490 500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIE 565 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~ 565 (643)
++++|||++++.+++... .|+..+..... +.|+++|+||+|+.... ...+....+++.+++.
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 999999999999999886 68777766543 68999999999997642 1245566777788874
Q ss_pred CcEEeeeccC-CHHHHHHHHHHHH
Q 006490 566 PPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 566 ~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
++++|||++| |++++|+.|.+.+
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 5999999999 9999999988754
No 206
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=8.8e-21 Score=196.28 Aligned_cols=165 Identities=21% Similarity=0.340 Sum_probs=136.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
.+..++|+++|.+|||||||++++++..+...+.+|+.+.+ ...+...+....+.+||++|++.+..+ ...+++.+|
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 228 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTD 228 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTT--GGGGCTTCS
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHhccCCC
Confidence 34569999999999999999999999988777777777655 344556656667779999999888776 677899999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc-------------cccHHHHHHHHHHhCCC
Q 006490 500 VTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY-------------TMAVQDSARVTQELGIE 565 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~ 565 (643)
++++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+... ....+....+++..++.
T Consensus 229 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 229 VFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 999999999999999887 68888877654 7899999999998653 12256778889999985
Q ss_pred CcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 566 PPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 566 ~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
++++|||++| |++++|+.|.+.+..+
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 5999999999 9999999999987643
No 207
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=1e-20 Score=184.79 Aligned_cols=165 Identities=14% Similarity=0.122 Sum_probs=112.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcc---------hhhhHHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN---------KGKLNEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~ 79 (643)
...+||+|+|++|||||||+|+|++..+... .+++.... ....+...+..+.+|||||+... ...+..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 4568999999999999999999999876422 22211111 11223335688999999998421 1122345
Q ss_pred hccCCEEEEEEECCCcccHHHH-HHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhh--hhhhHHHHhhcccceEEEe
Q 006490 80 LKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVEC 156 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (643)
+..+|++|+|||++++.+++.. ...|+..+....+++|+++|+||+|+...... ... +....+....+...++++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEEEE
Confidence 7889999999999998776421 12466677665568999999999999765443 221 2344454444322369999
Q ss_pred CcccCCChhHHHHHHHHHHh
Q 006490 157 SATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||++|.||+++|+++.+.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 208
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.84 E-value=7.5e-20 Score=201.23 Aligned_cols=163 Identities=19% Similarity=0.209 Sum_probs=116.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------CCcc--cCCceeEEEEeCCCCCcchhhhH
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLN 77 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~ 77 (643)
.....+||+|+|++|||||||+|+|++..+.....++.+.... ...+ ...++.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567799999999999999999999999876654444433321 1222 23478999999999999999999
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
.+++.+|++|+|||+++.+. .. +|...+...++++|+|+|+||+|+...... . .+........++ .++++||
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~-~~~~~~~~~~~~--~~~~~vS 188 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI-E-QKKINERFPAIE--NRFHRIS 188 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC-C-HHHHHHHCGGGT--TCEEECC
T ss_pred HHccCCcEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEECCCccccccc-C-HHHHHHHHHhcC--CceEEEe
Confidence 99999999999999876643 33 599999888778999999999999865544 2 233444444444 2699999
Q ss_pred cccCCChhHHHHHHHHHHhCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~ 178 (643)
|++|.||+++++.+.+.+...
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999988654
No 209
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.84 E-value=5.8e-20 Score=174.17 Aligned_cols=162 Identities=20% Similarity=0.344 Sum_probs=136.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...++|+|+|++|||||||+++|++..+...+.||.+.++....+.+.|......+||++|.+.+..+ ...+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--TSAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--CHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--hHHHhhcCCE
Confidence 45689999999999999999999999988888888887777777778765566778999998877666 6778889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
+++|+|+++..+++.+..|+..+...... +.|+++|+||+|+.+.... ...+..++...++. ++.+||+++ |++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v~ 180 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVE 180 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 99999999999988888888777654322 6899999999999764333 56778888888886 899999999 999
Q ss_pred HHHHHHHHHH
Q 006490 579 NVFSRIIWAA 588 (643)
Q Consensus 579 ~l~~~l~~~~ 588 (643)
++|+.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 210
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.2e-20 Score=179.23 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=106.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC----------CcchhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~ 78 (643)
..+.++|+|+|++|||||||+|+|++..+.....++.+.+.....+.. +..+.+|||||. +.+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 345789999999999999999999998754443333332221111111 236999999994 344455667
Q ss_pred hhccC---CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490 79 ELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (643)
Q Consensus 79 ~~~~a---d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (643)
+++.+ |++++|+|++++.+..... +..++... ++|+++|+||+|+...... ....+.+.+.+.. ..++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCCce
Confidence 77776 9999999999988877643 55566554 8999999999999764332 2222333333321 2479
Q ss_pred EEeCcccCCChhHHHHHHHHHH
Q 006490 154 VECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
+++||++|.|++++++++.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 211
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1.7e-20 Score=204.95 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=122.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
.++.+||+|+|++|||||||+|+|++..++...++ .+.. ...+...++.+.||||||++.+...+..+++.+|++|+
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T-~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFN--VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEE--EEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCc-ccee--EEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34579999999999999999999999987665553 2222 22355677899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc------ccceEEEeCccc
Q 006490 89 TYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------EIETCVECSATT 160 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~ 160 (643)
|||++++.+++.+.. |+..+ +.. ..++|+|||+||+|+...... . .+...++ ...++++|||++
T Consensus 396 V~D~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 396 VVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDAMKP---H----EIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTSGGGTTCEEEEEEECCSSSSCCCH---H----HHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEECcchhHHHHHHH-HHHHHhhhhhcCCCcEEEEEECCCCCcCCCH---H----HHHHHhchhhhhcCCeEEEEEECCC
Confidence 999999999999986 55444 332 258999999999999764221 1 1122221 112589999999
Q ss_pred CCChhHHHHHHHHHHhC
Q 006490 161 MIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~~ 177 (643)
|.||+++|+++.+.+..
T Consensus 468 g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TBTHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987643
No 212
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=4.2e-20 Score=178.45 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=111.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC-cEEEEEEecCCchhhhh-hhccHHhhccC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASC 498 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~a 498 (643)
+..+||+|+|.+|||||||+++|++..+...+.+++ ..+.. +..++. ...+.+||++|++.+.. + ...+++.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~ 79 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQL--LDRFKSSA 79 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHH--HHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHH--HHHHHhhC
Confidence 346899999999999999999999998877665433 33332 555543 57788999999998876 5 56778999
Q ss_pred CEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--------------
Q 006490 499 DVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-------------- 563 (643)
Q Consensus 499 d~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-------------- 563 (643)
|++++|||+++.. ++.....++..+.........+.|+++|+||+|+.......+..+.+.+.++
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999999853 4555555444433221101116899999999999865433222222222211
Q ss_pred -----------------------CCCcEEeeeccC-------CHHHHHHHHHHH
Q 006490 564 -----------------------IEPPIPVSMKSK-------DLNNVFSRIIWA 587 (643)
Q Consensus 564 -----------------------~~~~~~vSa~~g-------~i~~l~~~l~~~ 587 (643)
..++++|||++| |++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 124899999998 899999999875
No 213
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=2.3e-20 Score=177.77 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=115.2
Q ss_pred ccCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccce--EEEEEEcC-CCcEEEEEEecCCchhhhhhhcc---H
Q 006490 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY--AVNVVDQP-GGNKKTLILQEIPEEGVKKILSN---K 492 (643)
Q Consensus 419 ~~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~--~~~~v~~~-g~~~~~~i~d~~g~~~~~~~~~~---~ 492 (643)
.....+||+++|.+|||||||++++.+..... +|.+..+ ......+. +....+.+||++|++.+... . .
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~ 90 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFDYE 90 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCCHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhhcc
Confidence 34567899999999999999999988854332 2222111 11222222 45678889999999887665 3 6
Q ss_pred HhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-------cc-HHHHHHHHH--
Q 006490 493 EALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------MA-VQDSARVTQ-- 560 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-------~~-~~~~~~~~~-- 560 (643)
.+++++|++|+|||++++ .+++.+..|+..+..... +.|+++|+||+|+.... .. .+..+++++
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 889999999999999997 666677777777654433 79999999999987632 11 344556666
Q ss_pred --HhCCCCcEEeeeccCCHHHHHHHHHHHH
Q 006490 561 --ELGIEPPIPVSMKSKDLNNVFSRIIWAA 588 (643)
Q Consensus 561 --~~~~~~~~~vSa~~g~i~~l~~~l~~~~ 588 (643)
..++. +++|||++.|++++|+.+++.+
T Consensus 167 ~~~~~~~-~~e~Sa~~~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLS-FYLTSIYDHSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEE-EEEECTTSTHHHHHHHHHHHHT
T ss_pred hhcCCcc-eEEEEechhhHHHHHHHHHHHh
Confidence 45555 9999999978999999998764
No 214
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.83 E-value=2.3e-20 Score=199.96 Aligned_cols=203 Identities=16% Similarity=0.146 Sum_probs=123.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhh--------HHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKL--------NEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 79 (643)
+..++|+|+|+||||||||+|+|++.. ++.+.++++... ....+..+++.+.+|||||+.++.... ..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~-~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY-IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE-EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 456899999999999999999999986 344455532221 333455567899999999997755433 246
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++|+|+|++++.+++.+. .+...+.... ++|+++|+||+|+...... . .+.+.+. + ..++++|||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-~----~~~l~~~-~-~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELT-EIRELKAAHP-AAKFLTVANKLDRAANADA-L----IRAIADG-T-GTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHCT-TSEEEEEEECTTSCTTTHH-H----HHHHHHH-H-TSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhH-HHHHHHHhcC-CCCEEEEEECcCCCCccch-h----HHHHHhc-C-CCceEEEEEC
Confidence 89999999999999998875432 2333444333 7999999999999765332 1 1223332 1 2469999999
Q ss_pred cCCChhHHHHHHHHHHh-CCC----CCCCccccc-cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL-HPT----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQ 222 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~-~~~----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~ 222 (643)
+|.||+++++++.+.+. ... .+.....++ .....+..+|++.....+......+..++++...
T Consensus 381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~ 449 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAAL 449 (476)
T ss_dssp TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999886 332 122222222 2456667777776665555555566666665543
No 215
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=192.55 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=114.9
Q ss_pred cCceEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCc-ccceEEE--------EEE------cCCCcE
Q 006490 420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVN--------VVD------QPGGNK 472 (643)
Q Consensus 420 ~~~~~ki~ivG~~---------nvGKSSLln~l~~---~~~~~~~~~t~-~~~~~~~--------~v~------~~g~~~ 472 (643)
....+||+|+|.+ |||||||+|+|++ ..+...+.+|+ +.++... .++ .++...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4456999999999 9999999999999 55555565654 3222111 111 233455
Q ss_pred EEEEEe-----------------------cCCchhhhhhhccHHhhc---------------------cCCEEEEEEeCC
Q 006490 473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDSS 508 (643)
Q Consensus 473 ~~~i~d-----------------------~~g~~~~~~~~~~~~~~~---------------------~ad~illv~D~s 508 (643)
.+.+|| ++|++.+..+ +..+++ +||++|+|||++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA--EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECT--TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhh--hhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 677898 4455444443 333343 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh-CCCCcEEeeeccC-CHHHHHHHH
Q 006490 509 DE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-GIEPPIPVSMKSK-DLNNVFSRI 584 (643)
Q Consensus 509 ~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~g-~i~~l~~~l 584 (643)
++ .+|+.+..|+..+....... ++|+++|+||+|+...+.. +..+++++.. ++. +++|||++| |++++|++|
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~-~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKT--KKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQ-VVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHT--TCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCC-EEECBTTTTBSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccC--CCCEEEEEEcccccccHHH-HHHHHHHHhcCCCe-EEEEECCCCCCHHHHHHHH
Confidence 98 99999999998887652111 7999999999999764443 4566677664 554 999999999 999999999
Q ss_pred HHHHh
Q 006490 585 IWAAE 589 (643)
Q Consensus 585 ~~~~~ 589 (643)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.83 E-value=1.5e-20 Score=175.05 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=108.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh--------hHHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 79 (643)
++.+||+|+|++|||||||+|+|++..+ +...+++.... ....+..++..+.+|||||+..+... ...+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3568999999999999999999998764 33344432221 22233345667999999998754221 1246
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA 158 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (643)
++.+|++++|||++++.+++.. .|+..+.... .++|+++|+||+|+...... . ....+ .++++|||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~-------~~~~~--~~~~~~SA 147 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--M-------SEVNG--HALIRLSA 147 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--E-------EEETT--EEEEECCT
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--h-------hhccC--CceEEEeC
Confidence 8999999999999998887643 4777776543 47999999999998543111 0 01111 36899999
Q ss_pred ccCCChhHHHHHHHHHH
Q 006490 159 TTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 159 ~~~~gi~~l~~~i~~~~ 175 (643)
++|.||+++|+++.+.+
T Consensus 148 ~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TTCTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 217
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.83 E-value=1.8e-20 Score=191.13 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=120.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCC-CCCCeeeCCcccCCceeEEEEeCCCCCcc-----hhhhHHhhcc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR 82 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~ 82 (643)
..+||+|+|++|||||||+|+|+++. +....++ +.+.......+ .+++.+.+|||||++.+ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 46899999999999999999999874 3332233 22222222222 24789999999999877 6677889999
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHH---HHHhcCCCCcEEEEEecccCCCCCccc----hhhhhhhHHHHhhcc-cceEE
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFRE-IETCV 154 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~---~l~~~~~~~pvilv~NK~D~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 154 (643)
+|++|+|||++++.+++.+. .|.. .+....+++|+++|+||+|+....... ...+.+..++..++. ..+++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999999999886 3544 444456789999999999997621110 122445677777762 14799
Q ss_pred EeCcccCCChhHHHHHHHHHHh
Q 006490 155 ECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 155 ~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++||++ .|+.++|..+...+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 899999998887654
No 218
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=3.2e-20 Score=173.49 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=115.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...++|+|+|.+|||||||+|+|++..+...+.++++.+.....+...+ ..+.+||++|++.+..+ ...++..+|+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 81 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTM--RARGAQVTDI 81 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCS--CCSSCCCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHH--HHHHHhhCCE
Confidence 4568999999999999999999999988776666655545444455553 45678999999888776 5677899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--------CCcEEeee
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------EPPIPVSM 572 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vSa 572 (643)
+++|+|++++...+. ...+..+... ++|+++|+||+|+.... .+......+..+. .++++|||
T Consensus 82 ~i~v~d~~~~~~~~~-~~~l~~~~~~------~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 82 VILVVAADDGVMPQT-VEAINHAKAA------NVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEEETTCCCCHHH-HHHHHHHGGG------SCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEEECCCCCcHHH-HHHHHHHHhC------CCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 999999998543222 2223333222 79999999999997632 1222222222221 25899999
Q ss_pred ccC-CHHHHHHHHHHHHhCCC
Q 006490 573 KSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~~~~ 592 (643)
++| |++++|++|.+.+....
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhhhhhc
Confidence 999 99999999999876443
No 219
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=5.4e-20 Score=200.99 Aligned_cols=165 Identities=19% Similarity=0.207 Sum_probs=124.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 500 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~ 500 (643)
...+||+|+|.+|||||||+|+|++.++... .||.+. ....++.. ...+.+|||+|++.+..+ +..+++.+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGF--NVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSE--EEEEEESS--SCEEEEEEECCCGGGSGG--GGGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccce--eEEEEEeC--CEEEEEEECCCcHHHHHH--HHHHhccCCE
Confidence 4569999999999999999999999885543 355443 34445554 467889999999998887 7889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeeec
Q 006490 501 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 573 (643)
Q Consensus 501 illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa~ 573 (643)
+|+|||++++.+|+.+..|+..+....... ++|+|+|+||+|+..... .+++.+.++.. ++++|||+
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCAT 466 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECCSSSSCCC----HHHHHHHTTCTTCCSSCEEEEECBTT
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcC--CCcEEEEEECCCCCcCCC----HHHHHHHhchhhhhcCCeEEEEEECC
Confidence 999999999999999999988886643323 799999999999976322 23344444432 38999999
Q ss_pred cC-CHHHHHHHHHHHHhCCCCCCCCc
Q 006490 574 SK-DLNNVFSRIIWAAEHPHLNIPET 598 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~~~~~~~~~~ 598 (643)
+| |++++|++|.+.+.......++.
T Consensus 467 ~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp TTBTHHHHHHHHHHHCC---------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 99 99999999999987666555443
No 220
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=3.8e-20 Score=184.54 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=114.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc--c
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R 82 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 82 (643)
.++|+|+|+||||||||+|+|++.. ++.++|++.... ....+.. +..+.+|||||+..+. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 5799999999999999999999876 566676543322 2233344 6789999999998764 34455665 6
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCC
Q 006490 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI 162 (643)
Q Consensus 83 ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (643)
+|++++|+|+++..+. . +|...+... ++|+++|+||+|+...... . .....+.+.++ .+++++||++|.
T Consensus 81 ~d~vi~V~D~t~~e~~---~-~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg--~~vi~~SA~~g~ 149 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---L-YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLG--VPVVATSALKQT 149 (272)
T ss_dssp CSEEEEEEEGGGHHHH---H-HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBTTTTB
T ss_pred CCEEEEEecCCchHhH---H-HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcC--CCEEEEEccCCC
Confidence 9999999998876443 2 466667665 8999999999998654332 1 23456667776 379999999999
Q ss_pred ChhHHHHHHHHHHh
Q 006490 163 QVPDVFYYAQKAVL 176 (643)
Q Consensus 163 gi~~l~~~i~~~~~ 176 (643)
||+++|+++.+.+.
T Consensus 150 gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 150 GVDQVVKKAAHTTT 163 (272)
T ss_dssp SHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988653
No 221
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=2.8e-20 Score=184.51 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=117.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhh------hHHhh--
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL-- 80 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~-- 80 (643)
++.++|+|+|++|||||||+|+|++..+ +.++|+++ .......+...+..+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t-v~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT-VEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce-EEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4568999999999999999999999874 33455532 22233445556789999999999876542 24454
Q ss_pred ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 81 ~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
..+|++++|+|+++..+.. +|...+... ++|+++|+||+|+...... . .....+.+.++ .+++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg--~~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLG--IPVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHC--SCEEECCTTT
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcC--CCEEEEEeeC
Confidence 5899999999999865433 366666665 8999999999998654433 2 22466777777 4799999999
Q ss_pred CCChhHHHHHHHHHHh
Q 006490 161 MIQVPDVFYYAQKAVL 176 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~ 176 (643)
|.|++++++.+.+.+.
T Consensus 151 g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhh
Confidence 9999999999998765
No 222
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=4.3e-20 Score=169.52 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc-------hhhhHHhhccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-------KGKLNEELKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 83 (643)
.||+++|++|||||||+|+|++..+. ...+++.... ....+...+..+.+|||||+..+ ...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999998743 2233322111 22233345668999999998862 34455788999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ 163 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 163 (643)
|++++|+|+++..+... ..+...++.. ++|+++|+||+|+.... +....+. +++ ..+++++||++|.|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~-~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLG-FGDPIPTSSEHARG 148 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGS-SCSCEECBTTTTBS
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCC-CCCeEEEecccCCC
Confidence 99999999988755443 2355555554 79999999999987531 2233343 444 23689999999999
Q ss_pred hhHHHHHHHHHH
Q 006490 164 VPDVFYYAQKAV 175 (643)
Q Consensus 164 i~~l~~~i~~~~ 175 (643)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999988764
No 223
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=190.50 Aligned_cols=157 Identities=21% Similarity=0.240 Sum_probs=118.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 499 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad 499 (643)
.+..+||+|+|.+|||||||+++|++..+...+ ||.... ...++. ....+.+|||+|++.+..+ +..+++.+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~--~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEE--TTEEEEEEECC-----CCS--HHHHHTTEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEec--CcEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 346789999999999999999999998865433 444433 333433 4567889999999988877 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCC-------CcEEeee
Q 006490 500 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 572 (643)
Q Consensus 500 ~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa 572 (643)
++|+|||++++.+|+.+..++..+....... ++|+++|+||+|+..... .+++...++.. ++++|||
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEEC
Confidence 9999999999999999988887776544322 789999999999986432 23344444432 3899999
Q ss_pred ccC-CHHHHHHHHHHHHh
Q 006490 573 KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~ 589 (643)
++| |++++|+.|.+.+.
T Consensus 309 k~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTTBTHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999 99999999999875
No 224
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=8.5e-20 Score=184.92 Aligned_cols=158 Identities=22% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceeEEEEeCCCCCc--------chhhhHHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 79 (643)
.+..+|+|+|+||||||||+|+|++..+.. ..++++.. .....+..++..+.+|||||+.. +......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 345679999999999999999999988643 23332221 12223445678999999999876 33455578
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++|+|+|++++.+... ..+.+.++...+++|+++|+||+|+..... . +....+.+....+++++||+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCTT
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeCC
Confidence 999999999999988765543 234566766555799999999999875321 0 12222332223468999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (643)
+|.|++++++.+.+.+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987654
No 225
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=5.6e-20 Score=174.51 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=111.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC----------Ccchhhh
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS----------LENKGKL 76 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~ 76 (643)
......+||+|+|++|||||||+|+|++..+....+ +.+.+. .......+..+.+|||||. +.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-TPGKTR-SINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-SCCCCC-CEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-CCCCcc-CeEEEEECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 344567899999999999999999999987433222 222222 1112222446889999994 3344455
Q ss_pred HHhhccC---CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceE
Q 006490 77 NEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC 153 (643)
Q Consensus 77 ~~~~~~a---d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (643)
..+++.+ |++++|+|+++..+.... .+..++... ++|+++|+||+|+..........+....+...++. .++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-YTI 170 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-SCE
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-Cce
Confidence 5666665 999999998877555443 255566655 79999999999997543221122333334433332 379
Q ss_pred EEeCcccCCChhHHHHHHHHHHh
Q 006490 154 VECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++|||++|.||+++|+++.+.+.
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 226
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=3e-20 Score=175.46 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=116.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch------hhhHHhhc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK 81 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~ 81 (643)
.++.++|+|+|++|||||||+|+|++..+. ...+++. .......+..++..+.+|||||++.+. .....++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT-VEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCee-ccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 346789999999999999999999987642 2244322 222333444557899999999998764 33445554
Q ss_pred --cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 82 --~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
.+|++++|+|.++ ++... .|...+... +.|+++|+||+|+...... . ...+.+.+.++ .+++++||+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~--~~~~~~Sa~ 151 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILG--VKVVPLSAA 151 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHT--SCEEECBGG
T ss_pred ccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhC--CCeEEEEec
Confidence 4999999999775 44444 477777664 8999999999998654332 1 33466667666 379999999
Q ss_pred cCCChhHHHHHHHHHHhCCC
Q 006490 160 TMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~ 179 (643)
+|.|++++|+++.+.+....
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999876544
No 227
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=2.6e-20 Score=181.17 Aligned_cols=166 Identities=12% Similarity=0.031 Sum_probs=112.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCeeeCCccc-CCceeEEEEeCCCCCcc----------hh
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLEN----------KG 74 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~----------~~ 74 (643)
....++|+|+|++|||||||+|+|++... ....+++..... ...+. ..+..+.||||||+... ..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34568999999999999999999999872 333444322222 12222 45688999999996432 33
Q ss_pred hhHHhhcc---CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh----
Q 006490 75 KLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---- 147 (643)
Q Consensus 75 ~~~~~~~~---ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~---- 147 (643)
....+++. +|++|+|+|+++..+... ..|+..++.. ++|+++|+||+|+..........+.+......+
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 44455555 788999999987655333 3477777765 899999999999876432101111122222222
Q ss_pred -cccceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 148 -REIETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 148 -~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
....+++++||++|.||+++++++.+.+....
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 22347999999999999999999998876543
No 228
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=1.2e-19 Score=184.86 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=121.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCCcccceEEEEEEcCCCcEEEEEEecCCchhh-----hhhhccHH
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE 493 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~---~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-----~~~~~~~~ 493 (643)
..+||+++|++|||||||+|+|+++....+. .+|.+..+ ..+... +...+.+||++|++.+ ..+ +..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~--~~~ 76 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFL-GNMTLNLWDCGGQDVFMENYFTKQ--KDH 76 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEET-TTEEEEEEEECCSHHHHHHHHTTT--HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeC-CceEEEEEECCCcHHHhhhhhhhH--HHH
Confidence 3589999999999999999999988544332 23444433 334445 4678889999999877 344 677
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHH---HHhcCCCCCCCcEEEEEeCCCCCC--cc-----ccHHHHHHHHHHhC
Q 006490 494 ALASCDVTIFVYDSSDEYSWKRTKELLVEV---ARLGEDSGYGVPCLLIASKDDLKP--YT-----MAVQDSARVTQELG 563 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~s~~~~~~~~~~i---~~~~~~~~~~~pvilv~NK~Dl~~--~~-----~~~~~~~~~~~~~~ 563 (643)
+++++|++++|||++++.+|+.+..|...+ ....+ ++|+++|+||+|+.. .+ ...+.+.++++.+|
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~----~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC----CCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 889999999999999999999887765444 43333 799999999999987 33 22477888899998
Q ss_pred C--CCcEEeeeccCCHHHHHHHHHHHH
Q 006490 564 I--EPPIPVSMKSKDLNNVFSRIIWAA 588 (643)
Q Consensus 564 ~--~~~~~vSa~~g~i~~l~~~l~~~~ 588 (643)
+ .++++|||+++|+.++|..+++.+
T Consensus 153 ~~~~~~~~tSa~~~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 153 FPNLIGFPTSIWDESLYKAWSQIVCSL 179 (307)
T ss_dssp CCSCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEEeeecCChHHHHHHHHHHHH
Confidence 5 469999999988888888887654
No 229
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=5.2e-20 Score=173.82 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=121.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL 495 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~ 495 (643)
..++|+++|++|||||||+|+|++..+...+.|+++.+.....+... ...+.+|||+|++.+. .+ ...++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH--HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH--HHHHH
Confidence 45899999999999999999999977654444655555555556554 3677889999987653 22 33444
Q ss_pred c--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490 496 A--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (643)
Q Consensus 496 ~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 573 (643)
. .+|++++|+|+++ ++....|+..+... +.|+++|+||+|+..........+.+++.++++ ++++||+
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 151 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSAA 151 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBGG
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEEec
Confidence 3 5999999999976 55667777777653 799999999999876544445678888888986 9999999
Q ss_pred cC-CHHHHHHHHHHHHhCCC
Q 006490 574 SK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~~~~ 592 (643)
+| |++++|+++.+.+....
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99 99999999999987544
No 230
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=7.8e-20 Score=167.75 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------hhhhccHHhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL 495 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~~~~~~~~~~ 495 (643)
+||+++|++|||||||+|+|.+..+..... ++++.+.....+...+ ..+.+||++|.+.. ... +..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEK--VDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHH--HHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHH--HHHHH
Confidence 589999999999999999999987653332 3443344455555553 46788999998762 222 45678
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
+.+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.... +...+++ .+++.+++++||++|
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~------~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQAD-YEVAEYLRRK------GKPVILVATKVDDPKHE---LYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHH-HHHHHHHHHH------TCCEEEEEECCCSGGGG---GGCGGGG-GGSSCSCEECBTTTT
T ss_pred HhCCEEEEEEECCCcccHhH-HHHHHHHHhc------CCCEEEEEECcccccch---HhHHHHH-hCCCCCeEEEecccC
Confidence 99999999999998755332 2222333332 79999999999997642 2334445 577756999999999
Q ss_pred -CHHHHHHHHHHHH
Q 006490 576 -DLNNVFSRIIWAA 588 (643)
Q Consensus 576 -~i~~l~~~l~~~~ 588 (643)
|++++|+++.+.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 9999999998764
No 231
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=6.1e-20 Score=196.75 Aligned_cols=189 Identities=15% Similarity=0.067 Sum_probs=114.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh------hccH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNK 492 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~------~~~~ 492 (643)
.+..++|+|+|.||||||||+|+|++.++..+.+ ++++.+.....+...| ..+.+|||+|...+... .++.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~ 307 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSR 307 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHH
Confidence 4467899999999999999999999987665544 4444444445555653 56888999998654432 2245
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
.+++.||++++|+|++++.+++....+...+... . ++|+++|+||+|+...... ..+.+.+. ++.++++|||
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~----~~piIvV~NK~Dl~~~~~~--~~~~l~~~-~~~~~i~vSA 379 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P----AAKFLTVANKLDRAANADA--LIRAIADG-TGTEVIGISA 379 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T----TSEEEEEEECTTSCTTTHH--HHHHHHHH-HTSCEEECBT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C----CCCEEEEEECcCCCCccch--hHHHHHhc-CCCceEEEEE
Confidence 6789999999999999988775433332222222 2 6899999999999875433 22344444 3356999999
Q ss_pred ccC-CHHHHHHHHHHHHh-CCCCCCCCcccccchhhhhhhhchhhHHHHH
Q 006490 573 KSK-DLNNVFSRIIWAAE-HPHLNIPETETGRNRKRYRHLVNSSLVFVSV 620 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 620 (643)
++| |+++++++|.+.+. .+... ++ .......|+.++++++..++..
T Consensus 380 ktg~GI~eL~~~i~~~~~~~~~~~-~~-~~~~~~~R~~~~l~~a~~~L~~ 427 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVKNLDKLH-EA-SVLVTSLRHYEALRNASDALQN 427 (476)
T ss_dssp TTTBSHHHHHHHHTHHHHSSCCCC-TT-SCCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCCC-Cc-ccccccHHHHHHHHHHHHHHHH
Confidence 999 99999999999887 54422 22 2233556777777777765543
No 232
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=1.5e-19 Score=171.76 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=107.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC----------chhhhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g----------~~~~~~~~ 489 (643)
....++|+|+|.+|||||||+|+|++..+...+.++.+..........+ . .+.+||++| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~- 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRM- 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHH-
Confidence 3457899999999999999999999987554444433332333333333 2 467899999 6666655
Q ss_pred ccHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC--
Q 006490 490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-- 564 (643)
Q Consensus 490 ~~~~~~~~a---d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-- 564 (643)
...+++.+ |++++|+|++++.++.... +...+... +.|+++|+||+|+..........+++.+.+..
T Consensus 96 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 96 -IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp -HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred -HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence 45566666 9999999999987766532 23333332 79999999999998765554444555554432
Q ss_pred -CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 565 -EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 565 -~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.+++++||++| |+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 35899999999 99999999998764
No 233
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=2.9e-20 Score=184.05 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=112.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----------hhHHhh-
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL- 80 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~- 80 (643)
.+|+|+|++|||||||+|+|++..+ +.+.|+++ .......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~T-v~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVT-VEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSS-SEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCce-EEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 3799999999999999999999873 33455533 2233344555667899999999987653 334566
Q ss_pred -ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 81 -~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
+.+|++|+|+|+++..+.. ++..++... ++|+++|+||+|+...... ......+.+.++ .+++++||+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~----~l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~vi~~SA~ 149 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHL----YLTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLG--CSVIPIQAH 149 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHH----HHHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHC--SCEEECBGG
T ss_pred hCCCCEEEEEeeCCCchhHH----HHHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcC--CCEEEEECC
Confidence 8999999999998854433 355556555 8999999999998654332 122455667776 479999999
Q ss_pred cCCChhHHHHHHHHH
Q 006490 160 TMIQVPDVFYYAQKA 174 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~ 174 (643)
+|.|++++++.+.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999886
No 234
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=184.39 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=111.3
Q ss_pred CCCCccEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCC-CCee--eCCc--------------ccCCc
Q 006490 8 SSRTGVRVVVVGDR---------GTGKSSLIAAAAT---ESVPEKVPPVH-APTR--LPPD--------------FYPDR 58 (643)
Q Consensus 8 ~~~~~~kI~lvG~~---------~vGKSsL~n~l~~---~~~~~~~~~~~-~~~~--~~~~--------------~~~~~ 58 (643)
.....+||+|+|++ |||||||+|+|++ ..+...+.++. +... .... ++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 9999999999999 44544433321 1111 1111 23466
Q ss_pred eeEEEEe-----------------------CCCCCcchhhhHHhhc---------------------cCCEEEEEEECCC
Q 006490 59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ 94 (643)
Q Consensus 59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~il~v~d~~~ 94 (643)
+.+.||| ++|++.+...+..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 4555555555555555 7999999999999
Q ss_pred c--ccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 95 ~--~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
+ .+++.+. .|+..+... ..++|++||+||+|+...+.+ +....++..... .++++|||++|.||+++|++
T Consensus 175 ~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 175 GMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred CchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence 8 9999988 588887653 358999999999998643221 334455544322 36999999999999999999
Q ss_pred HHHHH
Q 006490 171 AQKAV 175 (643)
Q Consensus 171 i~~~~ 175 (643)
+.+.+
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 235
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=2.5e-20 Score=173.55 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=111.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhh----h--hhccHHh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----K--ILSNKEA 494 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~----~--~~~~~~~ 494 (643)
..+||+|+|++|||||||+|+|++..+..+.. ++++.++....+...| ..+.+|||+|.+... . +.+...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45799999999999999999999987654333 4444445555566653 347789999975421 1 2223457
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
++.+|++++|+|++++.+++ ...|+..+.+.... ++|+++|+||+|+...... +++..+. ++++|||++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~------~~~~~~~-~~~~~SA~~ 149 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA---KLPITVVRNKADITGETLG------MSEVNGH-ALIRLSART 149 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT---TCCEEEEEECHHHHCCCCE------EEEETTE-EEEECCTTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc---CCCEEEEEECccCCcchhh------hhhccCC-ceEEEeCCC
Confidence 89999999999999988866 45677776654322 6999999999998543211 0111233 489999999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++|+.|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9 99999999998764
No 236
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=1.8e-19 Score=175.89 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=112.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCc------hh----hhhhhc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS 490 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~------~~----~~~~~~ 490 (643)
...++|+|+|.+|||||||+|+|++..+.....+.++.......+... ...+.+|||+|. +. +..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~--- 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT--- 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH---
Confidence 456899999999999999999999988763333333333444444433 367788999998 32 212
Q ss_pred cHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHHHHHHHhC-
Q 006490 491 NKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSARVTQELG- 563 (643)
Q Consensus 491 ~~~~~~~ad~illv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~~~~~~~~- 563 (643)
....+..+|++++|+|++++.+|. ....|+..+..... +.|+++|+||+|+...+.. .+..+.++...+
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS----NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc----CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 233468899999999999987764 23456666654322 7899999999999865443 224566666666
Q ss_pred -CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 564 -IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 564 -~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+. +++|||++| |++++|++|.+.+.
T Consensus 178 ~~~-~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 178 PIK-FSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CEE-EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred Cce-EEEEecccCCCHHHHHHHHHHHHH
Confidence 44 999999999 99999999999875
No 237
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=1.6e-19 Score=182.90 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=109.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCchh--------hhhhhccH
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSNK 492 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~--------~~~~~~~~ 492 (643)
..+|+|+|+||||||||+|+|++.++..++. | ||+... ...+.. ....+.+|||+|... +... ..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i-~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~--~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL-RGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQE--VY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE-EEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHH--HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE-EEEEEe--CCcEEEEecCccccchhhHHHHHHHHH--HH
Confidence 3579999999999999999999999876654 4 444322 222322 456788999999754 2222 56
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH-hCCCCcEEe
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELL-VEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-LGIEPPIPV 570 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~-~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v 570 (643)
.+++.+|++++|+|++++.+.. ..|+ ..+..... +.|+++|+||+|+...... ..+..+. .++.+++++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~----~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~i 152 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLVG----KVPILLVGNKLDAAKYPEE---AMKAYHELLPEAEPRML 152 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT----TSCEEEEEECGGGCSSHHH---HHHHHHHTSTTSEEEEC
T ss_pred HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC----CCCEEEEEECcccCCchHH---HHHHHHHhcCcCcEEEE
Confidence 7889999999999999875543 3343 44444321 6899999999999864330 2233333 344468999
Q ss_pred eeccC-CHHHHHHHHHHHHh
Q 006490 571 SMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~ 589 (643)
||++| |++++++.|.+.+.
T Consensus 153 SA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMP 172 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHhcc
Confidence 99999 99999999998764
No 238
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=1e-19 Score=180.48 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=118.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhh----ccHHhh--
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL----SNKEAL-- 495 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~----~~~~~~-- 495 (643)
+.++|+++|.+|||||||+|+|++..+.....|+++.......+... ...+.+||++|...+.... -...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 46899999999999999999999987654444544444444444443 4678899999987654310 023444
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK 575 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g 575 (643)
..+|++++|+|+++..+ ...|...+... ++|+++|+||+|+...+......+.+++.++++ ++++||++|
T Consensus 82 ~~~d~ii~V~D~t~~~~---~~~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~SA~~g 151 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQ---SLYLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFTSSVTG 151 (258)
T ss_dssp SCCSEEEEEEETTSCHH---HHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEECCTTTC
T ss_pred cCCCEEEEEeCCCchhh---HHHHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEEEeeCC
Confidence 58999999999998654 33466666554 799999999999976544444578899999986 999999999
Q ss_pred -CHHHHHHHHHHHHhC
Q 006490 576 -DLNNVFSRIIWAAEH 590 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~ 590 (643)
|++++|+.+.+.+..
T Consensus 152 ~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQK 167 (258)
T ss_dssp TTHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhhc
Confidence 999999999998763
No 239
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=3.5e-20 Score=183.44 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=115.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----------hhccHH
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE 493 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----------~~~~~~ 493 (643)
.+|+++|.+|||||||+|+|++........|+++.+.....+...+ ..+.+||++|...+.. + +..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i--~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQI--AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHH--HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHH--HHH
Confidence 3799999999999999999999875444446655555566666553 4778899999865542 3 344
Q ss_pred hh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490 494 AL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 494 ~~--~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
++ ..+|++++|+|+++..++.. +...+... ++|+++|+||+|+...+........+.+.++++ ++++|
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~---l~~~l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S 147 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLY---LTSQLFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ 147 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHH---HHHHHTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB
T ss_pred HHhhCCCCEEEEEeeCCCchhHHH---HHHHHHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE
Confidence 55 89999999999998655443 33333333 799999999999976554545567788899986 99999
Q ss_pred eccC-CHHHHHHHHHHH
Q 006490 572 MKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~ 587 (643)
|++| |++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 9999 999999999987
No 240
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.81 E-value=2.8e-19 Score=170.57 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEE
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT 89 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 89 (643)
.+||+|+|++|||||||+++|++..+.....++.+... ....+++..+.+.+|||+|.+.+......+++.+|++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 58999999999999999999999887655444333322 2233445567889999999988888888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHH
Q 006490 90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168 (643)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 168 (643)
+|+++..+++.+. .|...+... ..+.|+++|+||+|+...... .. +....++...+ ..++++||+++.|+++++
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~-~~a~~l~~~~~--~~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 85 YDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PT-DEARAFAEKNN--LSFIETSALDSTNVEEAF 159 (199)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CH-HHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccccCc-CH-HHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 9999999988876 488777654 347899999999999764443 22 33455666654 368999999999999999
Q ss_pred HHHHHHHh
Q 006490 169 YYAQKAVL 176 (643)
Q Consensus 169 ~~i~~~~~ 176 (643)
+.+.+.+.
T Consensus 160 ~~l~~~~~ 167 (199)
T 2f9l_A 160 KNILTEIY 167 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 241
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=7.2e-20 Score=173.03 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=109.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC-----------chhhhhhhccH
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK 492 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g-----------~~~~~~~~~~~ 492 (643)
+||+|+|.+|||||||+|+|++..+...+.|+++..... +... .+.+||++| ++.+..+ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDE--IV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHH--HH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHH--HH
Confidence 589999999999999999999998776666654433322 2222 466799999 5555554 45
Q ss_pred Hhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490 493 EALAS-CDVTIFVYDSSDEYSWKRT-KELLVE--------VARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562 (643)
Q Consensus 493 ~~~~~-ad~illv~D~s~~~s~~~~-~~~~~~--------i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~ 562 (643)
.+++. ++++++|+|+.+..++..+ ..|... +....... +.|+++|+||+|+.... .+..+++++.+
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 149 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV--QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence 55555 6655555555556666665 445432 21111111 79999999999998754 56778889999
Q ss_pred CCC------CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 563 GIE------PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 563 ~~~------~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+.+ ++++|||++| |++++|++|.+.+.
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 875 2599999999 99999999999875
No 242
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=7.1e-20 Score=173.08 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCC-----------CcchhhhHHhhc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS-----------LENKGKLNEELK 81 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~~~~~ 81 (643)
+||+|+|++|||||||+|+|++..+.....+..+.... .+... .+.+|||||. +.+...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998865442221111111 11111 6899999994 344455556677
Q ss_pred c-CCEEEEEEECCCcccHHHHHHHHHHH---------HHh-cCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc
Q 006490 82 R-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI 150 (643)
Q Consensus 82 ~-ad~il~v~d~~~~~s~~~~~~~~~~~---------l~~-~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
. ++++++|+++.+..++..+...|... +.. ...++|+++|+||+|+.... .+..+.+++.++..
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEVP 152 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTCC
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhhh
Confidence 6 77777777777777777764456542 111 12489999999999997642 34456666666531
Q ss_pred -----ceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490 151 -----ETCVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 151 -----~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
.++++|||++|.|++++|+++.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 147999999999999999999987653
No 243
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=1.1e-19 Score=181.21 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=113.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh------hhhccHHhhc
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA 496 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~------~~~~~~~~~~ 496 (643)
.++|+++|+||||||||+|+|++........|+++....... +.+ ...+.+||++|++.+. .+ +..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v--~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKV--ARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHH--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHH--HHHHHh
Confidence 579999999999999999999997643333343333222222 332 3467789999987664 23 344554
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 497 --SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 497 --~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
.+|++++|+|+++..+ ...|...+.+. ++|+++|+||+|+............+++.++++ +++|||++
T Consensus 78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~SA~~ 147 (272)
T 3b1v_A 78 SQRADSILNVVDATNLER---NLYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATSALK 147 (272)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBTTT
T ss_pred cCCCCEEEEEecCCchHh---HHHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEEccC
Confidence 6999999999998644 34566666553 899999999999876444445677888999986 99999999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++|+.+.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9 99999999998764
No 244
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.80 E-value=5.3e-19 Score=167.54 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=124.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
..++|+|+|++|||||||+++|++..+.....++.+... ....+++..+.+.+|||+|++.+...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 458999999999999999999999887655444333322 223344445677889999999888888899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
|+|+++..+++.+. .|...++.. ..+.|+++|+||+|+...... . .+....++.+.+ ..++++||+++.|++++
T Consensus 108 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~-~~~a~~l~~~~~--~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 108 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRAV-P-TDEARAFAEKNG--LSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-C-HHHHHHHHHHTT--CEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccccc-C-HHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 99999998888876 487777653 347899999999998754333 2 233456666554 26899999999999999
Q ss_pred HHHHHHHH
Q 006490 168 FYYAQKAV 175 (643)
Q Consensus 168 ~~~i~~~~ 175 (643)
++.+.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 245
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=1.1e-19 Score=182.17 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=113.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh----------hhHHh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE 79 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~ 79 (643)
+.++|+|+|++|||||||+|+|++..+ +.+.++++ .......+...+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS-SEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee-EEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 468999999999999999999999874 23355532 2233344555667899999999887552 12222
Q ss_pred --hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 80 --~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
.+.+|++|+|+|+++..... +|...+.+. ++|+++|+||+|+...... ......+.+.++ .+++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg--~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLG--CPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHT--SCEEECC
T ss_pred HhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcC--CCEEEEE
Confidence 37999999999988754332 356666666 8999999999998654332 123456667776 4799999
Q ss_pred cccCCChhHHHHHHHHHHhC
Q 006490 158 ATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~ 177 (643)
|++|.|++++++.+.+.+..
T Consensus 150 A~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhc
Confidence 99999999999998876543
No 246
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=8.5e-20 Score=182.89 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=117.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh----------hhccH
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNK 492 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~----------~~~~~ 492 (643)
.++|+++|.+|||||||+|+|++..+.....|+++.+.....+...+ ..+.+||++|...+.. +.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 47999999999999999999999875444446655556666666653 4567799999766542 21111
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
.....+|++++|+|+++..+. ..+...+.+. ++|+++|+||+|+..........+.+++.++++ ++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHH---HHHHHHHHHH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECCC
T ss_pred HhhcCCCEEEEEecCCChHHH---HHHHHHHHhc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEEc
Confidence 223799999999999986543 3444445444 799999999999876554445567888999986 999999
Q ss_pred ccC-CHHHHHHHHHHHHhC
Q 006490 573 KSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~~ 590 (643)
++| |++++++.+.+.+..
T Consensus 151 ~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GGGHHHHHHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 999 999999999887653
No 247
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=7.1e-20 Score=184.08 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh---hhHHhhccCCEEE
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---KLNEELKRADAVV 87 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~il 87 (643)
||+++|+.|||||||++++.++.+... ..++.+.... .+ ...+++.||||+|++++.. ....++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 699999999999999999886643221 1222222111 12 2458899999999999864 4688999999999
Q ss_pred EEEECCCcccHHHHHHHH---HHHHHhcCCCCcEEEEEecccCCCCCc------cchhhhhhhHHHHhh--cccceEEEe
Q 006490 88 LTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF--REIETCVEC 156 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~pvilv~NK~D~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (643)
+|||++++ ..+... .| +..++...+++|+++||||+|+..+.. . ...+..+++++.. +.-.+++++
T Consensus 78 lV~Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~-V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 78 YVIDSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRD-IMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EECCCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHH-HHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHH-hhHHHHHHHHhhcccccCceEEEe
Confidence 99999998 333222 34 444455567899999999999976421 1 1222233444421 011369999
Q ss_pred CcccCCChhHHHHHHHHHHh
Q 006490 157 SATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 157 Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||++ .||.+.|..+.+.+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSS
T ss_pred ccCC-CcHHHHHHHHHHHHH
Confidence 9997 589999998887655
No 248
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=1.1e-18 Score=165.45 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=108.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCC----------chhhhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKIL 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g----------~~~~~~~~ 489 (643)
....+||+|+|.+|||||||+|+|++....... ++.+........... . .+.+||++| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~- 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRL- 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHH-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHH-
Confidence 345689999999999999999999998854433 333322223333333 2 356899999 5555555
Q ss_pred ccHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC
Q 006490 490 SNKEALASC---DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG 563 (643)
Q Consensus 490 ~~~~~~~~a---d~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 563 (643)
...+++.+ |++++|+|++++.+... ..+...+... +.|+++|+||+|+...... .+....++...+
T Consensus 95 -~~~~~~~~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 95 -VEDYFKNRWSLQMVFLLVDGRIPPQDSD-LMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp -HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred -HHHHHhcCcCceEEEEEecCCCCCCHHH-HHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 44455554 99999999988644332 2223333333 7899999999999764433 334455555545
Q ss_pred CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 564 IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 564 ~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
..+++++||++| |++++|++|.+.+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 446999999999 99999999998774
No 249
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=3.4e-19 Score=178.57 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=114.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh------hhHHhh--c
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K 81 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~ 81 (643)
+.++|+|+|++|||||||+|+|++..+. .+.+++. .......+...+..+.+|||||+..+.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT-VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS-CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE-EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 4689999999999999999999998752 2344432 2233334555667899999999887655 344555 7
Q ss_pred cCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccC
Q 006490 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM 161 (643)
Q Consensus 82 ~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (643)
.+|++++|+|+++... .. +|...+.... .+|+++|+||+|+...... .. ....+.+.++ .+++++||++|
T Consensus 81 ~~d~vi~v~D~~~~~~---~~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~~--~~~~l~~~lg--~~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NL-FLTLELFEME-VKNIILVLNKFDLLKKKGA-KI--DIKKMRKELG--VPVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HH-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-CC--CHHHHHHHHS--SCEEECBGGGT
T ss_pred CCcEEEEEecCCcchh---hH-HHHHHHHhcC-CCCEEEEEEChhcCccccc-HH--HHHHHHHHcC--CcEEEEEeCCC
Confidence 8999999999887532 22 3555555541 3999999999997643322 11 2566777776 47999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 006490 162 IQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 162 ~gi~~l~~~i~~~~~~~ 178 (643)
.|++++++.+.+.+...
T Consensus 151 ~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 151 EGVEELKRMIALMAEGK 167 (271)
T ss_dssp BTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999887544
No 250
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=1.9e-19 Score=192.22 Aligned_cols=199 Identities=18% Similarity=0.210 Sum_probs=130.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH--------Hh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~ 79 (643)
+..++|+|+|+||||||||+|+|++..+ +.+.++++... ....+..++..+.+|||||+.++....+ .+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV-VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH-HHHEEEETTEEEEECC--------------------CC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE-EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4568999999999999999999998753 44455432211 2233445678999999999876543333 36
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++|+|+|++++.+.... .|++.+. ++|+++|+||+|+...... . ... .+....+++++||+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAk 366 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAA 366 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTT
T ss_pred hhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECC
Confidence 7889999999999988776652 3666553 4799999999999765332 1 111 11122469999999
Q ss_pred cCCChhHHHHHHHHHHhCCCC-----CCCcc-ccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhh
Q 006490 160 TMIQVPDVFYYAQKAVLHPTA-----PLFDH-DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQV 223 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~~~~-----~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~ 223 (643)
+|.|++++++.+.+.+..... +.... ........+..+|.+.....+...+..+..++++....
T Consensus 367 tg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~ 436 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQ 436 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999998865431 12222 22235567777787777666656666777777765543
No 251
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=1.8e-19 Score=193.24 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=131.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-cchh--------hhHHh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE 79 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~ 79 (643)
..++|+|+|+||||||||+|+|++.. ++.++++++... ....+..++..+.+|||||+. ++.. ....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~-~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-EEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 45899999999999999999999886 455566543322 223444567889999999987 5432 23468
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++|+|+|++++.+++... +++.+ .++|+++|+||+|+... . ..+ .+..+ .+...++++|||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~~-~~~~~---~~~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NEE-EIKNK---LGTDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CHH-HHHHH---HTCSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CHH-HHHHH---hcCCCcEEEEECC
Confidence 89999999999999988876643 44444 37899999999999653 1 111 12222 2221369999999
Q ss_pred cCCChhHHHHHHHHHHhC----CCCCCCcccc-ccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 006490 160 TMIQVPDVFYYAQKAVLH----PTAPLFDHDE-QTLKPRCVRALKRIFIICDHDMDGALNDAELNEF 221 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~ 221 (643)
+|.|++++++++.+.+.. ...+.....+ ......+..+|.+............+..++++..
T Consensus 388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a 454 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA 454 (482)
T ss_dssp GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999986542 1222322222 2355666667766554443333334444555443
No 252
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=5.2e-19 Score=171.90 Aligned_cols=161 Identities=13% Similarity=0.064 Sum_probs=108.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCc----------hhhhhh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKI 488 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~-~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~----------~~~~~~ 488 (643)
...++|+|+|.+|||||||+|+|++..+ ..... +.++.......+... ....+.+|||+|. +.+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999999873 33332 333333333333322 4466778999993 333433
Q ss_pred hccHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHH---HHHHHh
Q 006490 489 LSNKEALAS---CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA---RVTQEL 562 (643)
Q Consensus 489 ~~~~~~~~~---ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~~~ 562 (643)
...+++. +|++++|+|++++.+ .....++..+... ++|+++|+||+|+..........+ +....+
T Consensus 106 --~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 106 --LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp --HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 3344444 889999999998655 3334555555443 799999999999987544322222 222232
Q ss_pred ------CCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 563 ------GIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 563 ------~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
...+++++||++| |+++++++|.+.+...
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3335999999999 9999999999988633
No 253
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=3.7e-19 Score=190.51 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=116.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCC----------cchhhhH-
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLN- 77 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~- 77 (643)
..+||+|+|+||||||||+|+|++..+ +...++++.. .....+..++..+.||||||+. .+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d-~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD-AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceee-eeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 458999999999999999999999875 3445543222 1233444566789999999973 2322222
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceEEE
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE 155 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (643)
.+++.+|++|+|+|++++.+.++. .|...+... ++|+++|+||+|+...... ..++..+.+...+.. ..++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEEE
Confidence 578999999999999999888876 488887765 8999999999999865543 333444444444432 237999
Q ss_pred eCcccCCChhHHHHHHHHHHh
Q 006490 156 CSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+||++|.|++++|+.+.+.+.
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 254
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=1.3e-18 Score=174.31 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=120.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccHHhh-
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL- 495 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~~~~- 495 (643)
.++|+++|++|||||||+|+|++..+.....|+++.+.....+... ...+.+||++|...+.. + +..++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELI--ARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHH--HHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHH--HHHhhh
Confidence 4799999999999999999999987744444666655555556555 34578899999776544 2 33344
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeec
Q 006490 496 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG-VPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 573 (643)
Q Consensus 496 -~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~-~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 573 (643)
..+|++++|+|+++.. ....+...+... + .|+++|+||+|+...+........+++.++++ ++++||+
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~Sa~ 148 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM------EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTNAK 148 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT------TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECBGG
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhc------CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEEeC
Confidence 6899999999999853 344455555554 5 99999999999876544444578889999987 9999999
Q ss_pred cC-CHHHHHHHHHHHHhCCC
Q 006490 574 SK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 574 ~g-~i~~l~~~l~~~~~~~~ 592 (643)
+| |++++++.+.+.+....
T Consensus 149 ~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GTBTHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99 99999999999886543
No 255
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=4.5e-19 Score=190.10 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=126.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCch-hhhh------hhccH
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNK 492 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-~~~~------~~~~~ 492 (643)
+..++|+|+|.||||||||+|+|++.++..+.+ |+++.+.....+...| ..+.+|||+|.. .... +.++.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHH
Confidence 456899999999999999999999988765544 4444444455555653 467889999986 4321 12256
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVS 571 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS 571 (643)
.+++.||++|+|+|++++.+++.. .++..+ . ++|+++|+||+|+... ...+....+ .+. .++++||
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l----~----~~piivV~NK~DL~~~-~~~~~~~~~---~~~~~~~i~iS 385 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDR-KILERI----K----NKRYLVVINKVDVVEK-INEEEIKNK---LGTDRHMVKIS 385 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHH-HHHHHH----T----TSSEEEEEEECSSCCC-CCHHHHHHH---HTCSTTEEEEE
T ss_pred HHhhcccEEEEEecCCCCCCHHHH-HHHHHh----c----CCCEEEEEECcccccc-cCHHHHHHH---hcCCCcEEEEE
Confidence 788999999999999998776553 333322 1 7899999999999753 122233222 332 2599999
Q ss_pred eccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHHH
Q 006490 572 MKSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSVG 621 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 621 (643)
|++| |+++++++|.+.+..... ..........|+.++++++..++.-.
T Consensus 386 Aktg~Gi~eL~~~l~~~~~~~~~--~~~~~~~~~~R~~~~l~~a~~~L~~~ 434 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQEIFE--RGSDSLITNLRQKQLLENVKGHLEDA 434 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTHHHHH--HHTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhhcC--CCCcceEhhHHHHHHHHHHHHHHHHH
Confidence 9999 999999999997542100 01112234567777788777666543
No 256
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=5.8e-19 Score=194.14 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=119.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEE------EEc--CCCcEEEEEEecCCchhhhhhhcc
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN 491 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~------v~~--~g~~~~~~i~d~~g~~~~~~~~~~ 491 (643)
....+||+++|.+|||||||+|+|++..+...+.+|++..+.... +.+ .+....+.+||++|++.+..+ .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~--~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS--H 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--C
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--H
Confidence 456799999999999999999999999888777778776655432 222 234678899999999888877 7
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEe
Q 006490 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPV 570 (643)
Q Consensus 492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v 570 (643)
..+++.+|++|+|+|+++. +....|+..+..... ++|+|+|+||+|+...... .+..+.++...+.+ +++|
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~v 187 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRI 187 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEEC
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEE
Confidence 7788999999999999875 456778888887754 6999999999999865443 55667777777876 9999
Q ss_pred eeccC-CHHHHHHHHHHHHhCCC
Q 006490 571 SMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 571 Sa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
||++| |++++++.|.+.+....
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTT
T ss_pred ecCcccCHHHHHHHHHHHHhccc
Confidence 99999 99999999999887543
No 257
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.76 E-value=4.9e-19 Score=178.01 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-hhccHHhhccCCE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASCDV 500 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~---~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-~~~~~~~~~~ad~ 500 (643)
||+++|.+|||||||++++.++.... .+.||.+..+.. + . ...++.+|||+|++++.. ...+..++++|++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988765433 234677665542 2 2 457789999999998853 1015678999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-------c-HHHHHHHHHH----hCCCC
Q 006490 501 TIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------A-VQDSARVTQE----LGIEP 566 (643)
Q Consensus 501 illv~D~s~~--~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-------~-~~~~~~~~~~----~~~~~ 566 (643)
+|+|||++++ .+++....|+..+....+ ++|+++|+||+|+..+.. + .+..+++++. +++.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~- 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS- 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE-
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce-
Confidence 9999999997 222333334444444333 799999999999986421 1 3445555654 4555
Q ss_pred cEEeeeccCCHHHHHHHHHHHHh
Q 006490 567 PIPVSMKSKDLNNVFSRIIWAAE 589 (643)
Q Consensus 567 ~~~vSa~~g~i~~l~~~l~~~~~ 589 (643)
+++|||++.++.++|..+++.+.
T Consensus 151 f~eTSAkd~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 151 FYLTSIFDHSIYEAFSRIVQKLI 173 (331)
T ss_dssp EECCCSSSSHHHHHHHHHHTTSS
T ss_pred EEEeccCCCcHHHHHHHHHHHHH
Confidence 99999997799999999987653
No 258
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=7.7e-19 Score=187.50 Aligned_cols=185 Identities=15% Similarity=0.189 Sum_probs=119.5
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhh------hhccH
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNK 492 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~------~~~~~ 492 (643)
.+..++|+|+|+||||||||+|+|++.++..+.. ++++.+.....+...| ..+.+|||+|...... +.++.
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHh
Confidence 3467899999999999999999999987765554 4444334333444443 5678899999654332 12345
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
.++..+|++++|+|++++.+... ..++..+. ..|+++|+||+|+....... ..+.+. ...++++|||
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~~~~~-~~~~~~---~~~~~i~iSA 365 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEKQLIT-SLEYPE---NITQIVHTAA 365 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCGGGST-TCCCCT---TCCCEEEEBT
T ss_pred hhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcchhhH-HHHHhc---cCCcEEEEEC
Confidence 57889999999999999877543 44544442 57999999999998754322 111111 2335899999
Q ss_pred ccC-CHHHHHHHHHHHHhCCCCCCCCcccccchhhhhhhhchhhHHHHH
Q 006490 573 KSK-DLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNSSLVFVSV 620 (643)
Q Consensus 573 ~~g-~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 620 (643)
++| |++++++.|.+.+.......++. ......|+.+++.++..++.-
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~~~~~~~~-~~~~~~R~~~~L~~a~~~L~~ 413 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTGKVQAADM-DLAINQRQAAALTQAKMSLEQ 413 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTSSSSSCCS-SCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCccc-ceechHHHHHHHHHHHHHHHH
Confidence 999 99999999999887544222222 223456777777777766543
No 259
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=4.4e-18 Score=182.27 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhh------hhh-hccHHhh
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKI-LSNKEAL 495 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~------~~~-~~~~~~~ 495 (643)
.+|+|+|+||||||||+|+|++...+.+.+ |+++.+.....+.+.| ..+.+|||+|.+.. ..+ ..+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 379999999999999999999988665544 4443334445555653 45778999997532 111 1256788
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHH-HHHHHHhCCCCcEEeeecc
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS-ARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~ 574 (643)
+.||++++|+|++++.+... ..+...+... ++|+++|+||+|+... ..... .++. .+++.+++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED-ESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH-HHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999998765432 1222223332 7999999999998542 11222 3333 46775689999999
Q ss_pred C-CHHHHHHHHHHHHh
Q 006490 575 K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~ 589 (643)
| |++++++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 150 NINLDTMLETIIKKLE 165 (439)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9 99999999998775
No 260
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=3.1e-18 Score=184.37 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=115.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeeCCcccCCceeEEEEeCCC----------CCcchhhh
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKL 76 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~ 76 (643)
....+||+++|++|||||||+|+|++.. .+...++++... ....+..++..+.|||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT-TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE-EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3456899999999999999999999876 334444432221 2234445667899999999 44444443
Q ss_pred H-HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc--cceE
Q 006490 77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC 153 (643)
Q Consensus 77 ~-~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (643)
. .+++.+|++|+|+|+++..+... ..|...+... ++|+|+|+||+|+...+.. ..++..+.+...+.. ..++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence 3 47899999999999888655443 3578888775 7999999999999876554 444444444444321 2479
Q ss_pred EEeCcccCCChhHHHHHHHHHHh
Q 006490 154 VECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
++|||++|.||+++|+.+.+.+.
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 261
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=2.6e-18 Score=176.39 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCc----chhhhHHh---hccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a 83 (643)
.+|+|+|.+|||||||+|+|++.... .+++.++...... .+... ...+.||||||+.+ +..+...+ ++.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999987632 2333222111111 12222 36899999999643 23343444 4559
Q ss_pred CEEEEEEECCC---cccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 84 d~il~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
|++|+|+|+++ +.+++.+. .|..++..+. .++|+++|+||+|+... .+..+.+.+.+....++++||
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred cEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 99999999998 78888887 5888888764 37999999999998642 233455666665324689999
Q ss_pred cccCCChhHHHHHHHHHHhCCCC-CCCc
Q 006490 158 ATTMIQVPDVFYYAQKAVLHPTA-PLFD 184 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~~~-~~~~ 184 (643)
|+++.|++++++++.+.+..... +.|+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 99999999999999998865443 3443
No 262
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=6.8e-18 Score=173.21 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhh----hhh-hccHHhhccC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEALASC 498 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~----~~~-~~~~~~~~~a 498 (643)
.+|+|+|.+|||||||+|+|++........+.++.......+..+ ....+.+||++|.... ..+ ......+..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 469999999999999999999876543333422222334456666 3457889999996431 112 1133445679
Q ss_pred CEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCC-CCcEEeeecc
Q 006490 499 DVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-EPPIPVSMKS 574 (643)
Q Consensus 499 d~illv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~ 574 (643)
|++|+|+|+++ +.+++....|..++..+.... .++|+++|+||+|+.... +..+++++.++. .++++|||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEAA---ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTHH---HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCCH---HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 778888888999988764321 179999999999997632 345677777763 3589999999
Q ss_pred C-CHHHHHHHHHHHHhCC
Q 006490 575 K-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~~~ 591 (643)
+ |+++++++|.+.+...
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 9 9999999999988643
No 263
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=8.8e-18 Score=170.43 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=110.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-CcccceEEEEEEcCCCcEEEEEEecCCch-hhhh-----h-hccHH
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK-----I-LSNKE 493 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-~~~~-----~-~~~~~ 493 (643)
..+|+|+|+||||||||+|+|++..+..++. + |+... ....+.. +...+.++||+|.. .... + .....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3579999999999999999999998766544 3 44332 2223333 34577889999986 2211 1 11456
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCCCC-ccccHHHHHHHHHHhCCCCcEEee
Q 006490 494 ALASCDVTIFVYDSSDEYSWKRTKELLV-EVARLGEDSGYGVPCLLIASKDDLKP-YTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~s~~~~~~~~~-~i~~~~~~~~~~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
+++.+|++++|+|+++ .+ ....++. .+... +.|+++|+||+|+.. .....+..+++.+.+++.+++++|
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~------~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG------KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS------SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc------CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 7899999999999987 33 2223333 33322 789999999999986 233345666677777775689999
Q ss_pred eccC-CHHHHHHHHHHHHh
Q 006490 572 MKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~ 589 (643)
|++| |++++++.+.+.+.
T Consensus 156 A~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999 99999999998764
No 264
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=3.6e-18 Score=165.31 Aligned_cols=149 Identities=18% Similarity=0.293 Sum_probs=100.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhcc----C
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----A 83 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----a 83 (643)
...+.++|+|+|++|||||||+++|++..+....+....+.. ..+ ....+.+|||||++.+...+..+++. +
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--ADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE--TTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE--EEe--eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 355678999999999999999999999886442222111111 112 56789999999999988888888877 8
Q ss_pred CEEEEEEECC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEecccCCCCCccchh----hhhhhHHHHhhcccceE
Q 006490 84 DAVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREIETC 153 (643)
Q Consensus 84 d~il~v~d~~-~~~s~~~~~~~~~~~l~~-----~~~~~pvilv~NK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 153 (643)
|++|+|+|++ ++.++..... |+..+.. ...++|+++|+||+|+......... .+.+..+....+ .++
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 160 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK--KSL 160 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh--ccc
Confidence 9999999999 8888888875 5554432 2358999999999999876543111 233444444444 258
Q ss_pred EEeCcccCCC
Q 006490 154 VECSATTMIQ 163 (643)
Q Consensus 154 ~~~Sa~~~~g 163 (643)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999998865
No 265
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=6.4e-18 Score=171.47 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCC-c--------chhhhHHh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-E--------NKGKLNEE 79 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~~~ 79 (643)
+..+|+|+|+||||||||+|+|++..+. ...++++. .+....+..++..+.+|||||+. . +......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 4457999999999999999999998753 22333221 11223344567889999999987 2 22334467
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcc
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT 159 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (643)
++.+|++++|+|+++ -+. ....+...+... +.|+++|+||+|+..... ...+.+..+.+.++ ...++++||+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~-~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTP--DDEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMN-FLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTC-CCH--HHHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSC-CSEEEECCTT
T ss_pred HhcCCEEEEEEeCCC-CCH--HHHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcC-cCceEEEECC
Confidence 889999999999877 332 222344555543 799999999999875211 23344455555444 2368999999
Q ss_pred cCCChhHHHHHHHHHHh
Q 006490 160 TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 ~~~gi~~l~~~i~~~~~ 176 (643)
+|.|++++++.+.+.+.
T Consensus 158 ~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999887654
No 266
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.73 E-value=1e-17 Score=165.06 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=109.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceeEEEEeCCCCCc--------chhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLE--------NKGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~ 78 (643)
..+.+||+|+|++|||||||+|+|++..+.....+..+++ .....+..++..+.||||||+.. +......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4567999999999999999999999988544322111111 22234455678899999999843 3233333
Q ss_pred hh----ccCCEEEEEEECCCcccHHHHHHHHHHHHHhc-C---CCCcEEEEEecccCCCCCccchh----hhhhhHHHHh
Q 006490 79 EL----KRADAVVLTYACNQQSTLSRLSSYWLPELRRL-E---IKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQ 146 (643)
Q Consensus 79 ~~----~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~-~---~~~pvilv~NK~D~~~~~~~~~~----~~~~~~~~~~ 146 (643)
++ +.+|++|+|+|+++....+ ..+++.+... + .+.|+|||+||+|+......... .+.++.+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 9999999999997532222 2344455432 1 26899999999999754211001 1345777777
Q ss_pred hcccceEEEeCccc-----CCChhHHHHHHHHHHhCCCCCCCcc
Q 006490 147 FREIETCVECSATT-----MIQVPDVFYYAQKAVLHPTAPLFDH 185 (643)
Q Consensus 147 ~~~~~~~~~~Sa~~-----~~gi~~l~~~i~~~~~~~~~~~~~~ 185 (643)
++.. ++.+++.. +.|+.+|++.+.+.+.......|..
T Consensus 175 ~g~~--~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~ 216 (247)
T 3lxw_A 175 CGGR--VCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSN 216 (247)
T ss_dssp TTTC--EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred cCCe--EEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 7753 44444433 6899999999988887655555544
No 267
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.73 E-value=2.1e-18 Score=181.64 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=109.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCee-eCCcccCCceeEEEEeCCCCCcchhh-------hH
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGK-------LN 77 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~ 77 (643)
.....++|+|+|++|||||||+|+|++..+. ...++++.... ....+. ....+.+|||||+.++... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 3455689999999999999999999998853 23333222111 222222 2238999999999866443 34
Q ss_pred HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 78 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
.+++.+|++|+|+|++ .. .....|+..+.+. ++|+++|+||+|+...... +..+.+.+.++ .+++++|
T Consensus 109 ~~l~~aD~vllVvD~~-~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g--~~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSA-PT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE--AKVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSS-CC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT--CCCCCCS
T ss_pred HHHhcCCEEEEEEeCC-Ch---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC--CCEEEEE
Confidence 6889999999999982 22 2223588888887 8999999999999875433 33444555554 3689999
Q ss_pred cccCCChhHHHHHHHHHHhCC
Q 006490 158 ATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~~~ 178 (643)
|++|.|++++++.+.+.+...
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999987543
No 268
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=8.1e-18 Score=167.62 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=109.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCeeeCCcccCCceeEEEEeCCCCCcchhh-----------
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----------- 75 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 75 (643)
..+.++|+|+|++|||||||+|+|++.. +.....+. .+.......+...+..+.||||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999987 33332221 1122222234456788999999998754322
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEe-cccCCCCCccchh-----hhhhhHHHHh
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSL-----EEVMGPIMQQ 146 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~N-K~D~~~~~~~~~~-----~~~~~~~~~~ 146 (643)
...+++.+|++|+|+|+++..... ..+...+.+.. ...|+++|+| |+|+...... .. ...+..+...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLM-DYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH-HHHHHCCCHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCccHH-HHHHhcchHHHHHHHHH
Confidence 223778999999999998633222 22334443321 1457776666 9999743211 00 0223345555
Q ss_pred hcccce-E--EEeCcccCCChhHHHHHHHHHHhCCCCCCCc
Q 006490 147 FREIET-C--VECSATTMIQVPDVFYYAQKAVLHPTAPLFD 184 (643)
Q Consensus 147 ~~~~~~-~--~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~ 184 (643)
++.... + +++||++|.|++++|+.+.+.+.......|.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~ 215 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT 215 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 553211 2 7899999999999999999988655434454
No 269
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=2.3e-18 Score=185.83 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=115.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceeEEEEeCCCCCcchhhhHHhhccCCEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVV 87 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 87 (643)
++..+|+|+|++|+|||||+++|++..+... .++++... ....+. ..+..+.||||||++.+..++..+++.+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i-~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI-GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-TSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-eEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3457899999999999999999998765433 23322111 111222 24568999999999999999989999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhH---HHHhhcccceEEEeCcccCCCh
Q 006490 88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP---IMQQFREIETCVECSATTMIQV 164 (643)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~gi 164 (643)
+|+|+++....+... ++..+... ++|+++|+||+|+...... .....+.. ....++...+++++||++|.|+
T Consensus 81 LVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999877665543 45555555 7899999999998754322 11111111 1122222247899999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++++.+...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999988764
No 270
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=4.9e-18 Score=178.85 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh-----hccHHh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEA 494 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~-----~~~~~~ 494 (643)
...++|+|+|.+|+|||||+|+|++..+..++. ++++.+.....+... +...+.+|||+|.+.+..+ .++..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 456899999999999999999999998754443 433444445555555 3447889999998765432 224668
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeecc
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 574 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 574 (643)
+..+|++|+|+|++.. .....|+..+.+. ++|+++|+||+|+...... +..+++++.++++ ++++||++
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~-v~~vSAkt 179 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK-VLLVSALQ 179 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC-CCCCSSCC
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC-EEEEECCC
Confidence 8999999999999433 3456677777766 7999999999999875443 5566666777775 99999999
Q ss_pred C-CHHHHHHHHHHHHhCC
Q 006490 575 K-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 575 g-~i~~l~~~l~~~~~~~ 591 (643)
| |++++|+.|.+.+...
T Consensus 180 g~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTSTTTHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHhhhhh
Confidence 9 9999999999998544
No 271
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=4.3e-17 Score=169.78 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcch---------hhhHHh
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK---------GKLNEE 79 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~ 79 (643)
...++|+++|.+|||||||+|+|++..+. ...+.++.... ...+...+..+.+|||||+.... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 45689999999999999999999988742 22333222221 12233346789999999986431 111234
Q ss_pred hccCCEEEEEEECCCcc--cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeC
Q 006490 80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS 157 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (643)
...+|++|+|+|+++.. +++... .|+..+.....++|+++|+||+|+...... +....+....+ .++++||
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence 45699999999998876 667665 588888765448999999999999753211 12233333333 3689999
Q ss_pred cccCCChhHHHHHHHHHHh
Q 006490 158 ATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~ 176 (643)
|++|.|++++++++.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999988763
No 272
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=1.3e-16 Score=168.89 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=114.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--C-Ccc--------cceE----EEEEEc---CCCcEEEEEEecCCc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--P-TTG--------EQYA----VNVVDQ---PGGNKKTLILQEIPE 482 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~-t~~--------~~~~----~~~v~~---~g~~~~~~i~d~~g~ 482 (643)
...++|+++|.+|+|||||+|+|++........ . +.. ..+. ...... .+....+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 456899999999999999999999864332110 0 000 0000 000000 011257789999999
Q ss_pred hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHh
Q 006490 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 562 (643)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~ 562 (643)
+.+... +...+..+|++++|+|++++.++.+..+++..+.... ..|+++|+||+|+.+.....+..+++.+.+
T Consensus 86 ~~~~~~--~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 86 EVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp GGGHHH--HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 888776 6788899999999999999876677777777665542 358999999999987544333333444333
Q ss_pred ---C--CCCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 563 ---G--IEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 563 ---~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
+ ..+++++||++| |++++++.|.+.+..+.
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 2 225999999999 99999999998775443
No 273
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.71 E-value=7.1e-17 Score=170.94 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CC----------CCCCeeeC---Cccc-----CCceeEEEEeCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP----------VHAPTRLP---PDFY-----PDRVPVTIIDTS 67 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~--~~----------~~~~~~~~---~~~~-----~~~~~~~i~Dt~ 67 (643)
...+.++|+++|++|+|||||+|+|++....... .. ........ .... .....+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567799999999999999999999985422110 00 00000000 0001 112789999999
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF 147 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 147 (643)
|++.+...+...+..+|++|+|+|+++..+..... .|+..++... .+|+++|+||+|+...... .+..+++.+.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~---~~~~~~i~~~l 158 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEA---LSQYRQIKQFT 158 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHH---HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHH---HHHHHHHHHHH
Confidence 99999988889999999999999999887555555 3666666553 3599999999999754221 12222232222
Q ss_pred c----ccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 148 R----EIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 148 ~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
. ...+++++||++|.|+++|++.+.+.+..+
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1 123699999999999999999998876544
No 274
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.71 E-value=2.1e-16 Score=164.61 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=116.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhh-----h--hccHH
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I--LSNKE 493 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~-----~--~~~~~ 493 (643)
...++|+++|.+|||||||+|+|++........+.++.......+... ...+.+|||+|...... + .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999987533333333333334444333 45678899999643210 0 00122
Q ss_pred hhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490 494 ALASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+...... +....+++..+++ +++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~-~~~iS 316 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEENI-KRLEKFVKEKGLN-PIKIS 316 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHHH-HHHHHHHHHTTCC-CEECB
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHHH-HHHHHHHHhcCCC-eEEEe
Confidence 335699999999999876 67777888888877543 6899999999999874432 3344556666765 99999
Q ss_pred eccC-CHHHHHHHHHHHHh
Q 006490 572 MKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 572 a~~g-~i~~l~~~l~~~~~ 589 (643)
|++| |+++++++|.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999 99999999999874
No 275
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.6e-17 Score=160.75 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=101.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~---~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (643)
...++|+|+|++|||||||+|+|++..+... +.+++...+ ....+.+||++|++.+... ...+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH--HHHHHHh
Confidence 4568999999999999999999999876542 334433322 3345778999999887665 5566665
Q ss_pred ----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCcccc-------HHHHHHHHHHhCC
Q 006490 498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQELGI 564 (643)
Q Consensus 498 ----ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~ 564 (643)
+|++++|+|++ ++.++.....|+..+...... ...++|+++|+||+|+...... .+.+..++...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 888889888888877654211 0017999999999999875432 3445666666666
Q ss_pred CCcEEeeeccC
Q 006490 565 EPPIPVSMKSK 575 (643)
Q Consensus 565 ~~~~~vSa~~g 575 (643)
. ++++||++|
T Consensus 159 ~-~~~~Sa~~~ 168 (218)
T 1nrj_B 159 S-LNEVERKIN 168 (218)
T ss_dssp H-HHC------
T ss_pred c-ccccccccc
Confidence 5 899999998
No 276
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=1.1e-16 Score=165.97 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=108.1
Q ss_pred ceEE-EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh------hhhhhccHHh
Q 006490 422 NVFR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA 494 (643)
Q Consensus 422 ~~~k-i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~------~~~~~~~~~~ 494 (643)
..++ |+|+|++|||||||+|+|++..+.....+.++.+.....+.++| ..+.+|||+|.-. .+.+..+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence 3455 99999999999999999999876333333333334455566664 5677899999511 1222224567
Q ss_pred hccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHHHHHh-C-CCCcE
Q 006490 495 LASCDVTIFVYDSSDEY--SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL-G-IEPPI 568 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~--s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~-~-~~~~~ 568 (643)
+..||++++|+|++++. .++....|...+...... +.|+++|+||+|+...... ......+++.+ . .++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~---~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS---GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC---SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC---CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence 89999999999999876 555555555444443221 6899999999999764311 22333445555 2 12479
Q ss_pred EeeeccC-CHHHHHHHHHHHHhCC
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
++||++| |++++++.|.+.+..+
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhccc
Confidence 9999999 9999999999977543
No 277
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=157.36 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=104.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCeeeCCcccCCceeEEEEeCCCCCcc-----------hhh
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----------KGK 75 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~ 75 (643)
....+||+|+|++|||||||+|+|++..+... .++ ..+.......+...+..+.||||||+... ...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999999886443 221 11111122334456778999999997532 222
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCCCCCccc----hhhhhhhHHHHhhc
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFR 148 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~~~~~~~----~~~~~~~~~~~~~~ 148 (643)
...+++++|++|+|+|+++....+. .|+..+... ....|+++|+||+|+....... ...+.++.+.+.++
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 3355678899999999876544222 244444321 1246999999999987653320 01235677778887
Q ss_pred ccceEEEeCccc-----CCChhHHHHHHHHHHhCCC
Q 006490 149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 149 ~~~~~~~~Sa~~-----~~gi~~l~~~i~~~~~~~~ 179 (643)
. .++.+++.. +.++.+|++.+.+.+....
T Consensus 183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 5 466666553 3789999998887765433
No 278
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=8.4e-17 Score=173.55 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=111.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC----C---CCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHh
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES----V---PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEE 79 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 79 (643)
..++.++|+++|++++|||||+++|++.. . ... .++++ .......+..++..+.+|||||++++...+...
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGIT-IDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccE-EecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 34567899999999999999999999876 1 111 11111 000112233456899999999998888888889
Q ss_pred hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-cc-cceEEEeC
Q 006490 80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETCVECS 157 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~S 157 (643)
+..+|++|+|+|+++....+.. .++..++.. ++|+|+|+||+|+..........+.+..+.... +. ..+++++|
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred HhhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 9999999999999874332222 234445555 789999999999975321101122333333332 10 24799999
Q ss_pred cccCCChhHHHHHHHHHHh
Q 006490 158 ATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 158 a~~~~gi~~l~~~i~~~~~ 176 (643)
|++|.|+++|++.+.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998764
No 279
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=1.1e-16 Score=165.99 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=104.5
Q ss_pred CCccE-EEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc--hh------hhHHh
Q 006490 10 RTGVR-VVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KG------KLNEE 79 (643)
Q Consensus 10 ~~~~k-I~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~------~~~~~ 79 (643)
+..++ |+|+|++|||||||+|+|++..+. .+.++++... ....+...+..+.+|||+|+... .. .+-..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~-~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP-KRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCS-CEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC-EEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence 34566 999999999999999999998742 2233222111 11233334578999999996321 11 11235
Q ss_pred hccCCEEEEEEECCCcc--cHHHHHHHHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhh-cccceEEE
Q 006490 80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCVE 155 (643)
Q Consensus 80 ~~~ad~il~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (643)
+..+|++++|+|++++. ..+.+. .|.+.+...+ .++|+++|+||+|+...... ........+...+ ....++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEEE
Confidence 78999999999998876 444443 4666666543 47899999999998753211 1111222233444 21125799
Q ss_pred eCcccCCChhHHHHHHHHHHhCC
Q 006490 156 CSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
+||++|.|++++++.+.+.+..+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhccc
Confidence 99999999999999998876543
No 280
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=1e-16 Score=174.06 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------C------CCCCCCCeeeCCcccCCceeEEEEeCC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-----------------K------VPPVHAPTRLPPDFYPDRVPVTIIDTS 67 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 67 (643)
+..+|+|+|++|||||||+|+|+...... + .+++. .......+...++.++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence 34689999999999999999997221100 0 01100 111222344567899999999
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
|+.++...+..+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999887776654 55566665 7999999999999654
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=3.9e-17 Score=165.69 Aligned_cols=132 Identities=10% Similarity=0.045 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHH
Q 006490 27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY 104 (643)
Q Consensus 27 sL~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~ 104 (643)
+|+++++.+.|. ..+.++.+.... ..+..++ .+.+||| ++++..+++.+++++|++|+|||++++. +++.+. +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 688888888887 665555554332 2232333 7999999 8889999999999999999999999987 677766 6
Q ss_pred HHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 105 ~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
|+..++.. ++|++||+||+|+.....+ +....+.+.+....++++|||++|.||+++|.
T Consensus 107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHH
Confidence 98888764 8999999999999753211 22345555554224699999999999999886
No 282
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.67 E-value=3.8e-17 Score=174.94 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=108.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEE
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL 88 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 88 (643)
++..+|+++|++++|||||+++|.+..+... .++++.. .....+..++..++||||||++.|...+...+..+|++|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~-i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQH-IGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCC-SSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEe-EEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3456899999999999999999987654332 2221111 1112344456789999999999998888888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhh---hHHHHhhcccceEEEeCcccCCChh
Q 006490 89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMIQVP 165 (643)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~ 165 (643)
|+|+++....+... .+..+... ++|+|+|+||+|+...+.. .....+ ..+...++...+++++||++|.|++
T Consensus 81 VVda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 81 VVAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EeecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99998853322221 33344444 7899999999999753211 111110 1112233333479999999999999
Q ss_pred HHHHHHHH
Q 006490 166 DVFYYAQK 173 (643)
Q Consensus 166 ~l~~~i~~ 173 (643)
++++.+..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99998764
No 283
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.67 E-value=2.7e-16 Score=167.78 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=106.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCCC------------------------CC---CCCCee--eCCccc
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV------------------------PP---VHAPTR--LPPDFY 55 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~------------------------~~---~~~~~~--~~~~~~ 55 (643)
...+..++|+++|++|+|||||+++|+... +.... .. ..+.+. ....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 345677999999999999999999996653 11100 00 001111 222344
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCccc---HH--HHHHHHHHHHHhcCCCCc-EEEEEecccCCC
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS--RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG 129 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s---~~--~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~ 129 (643)
..+..+.||||||++++...+..+++.+|++|+|+|+++... ++ ....+.+..+... ++| +|+|+||+|+..
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 567899999999999998888899999999999999987642 11 1111233344444 677 999999999864
Q ss_pred CCc--c--chhhhhhhHHHHhhcc----cceEEEeCcccCCChhHHHH
Q 006490 130 DHN--A--TSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 130 ~~~--~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~ 169 (643)
... . ....+.+..+.+.++. ..+++++||++|.|+.++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 0 0112233344444442 23689999999999999665
No 284
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-16 Score=149.03 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=86.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhcc----CC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD 84 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad 84 (643)
....++|+|+|++|||||||+|+|++..+....+....... ....++.+.+|||||+..+...+..++.. +|
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 35678999999999999999999999876442211111111 12256789999999999887777777665 89
Q ss_pred EEEEEEECC-CcccHHHHHHHHHHHHH-h----cCCCCcEEEEEecccCCCCCc
Q 006490 85 AVVLTYACN-QQSTLSRLSSYWLPELR-R----LEIKVPIIVAGCKLDLRGDHN 132 (643)
Q Consensus 85 ~il~v~d~~-~~~s~~~~~~~~~~~l~-~----~~~~~pvilv~NK~D~~~~~~ 132 (643)
++|+|||++ +..++..+.. |+..+. . ...++|+++|+||+|+.....
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 999999999 8888888775 554443 2 235899999999999986543
No 285
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.67 E-value=4.5e-16 Score=158.32 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CC----------------------Ceee--C--C-----cc
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HA----------------------PTRL--P--P-----DF 54 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~----~~----------------------~~~~--~--~-----~~ 54 (643)
....+|+|+|++|||||||+|+|++..+.+...+. .+ ++.. . . .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998864221110 00 0000 0 0 00
Q ss_pred -----------------cCCceeEEEEeCCCCCc-------------chhhhHHhhccCCEEE-EEEECCCcccHHHHHH
Q 006490 55 -----------------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLSS 103 (643)
Q Consensus 55 -----------------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il-~v~d~~~~~s~~~~~~ 103 (643)
......+.||||||+.. +......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~- 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence 01136899999999753 2344557888888766 799988765444432
Q ss_pred HHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhc-ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 104 ~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
.|+..+... +.|+++|+||+|+...... ..+.++.....+. ...+++++||++|.|++++++.+.+..
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 356666544 7899999999999764332 1111111000110 123578999999999999999988743
No 286
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.65 E-value=1.2e-15 Score=151.93 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=104.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCC-cccceEEEEEEcCCCcEEEEEEecCCchhhhhh--------h-
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI--------L- 489 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-~~t-~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~--------~- 489 (643)
...++|+|+|.+|||||||+|+|++....... .++ ++.......+... ...+.+|||+|....... .
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 45689999999999999999999998744433 343 3333444444444 356788999997543211 0
Q ss_pred ccHHhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCCCCcEEEEEe-CCCCCCccccH-------HHHHHHHH
Q 006490 490 SNKEALASCDVTIFVYDSSDEYSW-KRTKELLVEVARLGEDSGYGVPCLLIAS-KDDLKPYTMAV-------QDSARVTQ 560 (643)
Q Consensus 490 ~~~~~~~~ad~illv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~~~pvilv~N-K~Dl~~~~~~~-------~~~~~~~~ 560 (643)
....+++.+|++|+|+|+++.... ..+..++..+..... +.|.++|+| |+|+....... .....+.+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~----~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA----MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh----hccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence 023467899999999999862221 122233333321111 356666666 99997532111 23444666
Q ss_pred HhCCC----CcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490 561 ELGIE----PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 561 ~~~~~----~~~~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
..+.. ..+++||++| |++++|+.|.+.+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 65532 1278999999 999999999998753
No 287
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.65 E-value=1e-15 Score=165.09 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=107.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPF-------SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~-------~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~ 494 (643)
..++|+++|.+|+|||||+++|++... .....+.++.+.....+.++ ...+.+||++|++.+... +...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~--~~~~ 93 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRA--VVSA 93 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHH--HHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHH--HHHH
Confidence 468999999999999999999998761 11222222222222223334 367888999999887665 6778
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHh-CC--CCcE
Q 006490 495 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQEL-GI--EPPI 568 (643)
Q Consensus 495 ~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~-~~--~~~~ 568 (643)
+..+|++++|+|++++.. .+..+.+..+... ++|+++|+||+|+.+.... .++..++.+.. ++ .+++
T Consensus 94 ~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPK-TQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 899999999999998532 2222333333333 7899999999999864322 34445555555 33 3599
Q ss_pred EeeeccC-CHHHHHHHHHHHHh
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++||++| |++++++.|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999 99999999999775
No 288
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1.2e-15 Score=162.92 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=105.1
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~ 468 (643)
.+..++|+++|.+|+|||||+|+|++........ +.++.+.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4567899999999999999999997653221110 122223333445554
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-vilv~N 541 (643)
...+.+|||+|++.+... +..++..||++|+|+|++++.. | .+..+.+..+... ++| +|+|+|
T Consensus 94 --~~~~~iiDTPGh~~f~~~--~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviN 163 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPN--MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLIN 163 (439)
T ss_pred --CeEEEEEECCChHHHHHH--HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEee
Confidence 357889999999988765 6778899999999999998642 1 1233333333333 677 999999
Q ss_pred CCCCCCcc-------ccHHHHHHHHHHhCCC-----CcEEeeeccC-CHHHHHH
Q 006490 542 KDDLKPYT-------MAVQDSARVTQELGIE-----PPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 542 K~Dl~~~~-------~~~~~~~~~~~~~~~~-----~~~~vSa~~g-~i~~l~~ 582 (643)
|+|+.... ...++...+.+.+++. +++++||++| |++++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99996421 1134555566667652 5899999999 9998655
No 289
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=4e-16 Score=168.95 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=101.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------------C------CCCCCCCeeeCCcccCC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE------------------------K------VPPVHAPTRLPPDFYPD 57 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~ 57 (643)
++.+||+++|++|+|||||+|+|++.. +.. + .+++. .......+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFSTH 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSS-CCCCEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcc-eEeeeEEEecC
Confidence 456899999999999999999998652 100 0 01110 00012234456
Q ss_pred ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHH-----HHHHHHHHHHhcCCCCcEEEEEecccCCCCCc
Q 006490 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (643)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~ 132 (643)
+..+.||||||++++...+..+++.+|++|+|+|+++..+... ...+.+..+.... ..|+|+|+||+|+...+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCcccchH
Confidence 7899999999999999999999999999999999988644321 1112333344431 357999999999976432
Q ss_pred cchhhh---hhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490 133 ATSLEE---VMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (643)
Q Consensus 133 ~~~~~~---~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 168 (643)
. ..++ .+..+...++. ..+++++||++|.|+.++.
T Consensus 189 ~-~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 189 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp H-HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred H-HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 2 2222 22333333332 2368999999999998753
No 290
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.65 E-value=9.3e-18 Score=181.15 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=114.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+.++|+|+|.+|+|||||+++|.+..+...+.++++.++....+.++ ....+.+|||+|++.+..+ +..++..+|++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~--~~~~~~~aD~v 79 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAM--RARGTQVTDIV 79 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTS--BBSSSBSBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHH--HHHHHccCCEE
Confidence 35689999999999999999999887766666655544444445554 2336778999999988877 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHH---HHHhC-CCCcEEeeeccC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV---TQELG-IEPPIPVSMKSK 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~---~~~~~-~~~~~~vSa~~g 575 (643)
++|+|++++...+.. ..+..+... ++|+++|+||+|+...... ......+ +..++ ..+++++||++|
T Consensus 80 ILVVDa~dg~~~qt~-e~l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 80 ILVVAADDGVMKQTV-ESIQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp EEECBSSSCCCHHHH-HHHHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 999999997664443 333444433 7999999999999753211 1121111 11111 125899999999
Q ss_pred -CHHHHHHHHHHHHhCC
Q 006490 576 -DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 576 -~i~~l~~~l~~~~~~~ 591 (643)
|++++++.+...+..+
T Consensus 153 ~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 153 ENMMALAEATIALAEML 169 (537)
T ss_dssp CSSHHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHhhhcc
Confidence 9999999999987643
No 291
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=2.6e-15 Score=164.19 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=115.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CC------CCcccceEEEEEEc-CCCcEEEEEEecCCch
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------YA------PTTGEQYAVNVVDQ-PGGNKKTLILQEIPEE 483 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-----------~~------~t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~ 483 (643)
+..+|+|+|.+|+|||||+++|+...-... .+ .|.........+.. .|....+.+|||+|+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 457899999999999999999986311100 00 01111111111222 3345678899999998
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (643)
.+... ...++..||++|+|+|++++.+.+....|..... . ++|+++|+||+|+.... ..+..+++.+.++
T Consensus 85 dF~~e--v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYE--VSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHH--HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHHH--HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 88765 6778899999999999999988777777765543 2 89999999999997643 2345566777777
Q ss_pred CC--CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 564 ~~--~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
+. +++++||++| |++++++++.+.+..|.
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 74 4899999999 99999999999887554
No 292
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=4.7e-15 Score=157.18 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=102.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----cEEEEEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLIL 477 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~--t~~~~~~~~~v~~-------------~--g~----~~~~~i~ 477 (643)
..++|+++|.+++|||||+++|++.... ....+ |....+....+.. + |. ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999999965422 22223 4444443332211 1 11 2578899
Q ss_pred ecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHH
Q 006490 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQD 554 (643)
Q Consensus 478 d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~ 554 (643)
|++|++.+... +...+..+|++++|+|++++....+..+.+..+... . ..|+++|+||+|+...... .++
T Consensus 87 DtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~----~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 87 DSPGHETLMAT--MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-G----IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp ECSSHHHHHHH--HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T----CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred ECCCHHHHHHH--HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-C----CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999887664 566778899999999999653112222333333322 1 3589999999999865432 334
Q ss_pred HHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 555 SARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 555 ~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
+.++.+.+. ..+++++||++| |++++++.|.+.+..+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 444444421 225999999999 9999999999877544
No 293
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.64 E-value=4.2e-16 Score=165.20 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=113.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CCC-----CCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~--------~~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
.+..++|+++|++|+|||||+++|++. .+... ... ..+.+. ....+...+..+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 11110 000 000111 1223445678899999999999
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~ 149 (643)
+...+..++..+|++|+|+|+++....+.. +|+..++.. ++| +++|+||+|+..+.... ...+.+..+...++.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 988888999999999999999887654432 466777666 788 89999999997532110 112234455555542
Q ss_pred ---cceEEEeCcccCCC------------------hhHHHHHHHHHHhC
Q 006490 150 ---IETCVECSATTMIQ------------------VPDVFYYAQKAVLH 177 (643)
Q Consensus 150 ---~~~~~~~Sa~~~~g------------------i~~l~~~i~~~~~~ 177 (643)
..+++++||++|.| +.+|++.+...+..
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 24799999999987 66777776665543
No 294
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.64 E-value=1.9e-15 Score=165.65 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=113.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCC----------CcccceEEEEEEc-CCCcEEEEEEecCCch
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-------YAP----------TTGEQYAVNVVDQ-PGGNKKTLILQEIPEE 483 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-------~~~----------t~~~~~~~~~v~~-~g~~~~~~i~d~~g~~ 483 (643)
+..+|+|+|.+++|||||+++|+...-... ... |.........+.. .|....+.+|||+|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 356899999999999999999986321110 000 1111111111211 4445778899999998
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (643)
.+... ...++..+|++|+|+|++++.+++....|..... . ++|+++|+||+|+.... ..+..+++.+.++
T Consensus 83 dF~~e--v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg 152 (599)
T 3cb4_D 83 DFSYE--VSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-M------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG 152 (599)
T ss_dssp GGHHH--HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred HHHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence 88766 6788999999999999999887777777765543 2 79999999999997643 3445667777777
Q ss_pred CC--CcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 564 IE--PPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 564 ~~--~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
+. +++++||++| |++++++.+.+.+..|.
T Consensus 153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred CCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 74 5899999999 99999999999887554
No 295
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=5.1e-15 Score=157.09 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=109.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC--CcccceEEEEEEc-------------C--CC----cEEEEE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFS---ENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI 476 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~---~~~~~--t~~~~~~~~~v~~-------------~--g~----~~~~~i 476 (643)
+..++|+++|.+++|||||+++|++.... ....+ |....+....+.. + |. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999965322 22223 4444443332211 1 11 257889
Q ss_pred EecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HH
Q 006490 477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQ 553 (643)
Q Consensus 477 ~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~ 553 (643)
||++|++.+... ....+..+|++++|+|++++....+..+.+..+.... ..|+++|+||+|+...... .+
T Consensus 88 iDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 88 IDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EECCChHHHHHH--HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999887664 5677789999999999996531122223222333221 3589999999999875432 22
Q ss_pred HHHHHHHHh--CCCCcEEeeeccC-CHHHHHHHHHHHHhCCC
Q 006490 554 DSARVTQEL--GIEPPIPVSMKSK-DLNNVFSRIIWAAEHPH 592 (643)
Q Consensus 554 ~~~~~~~~~--~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~~ 592 (643)
++.++.+.. ...+++++||++| |+++++++|.+.+..+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 333333331 1235999999999 99999999998775443
No 296
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=1.6e-15 Score=160.87 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=100.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCC-CeeeCCc---------c------c--C----CceeEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHA-PTRLPPD---------F------Y--P----DRVPVT 62 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~-~~~~~~~---------~------~--~----~~~~~~ 62 (643)
..+.++|+++|++++|||||+++|++.. +... .++.+- ....... + . . ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999999643 2222 121111 1000000 0 1 1 126899
Q ss_pred EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141 (643)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~ 141 (643)
||||||++.+...+...+..+|++|+|+|+++.. ..+.. ..+..++... ..|+++|+||+|+..........+.+.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK--EHLMALEILG-IDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH--HHHHHHHHTT-CCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH--HHHHHHHHcC-CCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999998887776667778889999999998653 22221 1223334332 358999999999976543211222333
Q ss_pred HHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 142 PIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 142 ~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
.+..++ ....+++++||++|.|+++|++.+.+.+..+
T Consensus 162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 443332 1224799999999999999999998876544
No 297
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=150.44 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=104.4
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCcEEEEEEecCCch-----------hhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEE-----------GVK 486 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-----------~~~ 486 (643)
....++|+|+|++|||||||+|+|++..+.....+ +++.......+... ...+.+|||+|.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34579999999999999999999999887655544 34444444445554 3567889999932 222
Q ss_pred hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccH-------HHHHHHH
Q 006490 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-------QDSARVT 559 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~-------~~~~~~~ 559 (643)
.. ...++..+|++|+|+|+++... ....++..+....... ...|+++|+||+|+....... +.++.+.
T Consensus 104 ~~--~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RC--ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HH--HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred HH--HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 22 3445678899999999986433 1233333332211100 056999999999987644332 4577788
Q ss_pred HHhCCCCcEEeeec-----cC-CHHHHHHHHHHHHhC
Q 006490 560 QELGIEPPIPVSMK-----SK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 560 ~~~~~~~~~~vSa~-----~g-~i~~l~~~l~~~~~~ 590 (643)
+..+.. ++.+++. ++ ++.++++.+.+.+..
T Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 179 DIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888876 6777655 34 789999999887753
No 298
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=3.2e-16 Score=157.10 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-------CCCCCCeeeCCccc--CCceeEEEEeCCCCCcc-------h
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESV-PEKV-------PPVHAPTRLPPDFY--PDRVPVTIIDTSSSLEN-------K 73 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~-------~ 73 (643)
..++|+|+|.+|||||||+|+|++... ...+ .++.+.......+. +..+.+.+|||||+... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999988763 3333 22222222222233 33468999999998432 1
Q ss_pred hhh-------HHhhcc-------------CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc
Q 006490 74 GKL-------NEELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133 (643)
Q Consensus 74 ~~~-------~~~~~~-------------ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~ 133 (643)
... ..++.. +|+++++++.+.. ++......+++.+.. ++|+|+|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 221 233333 7899999986552 222222346666654 7999999999998643221
Q ss_pred chhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
....+.+.......+ .+++++||.++.|++++++.+.+.+.
T Consensus 163 ~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 011111222222222 25889999999999999998887653
No 299
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.63 E-value=7.4e-17 Score=167.82 Aligned_cols=97 Identities=20% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHhh
Q 006490 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQF 147 (643)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~~ 147 (643)
.+.|...+..+.+.+|++++|+|++++. ..|.+.+++...++|+++|+||+|+....... ...+.+....+..
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 4567788888999999999999998753 24777777766689999999999997543210 0112222233444
Q ss_pred cc-cceEEEeCcccCCChhHHHHHH
Q 006490 148 RE-IETCVECSATTMIQVPDVFYYA 171 (643)
Q Consensus 148 ~~-~~~~~~~Sa~~~~gi~~l~~~i 171 (643)
+. ...++.+||++|.|++++++.+
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhh
Confidence 42 1268999999999999988754
No 300
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=1.1e-15 Score=153.30 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=92.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCCcccceEEEEEEcCCCcEEEEEEecCCch-------hhh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------GVK 486 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~--------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~-------~~~ 486 (643)
..++|+|+|.+|+|||||+|+|++....... .+|++.+.....+...|....+.+|||+|.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3589999999999999999999887655443 3455555555555555555688899999962 122
Q ss_pred hhh-----ccHHhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490 487 KIL-----SNKEALA-------------SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (643)
Q Consensus 487 ~~~-----~~~~~~~-------------~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~ 548 (643)
.+. +...++. ++|++++++|.+..........++..+.. ++|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCH
Confidence 210 0022222 37899999977652211223344444432 6899999999998764
Q ss_pred cccH---HHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490 549 TMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 549 ~~~~---~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
.... +.+.+.....++. ++++||+++ |+++++++|.+.+
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcCC
Confidence 4332 2334444556776 899999999 9999999998864
No 301
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.63 E-value=1.3e-15 Score=167.28 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CC---CCCeeeCC--------------cccCCceeEEEEeCCCCCcc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PV---HAPTRLPP--------------DFYPDRVPVTIIDTSSSLEN 72 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~-~~---~~~~~~~~--------------~~~~~~~~~~i~Dt~G~~~~ 72 (643)
+..+|+|+|++|+|||||+++|++..+....+ +. .+.+.... .+......++||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45789999999999999999999866433322 11 11111110 01112235999999999999
Q ss_pred hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCcc--------------ch---
Q 006490 73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------------TS--- 135 (643)
Q Consensus 73 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~--------------~~--- 135 (643)
......+++.+|++|+|+|+++....+... .+..++.. ++|+++|+||+|+...... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e--~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~ 159 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ 159 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHH--HHHHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHHHHH
Confidence 888888899999999999999843322222 23344554 8999999999998642110 00
Q ss_pred -hhhhhhHHHHhh----------------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 136 -LEEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 136 -~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
..+.+..+...+ +...+++++||++|.|+++|++++...+.
T Consensus 160 ~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 001111111111 12237999999999999999999887653
No 302
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.63 E-value=9.3e-16 Score=162.52 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=114.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CC-------CCcccceEEEEEEcCCCcEEEEEEecCCch
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--YA-------PTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~--------~~~~~--~~-------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~ 483 (643)
+..++|+++|.+|+|||||+++|++. .+... .+ ..++.+.....+.. ....+.+|||+|++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc--CCeEEEEEECCChH
Confidence 45689999999999999999999973 11111 00 11112222223333 44677899999998
Q ss_pred hhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHH
Q 006490 484 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARV 558 (643)
Q Consensus 484 ~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~ 558 (643)
.+... +..++..+|++|+|+|++++.. .+..+++..+... ++| +++|+||+|+..... ..++..++
T Consensus 87 ~f~~~--~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 87 DYIKN--MITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp GGHHH--HHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 87665 6778899999999999998765 3455666655554 788 899999999985322 13456677
Q ss_pred HHHhCC----CCcEEeeeccC-C------------------HHHHHHHHHHHHhCCC
Q 006490 559 TQELGI----EPPIPVSMKSK-D------------------LNNVFSRIIWAAEHPH 592 (643)
Q Consensus 559 ~~~~~~----~~~~~vSa~~g-~------------------i~~l~~~l~~~~~~~~ 592 (643)
.+.+++ .+++++||++| | +.++++.+.+.+..+.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 777775 36999999999 8 7788888877665443
No 303
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.63 E-value=2.3e-15 Score=164.66 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~ 71 (643)
..+|+|+|++|+|||||+++|+... +.. ..... .+.+. ....+ +...+.++||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4579999999999999999998632 110 00000 00010 11111 23357899999999999
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-c
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-I 150 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (643)
+...+..+++.+|++|+|+|+++..+.+... .|.... .. ++|+|+|+||+|+...+ .++..+++.+.++. .
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~-~~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAV-EQ--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCCCG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH-HC--CCCEEEEEeccCccccC----HHHHHHHHHHhhCCCc
Confidence 9888889999999999999999988877765 354443 33 79999999999997642 23344555555542 1
Q ss_pred ceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 151 ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 151 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
..++++||++|.||+++++.+.+.+..+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 24899999999999999999999887654
No 304
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.63 E-value=1.3e-15 Score=167.02 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=110.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----eCCcc---cCCceeEEEEeCCCCCc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV------HAPTR----LPPDF---YPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~ 71 (643)
..+|+|+|++++|||||+++|+... +.. ..... .+.+. ....+ ++.++.++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4579999999999999999998632 111 00000 00111 11111 23458899999999999
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-c
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-I 150 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (643)
+...+..+++.+|++|+|+|+++..+.+... .|.... .. ++|+|+|+||+|+...+ .++...++.+.++. .
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~-~~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAM-EM--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHH-HC--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999887777665 355444 33 78999999999997643 33444556665542 1
Q ss_pred ceEEEeCcccCCChhHHHHHHHHHHhCCC
Q 006490 151 ETCVECSATTMIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 151 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 179 (643)
..++++||++|.||+++++.+.+.+..+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 24899999999999999999999886654
No 305
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=2.3e-15 Score=160.85 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCCCCCC-e-----------------e---eCCccc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPPVHAP-T-----------------R---LPPDFY 55 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~~~~~-~-----------------~---~~~~~~ 55 (643)
.++.++|+++|++|+|||||+++|++.. +... .+++.+. . + ....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999998764 1111 1111100 0 0 001133
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCC-cEEEEEecccCCCCCcc-
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA- 133 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-pvilv~NK~D~~~~~~~- 133 (643)
..+..+.||||||++++...+..++..+|++|+|+|+++....+.. .++..+... +. |+|+|+||+|+......
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 4567899999999999888888899999999999999887544332 355555555 44 69999999999763211
Q ss_pred -chhhhhhhHHHHhhc---ccceEEEeCcccCCChhHHHH
Q 006490 134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 134 -~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
....+.+..+.+.++ ...+++++||++|.|++++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 012233444555554 113689999999999998643
No 306
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=2e-16 Score=161.02 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=101.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CC-CC----------------------cccc-------------
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-----YA-PT----------------------TGEQ------------- 459 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-----~~-~t----------------------~~~~------------- 459 (643)
...++|+|+|.+|||||||+|+|++..+... +. |+ ++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999987522 21 32 0000
Q ss_pred -----------eEEEEEEcCCCcEEEEEEecCCch-------------hhhhhhccHHhhccCCEEE-EEEeCCChhhHH
Q 006490 460 -----------YAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASCDVTI-FVYDSSDEYSWK 514 (643)
Q Consensus 460 -----------~~~~~v~~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~ad~il-lv~D~s~~~s~~ 514 (643)
..+ .+..+ ....+.+|||+|.. .+..+ ...+++.++.++ +|+|++++.+.+
T Consensus 104 ~g~~~gi~~~~~~~-~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 104 TGTNKGISPVPINL-RVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANS 179 (299)
T ss_dssp CSSTTCCCSCCEEE-EEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGC
T ss_pred cccCCCccccceEE-EEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHH--HHHHHcCCCeEEEEEecCCcchhhh
Confidence 000 01111 12467789999953 22233 567888888776 799998865544
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHH--hCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490 515 RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQE--LGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 515 ~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~--~~~~~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
....++..+... +.|+++|+||+|+...... .+..+..... .++.+++++||++| |++++++.+.+..
T Consensus 180 ~~~~~~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 180 DALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHHHCTT------CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHhCCC------CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 433454444322 7999999999999764331 2211110001 12335889999999 9999999998843
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=147.33 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=88.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhcc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 497 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~---~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 497 (643)
...++|+|+|.+|||||||+|+|++..+... +.++++..+ ....+.+||++|.+.+... +..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCC--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHH--HHHHHHh
Confidence 4568999999999999999999999876442 223332222 2334567999998776554 4444544
Q ss_pred ----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCCCCccccHHHHHHHHH
Q 006490 498 ----CDVTIFVYDSS-DEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQ 560 (643)
Q Consensus 498 ----ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~-~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~ 560 (643)
+|++++|+|++ ++.++.....|+..+...... ...+.|+++|+||+|+.......+..+.+.+
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 99999999999 888999888888777654211 0117999999999999876555444444443
No 308
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=9.6e-16 Score=147.20 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=100.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcc----------hhhhHH
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----------KGKLNE 78 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 78 (643)
..+..+|+|+|++|||||||+|+|++..+.....++.+.+.....+...+ .+.+|||||+... ......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 45678999999999999999999998774333333333333211111112 5889999997531 122223
Q ss_pred hh---ccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEE
Q 006490 79 EL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE 155 (643)
Q Consensus 79 ~~---~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (643)
++ +.++++++|+|++.+.+.... .+..++... ++|+++|+||+|+..........+.+..+..+.+....+++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 33 578999999999887665432 234444444 78999999999986532110011233344444433346789
Q ss_pred eCcccCCChhHHHHHHHHHHh
Q 006490 156 CSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 156 ~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+||+++.|++++++.+.+.+.
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC
T ss_pred EeecCCCCHHHHHHHHHHHHh
Confidence 999999999999998887653
No 309
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=2.1e-15 Score=148.57 Aligned_cols=162 Identities=11% Similarity=0.035 Sum_probs=102.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC--cccceEEEEEEcCCCcEEEEEEecCCch--------hhhhhhc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT--TGEQYAVNVVDQPGGNKKTLILQEIPEE--------GVKKILS 490 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t--~~~~~~~~~v~~~g~~~~~~i~d~~g~~--------~~~~~~~ 490 (643)
...++|+|+|.+|||||||+|+|++........++ ++.......+... ...+.+|||+|.. .+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~-- 94 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEE-- 94 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHH--
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHH--
Confidence 45799999999999999999999998877655432 2222333334443 4667889999952 22111
Q ss_pred cHHh----hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-------HHHHHHHH
Q 006490 491 NKEA----LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------VQDSARVT 559 (643)
Q Consensus 491 ~~~~----~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-------~~~~~~~~ 559 (643)
...+ ...+|++|+|+|+++. + .....++..+.........+.|+|+++||+|+...... .+..+.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~-~-~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRF-T-AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBC-C-HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCC-C-HHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 2223 3899999999999853 2 22223333333322111115899999999999763211 13467778
Q ss_pred HHhCCCCcEEeeecc-----C-CHHHHHHHHHHHHh
Q 006490 560 QELGIEPPIPVSMKS-----K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 560 ~~~~~~~~~~vSa~~-----g-~i~~l~~~l~~~~~ 589 (643)
+..+.. ++.++++. + |+++|++.|.+.+.
T Consensus 173 ~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 173 AECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 888876 55555443 6 89999999999875
No 310
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=168.46 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=104.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------------------------------CCCCCCeeeCCcccC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--------------------------------PPVHAPTRLPPDFYP 56 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 56 (643)
.++.+||+|+|++|||||||+|+|++....... ++++ .......+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiT-id~~~~~~~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT-VSICTSHFST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTC-CSCSCCEEEC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCee-EeeeeEEEec
Confidence 456799999999999999999999976421111 1111 1112334556
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cH--HHHHHHHHHHHHhcCCCCcEEEEEecccCCCCC
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~ 131 (643)
.+..+.||||||++.+...+..+++.+|++|+|+|+++.. ++ .......+..+.... ..|+|+|+||+|+....
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-i~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-CCEEEEEEECTTTTTTC
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-CCeEEEEEecccccchh
Confidence 6789999999999999888889999999999999988642 00 011111233333331 24599999999997643
Q ss_pred ccchhh---hhhhHHHHhhcc---cceEEEeCcccCCChhHHH
Q 006490 132 NATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPDVF 168 (643)
Q Consensus 132 ~~~~~~---~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 168 (643)
.. ..+ ..+..+...++. ..++++|||++|.||.++.
T Consensus 322 ~~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 322 QQ-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HH-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HH-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 22 222 223333344432 2379999999999998753
No 311
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.62 E-value=3.1e-16 Score=163.29 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc-hhhhhhhHHHHh
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQ 146 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~-~~~~~~~~~~~~ 146 (643)
.++.|......+++.++++++|+|++++.+ .|.+.+.+...++|+++|+||+|+....... ...+.+......
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 367788888888899999999999998764 3555565555589999999999997643210 111222222334
Q ss_pred hccc-ceEEEeCcccCCChhHHHHHH
Q 006490 147 FREI-ETCVECSATTMIQVPDVFYYA 171 (643)
Q Consensus 147 ~~~~-~~~~~~Sa~~~~gi~~l~~~i 171 (643)
.+.. ..++.+||++|.|++++++.+
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHH
Confidence 4321 268999999999999988754
No 312
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.62 E-value=2.5e-15 Score=158.57 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=111.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC-----CcccceEEEEEEcCCCcEEEEEEecCCchhhhh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERP-------FSEN--YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK 487 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~-------~~~~--~~~-----t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~ 487 (643)
..++|+++|.+|+|||||+++|++.. +... .+. ..+.......+........+.+|||+|++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999999741 1100 000 000111111122222446788999999988766
Q ss_pred hhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHHHHHh
Q 006490 488 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQEL 562 (643)
Q Consensus 488 ~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~~~~~ 562 (643)
. +..++..+|++|+|+|++++...+ ..+++..+... ++| +++|+||+|+..... ..++..++.+.+
T Consensus 82 ~--~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 82 N--MITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp H--HHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred H--HHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 5 677889999999999999875533 33444444433 788 789999999985322 134666777887
Q ss_pred CC----CCcEEeeeccC-C----------HHHHHHHHHHHHhCCC
Q 006490 563 GI----EPPIPVSMKSK-D----------LNNVFSRIIWAAEHPH 592 (643)
Q Consensus 563 ~~----~~~~~vSa~~g-~----------i~~l~~~l~~~~~~~~ 592 (643)
++ .+++++||++| | +.++++.|.+.+..|.
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 75 36999999997 6 8899999988775443
No 313
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=7.6e-16 Score=162.59 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=112.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC-----CCCCee--eCCcccCCceeEEEEeCCCCCcchh
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP-----VHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG 74 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 74 (643)
+.+||+++|++|+|||||+++|++.. +... .+. ..+.+. ....+...+..+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998741 1100 000 001111 1122445678899999999988888
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc---
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE--- 149 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~--- 149 (643)
.+..+++.+|++|+|+|+++....+... ++..++.. ++| +++|+||+|+..+.... ...+.+..+.+.++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999999875544432 44555555 788 78999999997522110 122334555555542
Q ss_pred cceEEEeCcccCCC----------hhHHHHHHHHHHhCC
Q 006490 150 IETCVECSATTMIQ----------VPDVFYYAQKAVLHP 178 (643)
Q Consensus 150 ~~~~~~~Sa~~~~g----------i~~l~~~i~~~~~~~ 178 (643)
..+++++||++|.| +.+|++.+.+.+..+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 24799999999775 888998888776543
No 314
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=1.1e-15 Score=165.79 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=87.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCC---------------CCC-------CCcccceEEEEEEcCCCcEEEEEEec
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NYA-------PTTGEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~---------------~~~-------~t~~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
+..+|+|+|.+|||||||+|+|+...... ..+ +.++.......+.. ....+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence 35689999999999999999997322111 000 11111222233333 3567889999
Q ss_pred CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 006490 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT 559 (643)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~ 559 (643)
+|+..+... +..+++.+|++|+|+|++++.+.+....| ..+... ++|+++|+||+|+.... ..+..+++.
T Consensus 90 PG~~df~~~--~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~ 159 (528)
T 3tr5_A 90 PGHADFTED--TYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR------HTPIMTFINKMDRDTRP-SIELLDEIE 159 (528)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT------TCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence 999887765 78899999999999999998776654444 444443 89999999999996532 223344444
Q ss_pred HHhC
Q 006490 560 QELG 563 (643)
Q Consensus 560 ~~~~ 563 (643)
+.++
T Consensus 160 ~~l~ 163 (528)
T 3tr5_A 160 SILR 163 (528)
T ss_dssp HHHC
T ss_pred HhhC
Confidence 4443
No 315
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.61 E-value=3.4e-15 Score=158.47 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCCC-CeeeCCcc---------------c--CC----ceeEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES---VPEK-VPPVHA-PTRLPPDF---------------Y--PD----RVPVT 62 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~---~~~~-~~~~~~-~~~~~~~~---------------~--~~----~~~~~ 62 (643)
..+.++|+++|++++|||||+++|++.. +... .++.+- .......+ . .. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567899999999999999999999643 2111 121111 00000000 0 11 26799
Q ss_pred EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141 (643)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~ 141 (643)
||||||++.+.......+..+|++|+|+|+++.. ..+.. ..+..++... ..|+++|+||+|+..........+.+.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR--EHLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH--HHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHH--HHHHHHHHcC-CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999888777777788899999999998653 22211 1222333332 358999999999976421101112223
Q ss_pred HHHHhh-cccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 142 PIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 142 ~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
.+.... ....+++++||++|.|+++|++.+.+.+..+
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 333221 1224799999999999999999998876544
No 316
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.60 E-value=1.6e-15 Score=157.71 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN 93 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~ 93 (643)
+|+++|++|+|||||+++|+...... .. ....+...+..+.+|||||++++.......++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~giTi------~~--~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGTSS------DI--TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEEES------SS--EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHHhCCEEE------Ee--eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 89999999999999999998211100 01 112344566789999999999998888888999999999999 5
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCcE-EEEEe-cccCCCCCccchhhhhhhHHHHhhc-ccceEEE--eCccc---CCChh
Q 006490 94 QQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MIQVP 165 (643)
Q Consensus 94 ~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~N-K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~Sa~~---~~gi~ 165 (643)
... ..... +++..++.. ++|. |+|+| |+|+ .........+.+..+...++ ...++++ +||++ |.|++
T Consensus 94 ~g~-~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 94 QGL-DAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp TCC-CHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CCC-cHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHH
Confidence 433 33333 466666666 6787 88999 9999 42211001123333333332 1247999 99999 99999
Q ss_pred HHHHHHHHHHh
Q 006490 166 DVFYYAQKAVL 176 (643)
Q Consensus 166 ~l~~~i~~~~~ 176 (643)
++++.+.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99998887654
No 317
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=1.6e-15 Score=162.04 Aligned_cols=156 Identities=18% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCCCCCeeeCCcccCC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK------------------------------VPPVHAPTRLPPDFYPD 57 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~ 57 (643)
++.++|+++|++|+|||||+++|+.. .+... ..+++ .......+...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giT-i~~~~~~~~~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT-INLTFMRFETK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCce-eEeeEEEEecC
Confidence 46789999999999999999999875 22210 01110 11122345567
Q ss_pred ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHH------HHHHHHHhcCCCC-cEEEEEecccCCCC
Q 006490 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIKV-PIIVAGCKLDLRGD 130 (643)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~------~~~~~l~~~~~~~-pvilv~NK~D~~~~ 130 (643)
++.+.||||||++++...+..+++.+|++|+|+|+++ .+++.... +.+..+... +. |+|+|+||+|+...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCc
Confidence 7899999999999998888899999999999999988 55554321 233333333 44 69999999999763
Q ss_pred C--cc--chhhhhhhHHHHhhcc---cceEEEeCcccCCChhHHHH
Q 006490 131 H--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 131 ~--~~--~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~ 169 (643)
. .. ....+.+..+...++. ..+++++||++|.|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 11 0122334555555441 14699999999999986543
No 318
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.59 E-value=4.1e-15 Score=169.66 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=113.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC-----CCCCCee--eCCcccCCceeEEEEeCCCCCc
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVP-----PVHAPTR--LPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~-------~~~--~~~-----~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
..++.++|+++|++|+|||||+++|++.. +.. ..+ ...+.+. ....+...+..+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 45667999999999999999999998741 100 000 0111111 1223445678899999999999
Q ss_pred chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCCccc-hhhhhhhHHHHhhcc
Q 006490 72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE 149 (643)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~ 149 (643)
+...+...+..+|++|+|+|+++....+.. .++..++.. ++| +|+|+||+|+....... ...+.+..+...++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 888888899999999999999887544332 355666655 788 78999999997532110 122334555555541
Q ss_pred ---cceEEEeCcccC--------CChhHHHHHHHHHHhC
Q 006490 150 ---IETCVECSATTM--------IQVPDVFYYAQKAVLH 177 (643)
Q Consensus 150 ---~~~~~~~Sa~~~--------~gi~~l~~~i~~~~~~ 177 (643)
..+++++||++| .||.++++.+.+.+..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 247999999999 4688999988876643
No 319
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.58 E-value=3e-15 Score=160.64 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=103.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCCCCCeeeCCcccC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK------------------------------VPPVHAPTRLPPDFYP 56 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~ 56 (643)
.++.++|+++|++|+|||||+|+|++.. +... ..+.+ .......+..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~ 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFET 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEEC
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEec
Confidence 4567999999999999999999998641 2110 01100 0001123455
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCccc---HH---HHHHHHHHHHHhcCCCCc-EEEEEecccCCC
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRG 129 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~ 129 (643)
.+..+.||||||++++...+..++..+|++|+|+|+++... ++ ... .++..+... ++| +|+|+||+|+..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~~--~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFTL--GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHHc--CCCeEEEEEEcccccc
Confidence 67889999999999998888899999999999999886532 11 122 233344444 565 999999999974
Q ss_pred CCcc--chhhhhhhHHHHhhcc---cceEEEeCcccCCChhHH
Q 006490 130 DHNA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV 167 (643)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l 167 (643)
.... ....+.+..+...++. ..+++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2211 0122334444455542 147999999999999764
No 320
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=9.7e-15 Score=158.07 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~ 468 (643)
.+..+||+++|.+|+|||||+|+|++....... .+.++.+.....++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 108 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-
Confidence 345799999999999999999999865211110 011122223333444
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK------RTKELLVEVARLGEDSGYGVPCLLIASK 542 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~------~~~~~~~~i~~~~~~~~~~~pvilv~NK 542 (643)
....+.+|||+|++.+... +..++..||++|+|+|++++.++. ...+.+..+... . ..|+|+|+||
T Consensus 109 -~~~~~~iiDTPG~~~f~~~--~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~----~~~iIvviNK 180 (483)
T 3p26_A 109 -HRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G----IHNLIIAMNK 180 (483)
T ss_dssp -SSCEEEEECCCCCGGGHHH--HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T----CCCEEEEEEC
T ss_pred -CCceEEEEECCCcHHHHHH--HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C----CCcEEEEEEC
Confidence 3467889999999888776 778899999999999999875432 222222222222 1 2569999999
Q ss_pred CCCCCcccc-----HHHHHHHHHHhCCC----CcEEeeeccC-CHHH
Q 006490 543 DDLKPYTMA-----VQDSARVTQELGIE----PPIPVSMKSK-DLNN 579 (643)
Q Consensus 543 ~Dl~~~~~~-----~~~~~~~~~~~~~~----~~~~vSa~~g-~i~~ 579 (643)
+|+.+.... .+....+.+.+++. +++++||++| |+++
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999763211 33445555566652 5899999999 9874
No 321
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=5.9e-15 Score=146.82 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhHHhhc------
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------ 81 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 81 (643)
++.++|+|+|++|||||||+|+|++..+ ....+++... .....+..++..+.+|||||+.++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLR-PVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCC-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccee-eEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4679999999999999999999999884 3333332211 122344556789999999999876555444433
Q ss_pred ---cCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-C--CCcEEEEEecccCCCCC
Q 006490 82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDH 131 (643)
Q Consensus 82 ---~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~pvilv~NK~D~~~~~ 131 (643)
.+|++|+|+|++... +......|++.++... . ..|+++|+||+|+...+
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 789999999987654 4444335777776542 2 25999999999986543
No 322
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.58 E-value=4.7e-16 Score=171.47 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=84.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--eCCcccCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK----------VPP-----------------VHAPTR--LPPDFYPD 57 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~ 57 (643)
.++.++|+|+|++|+|||||+|+|+... +... ..+ ..+.|. ....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4556899999999999999999997532 1100 000 001111 22334455
Q ss_pred ceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cH--HHHHHHHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 006490 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (643)
Q Consensus 58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~ 131 (643)
+..+.||||||+.++...+...+..+|++|+|+|+++.. ++ .......+..+... ++| +|+|+||+|+....
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence 688999999999998888888899999999999998642 11 11111233344444 566 99999999987532
Q ss_pred ccchhhhhhhHHHHhh----cc---cceEEEeCcccCCChh
Q 006490 132 NATSLEEVMGPIMQQF----RE---IETCVECSATTMIQVP 165 (643)
Q Consensus 132 ~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~gi~ 165 (643)
.. ...+....+...+ +. ..+++++||++|.||.
T Consensus 332 ~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 332 ED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 22 2222233333322 21 1268999999999998
No 323
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=1.7e-14 Score=154.17 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=102.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCccc---------------------ceEEEEEEc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTTGE---------------------QYAVNVVDQ 467 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~------------~~t~~~---------------------~~~~~~v~~ 467 (643)
+..++|+++|.+|+|||||+|+|++....... .+|++. +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999876422110 112211 112223333
Q ss_pred CCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCC-cEEEEEeCCCCC
Q 006490 468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-PCLLIASKDDLK 546 (643)
Q Consensus 468 ~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-pvilv~NK~Dl~ 546 (643)
....+.+|||+|++.+... ...++..+|++|+|+|++++.. .+..+++..+... +. |+++|+||+|+.
T Consensus 102 --~~~~~~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~------~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 --AKRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL------GIKHIVVAINKMDLN 170 (434)
T ss_dssp --SSEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred --CCceEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEEcCcCC
Confidence 3457889999999888665 5678899999999999998754 3344454444433 44 699999999997
Q ss_pred Ccc-c----cHHHHHHHHHHhC--C--CCcEEeeeccC-CHHHH
Q 006490 547 PYT-M----AVQDSARVTQELG--I--EPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 547 ~~~-~----~~~~~~~~~~~~~--~--~~~~~vSa~~g-~i~~l 580 (643)
... . ..++..++.+.++ . .+++++||++| |++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 621 1 2345566667777 2 25899999999 99874
No 324
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=9.9e-15 Score=164.10 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=108.2
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCccc--------ceEEEEEEcCCC--------------------
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGE--------QYAVNVVDQPGG-------------------- 470 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~--------~~~~~~v~~~g~-------------------- 470 (643)
.+..++|+|+|.+|+|||||+|+|+|..+..+.. |+|.. .........+|.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3457999999999999999999999998776554 54421 111111110100
Q ss_pred -------------------------c--EEEEEEecCCchhhhhh-hccHHhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q 006490 471 -------------------------N--KKTLILQEIPEEGVKKI-LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVE 522 (643)
Q Consensus 471 -------------------------~--~~~~i~d~~g~~~~~~~-~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~ 522 (643)
. ..+.+|||+|....... ..+..++..||++|+|+|++++.+......|...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0 24678999996553321 1256788999999999999998776665555444
Q ss_pred HHHhcCCCCCCCcEEEEEeCCCCCCcccc-H----------HHHHH-----HHHHhC-------CCCcEEeeec------
Q 006490 523 VARLGEDSGYGVPCLLIASKDDLKPYTMA-V----------QDSAR-----VTQELG-------IEPPIPVSMK------ 573 (643)
Q Consensus 523 i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~----------~~~~~-----~~~~~~-------~~~~~~vSa~------ 573 (643)
+... +.|+++|+||+|+...... . ..+.. +....+ ..++++|||+
T Consensus 226 l~~~------~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 226 IKGR------GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp TTTS------CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHhh------CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3322 6899999999998754310 0 01111 111112 1258999999
Q ss_pred --------cC-CHHHHHHHHHHHHh
Q 006490 574 --------SK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 574 --------~g-~i~~l~~~l~~~~~ 589 (643)
+| |++++++.+.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99 99999999988764
No 325
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.57 E-value=1.7e-14 Score=161.53 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=85.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------------CCe--eeCCcccCCceeEEEEeCCCC
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----------------APT--RLPPDFYPDRVPVTIIDTSSS 69 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~i~Dt~G~ 69 (643)
...+..+|+|+|++|+|||||+++|++........+.. +.+ .....+...++.++||||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34566789999999999999999999544221111100 000 011223345788999999999
Q ss_pred CcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
.++......+++.+|++++|+|+++....... .++..+... ++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 99888888999999999999998877654443 466666665 79999999999987
No 326
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=1e-14 Score=149.48 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=98.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CC---CCeeeC-------------------------------
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----VH---APTRLP------------------------------- 51 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~----~~---~~~~~~------------------------------- 51 (643)
....+|+|+|++|||||||+|+|++..+.+...+ .. ..++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4457899999999999999999999886322110 00 011100
Q ss_pred -------C---------------cccCCceeEEEEeCCCCCc-------------chhhhHHhhccCCEEEEEEECCCcc
Q 006490 52 -------P---------------DFYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQS 96 (643)
Q Consensus 52 -------~---------------~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il~v~d~~~~~ 96 (643)
. .....+..+.+|||||+.. +......+++.+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 0122446799999999864 3344557889999999999974332
Q ss_pred -cHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ceEEE---eCccc---CCChhHHH
Q 006490 97 -TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVE---CSATT---MIQVPDVF 168 (643)
Q Consensus 97 -s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~Sa~~---~~gi~~l~ 168 (643)
...... .+...+... ++|+++|+||+|+...... ..+ .+...+... ..+++ +|+.+ +.|+.+++
T Consensus 182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~~~---~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--AME---VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--CHH---HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--HHH---HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 111111 355555544 7999999999998764331 111 111111111 13444 55556 79999999
Q ss_pred HHHHHHHhC
Q 006490 169 YYAQKAVLH 177 (643)
Q Consensus 169 ~~i~~~~~~ 177 (643)
+.+...+..
T Consensus 254 ~~~~~~~~~ 262 (315)
T 1jwy_B 254 KSEILYFKN 262 (315)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 988887754
No 327
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=1.4e-15 Score=170.84 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------CCCC---CCCCee--eCCcccCCceeEEEEeCCCCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPE-----------KVPP---VHAPTR--LPPDFYPDRVPVTIIDTSSSL 70 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~--~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 70 (643)
..+..+|+|+|++|+|||||+|+|+.. .+.. ++.. ..+.+. ....+...++.++||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 345678999999999999999999852 2210 0000 000111 112234457889999999999
Q ss_pred cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-
Q 006490 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE- 149 (643)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~- 149 (643)
++...+..+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+.... ....++.+...++.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQAN 158 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCCC
Confidence 99888899999999999999999887776654 44456655 89999999999997642 33445555555543
Q ss_pred -cceEEEeCcccCCChhHHHHHHHHHHhCCC-C--CCCc-ccc-ccchHHH----HHHHHhhhhhcCCC-----CCCCCC
Q 006490 150 -IETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFD-HDE-QTLKPRC----VRALKRIFIICDHD-----MDGALN 214 (643)
Q Consensus 150 -~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~-~--~~~~-~~~-~~~~~~~----~~~l~~~~~~~~~~-----~~~~l~ 214 (643)
....+++|+ +.|+..+++.+........ . ..+. ... ....... .+.++.+....+.. .+..+.
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~ 236 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEIS 236 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCC
T ss_pred ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Confidence 123678888 6666666554332211111 0 0000 000 0011111 11122111111100 123456
Q ss_pred hHHHHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 215 DAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 215 ~~el~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
.+++..... -.++.++...+++.+++.+.++.|+|.+.
T Consensus 237 ~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~ 284 (693)
T 2xex_A 237 VSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDV 284 (693)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGS
T ss_pred HHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhc
Confidence 666543322 15788899999999999999999998764
No 328
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.6e-15 Score=162.79 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=102.1
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-------------------------------~t~~~~~~~~~v~~~ 468 (643)
.+..++|+|+|.+|+|||||+|+|++........ +.++.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3457899999999999999999999875433221 111222223334443
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCCC-CcEEEEEe
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYG-VPCLLIAS 541 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s---~---~~~~~~~~~i~~~~~~~~~~-~pvilv~N 541 (643)
...+.+|||+|++.+... +..++..||++|+|+|++++.. | .+....+..+... + .|+|+|+|
T Consensus 244 --~~~~~iiDTPG~e~f~~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l------gi~~iIVVvN 313 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN 313 (611)
T ss_dssp --SCEEEEEECCSSSCHHHH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT------TCCEEEEEEE
T ss_pred --CceEEEEECCCCcccHHH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc------CCCeEEEEEe
Confidence 457788999999887765 6778899999999999997521 0 1222222222222 4 45999999
Q ss_pred CCCCCCccc-----cHHHHHHHHHHhCC----CCcEEeeeccC-CHHHH
Q 006490 542 KDDLKPYTM-----AVQDSARVTQELGI----EPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 542 K~Dl~~~~~-----~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l 580 (643)
|+|+..... ..+....+...+++ .++++|||++| |+.++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999986221 13455556666665 25899999999 99865
No 329
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=1.4e-14 Score=162.93 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=108.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeee--------CCcc------------------cCCc---
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRL--------PPDF------------------YPDR--- 58 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~--------~~~~------------------~~~~--- 58 (643)
++.++|+|+|++|||||||+|+|++..+.+. .|++...+.+ ...+ ...+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3578999999999999999999999875332 3333111110 0000 0000
Q ss_pred ---------------------------eeEEEEeCCCCCcc---hhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHH
Q 006490 59 ---------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108 (643)
Q Consensus 59 ---------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~ 108 (643)
..+.||||||+... ...+..+++.+|++|+|+|++++.+..+.. .|.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 46999999997642 344557889999999999999887777665 36555
Q ss_pred HHhcCCCCcEEEEEecccCCCCCccchhh---h------hhh-H----HHHhhc------ccceEEEeCcc---------
Q 006490 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLE---E------VMG-P----IMQQFR------EIETCVECSAT--------- 159 (643)
Q Consensus 109 l~~~~~~~pvilv~NK~D~~~~~~~~~~~---~------~~~-~----~~~~~~------~~~~~~~~Sa~--------- 159 (643)
+... +.|+++|+||+|+...... ..+ + .+. . +....+ ...++++|||+
T Consensus 226 l~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 5544 7899999999998643211 000 0 011 1 111111 11258999999
Q ss_pred -----cCCChhHHHHHHHHHHh
Q 006490 160 -----TMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 160 -----~~~gi~~l~~~i~~~~~ 176 (643)
+|.|++++++.+.+.+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 330
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.56 E-value=2.2e-14 Score=161.14 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCCCCCCCCCCccEEEEEcCCCCCHHHHHHHHhcCC--CCC--C-CCC-----------CCCCee--eCCcccCCceeEE
Q 006490 1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATES--VPE--K-VPP-----------VHAPTR--LPPDFYPDRVPVT 62 (643)
Q Consensus 1 m~~~~~~~~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~--~-~~~-----------~~~~~~--~~~~~~~~~~~~~ 62 (643)
|+........+..+|+|+|++|+|||||+++|+... +.. . ..+ ..+.+. ....+...++.++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 443333334556899999999999999999998421 100 0 000 000111 1122334578999
Q ss_pred EEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 63 i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
||||||+.++...+..+++.+|++|+|+|+++..+.+... .|. .+... ++|+++|+||+|+...
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccC
Confidence 9999999999888999999999999999999988777654 243 45555 8999999999998754
No 331
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.55 E-value=3.3e-14 Score=154.51 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CC---------CCCCee--eCCcccCCceeEEEEeCC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PP---------VHAPTR--LPPDFYPDRVPVTIIDTS 67 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~-----------~~---------~~~~~~--~~~~~~~~~~~~~i~Dt~ 67 (643)
.+..+|+|+|++|+|||||+++|+........ .. ..+.+. ....+...++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 34579999999999999999999964211100 00 000000 112244567899999999
Q ss_pred CCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 68 G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
|+.++...+..+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 999988888899999999999999988754333 2355555544 8999999999998754
No 332
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.55 E-value=6.8e-15 Score=150.75 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=94.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccc----eE-----------------------------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQ----YA----------------------------------- 461 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~----~~----------------------------------- 461 (643)
..++|+|+|.+|||||||+|+|++..+..... .++..- ..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45799999999999999999999988632211 111100 00
Q ss_pred -------------------EEEEEcCCCcEEEEEEecCCchh-------------hhhhhccHHhhccCCEEEEEEeCCC
Q 006490 462 -------------------VNVVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEALASCDVTIFVYDSSD 509 (643)
Q Consensus 462 -------------------~~~v~~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~ad~illv~D~s~ 509 (643)
...+..+ ....+.+|||+|... +... +..++..+|++++|+|+++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHH--HHHHHcCCCeEEEEEEecC
Confidence 0001122 234577899999643 2222 6778899999999999743
Q ss_pred -hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc-cHHHHHHHHHH--hCCCCcEEeeecc---C-CHHHHH
Q 006490 510 -EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQE--LGIEPPIPVSMKS---K-DLNNVF 581 (643)
Q Consensus 510 -~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~vSa~~---g-~i~~l~ 581 (643)
.........+...+... +.|+++|+||+|+..... ..+..+..... .++.++..+||++ + |+.+++
T Consensus 180 ~~~~~~~~~~i~~~~~~~------~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDPE------GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp SCSTTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred cchhhhHHHHHHHHhCCC------CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 32111112233333221 799999999999986443 12221110001 1222345556666 7 899999
Q ss_pred HHHHHHHhC
Q 006490 582 SRIIWAAEH 590 (643)
Q Consensus 582 ~~l~~~~~~ 590 (643)
+.+.+.+..
T Consensus 254 ~~~~~~~~~ 262 (315)
T 1jwy_B 254 KSEILYFKN 262 (315)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999988754
No 333
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.55 E-value=2.6e-14 Score=160.80 Aligned_cols=236 Identities=11% Similarity=0.069 Sum_probs=134.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--CCCC---CCC-----------CCCCee--eCCcccCC-------ceeEEE
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK---VPP-----------VHAPTR--LPPDFYPD-------RVPVTI 63 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~---~~~-----------~~~~~~--~~~~~~~~-------~~~~~i 63 (643)
..+..+|+|+|++|+|||||+++|+... +... .++ ..+.+. ....+... .+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456789999999999999999997532 1110 000 000111 11112222 388999
Q ss_pred EeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHH
Q 006490 64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI 143 (643)
Q Consensus 64 ~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~ 143 (643)
|||||+.++...+..+++.+|++|+|+|+++....+... ++..+... ++|+++|+||+|+...+ ..+.++.+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~l 158 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQI 158 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHHH
Confidence 999999999888999999999999999999876655443 34445544 79999999999987642 34555666
Q ss_pred HHhhcccceEEEeCcccCCChhHHHHHHHHHHh-CCC---CCCCc-----ccccc-chHHHHHHHHhhhhhcCCC-----
Q 006490 144 MQQFREIETCVECSATTMIQVPDVFYYAQKAVL-HPT---APLFD-----HDEQT-LKPRCVRALKRIFIICDHD----- 208 (643)
Q Consensus 144 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~-~~~---~~~~~-----~~~~~-~~~~~~~~l~~~~~~~~~~----- 208 (643)
...++.....+.+....+.++..+++.+..... +.. ...+. ..... ......+.++.+....+..
T Consensus 159 ~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l 238 (704)
T 2rdo_7 159 KTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYL 238 (704)
T ss_pred HHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 666654221222222222222222222222211 111 00000 00000 0011112222222211111
Q ss_pred CCCCCChHHHHHHhh----------hhcCCCCCHHHHHHHHHHHHhhccCCcCC
Q 006490 209 MDGALNDAELNEFQV----------KCFNAPLQPAEIVGVKRVVQEKQHDGVND 252 (643)
Q Consensus 209 ~~~~l~~~el~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (643)
....+..+++..... -.++.++...+++.+++.+..+.|+|.+.
T Consensus 239 ~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~ 292 (704)
T 2rdo_7 239 GGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDV 292 (704)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhc
Confidence 123456666543332 24778889999999999999999998764
No 334
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=1.1e-14 Score=145.48 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=83.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchhhhH-------H--
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------E-- 78 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~-- 78 (643)
...++|+++|.+|||||||+|+|++..+. ...+++... .....+...+..+.+|||||+.++..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45789999999999999999999998753 223332211 12233455678899999999876543222 1
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcC-CC--CcEEEEEecccCCCCC
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IK--VPIIVAGCKLDLRGDH 131 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~pvilv~NK~D~~~~~ 131 (643)
..+.+|++|+|+|++.. ++......|+..+.... .+ +|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13479999999998764 34444445888776542 22 6999999999987543
No 335
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=158.24 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC--------CCCCCeeeCCccc--CCceeEEEEeCCCC-------Ccch
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATES-VPEKVP--------PVHAPTRLPPDFY--PDRVPVTIIDTSSS-------LENK 73 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~-~~~~~~--------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~-------~~~~ 73 (643)
.++|+|+|++|||||||+|+|++.. +..... ++.+.......+. .....+.+|||||+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 4789999999999999999987765 322211 1111111111222 22457999999999 4444
Q ss_pred hhhH-------HhhccCCEE-----------EEEEECCC-cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccc
Q 006490 74 GKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT 134 (643)
Q Consensus 74 ~~~~-------~~~~~ad~i-----------l~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~ 134 (643)
.... .+++.++++ ++||++++ ..++..+...|++.+ ..++|+|+|+||+|+.......
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 4444 555544332 24444444 455666554465554 3579999999999997643321
Q ss_pred hhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
...+.+..+...++ .+++++||++|.| ++.|..+.+.+.
T Consensus 194 ~~k~~i~~~~~~~~--i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 194 RLKKRILDEIEEHN--IKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHTTCC---CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 11123344444443 3689999999998 777777777664
No 336
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.54 E-value=1.3e-14 Score=159.33 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=101.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcC----------C------CcEEEEEEecCCchhh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------G------GNKKTLILQEIPEEGV 485 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~----------g------~~~~~~i~d~~g~~~~ 485 (643)
+.++|+|+|.+|+|||||+++|++..+.......++.......+... + ....+.+|||+|++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 35689999999999999999999865433221111111111122110 0 1125788999999888
Q ss_pred hhhhccHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc------------
Q 006490 486 KKILSNKEALASCDVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------ 550 (643)
Q Consensus 486 ~~~~~~~~~~~~ad~illv~D~s~---~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~------------ 550 (643)
..+ ...++..||++|+|+|+++ +.+++.+ ..+... ++|+++|+||+|+.....
T Consensus 84 ~~~--~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~~------~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 84 TTL--RKRGGALADLAILIVDINEGFKPQTQEAL----NILRMY------RTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp TTS--BCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHHT------TCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHH--HHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHHc------CCeEEEEecccccccccccccCCchHHHHH
Confidence 776 5667899999999999999 4444332 223333 899999999999964210
Q ss_pred --c-------HHHHHHHH---HHhCC--------------CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 551 --A-------VQDSARVT---QELGI--------------EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 551 --~-------~~~~~~~~---~~~~~--------------~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
. .+...++. ...++ .+++++||++| |+++++++|...+.
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 01111111 22222 16899999999 99999999998764
No 337
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=3e-14 Score=136.71 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=97.3
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----------hhhhh
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKKIL 489 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----------~~~~~ 489 (643)
.....+|+|+|++|||||||+|+|++..+.....|+.+.......+...+ ...+||++|... +...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~- 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA- 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH-
Confidence 34568999999999999999999999874333334433322223333332 345789999632 1211
Q ss_pred ccHHhh---ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhC
Q 006490 490 SNKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG 563 (643)
Q Consensus 490 ~~~~~~---~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 563 (643)
...++ ..+|++++|+|++++.++.. ......+... ++|+++|+||+|+....+. ...+..++...+
T Consensus 99 -~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 99 -LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp -HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred -HHHHHHhhhcccEEEEEEECCCCCchhH-HHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 11222 57899999999998765432 1222222222 7899999999998764322 234444444444
Q ss_pred C-CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 564 I-EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 564 ~-~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
. ..++++||+++ |++++++.|.+...
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 2 24789999999 99999999998764
No 338
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.54 E-value=2.1e-14 Score=163.90 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=109.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC-----CCcccceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSE--NYA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~-------~~~--~~~-----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~ 486 (643)
...++|+++|.+|+|||||+++|++.. +.. ..+ .+.+.+.....+...+....+.+|||+|++.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998741 000 000 111111111112222245678899999999887
Q ss_pred hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCCCCccc----cHHHHHHHHHH
Q 006490 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTM----AVQDSARVTQE 561 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK~Dl~~~~~----~~~~~~~~~~~ 561 (643)
.. +...+..+|++|+|+|++++... +..+++..+... ++| +|+|+||+|+..... ..++..++.+.
T Consensus 374 ~~--mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 374 KN--MITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HH--HHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 65 67788999999999999987543 344555555444 788 789999999986322 13456677777
Q ss_pred hCC----CCcEEeeeccC-C--------HHHHHHHHHHHHh
Q 006490 562 LGI----EPPIPVSMKSK-D--------LNNVFSRIIWAAE 589 (643)
Q Consensus 562 ~~~----~~~~~vSa~~g-~--------i~~l~~~l~~~~~ 589 (643)
+++ .+++++||++| + +.++++.|.+.+.
T Consensus 445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 775 36999999998 3 7888888877654
No 339
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=1.7e-14 Score=153.97 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=101.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC--CCCCCC-----------------------------CCCcccceEEEEEEcCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPG 469 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~v~~~g 469 (643)
+..++|+++|.+|+|||||+++|++. .+...+ ...++.+.....++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 34689999999999999999999864 221100 111122222223444
Q ss_pred CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHH-------HHHHHHHHhcCCCCCCC-cEEEEEe
Q 006490 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTK-------ELLVEVARLGEDSGYGV-PCLLIAS 541 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~-------~~~~~i~~~~~~~~~~~-pvilv~N 541 (643)
....+.+|||+|++.+... +..++..+|++|+|+|+++ .+|+... +.+..+... +. |+++|+|
T Consensus 82 ~~~~~~iiDtpG~~~f~~~--~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivviN 152 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM------GLDQLIVAVN 152 (435)
T ss_dssp SSCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT------TCTTCEEEEE
T ss_pred CCeEEEEEECCCcHHHHHH--HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc------CCCeEEEEEE
Confidence 3457889999999988776 6778999999999999998 5666433 222222222 44 6999999
Q ss_pred CCCCCCcc-------ccHHHHHHHHHHhCC----CCcEEeeeccC-CHHHHH
Q 006490 542 KDDLKPYT-------MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 542 K~Dl~~~~-------~~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l~ 581 (643)
|+|+.... ...+++.++++.+++ .+++++||++| |+.+++
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 99997621 124567777777775 35899999999 997544
No 340
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.54 E-value=6.6e-15 Score=158.36 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=90.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--CC------------------------CCCCC---CCCCee--eCCcccCCc
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATES--VP------------------------EKVPP---VHAPTR--LPPDFYPDR 58 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~--~~------------------------~~~~~---~~~~~~--~~~~~~~~~ 58 (643)
++.++|+++|++++|||||+++|+... +. .+... ..+.|. ....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997522 11 00000 001111 112344567
Q ss_pred eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcc---cHH---HHHHHHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 006490 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131 (643)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-vilv~NK~D~~~~~ 131 (643)
..+.||||||+++|...+...+..+|++|+|+|+++.. +++ ... ..+..+... ++| +|+|+||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~-e~l~~~~~~--~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH-HHHHHHHHc--CCCEEEEEEECccCCCcc
Confidence 88999999999999888888899999999999998762 221 111 122233333 677 99999999996421
Q ss_pred --cc--chhhhhhhHHHHhh-cc----cceEEEeCcccCCChhHHH
Q 006490 132 --NA--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVF 168 (643)
Q Consensus 132 --~~--~~~~~~~~~~~~~~-~~----~~~~~~~Sa~~~~gi~~l~ 168 (643)
.. ....+.+..+...+ +. ..+++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 10 01122334444444 21 1368999999999998766
No 341
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.1e-15 Score=155.38 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=81.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC--------CCcccceEEEEEEcCCCcEEEEEEecCCc-------hh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG 484 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~-~~--------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-------~~ 484 (643)
...++|+|+|++|+|||||+|+|++...... +. +|.+.......+...|....+.+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3458999999999999999999887543322 11 23222222222333333456789999998 44
Q ss_pred hhhhhc-----cHHhhccC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 006490 485 VKKILS-----NKEALASC-------------DVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDL 545 (643)
Q Consensus 485 ~~~~~~-----~~~~~~~a-------------d~illv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~~~pvilv~NK~Dl 545 (643)
+..+.. ...+++.+ |+++++++.+ ..++.... .++..+ .. ++|+|+|+||+|+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l---~~----~~piIlV~NK~Dl 186 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI---HN----KVNIVPVIAKADT 186 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT---CS-----SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh---cc----CCCEEEEEECCCC
Confidence 444311 01344333 3455555542 23334333 343333 11 7999999999999
Q ss_pred CCccccH---HHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 546 KPYTMAV---QDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 546 ~~~~~~~---~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
....... +.+..+++..+++ ++++||++| | ++.|..+.+.+.
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHH
Confidence 8755442 3555666666775 999999999 8 777777776653
No 342
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=4.1e-16 Score=166.91 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=103.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEE
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 501 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~i 501 (643)
+..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++ ..+.+|||+|++.+..+ +...+..+|++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~--~~~~~~~aD~a 78 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSM--RARGAQATDIV 78 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTS--BCSSSBSCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHH--HHHHHhhCCEE
Confidence 456899999999999999999998655433333222222222334443 35678999999988776 56778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc--ccHHHH---HHHHHHhC-CCCcEEeeeccC
Q 006490 502 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDS---ARVTQELG-IEPPIPVSMKSK 575 (643)
Q Consensus 502 llv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~--~~~~~~---~~~~~~~~-~~~~~~vSa~~g 575 (643)
++|+|++++...+ ..+.+..+... +.|+++++||+|+.... ...... ..+.+.++ ..+++++||++|
T Consensus 79 ILVVda~~g~~~q-T~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 79 VLVVAADDGVMPQ-TIEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEEETTTBSCTT-THHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEEeecccCccHH-HHHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 9999999853322 12223333333 79999999999997521 111110 00111222 125899999999
Q ss_pred -CHHHHHHHHHHHH
Q 006490 576 -DLNNVFSRIIWAA 588 (643)
Q Consensus 576 -~i~~l~~~l~~~~ 588 (643)
|++++++.+....
T Consensus 152 ~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 152 TGIDELLDAILLQA 165 (501)
T ss_dssp TTCTTHHHHTTTTC
T ss_pred cCcchhhhhhhhhh
Confidence 9999999987643
No 343
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.53 E-value=2.4e-14 Score=153.62 Aligned_cols=149 Identities=14% Similarity=0.190 Sum_probs=101.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------------CC-------CCCcccceEEEEEEcCCC
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLER--PFSE----------------------NY-------APTTGEQYAVNVVDQPGG 470 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~--~~~~----------------------~~-------~~t~~~~~~~~~v~~~g~ 470 (643)
..++|+++|.+|+|||||+|+|++. .+.. .. ...++.+.....++..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~-- 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-- 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS--
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC--
Confidence 4689999999999999999999864 1110 00 0111112222334443
Q ss_pred cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEeCC
Q 006490 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIASKD 543 (643)
Q Consensus 471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-vilv~NK~ 543 (643)
...+.+|||+|++.+... +..++..+|++|+|+|++++. +|+ +..+.+..+... ++| +|+|+||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHH--HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEcc
Confidence 467889999999888765 678889999999999999863 221 333333333332 665 99999999
Q ss_pred CCCC--cc---ccHHHHHHHHHHhCC----CCcEEeeeccC-CHHHH
Q 006490 544 DLKP--YT---MAVQDSARVTQELGI----EPPIPVSMKSK-DLNNV 580 (643)
Q Consensus 544 Dl~~--~~---~~~~~~~~~~~~~~~----~~~~~vSa~~g-~i~~l 580 (643)
|+.. .. ...++..++.+.+++ .+++++||++| |+.++
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9973 11 124456667777775 36999999999 98643
No 344
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.52 E-value=4.4e-14 Score=146.91 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEE
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv 504 (643)
+|+++|.+|+|||||+++|+. ...|.. .....+.+. ...+.+|||+|++.+... ....+..+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~--~~~~~~~~~--~~~i~iiDtPGh~~f~~~--~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSD--ITMYNNDKE--GRNMVFVDAHSYPKTLKS--LITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESS--SEEEEECSS--SSEEEEEECTTTTTCHHH--HHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEE--eeEEEEecC--CeEEEEEECCChHHHHHH--HHHHHHHCCEEEEE
Confidence 899999999999999999991 112332 233344444 345888999999887554 56778999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCCCCccccH---HHHHHHHHHhCC--CCcEE--eeecc-
Q 006490 505 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS-KDDLKPYTMAV---QDSARVTQELGI--EPPIP--VSMKS- 574 (643)
Q Consensus 505 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv-ilv~N-K~Dl~~~~~~~---~~~~~~~~~~~~--~~~~~--vSa~~- 574 (643)
+| +++. +.+..+++..+... ++|. ++++| |+|+ +..... ++++++.+.+++ .++++ +||++
T Consensus 91 vd-~~g~-~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 91 IP-PQGL-DAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK 161 (370)
T ss_dssp EC-TTCC-CHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred Ec-CCCC-cHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence 99 6543 35556666655554 7787 89999 9999 533222 334444444442 35899 99999
Q ss_pred --C-CHHHHHHHHHHHHh
Q 006490 575 --K-DLNNVFSRIIWAAE 589 (643)
Q Consensus 575 --g-~i~~l~~~l~~~~~ 589 (643)
| |++++++.|.+.+.
T Consensus 162 ~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 162 NPFEGVDELKARINEVAE 179 (370)
T ss_dssp STTTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhcc
Confidence 9 99999999998765
No 345
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.52 E-value=3.4e-14 Score=148.15 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=99.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe----------------e-eC-----------------------
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT----------------R-LP----------------------- 51 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~----------------~-~~----------------------- 51 (643)
-.+|+|+|++|||||||+|+|++..+.+...+..+.. . ..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999987643322211100 0 00
Q ss_pred --------------Cc-ccCCceeEEEEeCCCCCcc-------------hhhhHHhhccCCEEEEEEECCCcccHHHHHH
Q 006490 52 --------------PD-FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLSS 103 (643)
Q Consensus 52 --------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~ 103 (643)
.. .......+.+|||||+..+ ......+++++|++|+|+|..+......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--- 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---
Confidence 00 0122456899999998875 4556688999999999998765443322
Q ss_pred HHHHHHHhcC-CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHH
Q 006490 104 YWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170 (643)
Q Consensus 104 ~~~~~l~~~~-~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 170 (643)
.|...++... .+.|+|+|+||+|+...... . .+.++.....++ .+++++|++.+.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence 2444554433 37899999999999765433 1 121222222232 36899999999988876554
No 346
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.50 E-value=4.1e-14 Score=147.01 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=94.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--Ce-----------------------eeC--------------
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PT-----------------------RLP-------------- 51 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~--~~-----------------------~~~-------------- 51 (643)
...+|+|+|++|||||||+|+|++..+.+...+... .+ +..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999886432211100 00 000
Q ss_pred ---Cc----------ccCCceeEEEEeCCCCCc-------------chhhhHHhhccCC-EEEEEEECCCcccHHHHHHH
Q 006490 52 ---PD----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRAD-AVVLTYACNQQSTLSRLSSY 104 (643)
Q Consensus 52 ---~~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad-~il~v~d~~~~~s~~~~~~~ 104 (643)
.. .......+.||||||+.. +..+...++..++ ++++|+|++......... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 00 011246799999999743 2234446676655 555566655432222211 2
Q ss_pred HHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhH--HHHhhcccceEEEeCcccCCChhHHHHHHHH
Q 006490 105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP--IMQQFREIETCVECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 105 ~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 173 (643)
+++.+... +.|+++|+||+|+...... ....++. +....+ ..+++++||++|.|++++++.+.+
T Consensus 189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~-~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTC-EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCC-ceEEEeCCcccccccccHHHHHHH
Confidence 44444433 7899999999999754331 1111110 001111 225788999999999999998876
No 347
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.49 E-value=1.4e-13 Score=154.05 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=87.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCc----------------ccceEEEEEEcCCCcEEEEEEecCCchh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEG 484 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~----------------~~~~~~~~v~~~g~~~~~~i~d~~g~~~ 484 (643)
....+|+|+|++|+|||||+++|++.........+. +..+......+......+.+|||+|++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 345789999999999999999999543321111000 1111111222222456788999999988
Q ss_pred hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC
Q 006490 485 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 563 (643)
Q Consensus 485 ~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 563 (643)
+... ...+++.+|++++|+|++++...+ ...++..+... ++|+++|+||+|+. . ...+..+++.+.++
T Consensus 87 f~~~--~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~------~ip~ilv~NKiD~~-~-~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVGE--IRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL------GLPRMVVVTKLDKG-G-DYYALLEDLRSTLG 154 (665)
T ss_dssp GHHH--HHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT------TCCEEEEEECGGGC-C-CHHHHHHHHHHHHC
T ss_pred hHHH--HHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc------cCCEEEEecCCchh-h-hHHHHHHHHHHHhC
Confidence 7665 678899999999999999876533 34555555544 89999999999987 2 23344445554443
No 348
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.49 E-value=8e-14 Score=141.60 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=92.0
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~N 123 (643)
.+++.+.+|||+|++.+...+..++++++++|||||++ +..++++... |+..+... ..+.|++|++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence 45788999999999999999999999999999999998 6788888775 55555332 35899999999
Q ss_pred cccCCCCC---------------ccchhhhhhhHHHHhh------c------------------ccceEEEeCcccCCCh
Q 006490 124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV 164 (643)
Q Consensus 124 K~D~~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~Sa~~~~gi 164 (643)
|+|+...+ .. ..+++...+..++ . ....++++||+++.||
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 99975421 11 2445555566666 0 1135789999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
..+|..+.+.++
T Consensus 316 ~~vF~~v~~~Il 327 (340)
T 4fid_A 316 KRVFMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 349
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=6.1e-15 Score=162.60 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=87.9
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~ 468 (643)
.+..++|+|+|.+|+|||||+|+|++....... .++++.+.....+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999753211110 1122222223333333
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SW---KRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~---~~~~~~~~~i~~~~~~~~~~~p-vilv~N 541 (643)
...+.+|||+|++.+... +...+..||++|+|+|++++. .+ .+....+..+... ++| +|+|+|
T Consensus 254 --~~~i~iiDTPGh~~f~~~--~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviN 323 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISG--MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVN 323 (592)
T ss_dssp -------CCEEESSSEEEEE--CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEE
T ss_pred --CeEEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEe
Confidence 356778999999887665 667889999999999998642 11 1122223333333 676 999999
Q ss_pred CCCCCCc--ccc---HHHHHHHH-HHhCCC----CcEEeeeccC-CHH--------------HHHHHHHHH
Q 006490 542 KDDLKPY--TMA---VQDSARVT-QELGIE----PPIPVSMKSK-DLN--------------NVFSRIIWA 587 (643)
Q Consensus 542 K~Dl~~~--~~~---~~~~~~~~-~~~~~~----~~~~vSa~~g-~i~--------------~l~~~l~~~ 587 (643)
|+|+... ... ...+..+. +.+++. +++++||++| |+. .|++.|...
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 9999752 111 22333333 444663 5899999999 997 677777654
No 350
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=1.4e-13 Score=149.57 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=77.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------CCc------------ccceEEEEEEcCCCcEEEEEEec
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA----------PTT------------GEQYAVNVVDQPGGNKKTLILQE 479 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~----------~t~------------~~~~~~~~v~~~g~~~~~~i~d~ 479 (643)
+..+|+|+|.+|+|||||+++|++........ .+. +.......+.. ....+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEEC
Confidence 45799999999999999999999642111000 000 01111122332 3467889999
Q ss_pred CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
+|++.+... +..++..+|++|+|+|++++...+ ...++..+... ++|+++|+||+|+..
T Consensus 90 PG~~df~~~--~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~------~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSED--TYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLR------DTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTT------TCCEEEEEECTTSCC
T ss_pred CCChhHHHH--HHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHc------CCCEEEEEcCcCCcc
Confidence 999877655 677899999999999999875422 33333333322 899999999999975
No 351
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=2.4e-13 Score=142.57 Aligned_cols=162 Identities=22% Similarity=0.161 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhh-hccHHhhccC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKI-LSNKEALASC 498 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~-~~~~~~~~~a 498 (643)
-.|+|+|++|||||||+++|++........+.++.....-.+..+ ....+.++|++|... ...+ ......+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999875433333322222334445555 345677899999632 1111 0123345689
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-C
Q 006490 499 DVTIFVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-D 576 (643)
Q Consensus 499 d~illv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~ 576 (643)
+++++|+|++ ...+..+..+..++..+.. .. ..|.++|+||+|+... ...+......+..+.. ++++||+++ |
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~--~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~g~g 311 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL--RRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALTGAG 311 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH--HSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTTCTT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh--cCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCCccC
Confidence 9999999998 4456666666666554421 01 5799999999999864 3333334444445555 999999999 9
Q ss_pred HHHHHHHHHHHHhCC
Q 006490 577 LNNVFSRIIWAAEHP 591 (643)
Q Consensus 577 i~~l~~~l~~~~~~~ 591 (643)
++++++.|.+.+...
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988643
No 352
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.48 E-value=4.2e-14 Score=152.07 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=90.6
Q ss_pred cCceEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCC-------CCcccceEEEEEEcC
Q 006490 420 ERNVFRCLLFGPQNAGKSALLNSFLERP--FS----------------------ENYA-------PTTGEQYAVNVVDQP 468 (643)
Q Consensus 420 ~~~~~ki~ivG~~nvGKSSLln~l~~~~--~~----------------------~~~~-------~t~~~~~~~~~v~~~ 468 (643)
.+..++|+++|.+|+|||||+++|+... +. ...+ ..++.+.....+.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3556899999999999999999997521 10 0000 011111112234444
Q ss_pred CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490 469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVP-CLLIAS 541 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-vilv~N 541 (643)
...+.+|||+|++.+... +...+..+|++|+|+|++++. +|+ +..+.+..+... ++| +|+|+|
T Consensus 120 --~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp~iivviN 189 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVIN 189 (467)
T ss_dssp --SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEE
T ss_pred --CeEEEEEECCCcHHHHHH--HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCCEEEEEEE
Confidence 367889999999888665 677889999999999999873 222 122222222222 777 999999
Q ss_pred CCCCCCcc-------ccHHHHHHHHHHh-CCC-----CcEEeeeccC-CHHHHH
Q 006490 542 KDDLKPYT-------MAVQDSARVTQEL-GIE-----PPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 542 K~Dl~~~~-------~~~~~~~~~~~~~-~~~-----~~~~vSa~~g-~i~~l~ 581 (643)
|+|+.... ...++...+.+.+ ++. +++++||++| |+.+++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99996421 1134566666666 543 4899999999 998755
No 353
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.47 E-value=1.4e-13 Score=139.34 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=88.8
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 124 (643)
+++.+.+|||+|++.+...+..++++++++|||||++ +..++++... |+..+... ..+.|++|++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence 5678899999999999999999999999999999665 6677777664 55555432 358999999999
Q ss_pred ccCCCCC----------------ccchhhhhhhHHHHhhcc-------cceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490 125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 125 ~D~~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
+|+...+ .. +.+++...+..+|.. ...++++||+++.||.++|..+.+.++.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 9975422 12 334444444433321 1247899999999999999999888764
No 354
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.46 E-value=2.2e-13 Score=137.90 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=90.6
Q ss_pred CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 006490 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv 539 (643)
+..++.+||++|++.+.++ +..++++++++|+|+|++ +..+++....|+..+....... +.|++++
T Consensus 165 ~~v~l~iwDtgGQe~~R~~--w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~--~~~iiL~ 240 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRK--WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILF 240 (327)
T ss_dssp TTEEEEEEEECCSHHHHTT--GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT--TCEEEEE
T ss_pred eceeeEEEEcCCchhHHHH--HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC--CceEEEE
Confidence 3467889999999999988 899999999999999665 6677888888888876543323 7999999
Q ss_pred EeCCCCCCcc-----------------ccHHHHHHHHH----------HhCCCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 540 ASKDDLKPYT-----------------MAVQDSARVTQ----------ELGIEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 540 ~NK~Dl~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
+||+|+...+ ...+.+..+.. ..++ .+++|||+++ ||+.+|..+.+.+...
T Consensus 241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9999986533 12444554532 2233 3789999999 9999999999987644
Q ss_pred C
Q 006490 592 H 592 (643)
Q Consensus 592 ~ 592 (643)
+
T Consensus 320 ~ 320 (327)
T 3ohm_A 320 N 320 (327)
T ss_dssp T
T ss_pred h
Confidence 3
No 355
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.46 E-value=7.2e-13 Score=131.69 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=81.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhh----
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL---- 495 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~---- 495 (643)
...++|+++|.+|||||||+|+|++........ +.++.......+... ...+.+|||+|++.+... ...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~--~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYV--NHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEE--CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccc--hHHHHHHHH
Confidence 357999999999999999999999988654443 322223333334444 357889999998766443 12222
Q ss_pred -----ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 496 -----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 496 -----~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
..+|++++|+|++..........|+..+....... ...|+++|+||+|+..
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence 28999999999876432233345666666543211 0249999999999964
No 356
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=7.7e-13 Score=138.79 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-ceeEEEEeCCCCCcch----hhhH---HhhccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENK----GKLN---EELKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~a 83 (643)
..|+|+|++|||||||+++|++... ..+++.++-.... ..+... ...+.+|||||+.+.. .+.. ..+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~-G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL-GVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE-EEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee-eEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4589999999999999999998753 1223322111111 112222 3679999999985421 1112 335679
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcccceEEEeCccc
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (643)
+.+|.|+|++ ...+..+. .|.+.+.... .+.|.++|+||+|+... . .. +.+.......+ .+++.+||++
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~-~~-~~l~~~l~~~g--~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--E-AV-KALADALAREG--LAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H-HH-HHHHHHHHTTT--SCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--H-HH-HHHHHHHHhcC--CeEEEEECCC
Confidence 9999999998 66666665 4666665543 26899999999998753 1 11 11222222222 2689999999
Q ss_pred CCChhHHHHHHHHHHhCCC
Q 006490 161 MIQVPDVFYYAQKAVLHPT 179 (643)
Q Consensus 161 ~~gi~~l~~~i~~~~~~~~ 179 (643)
+.|++++++.+.+.+....
T Consensus 309 g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSC
T ss_pred ccCHHHHHHHHHHHHHhcc
Confidence 9999999999999886543
No 357
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.45 E-value=5.6e-13 Score=149.77 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=80.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCCcccceEEEEEEcCCCcEEEEEEecC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE--------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI 480 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~--------------------~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~ 480 (643)
.+..+|+|+|.+|+|||||+++|+...... ...+|.... ...+.. ....+.+|||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEECc
Confidence 356899999999999999999998421100 000122211 222222 34678899999
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
|+..+... +..+++.+|++|+|+|++++.+++....|. .+... ++|+++|+||+|+..
T Consensus 86 G~~df~~~--~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~------~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIE--VERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY------KVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTT
T ss_pred CccchHHH--HHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc------CCCEEEEEECCCccc
Confidence 99887665 678899999999999999988877655554 34443 899999999999875
No 358
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.44 E-value=3.7e-14 Score=147.34 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=93.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----C-CC----------------------cccc--------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY-----A-PT----------------------TGEQ-------------- 459 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-----~-~t----------------------~~~~-------------- 459 (643)
..++|+|+|.+|||||||+|+|++.++.... . |+ ++.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998875222 1 22 0000
Q ss_pred ---------eEEEEEEcCCCcEEEEEEecCCch-------------hhhhhhccHHhhccC-CEEEEEEeCCChhhHHHH
Q 006490 460 ---------YAVNVVDQPGGNKKTLILQEIPEE-------------GVKKILSNKEALASC-DVTIFVYDSSDEYSWKRT 516 (643)
Q Consensus 460 ---------~~~~~v~~~g~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~a-d~illv~D~s~~~s~~~~ 516 (643)
.....+..+ ....+.+|||+|.. .+..+ ...++..+ +++++|.|++....-...
T Consensus 110 g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHH--HHHHHTSTTEEEEEEEETTSCGGGCHH
T ss_pred ccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHH--HHHHHcCCCeEEEEEecCCCccchhHH
Confidence 000011111 13457789999952 22333 45566555 456667777654332222
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHH--HHHHhCCCCcEEeeeccC-CHHHHHHHHHH
Q 006490 517 KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSAR--VTQELGIEPPIPVSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 517 ~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~ 586 (643)
..++..+... +.|+++|+||+|+.+.... ....+. +....++.+++++||++| |++++++.+.+
T Consensus 187 ~~i~~~~~~~------~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTT------CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcC------CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2333333222 7999999999999764331 111110 000123335789999999 99999999887
No 359
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=1e-13 Score=145.20 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCC----------------------cccC-CceeEEEEeCCC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPP----------------------DFYP-DRVPVTIIDTSS 68 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~i~Dt~G 68 (643)
+||+|+|.||||||||+|+|++... +.++|.++....... .+.. ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999999872 233443222111110 0011 146799999999
Q ss_pred CCcc----hhhhH---HhhccCCEEEEEEECCCc
Q 006490 69 SLEN----KGKLN---EELKRADAVVLTYACNQQ 95 (643)
Q Consensus 69 ~~~~----~~~~~---~~~~~ad~il~v~d~~~~ 95 (643)
+... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22222 357899999999999875
No 360
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.43 E-value=1.2e-13 Score=143.94 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=95.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CcccceEEEE-------------------------------------
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNV------------------------------------- 464 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~-t~~~~~~~~~------------------------------------- 464 (643)
..+|+|+|++|||||||+|+|+|..+...... .++....+..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999887444432 1111111111
Q ss_pred ----------------EEcCCCcEEEEEEecCCchhh-------------hhhhccHHhhccCCEEEEEEeCCChhhHHH
Q 006490 465 ----------------VDQPGGNKKTLILQEIPEEGV-------------KKILSNKEALASCDVTIFVYDSSDEYSWKR 515 (643)
Q Consensus 465 ----------------v~~~g~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~ad~illv~D~s~~~s~~~ 515 (643)
+..+ ....+.+|||+|.... ..+ ...++.++|++|+|+|.++.....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~--~~~~i~~~d~iilvv~~~~~~~~~- 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM--VRSYIEKPNCIILAISPANQDLAT- 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH--HHHHHHSSSEEEEEEEETTSCGGG-
T ss_pred hcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHH--HHHHhhcCCeEEEEeecccCCcCC-
Confidence 1111 2234678999997654 233 677889999999999876532211
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc-HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHH
Q 006490 516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSR 583 (643)
Q Consensus 516 ~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~ 583 (643)
..|+..+..... . +.|+++|+||+|+...... .+..+.+...++.. ++++|++++ ++++.+..
T Consensus 190 -~~~~~l~~~~~~-~--~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 -SDAIKISREVDP-S--GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDM 254 (360)
T ss_dssp -CHHHHHHHHSCT-T--CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCH
T ss_pred -HHHHHHHHHhcc-c--CCCEEEEEeCCccCCCcccHHHHHcCccccccCC-eEEEEECChHHhccCCCH
Confidence 222332332222 2 7899999999999864432 22233333344554 899999998 88765544
No 361
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.43 E-value=1.1e-12 Score=143.07 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=84.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-----------------CCCCCCCCC-----CeeeCCcccCCceeEEEEeCCCCC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-----------------PEKVPPVHA-----PTRLPPDFYPDRVPVTIIDTSSSL 70 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-----------------~~~~~~~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~ 70 (643)
-+|+|+|+.++|||||..+|+...- ..++..... .......+.++++.++|+||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 3599999999999999999963210 011111000 001222345688999999999999
Q ss_pred cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
+|......+++-+|++|+|+|+...-..+... .++.+.++ ++|+|+++||+|....
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence 99999999999999999999988776555543 55677776 8999999999998764
No 362
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=2.9e-13 Score=141.86 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-C-Ccc-cceEEEEEE--c-----------------CC-CcEEEEEEecC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTG-EQYAVNVVD--Q-----------------PG-GNKKTLILQEI 480 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~-t~~-~~~~~~~v~--~-----------------~g-~~~~~~i~d~~ 480 (643)
++|+|+|.||||||||+|+|++.. ..+.. | ||. .......+. . .+ ....+.+||++
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999999999999987 33222 3 332 222221111 1 11 12467899999
Q ss_pred Cchhh----hhh-hccHHhhccCCEEEEEEeCCCh
Q 006490 481 PEEGV----KKI-LSNKEALASCDVTIFVYDSSDE 510 (643)
Q Consensus 481 g~~~~----~~~-~~~~~~~~~ad~illv~D~s~~ 510 (643)
|.... ..+ .+...+++.||++++|+|++++
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 97531 112 1123567999999999999875
No 363
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.41 E-value=8.3e-13 Score=134.11 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=92.0
Q ss_pred EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCC
Q 006490 462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSG 531 (643)
Q Consensus 462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~ 531 (643)
...++. +..++.+||++|++.+.++ +..++++++++|+|+|++ +..++.....|+..+.......
T Consensus 153 ~~~~~~--~~v~l~iwDtaGQe~~R~~--w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~- 227 (340)
T 4fid_A 153 EYDFVV--KDIPFHLIDVGGQRSERKX--WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK- 227 (340)
T ss_dssp EEEEES--SSCEEEEEECCSCHHHHHH--HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT-
T ss_pred EEEEEe--eeeeeccccCCCccccccc--HHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC-
Confidence 334444 3467889999999999988 899999999999999998 6788888888888887654323
Q ss_pred CCCcEEEEEeCCCCCCccc----------------cHHHHHH-HHHHh--------------------------CCCCcE
Q 006490 532 YGVPCLLIASKDDLKPYTM----------------AVQDSAR-VTQEL--------------------------GIEPPI 568 (643)
Q Consensus 532 ~~~pvilv~NK~Dl~~~~~----------------~~~~~~~-~~~~~--------------------------~~~~~~ 568 (643)
+.|++|++||+|+..++. ..+.+.. +.+++ ++ .++
T Consensus 228 -~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i-y~h 305 (340)
T 4fid_A 228 -GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV-YTN 305 (340)
T ss_dssp -TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE-EEE
T ss_pred -CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce-EEE
Confidence 799999999999865321 1222322 23333 12 378
Q ss_pred EeeeccC-CHHHHHHHHHHHHhC
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
+|||+++ |++.+|..+.+.+..
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999 999999999987753
No 364
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=1.6e-12 Score=146.04 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=80.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC--CCCC---CCC-------------CCcccceEEEEEEcCCCcEEEEEEecCCc
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSE---NYA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPE 482 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~--~~~~---~~~-------------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~ 482 (643)
.+..+|+|+|.+|+|||||+|+|++. .+.. +.. +.++.......+... ...+.+|||+|+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 34679999999999999999999952 2110 110 001111112223333 467889999999
Q ss_pred hhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 483 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 483 ~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
..+... ...+++.+|++|+|+|++++.+++....|. .+... ++|+++|+||+|+..
T Consensus 86 ~df~~~--~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~------~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVE--VERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY------GVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHH--HHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT------TCCEEEEEECTTSTT
T ss_pred cchHHH--HHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc------CCCEEEEEECCCccc
Confidence 877665 678889999999999999987766555443 34443 799999999999975
No 365
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.39 E-value=1.5e-13 Score=139.30 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=106.0
Q ss_pred HHHHHHhcCCCC-CCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChh-hHHH
Q 006490 438 ALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKR 515 (643)
Q Consensus 438 SLln~l~~~~~~-~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~ 515 (643)
+|+++++.+.|. ..+.||+++.+... +... + +..+||+ ++++..+ +..+++++|++|+|||++++. ++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~-~--~~~iwD~--qer~~~l--~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDET-G--SGVIENV--LHRKNLL--TKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCS-S--SEEEEEE--CCCSCEE--TTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEE-EcCC-C--eEEEEEE--cccccee--eccccccCCEEEEEEeCCCCCCCHHH
Confidence 688899988888 77889998655432 2222 2 6778999 7778777 678999999999999999987 7888
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhC--CCCcEEeeeccC-CHHHHHHHHHH
Q 006490 516 TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG--IEPPIPVSMKSK-DLNNVFSRIIW 586 (643)
Q Consensus 516 ~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~g-~i~~l~~~l~~ 586 (643)
+..|+..+... ++|+++|+||+||.+.... ++.+++++.++ +. +++|||++| |++++|..+..
T Consensus 104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 104 IDKFLVLAEKN------ELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHT------TCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHC------CCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence 89999877653 7999999999999865432 44667777777 55 999999999 99999988654
No 366
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.39 E-value=2.2e-12 Score=129.01 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=62.6
Q ss_pred EEeCCCCC-cchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh
Q 006490 63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141 (643)
Q Consensus 63 i~Dt~G~~-~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~ 141 (643)
|-+.||+. .........+..+|+++.|+|+.++.+..+. .+.+++ .++|+++|+||+|+... +..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~-------~~~~ 69 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADA-------AVTQ 69 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCH-------HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH----CCCCEEEEEECcccCCH-------HHHH
Confidence 34567764 3445566789999999999999998766431 122222 37999999999999752 1122
Q ss_pred HHHHhhcc-cceEEEeCcccCCChhHHHHHHHH
Q 006490 142 PIMQQFRE-IETCVECSATTMIQVPDVFYYAQK 173 (643)
Q Consensus 142 ~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 173 (643)
.+.+.+.. -.+++.+||+++.|++++++.+.+
T Consensus 70 ~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 70 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence 23332211 126899999999999998876544
No 367
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.39 E-value=1.7e-13 Score=138.63 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCCCCeeeCC--cccCCceeEEEEeCCCC-------Ccc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATE-SVPEKV--------PPVHAPTRLPP--DFYPDRVPVTIIDTSSS-------LEN 72 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~-~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~-------~~~ 72 (643)
-.++|+|+|++|||||||+|+|.+. .+.... .++........ ........+++|||+|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999999876 332211 01110001111 11223467899999998 444
Q ss_pred hhhhH-------Hhhcc-------------CCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCc
Q 006490 73 KGKLN-------EELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132 (643)
Q Consensus 73 ~~~~~-------~~~~~-------------ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~ 132 (643)
..... .++++ +++++++.+.+. .+++.....+ ++....+.|+++|+||+|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44333 33333 344555554332 1344433223 333344689999999999875432
Q ss_pred cchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhCC
Q 006490 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178 (643)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 178 (643)
.....+.+..+++.++ .+++++||++| |++++|..+.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~--~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 RERLKKRILDEIEEHN--IKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC--CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2112344555666665 36899999999 9999999999887543
No 368
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=1.8e-12 Score=129.41 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=81.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCcccceEEEEEEcCCCcEEEEEEecCCchhhhhhhc-----cHH
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKE 493 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~~~-----~~~ 493 (643)
...++|+++|.+|+|||||+|+|++..+..+.. +++.. .....++. ....+.+|||+|...+..+.. ...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEee--CCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence 457999999999999999999999988754443 23322 22222333 456788999999865543210 111
Q ss_pred --hhccCCEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc
Q 006490 494 --ALASCDVTIFVYDSSDEYSWK-RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 549 (643)
Q Consensus 494 --~~~~ad~illv~D~s~~~s~~-~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~ 549 (643)
....+|++++|+|++.. ++. ....|+..+....... ...|+++|+||+|+....
T Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCcC
Confidence 13479999999998653 232 2346666665543210 026999999999997543
No 369
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.39 E-value=5.3e-13 Score=135.03 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=83.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCcccceEEEEEEcCCCcEEEEEEecCCc-------hhh
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EGV 485 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~-~~~~~~--------~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~-------~~~ 485 (643)
-.++|+|+|++|||||||+|+|.+. .+...+ .+|.........+...+....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3489999999999999999999886 333222 112221122222333444567789999997 333
Q ss_pred hhhhc-----cHHhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 486 KKILS-----NKEALA-------------SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 486 ~~~~~-----~~~~~~-------------~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
..+.. ...+++ .+++++++.+.+.. +++.... ..+..... +.|+++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~~----~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIHN----KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHTT----TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHHh----cCCEEEEEEeCCCCC
Confidence 33311 002222 24556666554321 2222221 22222221 679999999999986
Q ss_pred cccc---HHHHHHHHHHhCCCCcEEeeeccCCHHHHHHHHHHHHh
Q 006490 548 YTMA---VQDSARVTQELGIEPPIPVSMKSKDLNNVFSRIIWAAE 589 (643)
Q Consensus 548 ~~~~---~~~~~~~~~~~~~~~~~~vSa~~g~i~~l~~~l~~~~~ 589 (643)
..+. .+.+.++++.+++. ++++||++||++++|..+.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIK-IYHLPDAESDEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCCCC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCe-EEecCCccccccHHHHHHHHHhh
Confidence 5432 45677888889986 99999999999999999998775
No 370
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=1.1e-12 Score=132.78 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=77.9
Q ss_pred CCceeEEEEe-CCC-----CCcchhhhHHhhccCCEEEEEEECCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 56 PDRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 56 ~~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
++.+.+.++| +.| ++++..+...+++++|++++|+|++++. ++..+. +|+..+... ++|+++|+||+|+.
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLL 123 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGC
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCC
Confidence 3445566666 333 5566677778999999999999999885 787766 588877765 89999999999997
Q ss_pred CCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHHHH
Q 006490 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
+...+ ...+....+.+.++ .+++++||++|.|++++++
T Consensus 124 ~~~~v-~~~~~~~~~~~~~g--~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 124 NEEEK-KELERWISIYRDAG--YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp CHHHH-HHHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred Ccccc-HHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence 53211 11122333334444 3699999999999998875
No 371
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=8.2e-13 Score=144.35 Aligned_cols=119 Identities=24% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCee-eCCcc--------------------c--C----C
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP----EKVPPVHAPTR-LPPDF--------------------Y--P----D 57 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~----~~~~~~~~~~~-~~~~~--------------------~--~----~ 57 (643)
.....+|+|+|.+|||||||+|+|++..+. ...+++..... ..... . + .
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 445689999999999999999999998863 22333211111 00000 0 0 0
Q ss_pred c-----------eeEEEEeCCCCCc-----------chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCC
Q 006490 58 R-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK 115 (643)
Q Consensus 58 ~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~ 115 (643)
+ ..+.||||||+.. +......++..+|++|+|+|+++....+... .|+..++.. +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence 0 3689999999875 3355567889999999999998754444433 477777655 6
Q ss_pred CcEEEEEecccCCCC
Q 006490 116 VPIIVAGCKLDLRGD 130 (643)
Q Consensus 116 ~pvilv~NK~D~~~~ 130 (643)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999998753
No 372
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=1.5e-12 Score=144.96 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=100.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--ee-------------------------------------
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RL------------------------------------- 50 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~--~~------------------------------------- 50 (643)
....+|+|+|++|+|||||+|+|++..+.+...+..+.. .+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345689999999999999999999987633222111100 00
Q ss_pred ------------CCc-ccCCceeEEEEeCCCCCcch-------------hhhHHhh-ccCCEEEEEEECCCcccHHHHHH
Q 006490 51 ------------PPD-FYPDRVPVTIIDTSSSLENK-------------GKLNEEL-KRADAVVLTYACNQQSTLSRLSS 103 (643)
Q Consensus 51 ------------~~~-~~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~-~~ad~il~v~d~~~~~s~~~~~~ 103 (643)
... .......+.|+||||+.... .....++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 000 01223458899999986511 1222344 5789999999998764433332
Q ss_pred HHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhh-HH-HHhhcccceEEEeCcccCCChhHHHHHHHHH
Q 006490 104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG-PI-MQQFREIETCVECSATTMIQVPDVFYYAQKA 174 (643)
Q Consensus 104 ~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 174 (643)
.++..+... ++|+|+|+||+|+...... .. .... .. ...++ ..+++++||++|.|+++|++.+.+.
T Consensus 208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~~-~~-~il~~~~~~l~lg-~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQ--GQRTIGVITKLDLMDEGTD-AR-DVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTT--CSSEEEEEECTTSSCTTCC-SH-HHHTTCSSCCSSC-EEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEeCcccCCcchh-hH-HHHHHHhhhhhcc-CCceEEecccccccchhHHHHHHHH
Confidence 356666655 7999999999999765332 11 1111 00 00112 2357889999999999999998873
No 373
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.1e-13 Score=141.82 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-------CCCCeeeCCccc--CCceeEEEEeCCCCCcchh-------
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-------VHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG------- 74 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-------~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~------- 74 (643)
.++|+|+|++|||||||+|+|++..+... ..+ +.....+...+. .....+++|||+|+.....
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 46899999999999999999998775211 111 111111222222 2234689999999875311
Q ss_pred h------------------hHHhhccCCEEEEEEECCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch
Q 006490 75 K------------------LNEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (643)
Q Consensus 75 ~------------------~~~~~~~ad~il~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~ 135 (643)
. ...++.++++.+++|+.... .+++.....|+..+. .++|+|+|+||+|+........
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHH
Confidence 1 01234455554444443332 345555445777765 3789999999999875433311
Q ss_pred hhhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
....+...+...+ .+++++||+++.++.+++..+...++
T Consensus 188 ~k~~i~~~~~~~~--i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 188 FKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHT--CCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHcC--CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 1233444445554 36899999999999988877665543
No 374
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.38 E-value=6.2e-12 Score=141.43 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=80.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCC--CCC---CCC-------------CCcccceEEEEEEcC-----CCcEEEEEE
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE---NYA-------------PTTGEQYAVNVVDQP-----GGNKKTLIL 477 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~--~~~---~~~-------------~t~~~~~~~~~v~~~-----g~~~~~~i~ 477 (643)
.+..+|+|+|.+|+|||||+++|+... +.. +.. ..++.......+.+. +....+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 345789999999999999999997531 110 000 000111111122222 233678899
Q ss_pred ecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 478 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 478 d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
||+|+..+... ...+++.||++|+|+|++++.+.+....| ..+... ++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~--~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~------~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIE--VERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY------KVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHH--HHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc------CCCEEEEEeCCCccc
Confidence 99999887665 67889999999999999998765544434 333333 799999999999865
No 375
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=8.2e-13 Score=138.64 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=79.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCcccceEEEEEEcCCCcEEEEEEecCCchhhh-------h
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-------K 487 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-------~ 487 (643)
.++|+|+|++|||||||+|+|++..+..... +|+........+...+....+.+||++|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 4789999999999999999999987632221 122211111122223334467789999975421 1
Q ss_pred hhc----------------cHHhhccCCE--EEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCc
Q 006490 488 ILS----------------NKEALASCDV--TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY 548 (643)
Q Consensus 488 ~~~----------------~~~~~~~ad~--illv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~ 548 (643)
+.. +...+.++++ ++++.+.+. .++... ..|+..+.. +.|+|+|+||+|+...
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT-------TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc-------cCcEEEEEEcccCccH
Confidence 100 1123445554 444444431 223333 245555531 7899999999999875
Q ss_pred ccc---HHHHHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490 549 TMA---VQDSARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 549 ~~~---~~~~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
... .+.+.+.+...++. ++++||+++ ++++++..+...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-CCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhhC
Confidence 444 25667777788887 899999999 9999888887753
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=135.20 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=88.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC------C--CCCCCCCCC----------------------------------CC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATE------S--VPEKVPPVH----------------------------------AP 47 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~------~--~~~~~~~~~----------------------------------~~ 47 (643)
+....|+|+|+||||||||+|+|++. + +....|... ++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34688999999999999999999862 1 000001000 00
Q ss_pred ee--eC--CcccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 006490 48 TR--LP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123 (643)
Q Consensus 48 ~~--~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N 123 (643)
++ .. ..+...++.+.++||+|+... .......+|++++|+|+......+.+. ..+ . ..|.++|+|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i--l--~~~~ivVlN 220 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI--I--EMADLVAVT 220 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEEC
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH--H--hcCCEEEEe
Confidence 00 00 011235678999999997532 234567899999999987654322221 111 2 568899999
Q ss_pred cccCCCCCccchhhhhhhHHHHhhc--------ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 124 KLDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 124 K~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
|+|+..... .......+...+. ...+++.+||++|.|++++++++.+.+
T Consensus 221 K~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 999853210 0111222222111 013579999999999999999998765
No 377
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=8.3e-12 Score=127.94 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=56.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCCCc---------------EEEEEEecCCchhh
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGV 485 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g~~---------------~~~~i~d~~g~~~~ 485 (643)
.++|+|+|.||||||||+|+|++........| |..... -.+..++.. ..+.+||++|....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 36899999999999999999999774322223 322222 234455321 46789999997654
Q ss_pred h----hh-hccHHhhccCCEEEEEEeCCC
Q 006490 486 K----KI-LSNKEALASCDVTIFVYDSSD 509 (643)
Q Consensus 486 ~----~~-~~~~~~~~~ad~illv~D~s~ 509 (643)
. .+ .+...+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 22 123567899999999999986
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=2.5e-13 Score=140.97 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=71.9
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~ 136 (643)
.++.+.||||||... .....+..+|++|+|+|.........+. ....++|+++|+||+|+..... .
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~---~ 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKE---A 235 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHH---H
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhH---H
Confidence 568899999999654 2334568999999999987655443221 1112569999999999864211 1
Q ss_pred hhhhhHHHHhh---c-----ccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 137 EEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 137 ~~~~~~~~~~~---~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
......+...+ + ...+++++||++|.||+++++++.+.+.
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 12222333322 1 1146999999999999999999988764
No 379
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.35 E-value=2.4e-12 Score=143.28 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=99.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCcccce----------------------------------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQY---------------------------------------- 460 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~-~t~~~~~---------------------------------------- 460 (643)
...+|+|+|.+|+|||||+|+|+|..+..... ++|+.-.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45699999999999999999999988743332 2222111
Q ss_pred ----------EEEEEEcCCCcEEEEEEecCCchh-------------hhhhhccHHhh-ccCCEEEEEEeCCChhhHHHH
Q 006490 461 ----------AVNVVDQPGGNKKTLILQEIPEEG-------------VKKILSNKEAL-ASCDVTIFVYDSSDEYSWKRT 516 (643)
Q Consensus 461 ----------~~~~v~~~g~~~~~~i~d~~g~~~-------------~~~~~~~~~~~-~~ad~illv~D~s~~~s~~~~ 516 (643)
....+..+ ....+.++||+|-.. +..+ ...++ ..+|++++|+|++++..-+..
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~l--v~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHH--HHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHH--HHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 11112222 223466799999432 1222 23334 589999999999976442333
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHH----hCCCCcEEeeeccC-CHHHHHHHHHHH
Q 006490 517 KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE----LGIEPPIPVSMKSK-DLNNVFSRIIWA 587 (643)
Q Consensus 517 ~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~vSa~~g-~i~~l~~~l~~~ 587 (643)
..++..+... +.|+++|+||+|+............ .+. +++.+++++||++| |++++++.+.+.
T Consensus 207 l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2344444332 7999999999999865432211111 111 24446889999999 999999999873
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.35 E-value=7.9e-13 Score=127.86 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=92.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCCC---------CCee--e--CC--cc----------cCCce
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVP-------EKVPPVH---------APTR--L--PP--DF----------YPDRV 59 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~-------~~~~~~~---------~~~~--~--~~--~~----------~~~~~ 59 (643)
..+|+|+|.+|||||||+++|+..... ...++.. +... . +. .+ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999999865211 0111100 0000 0 00 01 22456
Q ss_pred eEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhh
Q 006490 60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV 139 (643)
Q Consensus 60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~ 139 (643)
.+.+|||+|+..... .+...++.+++|+|++..... . | ...... ++|+++|+||+|+...... ...+
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~---~-~~~~~~--~~~~iiv~NK~Dl~~~~~~-~~~~- 176 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--V---E-KHPEIF--RVADLIVINKVALAEAVGA-DVEK- 176 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--H---H-HCHHHH--HTCSEEEEECGGGHHHHTC-CHHH-
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--h---h-hhhhhh--hcCCEEEEecccCCcchhh-HHHH-
Confidence 799999999521111 111357899999998765421 1 1 111222 5799999999998542111 1222
Q ss_pred hhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490 140 MGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
+......++...+++++||++|.|++++++++.+.+..
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 23333333333479999999999999999999887643
No 381
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=2.7e-11 Score=124.18 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=55.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCC-----------------ceeEEEEeCCCCCcch
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPD-----------------RVPVTIIDTSSSLENK 73 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~ 73 (643)
.++|+|+|.||||||||+|+|++..+ +.++|.++..... ..+... +..+.+|||||+..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 37899999999999999999999773 3334432211111 111111 2579999999998653
Q ss_pred h----h---hHHhhccCCEEEEEEECCC
Q 006490 74 G----K---LNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 74 ~----~---~~~~~~~ad~il~v~d~~~ 94 (643)
. + .-.+++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2 2246899999999999986
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=132.44 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=88.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCCCCCcc-------------------cceEEEEEE-------c
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTG-------------------EQYAVNVVD-------Q 467 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~------~~~-~~~~~t~~-------------------~~~~~~~v~-------~ 467 (643)
+....|+|+|+||||||||+|+|++. +.. ...+|++. ....+.... +
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999962 111 11122111 111111000 0
Q ss_pred C-----------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490 468 P-----------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (643)
Q Consensus 468 ~-----------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv 536 (643)
. .....+.++||+|.... .......+|++++|+|++++...+.+.. .+ . ..|.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~-----~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i--l------~~~~ 215 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS-----EFAVADMVDMFVLLLPPAGGDELQGIKR---GI--I------EMAD 215 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C-----HHHHHTTCSEEEEEECCC-----------------C------CSCS
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh-----hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH--H------hcCC
Confidence 0 02235678999995311 1234578999999999987643222111 11 1 5688
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHh---------CCCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 537 LLIASKDDLKPYTMAVQDSARVTQEL---------GIEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 537 ilv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++|+||+|+............+...+ ..++++++||++| |+++++++|.+.+.
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999875322112233333322 1235799999999 99999999998764
No 383
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.32 E-value=2e-12 Score=134.22 Aligned_cols=153 Identities=11% Similarity=0.125 Sum_probs=94.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC------CCC-CCCCCCccc-----------------ceEEEEEEcCC-------
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER------PFS-ENYAPTTGE-----------------QYAVNVVDQPG------- 469 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~------~~~-~~~~~t~~~-----------------~~~~~~v~~~g------- 469 (643)
....+|+|+|.||||||||+++|... +.. ...+|.... ...+.....++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45689999999999999999999732 111 011111000 00011111110
Q ss_pred -------------CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490 470 -------------GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (643)
Q Consensus 470 -------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv 536 (643)
....+.++||+|.... ....+..+|++++|+|++..+..+.+... + . ..|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~------~--~~p~ 220 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS-----EVAVANMVDTFVLLTLARTGDQLQGIKKG---V------L--ELAD 220 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH-----HHHHHTTCSEEEEEEESSTTCTTTTCCTT---S------G--GGCS
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH-----HHHHHHhCCEEEEEECCCCCccHHHHHHh---H------h--hcCC
Confidence 1346778999994322 22345899999999999876543222210 0 0 5799
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHH---h-----CC-CCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 537 LLIASKDDLKPYTMAVQDSARVTQE---L-----GI-EPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 537 ilv~NK~Dl~~~~~~~~~~~~~~~~---~-----~~-~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++|+||+|+...........++.+. . ++ .++++|||++| |++++++.|.+.+.
T Consensus 221 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 221 IVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999999997543333333344433 2 22 46999999999 99999999999764
No 384
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.31 E-value=3.4e-12 Score=139.50 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=82.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCC--CCC-CCCcccceEEEEE---------------------------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFS--ENY-APTTGEQYAVNVV--------------------------------- 465 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~--~~~-~~t~~~~~~~~~v--------------------------------- 465 (643)
..++|+|+|.+|||||||+|+|++..+. .++ .|++.. ......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4679999999999999999999999875 233 244422 111000
Q ss_pred ----EcCCC-cEEEEEEecCCchh-----------hhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q 006490 466 ----DQPGG-NKKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED 529 (643)
Q Consensus 466 ----~~~g~-~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~ 529 (643)
..++. ...+.+|||+|... +... +..++..+|++|+|+|+++.........++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~--~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAV--LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHH--HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHH--HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 00000 02467899999754 2233 456789999999999998854445556666655433
Q ss_pred CCCCCcEEEEEeCCCCCCcccc
Q 006490 530 SGYGVPCLLIASKDDLKPYTMA 551 (643)
Q Consensus 530 ~~~~~pvilv~NK~Dl~~~~~~ 551 (643)
+.|+++|+||+|+....+.
T Consensus 218 ---~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp ---GGGEEEEEECGGGSCHHHH
T ss_pred ---CCCEEEEEECCCccCHHHH
Confidence 6899999999999875433
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.2e-12 Score=126.57 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=95.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCcc--------cceEEEEEEcCC----------------Cc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSE------NYAPTTG--------EQYAVNVVDQPG----------------GN 471 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~~t~~--------~~~~~~~v~~~g----------------~~ 471 (643)
...+|+|+|.+|||||||+++|++..... ..++.++ .+.....++.++ ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999999752211 0111110 012233344432 12
Q ss_pred EEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc-c
Q 006490 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-M 550 (643)
Q Consensus 472 ~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~-~ 550 (643)
..+.++||+|.-.... .....++.+++|+|++++... ...+. ... +.|+++|+||+|+.... .
T Consensus 109 ~d~iiidt~G~~~~~~-----~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~~------~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV-----DFDLGENYRVVMVSVTEGDDV--VEKHP---EIF------RVADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSGGG-----GCCCSCSEEEEEEEGGGCTTH--HHHCH---HHH------HTCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCCCc-----hhccccCcEEEEEeCCCcchh--hhhhh---hhh------hcCCEEEEecccCCcchhh
Confidence 3567899998511111 111357899999999876431 11111 111 57899999999986532 2
Q ss_pred cHHHHHHHHHHhC-CCCcEEeeeccC-CHHHHHHHHHHHHhCC
Q 006490 551 AVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAEHP 591 (643)
Q Consensus 551 ~~~~~~~~~~~~~-~~~~~~vSa~~g-~i~~l~~~l~~~~~~~ 591 (643)
..+...+..+.++ ..+++++||++| |+++++++|.+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 2344444555544 235899999999 9999999999987543
No 386
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.31 E-value=2.4e-12 Score=143.44 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CC-----CCCCCCC-----------CCeeeCCcccCCceeEEEEeCCCCCcchhh
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES--VP-----EKVPPVH-----------APTRLPPDFYPDRVPVTIIDTSSSLENKGK 75 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~--~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 75 (643)
+|+|+|+.++|||||..+|+... +. .....+. +.......+.++++.++|+||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 49999999999999999997432 11 0000000 001133445678899999999999999999
Q ss_pred hHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 76 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
...+++-+|++|+|+|+...-..+.. ..++.+.+. ++|.|+++||+|....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence 99999999999999998776544443 356666666 7999999999998654
No 387
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=1.8e-12 Score=133.80 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=68.0
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccch
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS 135 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~ 135 (643)
..++.+.||||||...... .....+|++++|+|++.......+. . ... ++|+++|+||+|+.....
T Consensus 146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~--~~~--~~p~ivv~NK~Dl~~~~~--- 211 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----K--GLM--EVADLIVINKDDGDNHTN--- 211 (341)
T ss_dssp HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----H--HHH--HHCSEEEECCCCTTCHHH---
T ss_pred ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----H--hhh--cccCEEEEECCCCCChHH---
Confidence 3467899999999765432 3568999999999986553321111 0 111 468899999999864311
Q ss_pred hhhhhhHHHH---hhcc-----cceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 136 ~~~~~~~~~~---~~~~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
.......+.. .++. ..+++++||++|.|++++++.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111122222 2221 236899999999999999999988653
No 388
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.29 E-value=3.2e-12 Score=131.46 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=87.1
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 124 (643)
..+.+.+|||+|++.+...+..++++++++|+|||++ +..++++... |+..+... ..+.|+|||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 7888998874 66666542 358999999999
Q ss_pred ccCCCCCcc-ch------------------hhhhhhHH-HHhh-------------cccceEEEeCcccCCChhHHHHHH
Q 006490 125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA 171 (643)
Q Consensus 125 ~D~~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~i 171 (643)
+|+...... +. ..+....+ .++| +....+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 997532110 00 01222333 3332 111236899999999999999998
Q ss_pred HHHHh
Q 006490 172 QKAVL 176 (643)
Q Consensus 172 ~~~~~ 176 (643)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 389
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=7.8e-12 Score=124.24 Aligned_cols=165 Identities=19% Similarity=0.119 Sum_probs=96.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHh-----cCCC--CCCCCCCCC-------------Cee-e-CCcc-----------
Q 006490 8 SSRTGVRVVVVGDRGTGKSSLIAAAA-----TESV--PEKVPPVHA-------------PTR-L-PPDF----------- 54 (643)
Q Consensus 8 ~~~~~~kI~lvG~~~vGKSsL~n~l~-----~~~~--~~~~~~~~~-------------~~~-~-~~~~----------- 54 (643)
..++...++++|.+|||||||++.|. +.+. ....++... ... . ....
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence 35667889999999999999999998 4441 111111000 000 0 0000
Q ss_pred ---------------cCCceeEEEEeCCCCCcchhhhH------HhhccCCEEEEEEECCCcccHHHHHHHHH---HHHH
Q 006490 55 ---------------YPDRVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYWL---PELR 110 (643)
Q Consensus 55 ---------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~il~v~d~~~~~s~~~~~~~~~---~~l~ 110 (643)
....+.+.||||||+.+...... .++.. +++++|+|+....+.......+. ....
T Consensus 90 ~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 01235899999999865432211 24566 89999999765444433321111 1122
Q ss_pred hcCCCCcEEEEEecccCCCCCccchhhhh---hh----HH-----------------HHhhcccceEEEeCcccCCChhH
Q 006490 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEV---MG----PI-----------------MQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 111 ~~~~~~pvilv~NK~D~~~~~~~~~~~~~---~~----~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
.. ++|+++|+||+|+..........+. .. .+ ...++...+++++||++|.|+++
T Consensus 169 ~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 169 RL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp HH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred cc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence 22 7899999999998753211000110 00 10 13333223689999999999999
Q ss_pred HHHHHHHHH
Q 006490 167 VFYYAQKAV 175 (643)
Q Consensus 167 l~~~i~~~~ 175 (643)
+++++.+.+
T Consensus 247 l~~~i~~~~ 255 (262)
T 1yrb_A 247 LETLAYEHY 255 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988765
No 390
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.27 E-value=7.3e-12 Score=128.84 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=90.4
Q ss_pred cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 006490 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAG 122 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~ 122 (643)
..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++++... |+..+... ..+.|+|||+
T Consensus 189 ~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~ 267 (353)
T 1cip_A 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFL 267 (353)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEE
Confidence 3457899999999999999999999999999999999998 567888774 66666542 3589999999
Q ss_pred ecccCCCCC---------------ccchhhhhhhHHHHhh--------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 123 CKLDLRGDH---------------NATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 123 NK~D~~~~~---------------~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||+|+.... .+ ..++....+...| .....+++|||++|.||.++|+++.+.+.
T Consensus 268 NK~DL~~~ki~~~~l~~~fp~~~g~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 268 NKKDLFEEKIKKSPLTICYPEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp ECHHHHHHHHTTSCGGGTCTTCCSCS-CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ECcCchhhhccccchhhcccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 999985321 12 2333333333221 11235899999999999999999988765
No 391
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.27 E-value=9.2e-12 Score=128.06 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=94.5
Q ss_pred EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCC
Q 006490 462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG 531 (643)
Q Consensus 462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~ 531 (643)
...+... ...+.+||++|++.+..+ +..++++++++|+|+|+++ ..+++....|+..+.......
T Consensus 185 ~~~~~~~--~~~l~iwDt~GQe~~r~~--w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~- 259 (353)
T 1cip_A 185 ETHFTFK--DLHFKMFDVGGQRSERKK--WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT- 259 (353)
T ss_dssp EEEEEET--TEEEEEEEECCSGGGGGG--GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred EEEEeeC--CeeEEEEeCCCchhhhHH--HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc-
Confidence 3344443 567889999999999888 8899999999999999998 567888888888887643222
Q ss_pred CCCcEEEEEeCCCCCCcc----------------ccHHHHHHHHHH-----------hCCCCcEEeeeccC-CHHHHHHH
Q 006490 532 YGVPCLLIASKDDLKPYT----------------MAVQDSARVTQE-----------LGIEPPIPVSMKSK-DLNNVFSR 583 (643)
Q Consensus 532 ~~~pvilv~NK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~g-~i~~l~~~ 583 (643)
+.|+||++||+|+...+ ...+.+..++.. .++ .+++|||++| ||+++|++
T Consensus 260 -~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 260 -DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp -TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHH
T ss_pred -CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHH
Confidence 79999999999985422 224556666652 233 4789999999 99999999
Q ss_pred HHHHHh
Q 006490 584 IIWAAE 589 (643)
Q Consensus 584 l~~~~~ 589 (643)
+.+.+.
T Consensus 338 v~~~i~ 343 (353)
T 1cip_A 338 VTDVII 343 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 392
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-10 Score=120.47 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=97.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhh-----hhhccHHhhc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KILSNKEALA 496 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~-----~~~~~~~~~~ 496 (643)
...+|+|||.||||||||+|+|++........|.++.+...-.+..+| ..+.++|++|-..-. ...+....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 457999999999999999999999775444446444444455566653 456779999842111 1123567789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcc---------ccHHHHHHHHHHhCCCCc
Q 006490 497 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT---------MAVQDSARVTQELGIEPP 567 (643)
Q Consensus 497 ~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~ 567 (643)
.||++++|+|+++|.. ....+..++....... ...|.++++||+|..... ...+....+...+.+. .
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt-~ 224 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN-S 224 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC-S
T ss_pred hcCccccccccCccHH--HHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc-C
Confidence 9999999999999843 2333333443322110 157888999999975311 1145666677766665 2
Q ss_pred EEeeeccC-CHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFS 582 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~ 582 (643)
-++-...+ ..+++.+
T Consensus 225 kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 225 AEIAFRCDATVDDLID 240 (376)
T ss_dssp EEEEECSCCCHHHHHH
T ss_pred CCeeecccCCHHHHHH
Confidence 33333444 5565544
No 393
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.24 E-value=1.1e-11 Score=142.08 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=83.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCC---------------C-CCCCeeeCCc--------------ccCCc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEKVP---------------P-VHAPTRLPPD--------------FYPDR 58 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~--~~~~~~---------------~-~~~~~~~~~~--------------~~~~~ 58 (643)
+..+|+|+|++|+|||||+++|+... +....+ + +......... .+..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45689999999999999999998752 111000 0 0000001111 12347
Q ss_pred eeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
+.++||||||+.++...+..+++.+|++|+|+|+++..+.+... .|.. +... ++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQ-ALGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHH-HHHT--TCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHHc--CCCeEEEEECCCcc
Confidence 88999999999999999999999999999999999998887764 3443 3333 79999999999986
No 394
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.23 E-value=2.4e-11 Score=125.39 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeeCCccc-------------------CCceeEEEEeCCCCCc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVH-APTRLPPDFY-------------------PDRVPVTIIDTSSSLE 71 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~i~Dt~G~~~ 71 (643)
++|+|+|.||||||||+|+|++... ..++|.++ ..+.-...+. ..+..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998652 23343321 1111001111 1235799999999876
Q ss_pred ch----hh---hHHhhccCCEEEEEEECCC
Q 006490 72 NK----GK---LNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 72 ~~----~~---~~~~~~~ad~il~v~d~~~ 94 (643)
+. .+ ....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 12 2246899999999999975
No 395
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.23 E-value=9.3e-12 Score=127.95 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=88.4
Q ss_pred CcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 006490 470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS----------DEYSWKRTKELLVEVARLGEDSGYGVPCLLI 539 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv 539 (643)
...++.+||++|++.+.++ +..++++++++|+|||++ +..+|+....|+..+....... +.|++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~~piiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--KTSFMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--SCEEEEE
T ss_pred cceeeEEEECCCchhhhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--CCeEEEE
Confidence 4567889999999999888 889999999999999998 7788999999998887643222 7999999
Q ss_pred EeCCCCCCccc----------------------cHHHHHHHHHH-h-------------CCC-CcEEeeeccC-CHHHHH
Q 006490 540 ASKDDLKPYTM----------------------AVQDSARVTQE-L-------------GIE-PPIPVSMKSK-DLNNVF 581 (643)
Q Consensus 540 ~NK~Dl~~~~~----------------------~~~~~~~~~~~-~-------------~~~-~~~~vSa~~g-~i~~l~ 581 (643)
+||+|+..++. ..+.+..++.. + +.. .+++|||+++ ||+++|
T Consensus 257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 99999854321 12344455332 1 111 2589999999 999999
Q ss_pred HHHHHHHh
Q 006490 582 SRIIWAAE 589 (643)
Q Consensus 582 ~~l~~~~~ 589 (643)
+++.+.+.
T Consensus 337 ~~v~~~I~ 344 (354)
T 2xtz_A 337 KLVDETLR 344 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 396
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.23 E-value=8.1e-12 Score=128.79 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=79.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceeEEEEeCCCCCcchh-------hhHHhhccC
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELKRA 83 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 83 (643)
..+|+|||.||||||||+|+|++... +.++|.++.. ...+.+...+.++.++||||+..... ..-..++.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~-~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV-TVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC-EEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee-eeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 46899999999999999999999763 3446653332 24445666788999999999864321 122567899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCC
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLR 128 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~D~~ 128 (643)
|++++|+|+.++..... .+..++.... ..+|.+++.||+|..
T Consensus 151 d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999887643222 2344444432 367889999999964
No 397
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=1.6e-13 Score=133.29 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCcEEEEEeCCCCCCcc-ccHHHHHHHHHHhC-CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 533 GVPCLLIASKDDLKPYT-MAVQDSARVTQELG-IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 533 ~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+.|.++|+||+|+.... ...+....+++.++ ..+++++||++| |++++|+.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889999999987542 23445555666553 235899999999 99999999988764
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.23 E-value=2.3e-11 Score=125.59 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CcccceEEEEEEcCC-------------------CcEEEEEEecCCc
Q 006490 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPG-------------------GNKKTLILQEIPE 482 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~--t~~~~~~~~~v~~~g-------------------~~~~~~i~d~~g~ 482 (643)
++|+|+|.||||||||+|+|++........| |....... +..++ ....+.+||++|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998753222223 33333222 23331 1235778999997
Q ss_pred hhhh----hh-hccHHhhccCCEEEEEEeCCC
Q 006490 483 EGVK----KI-LSNKEALASCDVTIFVYDSSD 509 (643)
Q Consensus 483 ~~~~----~~-~~~~~~~~~ad~illv~D~s~ 509 (643)
.... .+ .+....++.||++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 5432 12 123557899999999999985
No 399
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.23 E-value=1.4e-11 Score=127.07 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=83.4
Q ss_pred cCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 006490 55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAG 122 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~ 122 (643)
..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++++... |+..+... ..+.|+|||+
T Consensus 197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEE
Confidence 3457899999999999999999999999999999999999 778888875 66666432 3589999999
Q ss_pred ecccCCCCC---------------c-cchhhhhhhHHHHhh--------cccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 123 CKLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 123 NK~D~~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
||+|+.... . + ..++....+..+| .....+++|||+++.||.++|+++.+.+.
T Consensus 276 NK~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 276 NKTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp ECHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999985321 1 2 3333333222221 11235789999999999999999887754
No 400
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.22 E-value=2.3e-11 Score=139.46 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=84.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------C--CCcccceEEEEEE------------cCCC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG 470 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~----------------~--~t~~~~~~~~~v~------------~~g~ 470 (643)
....+|+|+|.+|+|||||+++|++....... . .|+........+. ..+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34679999999999999999999975221111 0 1222222222222 2334
Q ss_pred cEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 471 ~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
...+.+|||+|+..+... +..+++.+|++|+|+|++++.+++....|.... .. ++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~------~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE------RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT------TCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc------CCCeEEEEECCCcc
Confidence 667889999999888766 788899999999999999998877765554333 32 79999999999986
No 401
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.22 E-value=9.4e-12 Score=128.31 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=89.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCC-CCC-cc------------------cceEEEEEEc----C--
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENY-APT-TG------------------EQYAVNVVDQ----P-- 468 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~-~~t-~~------------------~~~~~~~v~~----~-- 468 (643)
.....|+++|++|+|||||+|+|.+ .+..... ++. +. ....+..... .
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4567899999999999999999973 2211111 111 10 0011111000 0
Q ss_pred ------------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490 469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (643)
Q Consensus 469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv 536 (643)
.....+.++||+|...... .....+|++++|+|++.+..++.+.. .. . +.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~-----~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~ 197 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET-----EVARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVAD 197 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH-----HHHTTCSEEEEEECC------CCCCH---HH--H------HHCS
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH-----HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccC
Confidence 0134678899999644322 24589999999999986543221111 11 1 4688
Q ss_pred EEEEeCCCCCCccccHHHHHHHHH---HhC------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 537 LLIASKDDLKPYTMAVQDSARVTQ---ELG------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 537 ilv~NK~Dl~~~~~~~~~~~~~~~---~~~------~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++|+||+|+..........+++.. .++ .++++++||++| |++++++.|.+.+.
T Consensus 198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999764222222223322 333 345789999999 99999999998664
No 402
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.20 E-value=1.4e-10 Score=115.11 Aligned_cols=111 Identities=13% Similarity=0.026 Sum_probs=68.6
Q ss_pred EEEEEEecCCchhhhhhhc----cHHhhccCCEEEEEEeCCChhhHHHHHH---HH-HHHHHhcCCCCCCCcEEEEEeCC
Q 006490 472 KKTLILQEIPEEGVKKILS----NKEALASCDVTIFVYDSSDEYSWKRTKE---LL-VEVARLGEDSGYGVPCLLIASKD 543 (643)
Q Consensus 472 ~~~~i~d~~g~~~~~~~~~----~~~~~~~ad~illv~D~s~~~s~~~~~~---~~-~~i~~~~~~~~~~~pvilv~NK~ 543 (643)
..+.++||+|......... ....+.. +++++++|++...+...... +. ...... +.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 3678999999866543210 1134566 89999999864322222221 11 111222 78999999999
Q ss_pred CCCCcccc---HH---HHH----H-----------------HHHHhCCC-CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 544 DLKPYTMA---VQ---DSA----R-----------------VTQELGIE-PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 544 Dl~~~~~~---~~---~~~----~-----------------~~~~~~~~-~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
|+...... .+ ... . +.+.++.. +++++||++| |+++++++|.+.+.
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 99764321 11 111 1 12344432 6899999999 99999999988764
No 403
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.20 E-value=3.3e-11 Score=124.36 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred EEEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCC
Q 006490 462 VNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSG 531 (643)
Q Consensus 462 ~~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~ 531 (643)
...+... ...+.+||++|++.+... +..++++++++|+|+|+++ ..+++....|+..+.......
T Consensus 193 ~~~~~~~--~~~l~i~Dt~Gq~~~r~~--w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~- 267 (362)
T 1zcb_A 193 EYDFEIK--NVPFKMVDVGGQRSERKR--WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS- 267 (362)
T ss_dssp EEEEEET--TEEEEEEEECC---------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT-
T ss_pred EEEeeeC--CeEEEEEeccchhhhhhh--HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC-
Confidence 3344443 477889999999988887 8889999999999999999 778999999988887643222
Q ss_pred CCCcEEEEEeCCCCCCcc-----------------ccHHHHHHHHH-----------HhCCCCcEEeeeccC-CHHHHHH
Q 006490 532 YGVPCLLIASKDDLKPYT-----------------MAVQDSARVTQ-----------ELGIEPPIPVSMKSK-DLNNVFS 582 (643)
Q Consensus 532 ~~~pvilv~NK~Dl~~~~-----------------~~~~~~~~~~~-----------~~~~~~~~~vSa~~g-~i~~l~~ 582 (643)
+.|+|+++||+|+..++ ...+.+..++. ..++ .+++|||+++ |++++|+
T Consensus 268 -~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 268 -NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFR 345 (362)
T ss_dssp -TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHH
T ss_pred -CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHH
Confidence 79999999999986422 22344444441 1233 3789999999 9999999
Q ss_pred HHHHHHh
Q 006490 583 RIIWAAE 589 (643)
Q Consensus 583 ~l~~~~~ 589 (643)
++.+.+.
T Consensus 346 ~v~~~i~ 352 (362)
T 1zcb_A 346 DVKDTIL 352 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 404
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.20 E-value=2.3e-11 Score=126.43 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 006490 56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123 (643)
Q Consensus 56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~N 123 (643)
.+++.+.||||+|++.+...+..++++++++|||||+++ ..++++... |+..+... ..+.|+|||+|
T Consensus 214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEE
T ss_pred cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 456899999999999999999999999999999999999 889999874 77777653 36899999999
Q ss_pred cccCCCCCc---cch-------------------------hhhhhhHH-HHhhc----------ccceEEEeCcccCCCh
Q 006490 124 KLDLRGDHN---ATS-------------------------LEEVMGPI-MQQFR----------EIETCVECSATTMIQV 164 (643)
Q Consensus 124 K~D~~~~~~---~~~-------------------------~~~~~~~~-~~~~~----------~~~~~~~~Sa~~~~gi 164 (643)
|+|+...+. +.. ..+....+ ..+|. ....+++|||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999743211 000 01222222 12111 1124679999999999
Q ss_pred hHHHHHHHHHHh
Q 006490 165 PDVFYYAQKAVL 176 (643)
Q Consensus 165 ~~l~~~i~~~~~ 176 (643)
+++|..+.+.+.
T Consensus 373 ~~vF~~v~~~I~ 384 (402)
T 1azs_C 373 RRVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 405
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.18 E-value=6.2e-11 Score=133.96 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-----C--CCC---CC---CCCC---Ce----eeCCcc-----cCCceeEEEEeCCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES-----V--PEK---VP---PVHA---PT----RLPPDF-----YPDRVPVTIIDTSS 68 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~-----~--~~~---~~---~~~~---~~----~~~~~~-----~~~~~~~~i~Dt~G 68 (643)
+|+|+|+.++|||||..+|+... . +.. +. .... .+ .+...+ ..+++.++|+||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 59999999999999999997322 0 000 00 0000 00 011111 12468999999999
Q ss_pred CCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
+.+|......+++-+|++|+|+|+...-..+.. ..++...+. ++|.++++||+|....
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~--~v~~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE--TVWRQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEccccccCc
Confidence 999999999999999999999998776555544 355566665 8999999999998653
No 406
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.17 E-value=5.7e-11 Score=123.44 Aligned_cols=120 Identities=12% Similarity=0.054 Sum_probs=92.0
Q ss_pred EEEEcCCCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcCCCCC
Q 006490 463 NVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSD----------EYSWKRTKELLVEVARLGEDSGY 532 (643)
Q Consensus 463 ~~v~~~g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~ 532 (643)
..+... ...+.+||++|++.+.++ +..++++++++|+|||+++ ..+|+....|+..+.......
T Consensus 210 ~~~~~~--~v~l~iwDtaGQe~~r~~--w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~-- 283 (402)
T 1azs_C 210 TKFQVD--KVNFHMFDVGGQRDERRK--WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR-- 283 (402)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGG--GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS--
T ss_pred EEeecC--Cccceecccchhhhhhhh--hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC--
Confidence 334444 377889999999999888 8999999999999999999 889999999999887653222
Q ss_pred CCcEEEEEeCCCCCCccc---c----------------------------HHHHHHHH-----HHh--------CCCCcE
Q 006490 533 GVPCLLIASKDDLKPYTM---A----------------------------VQDSARVT-----QEL--------GIEPPI 568 (643)
Q Consensus 533 ~~pvilv~NK~Dl~~~~~---~----------------------------~~~~~~~~-----~~~--------~~~~~~ 568 (643)
+.|++||+||+|+...+. . .+.+..++ +.. ++ .++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~ 362 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPH 362 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEE
Confidence 799999999999854322 1 13344442 221 22 367
Q ss_pred EeeeccC-CHHHHHHHHHHHHh
Q 006490 569 PVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 569 ~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+|||+++ ||+++|..+.+.+.
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHH
Confidence 9999999 99999999888764
No 407
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.17 E-value=2.8e-11 Score=117.32 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=86.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----C------------Cee--e--CCccc--------------C
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH----A------------PTR--L--PPDFY--------------P 56 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~----~------------~~~--~--~~~~~--------------~ 56 (643)
+..+|+|+|++|||||||+++|+...+.....++. . ... . ...+. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 45799999999999999999999764322111100 0 000 0 00000 1
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchh
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~ 136 (643)
.+..+.++|++|..... ..+-...+.++.|+|......... ..... . +.|.++|+||+|+...... ..
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~-~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVGA-DI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHTC-CH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhHH-HH
Confidence 12357777777742111 111123456677777532211110 01111 2 5789999999998643211 12
Q ss_pred hhhhhHHHHhhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+....+...++...+++++||++|.|++++|+.+.+.+.
T Consensus 185 -~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 185 -KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp -HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 223344444433347999999999999999999887653
No 408
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.13 E-value=5.8e-10 Score=121.64 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=79.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCC-----CcccceEEEEEEcCCCcEEEEEEecC
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFS-----------------ENYAP-----TTGEQYAVNVVDQPGGNKKTLILQEI 480 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~-----------------~~~~~-----t~~~~~~~~~v~~~g~~~~~~i~d~~ 480 (643)
.-+|+|+|..++|||||..+|+...-. ..+.+ .++.......+.+ ...++.++||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeCC
Confidence 347999999999999999999732110 01111 1111122333444 34678889999
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
|+..|..- ..++++-+|++|+|+|+.++..-+....| ....++ ++|.++++||+|...
T Consensus 109 GHvDF~~E--v~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~------~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSED--TYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR------ATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHH--HHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCCEEEEEECTTSCC
T ss_pred CcHHHHHH--HHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh------CCceEEEEecccchh
Confidence 99887654 67889999999999999998764544444 444554 899999999999865
No 409
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=1.8e-10 Score=118.30 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc------CCC--CCCCCCCCC-------Ce-eeCC---------------------
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAAT------ESV--PEKVPPVHA-------PT-RLPP--------------------- 52 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~------~~~--~~~~~~~~~-------~~-~~~~--------------------- 52 (643)
.+...|+|+|++|||||||+|.+++ ... ....+.... .. ++..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4556899999999999999999983 321 111111000 00 0000
Q ss_pred ---------cccCCceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 006490 53 ---------DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123 (643)
Q Consensus 53 ---------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N 123 (643)
.+...+..+.|+||+|+..... .....+|++++|+|+......+.+. ..+. ..|.++|+|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEE
Confidence 0122577899999999865322 3457899999999976443221111 1111 246678889
Q ss_pred cccCCCCCccchhhhhhhHHHHhh---c-----ccceEEEeCcccCCChhHHHHHHHHHH
Q 006490 124 KLDLRGDHNATSLEEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV 175 (643)
Q Consensus 124 K~D~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 175 (643)
|+|+...... .....+.+...+ . ...+++.+||+++.|++++++.+.+..
T Consensus 202 K~Dl~~~~~~--s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 202 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred chhccCchhH--HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9997542211 111122222211 1 023688999999999999999888754
No 410
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=6.1e-10 Score=114.23 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=88.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCC-CC-ccc----------------ceEEEEEEcC--------
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLE------RPFSENYA-PT-TGE----------------QYAVNVVDQP-------- 468 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~-~t-~~~----------------~~~~~~v~~~-------- 468 (643)
.....++|+|++|||||||+|.+.+ ++...... ++ +.. +.......++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4456899999999999999999983 33221111 11 000 0001111111
Q ss_pred ------------CCcEEEEEEecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE
Q 006490 469 ------------GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 536 (643)
Q Consensus 469 ------------g~~~~~~i~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv 536 (643)
.....+.++||+|...-. ......+|++++|+|++.+...+.+... +. ..|.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~--------~~~~ 196 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVADLTDFFLVLMLPGAGDELQGIKKG---IF--------ELAD 196 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHHTTSSEEEEEECSCC------CCTT---HH--------HHCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh--------cccc
Confidence 023467789999964321 2234789999999998755322111111 11 2456
Q ss_pred EEEEeCCCCCCccc-cHHHHHHHHHHh---C------CCCcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 537 LLIASKDDLKPYTM-AVQDSARVTQEL---G------IEPPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 537 ilv~NK~Dl~~~~~-~~~~~~~~~~~~---~------~~~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
++|+||+|+..... .....+.+.... . .++++.+||+++ |++++++.|.+...
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 77889999754221 122233333322 2 346899999999 99999999988764
No 411
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.03 E-value=2.5e-10 Score=112.64 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCCCc-chhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHH
Q 006490 67 SSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ 145 (643)
Q Consensus 67 ~G~~~-~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~ 145 (643)
||+.. ........+..+|+++.|+|+.++.+..... +. . . ++|.++|.||+|+..... . +....+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~---~-~~~~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT---T-KKWVEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH---H-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH---H-HHHHHHHH
Confidence 55432 3345668899999999999999886654321 11 1 1 799999999999975211 1 11112222
Q ss_pred hhcccceEEEeCcccCCChhHHHH
Q 006490 146 QFREIETCVECSATTMIQVPDVFY 169 (643)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~gi~~l~~ 169 (643)
+.+ .++ .+||+++.|++++++
T Consensus 73 ~~g--~~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 73 KQG--KRV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp HTT--CCE-EECCTTSCHHHHHHH
T ss_pred HcC--CeE-EEECCCCcCHHHHHH
Confidence 222 246 999999999887664
No 412
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.98 E-value=2.4e-10 Score=127.27 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCC---CCCCC-Ccc------------cceEEEEEEcCCCcEEEEEEecCCchhhh
Q 006490 425 RCLLFGPQNAGKSALLNSFLER--PFS---ENYAP-TTG------------EQYAVNVVDQPGGNKKTLILQEIPEEGVK 486 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~--~~~---~~~~~-t~~------------~~~~~~~v~~~g~~~~~~i~d~~g~~~~~ 486 (643)
+|+|+|...+|||||..+|+.. ... .+... +.. .......+.+ ...++.++||+|+..|.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSSTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHHH
Confidence 5899999999999999999732 111 11111 111 1111222333 34566789999998876
Q ss_pred hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 487 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 487 ~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
.- ....++-+|++|+|+|+.++..-+. ...+..+.++ ++|.++++||+|...
T Consensus 82 ~E--v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~------~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AE--VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM------GIPTIFFINKIDQNG 133 (638)
T ss_dssp HH--HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH------TCSCEECCEECCSSS
T ss_pred HH--HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc------CCCeEEEEecccccc
Confidence 64 6788999999999999998865343 3444444555 899999999999864
No 413
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.94 E-value=5.5e-10 Score=115.51 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=52.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCC---------------cEEEEEEecCCchhh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV 485 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~---------------~~~~~i~d~~g~~~~ 485 (643)
...++|+|+|.||||||||+|+|++..+.....|+++.....-.+.+++. ...+.+||++|....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999998764333354443344445555532 124778999997653
Q ss_pred hh----h-hccHHhhccCCEEEEEEeCCChhhH
Q 006490 486 KK----I-LSNKEALASCDVTIFVYDSSDEYSW 513 (643)
Q Consensus 486 ~~----~-~~~~~~~~~ad~illv~D~s~~~s~ 513 (643)
.+ + .....+++.+|++++|+|+++..++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 32 1 1246788999999999999865443
No 414
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.88 E-value=2.5e-09 Score=108.09 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=74.8
Q ss_pred chhhhhhhccHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc--HHHHHHH
Q 006490 482 EEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARV 558 (643)
Q Consensus 482 ~~~~~~~~~~~~~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~--~~~~~~~ 558 (643)
++++..+ ...++.++|++++|+|++++. ++..+.+|+..+... ++|+++|+||+|+.++... .+...++
T Consensus 66 ~er~~~l--~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLL--IRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp CCCSCEE--ETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CChHHHH--hHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 4455555 456899999999999999985 888888998877653 8999999999999875421 2344556
Q ss_pred HHHhCCCCcEEeeeccC-CHHHHHHHHH
Q 006490 559 TQELGIEPPIPVSMKSK-DLNNVFSRII 585 (643)
Q Consensus 559 ~~~~~~~~~~~vSa~~g-~i~~l~~~l~ 585 (643)
.+..+++ ++++||++| |++++++.+.
T Consensus 138 ~~~~g~~-~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 138 YRDAGYD-VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred HHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence 6677875 999999999 9999987754
No 415
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=1.8e-08 Score=104.47 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=58.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcccceEEEEEEcCCCc---------------EEEEEEecCCchh
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEG 484 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~-~~t~~~~~~~~~v~~~g~~---------------~~~~i~d~~g~~~ 484 (643)
....+|+|+|+||||||||+|+|++.....+. .|.++.....-.+.++|.+ ..+.++|++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 45679999999999999999999998763333 3533332333334445311 3467899998432
Q ss_pred hh----hh-hccHHhhccCCEEEEEEeCCC
Q 006490 485 VK----KI-LSNKEALASCDVTIFVYDSSD 509 (643)
Q Consensus 485 ~~----~~-~~~~~~~~~ad~illv~D~s~ 509 (643)
.. .+ ......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 01 124567789999999999874
No 416
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.84 E-value=5.1e-08 Score=110.13 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=77.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCC-Cc------------ccceEEEEEEcCC-----CcEEEEEEe
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPF-----SENYAP-TT------------GEQYAVNVVDQPG-----GNKKTLILQ 478 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~-----~~~~~~-t~------------~~~~~~~~v~~~g-----~~~~~~i~d 478 (643)
+.-+|+|+|...+|||||..+|+...- ..+... +. +.......+.+.+ +...+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 345799999999999999999973210 000000 11 1111122222322 246788999
Q ss_pred cCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC
Q 006490 479 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 547 (643)
Q Consensus 479 ~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~ 547 (643)
|+|+..|..- ...+++-+|++|+|+|+..+..-+...-| ....+. ++|.++++||+|...
T Consensus 92 TPGHvDF~~E--v~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~------~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIE--VERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY------GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH------TCCEEEEEECSSSTT
T ss_pred CCCCcccHHH--HHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc------CCCeEEEEccccccC
Confidence 9999887654 67889999999999999998764544444 444444 899999999999853
No 417
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.81 E-value=3.3e-09 Score=109.76 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCee-eCCcccC---------------CceeEEEEeCCCCCc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTR-LPPDFYP---------------DRVPVTIIDTSSSLE 71 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~~-~~~~~~~~~~~-~~~~~~~---------------~~~~~~i~Dt~G~~~ 71 (643)
....++|+|+|.||||||||+|+|++..+. .++|.++.... ....+.. -...+.+|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 355689999999999999999999988642 22333221111 1011111 023599999999876
Q ss_pred chh-------hhHHhhccCCEEEEEEECCCcccHHH
Q 006490 72 NKG-------KLNEELKRADAVVLTYACNQQSTLSR 100 (643)
Q Consensus 72 ~~~-------~~~~~~~~ad~il~v~d~~~~~s~~~ 100 (643)
+.. ....+++++|++++|+|+.+..++.+
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 443 34577899999999999876555443
No 418
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=5e-09 Score=105.13 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=57.4
Q ss_pred hhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhcc-cceE
Q 006490 75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETC 153 (643)
Q Consensus 75 ~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (643)
+....+..+|.+++|+|+..+........+++...... ++|.++|.||+|+..... ..+..+.+.+.|.. -.++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCCE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCCCeE
Confidence 34457889999999999987654444333455444444 899999999999976421 00112333333321 1368
Q ss_pred EEeCcccCCChhHHH
Q 006490 154 VECSATTMIQVPDVF 168 (643)
Q Consensus 154 ~~~Sa~~~~gi~~l~ 168 (643)
+.+||.++.|+++|+
T Consensus 154 ~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 154 YLTSSKDQDSLADII 168 (307)
T ss_dssp EECCHHHHTTCTTTG
T ss_pred EEEecCCCCCHHHHH
Confidence 999999888876543
No 419
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=6.8e-08 Score=100.19 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee-eCCcccC------------C---ceeEEEEeCCCCC
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEKVPPVHAPTR-LPPDFYP------------D---RVPVTIIDTSSSL 70 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~~~~--~~~~~~~~~~~~-~~~~~~~------------~---~~~~~i~Dt~G~~ 70 (643)
..+..+|+|+|+||||||||+|+|++... +.++|.++.... -...+.. . +..+.+|||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45568999999999999999999999764 333444222111 1111111 0 1358999999965
Q ss_pred cc-------hhhhHHhhccCCEEEEEEECCC
Q 006490 71 EN-------KGKLNEELKRADAVVLTYACNQ 94 (643)
Q Consensus 71 ~~-------~~~~~~~~~~ad~il~v~d~~~ 94 (643)
.. .......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 2234466789999999999864
No 420
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.63 E-value=3.4e-08 Score=91.40 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=65.6
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEEEEeCC-CCCCccccHHHHHH
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS--GYGVPCLLIASKD-DLKPYTMAVQDSAR 557 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~~~pvilv~NK~-Dl~~~~~~~~~~~~ 557 (643)
|++.+..+ |..|+.++|++|||+|++|...++ .+..+.++....... ..+.|++|.+||. |+... . ...+
T Consensus 111 GQ~klRpl--Wr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-m---s~~E 183 (227)
T 3l82_B 111 SRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-M---PCFY 183 (227)
T ss_dssp ------CC--HHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-C---CHHH
T ss_pred cHHHHHHH--HHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-C---CHHH
Confidence 67777777 899999999999999999875433 333333332221111 1289999999995 67542 1 2334
Q ss_pred HHHHhCCC------CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 558 VTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 558 ~~~~~~~~------~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
+.+.+++. .+..|||++| |+.+-++||.+.+.
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 44444432 3789999999 99999999988765
No 421
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.63 E-value=2e-07 Score=95.34 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCCCccchhhhhhhHHHHhhccc-ceEEEeC
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVECS 157 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S 157 (643)
.+.++|.+++|... .+........+++-..... ++|.+||.||+|+..... .+..+.+...|... .+++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEEe
Confidence 46789999988765 4543333333455444445 789999999999975311 11133343433221 3689999
Q ss_pred cccCCChhHHH
Q 006490 158 ATTMIQVPDVF 168 (643)
Q Consensus 158 a~~~~gi~~l~ 168 (643)
|.++.|++++.
T Consensus 200 a~~~~gl~~L~ 210 (358)
T 2rcn_A 200 SHTQDGLKPLE 210 (358)
T ss_dssp TTTTBTHHHHH
T ss_pred cCCCcCHHHHH
Confidence 99999987654
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=3.8e-08 Score=105.41 Aligned_cols=152 Identities=12% Similarity=0.028 Sum_probs=88.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEEcC--------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVDQP-------------- 468 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~------~~~~~~~~~~t~~-------------~~~~~~~v~~~-------------- 468 (643)
.+..|+|+|.+||||||++++|. |.+...+...+.+ ....+....+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 5543322211100 01111111010
Q ss_pred -CCcEEEEEEecCCchhhh-----hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcE-EEEEe
Q 006490 469 -GGNKKTLILQEIPEEGVK-----KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIAS 541 (643)
Q Consensus 469 -g~~~~~~i~d~~g~~~~~-----~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pv-ilv~N 541 (643)
.....++++||+|..... .+.+... +..+|.+++|+|++.+.. .......+.. .+|+ ++|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~---~~~~a~~~~~-------~~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQA---CEAQAKAFKD-------KVDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTT---HHHHHHHHHH-------HHCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEecccccc---HHHHHHHHHh-------hcCceEEEEe
Confidence 023467889999964321 1111111 237999999999987643 2222223322 2564 78899
Q ss_pred CCCCCCccccHHHHHHHHHHhCCC-----------------CcEEeeeccC-C-HHHHHHHHHHH
Q 006490 542 KDDLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA 587 (643)
Q Consensus 542 K~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSa~~g-~-i~~l~~~l~~~ 587 (643)
|+|....... ...+...++.+ +.+++|+++| | +.++++++.+.
T Consensus 249 K~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9998753221 22233344332 3456899999 8 99999998866
No 423
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=1.8e-08 Score=107.89 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCC--CCCC---CCCC----------CCeeeCC---------------cc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PEKV---PPVH----------APTRLPP---------------DF 54 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~------~~~~--~~~~---~~~~----------~~~~~~~---------------~~ 54 (643)
+...|+|+|.+||||||++++|. +.+. +... +... +...... .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998 4431 1110 0000 0000000 01
Q ss_pred cCCceeEEEEeCCCCCcchh-hhH---Hh--hccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEecccC
Q 006490 55 YPDRVPVTIIDTSSSLENKG-KLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDL 127 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~D~ 127 (643)
...++.+.|+||||...... ... .. +..+|.+++|+|+........ ....+.. .+|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence 11567899999999764221 111 11 237899999999877543221 2333333 2575 889999998
Q ss_pred CCCCccchhhhhhhHHHHhhc----------------ccceEEEeCcccCCC-hhHHHHHHHHH
Q 006490 128 RGDHNATSLEEVMGPIMQQFR----------------EIETCVECSATTMIQ-VPDVFYYAQKA 174 (643)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 174 (643)
...... ...+...++ .+.+.+.+|+..|.| +.+|++.+.+.
T Consensus 253 ~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 743221 111112221 112334579999999 99998887654
No 424
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.54 E-value=7.9e-08 Score=88.95 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=66.2
Q ss_pred CCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHH---HHHHHhc--CCCCcEEEEEecc-cCCCCCccchhhhhh
Q 006490 67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEVM 140 (643)
Q Consensus 67 ~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~pvilv~NK~-D~~~~~~~~~~~~~~ 140 (643)
+|+......|..|+.++|++|||+|.+++...+ ...++ ...+... -.+.|++|.+||. |+...-. ..+..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams---~~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC---HHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC---HHHHH
Confidence 477778889999999999999999999885544 33233 3333322 1478999999995 6754322 22222
Q ss_pred hHHHH-hhcccceEEEeCcccCCChhHHHHHHHHHHh
Q 006490 141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 141 ~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 176 (643)
+.+.. .+..--.+..|||.+|+|+.+-++|+.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 22111 1122225799999999999999999987654
No 425
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.49 E-value=4.4e-07 Score=94.65 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCcccceEEEEEEcCCCcEEEEEEecCCchhh-------h-----
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------K----- 486 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~----~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~-------~----- 486 (643)
.++++|+|++|+|||||+|.|+|..+..... +..............+....+.++|++|-... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999999975432111 11111111122233322335667887763211 0
Q ss_pred ---hhhccHH----------hhccC--C-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccc
Q 006490 487 ---KILSNKE----------ALASC--D-VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 550 (643)
Q Consensus 487 ---~~~~~~~----------~~~~a--d-~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~ 550 (643)
.+..... .+.++ | +++++.|+..+.+-.+ ..++..+. . +.|+|+|.||+|......
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~-----~--~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD-----S--KVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC-----S--CSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh-----h--CCCEEEEEcchhccchHH
Confidence 0000000 11223 3 4667778776544222 22333322 1 799999999999887554
Q ss_pred cHHHHHHHHH---HhCCCCcEEeee
Q 006490 551 AVQDSARVTQ---ELGIEPPIPVSM 572 (643)
Q Consensus 551 ~~~~~~~~~~---~~~~~~~~~vSa 572 (643)
.......+.+ ..|+. ++++|.
T Consensus 194 ~~~l~~~I~~~L~~~gi~-I~~is~ 217 (427)
T 2qag_B 194 LTKFKIKITSELVSNGVQ-IYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHBTTBCC-CCCCC-
T ss_pred HHHHHHHHHHHHHHcCCc-EEecCC
Confidence 4333333333 23444 677774
No 426
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.46 E-value=2e-06 Score=89.81 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=87.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCcccCCc-eeEEEEeCCCCCcchhhhHH-----hhccC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFYPDR-VPVTIIDTSSSLENKGKLNE-----ELKRA 83 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~-----~~~~a 83 (643)
..|+|+|++|||||||+|.|++...... ..+....++....+.... -.+.++|++|.......... .+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4799999999999999999998432111 111011111111111111 25899999997532222222 23445
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC-------CCcc--chhhhhhhHHHH----hhc-c
Q 006490 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR-E 149 (643)
Q Consensus 84 d~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~-------~~~~--~~~~~~~~~~~~----~~~-~ 149 (643)
+.+++ +|.... .-..+ .+...+... ++|+++|.||.|+.- -+.. ....+.+..+.. +.+ .
T Consensus 150 ~~~~~-lS~G~~-~kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRF-KKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCC-CHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCc-cHHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66665 775531 12222 355556555 789999999999641 1111 011222233321 111 1
Q ss_pred cceEEEeCc--ccCCChhHHHHHHHHHHh
Q 006490 150 IETCVECSA--TTMIQVPDVFYYAQKAVL 176 (643)
Q Consensus 150 ~~~~~~~Sa--~~~~gi~~l~~~i~~~~~ 176 (643)
....+.+|+ ..+.|++++.+.+.+.+.
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 235789999 567789999999887753
No 427
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.46 E-value=3.1e-07 Score=95.21 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=72.4
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHH
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSA 556 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~ 556 (643)
..+.+.++ ...+.+.+|++++|+|++++. ..|...+.+... ++|+++|+||+|+...... .+...
T Consensus 55 ~~e~f~~~--l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~----~~p~ilV~NK~DL~~~~~~~~~~~~~l~ 123 (368)
T 3h2y_A 55 TDDDFLRI--LNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWMR 123 (368)
T ss_dssp -CHHHHHH--HHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS----SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred CHHHHHHH--HHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC----CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence 35567776 566777888999999999853 455556665543 7899999999999764432 23334
Q ss_pred HHHHHhCCC--CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 557 ~~~~~~~~~--~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.+++..|+. +++++||++| |++++++.+.+...
T Consensus 124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 446777873 5899999999 99999999987653
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=2.3e-07 Score=91.80 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=65.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCCCCCeeeCCcccCC--ceeEEEEeCCCCCcchh------
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATESVPE---------KVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLENKG------ 74 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~------ 74 (643)
.++++|+|++|+|||||+|.|++..... ..+.......+...+... ...++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998753211 111111111111111111 23689999999753110
Q ss_pred hhH----------------------HhhccCCEEEEEEECC-CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 006490 75 KLN----------------------EELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129 (643)
Q Consensus 75 ~~~----------------------~~~~~ad~il~v~d~~-~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~ 129 (643)
... ..+..+++.++++|.. .+.+..+ ..++..+... .++|+|.||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~~---~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSKV---VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHTT---SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHhc---CcEEEEEeccccCC
Confidence 000 1234469999999843 3333333 3466666543 89999999999764
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=2.3e-07 Score=96.87 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCee--eCCcccCCc--eeEEEEeCCCCCcchh------------
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTR--LPPDFYPDR--VPVTIIDTSSSLENKG------------ 74 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~-~~~-~~~~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~------------ 74 (643)
++++|+|++|+|||||+|.|++..+... ... ..+.+. +...+...+ ..++++|++|......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 3599999999999999999998764321 111 111222 222222222 3689999999764211
Q ss_pred --hhHHhh-------------ccC--C-EEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 006490 75 --KLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130 (643)
Q Consensus 75 --~~~~~~-------------~~a--d-~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~~~ 130 (643)
.+..++ .++ | +++|+.|.....+..++ .+++.+. .+.|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 111111 122 3 36666675544443332 3555554 47999999999998653
No 430
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.39 E-value=1.9e-06 Score=89.95 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=87.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------CCcccceEEEEEEcCCCcEEEEEEecCCchh----hhhhhcc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILSN 491 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~------~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~----~~~~~~~ 491 (643)
....++|+|++|||||||+|.|+|-....... +++... .....+ ......++|++|... ..... .
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~---~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L-~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER---HPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL-E 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC---EEEECS-SCTTEEEEECCCGGGSSCCHHHHH-H
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE---Eecccc-ccCCeeehHhhcccchHHHHHHHH-H
Confidence 34579999999999999999999954322111 111111 122222 222456688887421 11111 1
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCC------------ccccHHHHHHHH
Q 006490 492 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP------------YTMAVQDSARVT 559 (643)
Q Consensus 492 ~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~------------~~~~~~~~~~~~ 559 (643)
...+...+.+++ ++...+. ++...+...+... ++|+++|.||.|+.- .....+.+.++.
T Consensus 143 ~~~L~~~~~~~~-lS~G~~~--kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 143 KMKFYEYDFFII-ISATRFK--KNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HTTGGGCSEEEE-EESSCCC--HHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HcCCCccCCeEE-eCCCCcc--HHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 112345566665 7776321 2222334444443 789999999999741 111233344443
Q ss_pred H----HhC--CCCcEEeee--ccC-CHHHHHHHHHHHHh
Q 006490 560 Q----ELG--IEPPIPVSM--KSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 560 ~----~~~--~~~~~~vSa--~~g-~i~~l~~~l~~~~~ 589 (643)
. ..+ ...++.+|+ ..+ |++++.+.+.+.+.
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1 223 345789999 566 79999999988763
No 431
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.36 E-value=1.8e-07 Score=91.03 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred CCchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHH---HHH-HhcCCCCCCCcEEEEEeC-CCCCCccccHHH
Q 006490 480 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLV---EVA-RLGEDSGYGVPCLLIASK-DDLKPYTMAVQD 554 (643)
Q Consensus 480 ~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~---~i~-~~~~~~~~~~pvilv~NK-~Dl~~~~~~~~~ 554 (643)
.|++.+..+ +..|+.++|++|+|+|++|.+.++ ....+. .+. +..... +.|++|.+|| -|+... . .
T Consensus 195 GGQ~~lRpl--Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~--~apLLVfANKkQDlp~A-m---s 265 (312)
T 3l2o_B 195 GSRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS--GRPLLVLSCISQGDVKR-M---P 265 (312)
T ss_dssp --CCCCCHH--HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCT--TCCEEEEEEESSTTSCB-C---C
T ss_pred CCHHHHHHH--HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcC--CCeEEEEeCCcccccCC-C---C
Confidence 466777777 889999999999999999876433 222222 121 111011 8999999997 577542 1 2
Q ss_pred HHHHHHHhCCC------CcEEeeeccC-CHHHHHHHHHHHHhC
Q 006490 555 SARVTQELGIE------PPIPVSMKSK-DLNNVFSRIIWAAEH 590 (643)
Q Consensus 555 ~~~~~~~~~~~------~~~~vSa~~g-~i~~l~~~l~~~~~~ 590 (643)
..++.+.+++. .+..|||++| |+.+-+++|.+.+..
T Consensus 266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 33444444432 3789999999 999999999998753
No 432
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.33 E-value=5.8e-07 Score=93.26 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=70.7
Q ss_pred CchhhhhhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc----HHHHH
Q 006490 481 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----VQDSA 556 (643)
Q Consensus 481 g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~----~~~~~ 556 (643)
.++.+.++ ...++..++++++|+|++++.+ .|...+.+... ++|+++|+||+|+...... .+...
T Consensus 57 ~~e~f~~~--L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 57 DDDDFLSM--LHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp --CHHHHH--HHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CHHHHHHH--HHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 46677776 4566689999999999999753 34444444433 7899999999999865332 23333
Q ss_pred HHHHHhCCC--CcEEeeeccC-CHHHHHHHHHHHHh
Q 006490 557 RVTQELGIE--PPIPVSMKSK-DLNNVFSRIIWAAE 589 (643)
Q Consensus 557 ~~~~~~~~~--~~~~vSa~~g-~i~~l~~~l~~~~~ 589 (643)
.+.+..|+. +++.+||++| |++++++.+.+...
T Consensus 126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445666773 5899999999 99999999987664
No 433
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.32 E-value=1e-06 Score=87.14 Aligned_cols=135 Identities=16% Similarity=0.235 Sum_probs=69.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------C-CcccceEEEEEEcCCCcEEEEEEecCCchh---------
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--------P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------- 484 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~--------~-t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~--------- 484 (643)
.++++|+|++|+|||||+|.|+|........ + +............++-...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 3789999999999999999999854332211 1 111111111111111222455677765210
Q ss_pred -hhhhhc----------------cHHhhccCCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCC
Q 006490 485 -VKKILS----------------NKEALASCDVTIFVYDSS-DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 546 (643)
Q Consensus 485 -~~~~~~----------------~~~~~~~ad~illv~D~s-~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~ 546 (643)
...... ..-.+..+++.++++|.. .+.+-. ....+..+.+ ..++|+|+||+|..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~-------~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSK-------VVNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHT-------TSEEEEEETTGGGS
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHh-------cCcEEEEEeccccC
Confidence 111000 011234579999999965 443322 2334444433 47999999999988
Q ss_pred CccccH---HHHHHHHHHhCCC
Q 006490 547 PYTMAV---QDSARVTQELGIE 565 (643)
Q Consensus 547 ~~~~~~---~~~~~~~~~~~~~ 565 (643)
...... ..+.......+..
T Consensus 154 t~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 154 TLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCcc
Confidence 754432 2333334455655
No 434
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.29 E-value=7.8e-07 Score=86.54 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=71.2
Q ss_pred CCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHH---HHHHHHhc--CCCCcEEEEEec-ccCCCCCccchhhhh
Q 006490 66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY---WLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEV 139 (643)
Q Consensus 66 t~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~---~~~~l~~~--~~~~pvilv~NK-~D~~~~~~~~~~~~~ 139 (643)
.+|+......|..|+.++|++|||+|.+|++.++ ...+ +...+... -.+.|++|.+|| .|+...-. ..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHH
Confidence 4677888889999999999999999999887544 2222 22334221 248999999997 57754322 1222
Q ss_pred hhHHHH-hhcccceEEEeCcccCCChhHHHHHHHHHHhC
Q 006490 140 MGPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH 177 (643)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 177 (643)
.+.+.. .+..--.+..|||.+|+|+.+-++|+.+.+..
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 222111 11222257999999999999999999987643
No 435
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.16 E-value=2.7e-06 Score=84.65 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=64.5
Q ss_pred EecCCchhhhhhhccHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHH
Q 006490 477 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD 554 (643)
Q Consensus 477 ~d~~g~~~~~~~~~~~~~~~~ad~illv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~ 554 (643)
-+.+|+. .....+....+..+|+++.|+|+.+|.+.. .+..++ . ++|+++|+||+|+.+..... .
T Consensus 4 ~w~PGhm-~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~----~kp~ilVlNK~DL~~~~~~~-~ 70 (282)
T 1puj_A 4 QWFPGHM-AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K----NKPRIMLLNKADKADAAVTQ-Q 70 (282)
T ss_dssp -----CT-THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S----SSCEEEEEECGGGSCHHHHH-H
T ss_pred cCCchHH-HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C----CCCEEEEEECcccCCHHHHH-H
Confidence 3456653 222333677899999999999999987653 222222 2 79999999999998732211 1
Q ss_pred HHHHHHHhCCCCcEEeeeccC-CHHHHHHHHHHHH
Q 006490 555 SARVTQELGIEPPIPVSMKSK-DLNNVFSRIIWAA 588 (643)
Q Consensus 555 ~~~~~~~~~~~~~~~vSa~~g-~i~~l~~~l~~~~ 588 (643)
..++.+..+++ ++++||+++ |++++++.+.+.+
T Consensus 71 ~~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 71 WKEHFENQGIR-SLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHH
Confidence 12222334664 899999999 9999998877754
No 436
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.11 E-value=1.1e-05 Score=84.53 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=77.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCcc-------------cceEEEEEEcCC-------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTG-------------EQYAVNVVDQPG------------- 469 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~~t~~-------------~~~~~~~v~~~g------------- 469 (643)
.+..|+++|.+||||||++..|.. .+.......+.+ .+..+.......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999973 222111111110 011111111100
Q ss_pred --CcEEEEEEecCCchhhh----hhhccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490 470 --GNKKTLILQEIPEEGVK----KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543 (643)
Q Consensus 470 --~~~~~~i~d~~g~~~~~----~~~~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~ 543 (643)
....++++||+|..... .-.+.......+|.+++|+|++.+.. .......+.+. -.+..+|+||+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~------~~i~gVIlTKl 249 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA------TPIGSIIVTKL 249 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS------CTTEEEEEECC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh------CCCeEEEEECC
Confidence 12467789999842211 11112234457899999999987633 23333344332 34567889999
Q ss_pred CCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 544 DLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
|..... ..+..+....+.+ +.+++.
T Consensus 250 D~~~~g---G~~ls~~~~~g~P-I~fig~ 274 (443)
T 3dm5_A 250 DGSAKG---GGALSAVAATGAP-IKFIGT 274 (443)
T ss_dssp SSCSSH---HHHHHHHHTTCCC-EEEEEC
T ss_pred CCcccc---cHHHHHHHHHCCC-EEEEEc
Confidence 987632 2344455566765 666665
No 437
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.07 E-value=3.6e-06 Score=91.61 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc-c-----cCCceeEEEEeCCCCCc
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD-F-----YPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~i~Dt~G~~~ 71 (643)
.+..+|+|+|.||||||||+|+|++....-..++++...+.... + ...+..+.++||||+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45578999999999999999999998743233433322221111 1 23567899999999864
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=2.8e-06 Score=89.57 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------C--CCCCC---CC------------------CCCCeeeCCcc------cC
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAATE------S--VPEKV---PP------------------VHAPTRLPPDF------YP 56 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~~~------~--~~~~~---~~------------------~~~~~~~~~~~------~~ 56 (643)
...|+|+|.+||||||+++.|... + ++... +. ..+++.-+..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 356999999999999999998762 1 11100 00 00010100000 02
Q ss_pred CceeEEEEeCCCCCcchhh-hH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCC-c-EEEEEecccCC
Q 006490 57 DRVPVTIIDTSSSLENKGK-LN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR 128 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~-~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-vilv~NK~D~~ 128 (643)
.++.+.|+||||....... .. ..+..+|.+++|+|+..... ... ....+. ... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~--~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGI--QAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHH--HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHH--HHHHHh---hcccCCeEEEEeCCCCc
Confidence 5678999999997643211 11 11236899999999765432 111 222222 245 6 88999999985
Q ss_pred C
Q 006490 129 G 129 (643)
Q Consensus 129 ~ 129 (643)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 3
No 439
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.04 E-value=3.4e-05 Score=80.82 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=79.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------CCC--CC-C-C-CC----------CCCCeeeCCc---------------c
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAAT------ESV--PE-K-V-PP----------VHAPTRLPPD---------------F 54 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~------~~~--~~-~-~-~~----------~~~~~~~~~~---------------~ 54 (643)
+...|+++|.+||||||++..|.. .+. .. + + ++ ..+....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357799999999999999998873 221 00 1 0 00 0000011000 0
Q ss_pred cCCceeEEEEeCCCCCcchh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCC
Q 006490 55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~~ 128 (643)
...++.+.|+||+|...... ... .....+|.+++|+|+........ ....+.+. -.+..+|.||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence 01357899999999654221 111 22446899999999876433222 23333333 34567899999986
Q ss_pred CCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
... ..+..+....+ .|+..++. |+++++|
T Consensus 253 ~~g------G~~ls~~~~~g--~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AKG------GGALSAVAATG--APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSH------HHHHHHHHTTC--CCEEEEEC--SSSTTCE
T ss_pred ccc------cHHHHHHHHHC--CCEEEEEc--CCChHHh
Confidence 421 22233334444 25555654 8888654
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.03 E-value=1.8e-06 Score=91.07 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC------CCCCCCC----C----------------------Ccccc--eEEEEEEcCC
Q 006490 424 FRCLLFGPQNAGKSALLNSFLER------PFSENYA----P----------------------TTGEQ--YAVNVVDQPG 469 (643)
Q Consensus 424 ~ki~ivG~~nvGKSSLln~l~~~------~~~~~~~----~----------------------t~~~~--~~~~~v~~~g 469 (643)
..|+++|++||||||+++.|... ....+.. + ++.+. .....+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~- 178 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF- 178 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh-
Confidence 46999999999999999999863 1111000 0 11110 000001111
Q ss_pred CcEEEEEEecCCchhhhh-hh---ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCC-c-EEEEEeCC
Q 006490 470 GNKKTLILQEIPEEGVKK-IL---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGV-P-CLLIASKD 543 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~-~~---~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~-p-vilv~NK~ 543 (643)
....++++||+|...... +. .....+..+|.+++|+|++.+.. .......+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-------AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-------TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-------cccCCeEEEEeCC
Confidence 234578899999543211 11 11222347999999999987632 2222222221 45 6 78999999
Q ss_pred CCCCccccHHHHHHHHHHhCCC-----------------CcEEeeeccC-C-HHHHHHHHHHH
Q 006490 544 DLKPYTMAVQDSARVTQELGIE-----------------PPIPVSMKSK-D-LNNVFSRIIWA 587 (643)
Q Consensus 544 Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~vSa~~g-~-i~~l~~~l~~~ 587 (643)
|..... .....+....+.+ |..++|+..| | +..+++.+.+.
T Consensus 249 D~~~~~---g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 249 DGSAKG---GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp SSCSTT---HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred CCccch---HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 986432 1233455555543 2235677777 7 76666655443
No 441
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.92 E-value=4.5e-06 Score=82.07 Aligned_cols=55 Identities=31% Similarity=0.311 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceeEEEEeCCCCCc
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 71 (643)
++|+++|.||||||||+|+|++...... .++ +++....+.. +..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g---~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG---ITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC---CccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998775322 333 2221111221 34689999999764
No 442
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.79 E-value=5.1e-05 Score=82.61 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=40.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccc-ceEEEEE--EcC-CCcEEEEEEecCCch
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE-QYAVNVV--DQP-GGNKKTLILQEIPEE 483 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~-~~~~~~v--~~~-g~~~~~~i~d~~g~~ 483 (643)
...++|+|+|.||||||||+|+|+|.........|+.. ...+..+ ..+ +....+.++||+|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45689999999999999999999998754322223211 1111111 111 234567889999954
No 443
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.72 E-value=5.4e-05 Score=79.37 Aligned_cols=137 Identities=16% Similarity=0.065 Sum_probs=76.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh------cCCCCCCCCCCcc-------------cceEEEEEE---------------cC
Q 006490 423 VFRCLLFGPQNAGKSALLNSFL------ERPFSENYAPTTG-------------EQYAVNVVD---------------QP 468 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~------~~~~~~~~~~t~~-------------~~~~~~~v~---------------~~ 468 (643)
+..|+++|++||||||++..|. +.+.......+.+ ....+.... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4679999999999999999997 2222111100000 011111000 00
Q ss_pred CCcEEEEEEecCCchh--hh-hhhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 006490 469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 542 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK 542 (643)
.....++++||+|... .. .+.. .......+|.+++|+|++.+.. .......+.+. -.+..+|+||
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~------~~~~gVIlTK 247 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA------SPIGSVIITK 247 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH------CSSEEEEEEC
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc------cCCcEEEEec
Confidence 0234677899998533 11 1110 1122335799999999987533 33333444433 3467789999
Q ss_pred CCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 543 DDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 543 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
+|.... ...+-.+....+.+ +.+++.
T Consensus 248 lD~~a~---~G~als~~~~~g~P-i~fig~ 273 (433)
T 3kl4_A 248 MDGTAK---GGGALSAVVATGAT-IKFIGT 273 (433)
T ss_dssp GGGCSC---HHHHHHHHHHHTCE-EEEEEC
T ss_pred cccccc---chHHHHHHHHHCCC-EEEEEC
Confidence 998653 22344555667776 777775
No 444
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=0.00014 Score=76.28 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=76.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCC--CC-C-C-CC----------CCCCeeeCC---------------cc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAA------TESV--PE-K-V-PP----------VHAPTRLPP---------------DF 54 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~------~~~~--~~-~-~-~~----------~~~~~~~~~---------------~~ 54 (643)
+...|+++|++||||||++..|. +.+. .. + + ++ ..+...... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678999999999999999886 2221 00 0 0 00 000000000 01
Q ss_pred cCCceeEEEEeCCCCCc--c-hhhhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Q 006490 55 YPDRVPVTIIDTSSSLE--N-KGKLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~--~-~~~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D 126 (643)
...++.+.|+||||... . ..... ...-.+|.+++|+|+........ ....+.+. -.+..+|.||+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEeccc
Confidence 12467899999999643 1 11111 11234699999999876433222 23334332 346788999999
Q ss_pred CCCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
..... .....+....+ .|+..++. |+++++
T Consensus 250 ~~a~~------G~als~~~~~g--~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 250 GTAKG------GGALSAVVATG--ATIKFIGT--GEKIDE 279 (433)
T ss_dssp GCSCH------HHHHHHHHHHT--CEEEEEEC--CSSSSC
T ss_pred ccccc------hHHHHHHHHHC--CCEEEEEC--CCChHh
Confidence 86421 12233334444 25666664 777753
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.63 E-value=5.9e-05 Score=75.45 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=54.8
Q ss_pred CceeEEEEeCCCCCc--chh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccC
Q 006490 57 DRVPVTIIDTSSSLE--NKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDL 127 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~ 127 (643)
.++.+.|+||||... ... ... ..+..+|.+++|+|+.... +... ..+.+.. ..| ..+|.||+|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~---~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ---ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH---TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh---hCCCCEEEEeCCCC
Confidence 567899999999765 321 221 2345789999999976432 2111 2233332 356 6789999997
Q ss_pred CCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhHH
Q 006490 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV 167 (643)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 167 (643)
... ......+...++ .++..++ .|++++++
T Consensus 252 ~~~------~g~~~~~~~~~~--~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 252 TAK------GGGALSAVAATG--ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CTT------HHHHHHHHHTTT--CCEEEEE--CSSSTTCE
T ss_pred Ccc------hHHHHHHHHHHC--cCEEEEe--CCCChhhc
Confidence 532 122334445554 2455544 57777643
No 446
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.57 E-value=4.9e-05 Score=76.06 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred HHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCcccc---HHHHHHHHHHhCCCCc
Q 006490 492 KEALASCDVTIFVYDSSDEYS-WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGIEPP 567 (643)
Q Consensus 492 ~~~~~~ad~illv~D~s~~~s-~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 567 (643)
...+.++|.+++|+|+.+|.. ...+.+++...... ++|.++|+||+||.++... .+......+..|.+ +
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v 153 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-V 153 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-E
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-E
Confidence 346899999999999997643 33344444333333 8999999999999875321 12223333445775 8
Q ss_pred EEeeeccC-CHHHHHH
Q 006490 568 IPVSMKSK-DLNNVFS 582 (643)
Q Consensus 568 ~~vSa~~g-~i~~l~~ 582 (643)
+.+||+++ |++++++
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 99999988 7765543
No 447
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.52 E-value=0.00016 Score=72.36 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=77.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCccc-----------ceEEEEEEcC-----------------
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLE------RPFSENYAPTTGE-----------QYAVNVVDQP----------------- 468 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~------~~~~~~~~~t~~~-----------~~~~~~v~~~----------------- 468 (643)
+-.++++|++|+||||++..|.+ .+.......+.+. ...+.++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44688899999999999999873 2221111111000 0001111100
Q ss_pred CCcEEEEEEecCCchh--hh-hhhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEe
Q 006490 469 GGNKKTLILQEIPEEG--VK-KILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIAS 541 (643)
Q Consensus 469 g~~~~~~i~d~~g~~~--~~-~~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~N 541 (643)
.....++++||+|... .. .+.. .......+|.+++|+|++.+. ........+.. ..| ..+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------~~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-------ASKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-------TCTTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-------hCCCCEEEEe
Confidence 0233578899998654 21 1210 112455799999999997542 22233333332 345 678899
Q ss_pred CCCCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHHH
Q 006490 542 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLNN 579 (643)
Q Consensus 542 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~~ 579 (643)
|+|.... ......+....+.+ +.+++ +| ++++
T Consensus 248 k~D~~~~---~g~~~~~~~~~~~p-i~~i~--~Ge~v~d 280 (297)
T 1j8m_F 248 KMDGTAK---GGGALSAVAATGAT-IKFIG--TGEKIDE 280 (297)
T ss_dssp CGGGCTT---HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred CCCCCcc---hHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence 9997642 23345567777776 66666 45 5543
No 448
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.47 E-value=0.00029 Score=77.89 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q 006490 425 RCLLFGPQNAGKSALLNSFLERPFS 449 (643)
Q Consensus 425 ki~ivG~~nvGKSSLln~l~~~~~~ 449 (643)
.++|+|++|||||||++.+.|-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999997433
No 449
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.35 E-value=0.00021 Score=78.99 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 006490 14 RVVVVGDRGTGKSSLIAAAATES 36 (643)
Q Consensus 14 kI~lvG~~~vGKSsL~n~l~~~~ 36 (643)
.|+|+|+.|+|||||++.+++-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999864
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.22 E-value=0.00082 Score=68.54 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=54.9
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHH---HHhCCCCcEE
Q 006490 494 ALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---QELGIEPPIP 569 (643)
Q Consensus 494 ~~~~ad~illv~D~s~~~-s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~ 569 (643)
.+.++|.+++|.. .+|. +...+.+++...... ++|.++|+||+||.++.. .+..+.+. +..|++ ++.
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETL------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VLM 197 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHH------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EEE
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhc------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EEE
Confidence 4689999998855 4553 334444554443333 789999999999987532 11233333 345776 899
Q ss_pred eeeccC-CHHHHHHHH
Q 006490 570 VSMKSK-DLNNVFSRI 584 (643)
Q Consensus 570 vSa~~g-~i~~l~~~l 584 (643)
+||+++ |++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 999999 999887643
No 451
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=96.98 E-value=0.0024 Score=57.35 Aligned_cols=136 Identities=17% Similarity=0.288 Sum_probs=93.5
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCC-CCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (643)
..+.....+..+|...|.+.++.++..|+...... .+. ..+..++..+... . +..++++.|+.+.....
T Consensus 19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~---~------dg~i~~~eF~~~~~~~~ 88 (166)
T 2mys_B 19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAA-MGRLNVKNEELDAMIKE---A------SGPINFTVFLTMFGEKL 88 (166)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH---C------CCCcCHHHHHHHHHHHh
Confidence 34556677889999999999999999999766554 344 6666666655442 1 45699999998866332
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (643)
Q Consensus 269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~ 348 (643)
.. ......++.+|+.||.|++|.++.+|+..++.... .
T Consensus 89 ~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~ 126 (166)
T 2mys_B 89 KG-----------------------------------------ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG-G 126 (166)
T ss_pred cc-----------------------------------------CCcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcC-C
Confidence 10 01135678899999999999999999999987652 2
Q ss_pred CCC---CCCCCCCccccCCcccchhhhhhhhh
Q 006490 349 PWD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 349 p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
+.. ..........+.+|.|+...|+..+.
T Consensus 127 ~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~ 158 (166)
T 2mys_B 127 RFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158 (166)
T ss_pred CCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence 211 11122234457788888888877654
No 452
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=96.85 E-value=0.0037 Score=55.61 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=97.1
Q ss_pred cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (643)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (643)
...+.....+.++|...|.+.++.++.+|+...... .+..+...++..+...+.. + .+..++++.|+.+.....
T Consensus 16 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~eF~~~~~~~~ 89 (161)
T 3fwb_A 16 ELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDS---E--GRHLMKYDDFYIVMGEKI 89 (161)
T ss_dssp TSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCc---C--CCCeEeHHHHHHHHHHHH
Confidence 355667788999999999999999999999776554 5667777777666655532 1 133599999988876433
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (643)
Q Consensus 269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~ 348 (643)
... .....+..+|+.||.|++|.++.+|+..++......
T Consensus 90 ~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 128 (161)
T 3fwb_A 90 LKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGET 128 (161)
T ss_dssp HTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred hcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCC
Confidence 211 124567889999999999999999999998865211
Q ss_pred -C-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490 349 -P-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 349 -p-~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
+ ............+..|.|+...|+..+
T Consensus 129 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 158 (161)
T 3fwb_A 129 LTDEELRAMIEEFDLDGDGEINENEFIAIC 158 (161)
T ss_dssp CCHHHHHHHHHTTCSSSSSSEEHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 1 111111223345677888888776654
No 453
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.83 E-value=0.0033 Score=63.59 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=76.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCCcc-----------cceEEEEEEcC-C--------------
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLERPFSE------NYAPTTG-----------EQYAVNVVDQP-G-------------- 469 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~~~~~~------~~~~t~~-----------~~~~~~~v~~~-g-------------- 469 (643)
.+--++++|++||||||+++.|.+..... ....+.+ ....+..+.-. +
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 35579999999999999999998632111 0001110 00000011000 0
Q ss_pred --CcEEEEEEecCCchhhhh-hhc---cHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 006490 470 --GNKKTLILQEIPEEGVKK-ILS---NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 543 (643)
Q Consensus 470 --~~~~~~i~d~~g~~~~~~-~~~---~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~ 543 (643)
......++|++|...... +.+ .....-.+|-.+++.|+... ++.......+.+.. + ..++++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-----~-it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-----K-IDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-----C-CCEEEEECG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-----C-CCEEEEeCc
Confidence 012345689988532211 111 11122358999999998765 33444444444321 2 336778999
Q ss_pred CCCCccccHHHHHHHHHHhCCCCcEEeeeccC-CHH
Q 006490 544 DLKPYTMAVQDSARVTQELGIEPPIPVSMKSK-DLN 578 (643)
Q Consensus 544 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~g-~i~ 578 (643)
|.... .-..-.+....+.+ +.+++ +| +++
T Consensus 279 D~~a~---~G~~l~~~~~~~~p-i~~i~--~Ge~v~ 308 (328)
T 3e70_C 279 DADAR---GGAALSISYVIDAP-ILFVG--VGQGYD 308 (328)
T ss_dssp GGCSC---CHHHHHHHHHHTCC-EEEEE--CSSSTT
T ss_pred CCccc---hhHHHHHHHHHCCC-EEEEe--CCCCcc
Confidence 96442 22344667777876 77777 55 543
No 454
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=96.83 E-value=0.0013 Score=57.41 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (643)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (643)
+.....++++|...|.+.++.++..|+...... .+...+..++..+... .+..++++.|+.+.......
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~- 71 (143)
T 3j04_B 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS-MGKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG- 71 (143)
T ss_dssp HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH-TSCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence 345567888999999999999999999776544 4556666655554432 35569999999886521100
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-
Q 006490 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP- 349 (643)
Q Consensus 272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p- 349 (643)
......++.+|+.||.|++|.++.+|+..++..... .+
T Consensus 72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~ 111 (143)
T 3j04_B 72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTD 111 (143)
T ss_dssp ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCH
T ss_pred ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCH
Confidence 011356888999999999999999999999886521 11
Q ss_pred CCCCCCCCCccccCCcccchhhhhhhh
Q 006490 350 WDEAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
.....+......+.+|.|+...|+...
T Consensus 112 ~~~~~~~~~~D~d~dg~i~~~eF~~~~ 138 (143)
T 3j04_B 112 EEVDEMYREAPIDKKGNFNYVEFTRIL 138 (143)
T ss_dssp HHHHHHHHHTTCCSSSCCCSTHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 011111122345677788887776654
No 455
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.78 E-value=0.0018 Score=65.47 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------C--CC-CCCCC------------CCCeeeCCccc-------------
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATES------V--PE-KVPPV------------HAPTRLPPDFY------------- 55 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~------~--~~-~~~~~------------~~~~~~~~~~~------------- 55 (643)
.+.--|+|+|++||||||+++.|.+.- + .. +.... .+.........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345679999999999999999987531 0 00 00000 00000000000
Q ss_pred --CCceeEEEEeCCCCCcchhhh-H-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccC
Q 006490 56 --PDRVPVTIIDTSSSLENKGKL-N-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL 127 (643)
Q Consensus 56 --~~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D~ 127 (643)
..+..+.++||+|........ . ...-.+|-.+++.|..... ++.. .+..+.+. -..-++++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence 124567889999975422211 1 1122478999999965543 2221 23333322 1234678899997
Q ss_pred CCCCccchhhhhhhHHHHhhcccceEEEeCcccCCChhH
Q 006490 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD 166 (643)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 166 (643)
.... -.+..+....+ .++..++ +|+++++
T Consensus 281 ~a~~------G~~l~~~~~~~--~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DARG------GAALSISYVID--APILFVG--VGQGYDD 309 (328)
T ss_dssp CSCC------HHHHHHHHHHT--CCEEEEE--CSSSTTC
T ss_pred ccch------hHHHHHHHHHC--CCEEEEe--CCCCccc
Confidence 4321 12234444554 2555665 6777755
No 456
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.73 E-value=0.0011 Score=69.69 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-------cCCC---CCC--CCCCC----------CCeeeCC---------------cc
Q 006490 12 GVRVVVVGDRGTGKSSLIAAAA-------TESV---PEK--VPPVH----------APTRLPP---------------DF 54 (643)
Q Consensus 12 ~~kI~lvG~~~vGKSsL~n~l~-------~~~~---~~~--~~~~~----------~~~~~~~---------------~~ 54 (643)
...|+++|.+||||||++..|. +.+. ..+ .+... +...... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999887 3331 011 01000 0000000 00
Q ss_pred cCCceeEEEEeCCCCCcchh-hhH-----HhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccC
Q 006490 55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDL 127 (643)
Q Consensus 55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D~ 127 (643)
...++.+.|+||||...... ... ..+..+|.+++|+|+........ ....+.. ..+ .-+|.||+|.
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDG 252 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTS
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCC
Confidence 12467899999999754322 121 12447899999999875432211 2222222 244 3468999997
Q ss_pred CC
Q 006490 128 RG 129 (643)
Q Consensus 128 ~~ 129 (643)
..
T Consensus 253 ~~ 254 (433)
T 2xxa_A 253 DA 254 (433)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 457
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0017 Score=73.97 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
..-.++|+|+||||||++++.+...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999988754
No 458
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.71 E-value=0.0014 Score=68.75 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
.+-.-|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34556899999999999999999863
No 459
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=96.70 E-value=0.0023 Score=57.99 Aligned_cols=147 Identities=21% Similarity=0.264 Sum_probs=93.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCChHHHHHH---hhhhcCCCCCHHHHHHHH--------HHHHhhccCCcCCCCcChhhHH
Q 006490 193 RCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFL 261 (643)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~l~~~el~~~---~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~ 261 (643)
...+.++++|...|.+.++.++.+|+... .....+...+..++..+. ..+...-.++ +..|+++.|+
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~--dg~i~~~Ef~ 81 (176)
T 1nya_A 4 IASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGS--DGSLTEEQFI 81 (176)
T ss_dssp HHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCT--TCCBCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC--CCeEcHHHHH
Confidence 34567888999999999999999999875 344577788888887665 3444332222 3359999999
Q ss_pred HHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhh
Q 006490 262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341 (643)
Q Consensus 262 ~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~ 341 (643)
.+........... .+.......++.+|+.+|.|++|.++.+|+..+
T Consensus 82 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~ 127 (176)
T 1nya_A 82 RVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAAW 127 (176)
T ss_dssp HHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHH
T ss_pred HHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 8876443111000 011122456788999999999999999999888
Q ss_pred hccCCCCCC-CCCCCCCCccccCCcccchhhhhhhh
Q 006490 342 FLTAPESPW-DEAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 342 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
+.... .+- ...........+.+|.|+...|...+
T Consensus 128 l~~~g-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 162 (176)
T 1nya_A 128 LTALG-MSKAEAAEAFNQVDTNGNGELSLDELLTAV 162 (176)
T ss_dssp HHHTT-CCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 87653 210 00111112334666777776665553
No 460
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=96.64 E-value=0.003 Score=57.10 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhc---CCCCCHHH-HHHHH-----HHHHhhccCCcCCCCcChhhHHHH
Q 006490 193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK-----RVVQEKQHDGVNDLGLTLSGFLFL 263 (643)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~---~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~ 263 (643)
.....++++|...|.+.++.++.+|+........ +...+..+ +..+. .++.... .+..|+++.|+.+
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D----~~g~i~~~EF~~~ 78 (174)
T 1q80_A 3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA----GGKGIDETTFINS 78 (174)
T ss_dssp HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT----TTSCEEHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC----CCCeEcHHHHHHH
Confidence 3456688889999999999999999977655433 25555555 44332 2222221 4455999999987
Q ss_pred HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhc
Q 006490 264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 343 (643)
Q Consensus 264 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~ 343 (643)
........ .........++.+|+.+|.|++|.++.+|+..++.
T Consensus 79 ~~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~ 121 (174)
T 1q80_A 79 MKEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121 (174)
T ss_dssp HHHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred HHHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence 66433100 01122346788999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490 344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
...-.+............+.+|.|+...|+..+.
T Consensus 122 ~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 155 (174)
T 1q80_A 122 MLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155 (174)
T ss_dssp HHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence 6521111111122234457788888888776643
No 461
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=96.63 E-value=0.004 Score=54.74 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=96.0
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (643)
..+.....+.++|...|.+.++.++..|+...... .+......++..+...+... .+..++++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 78 (153)
T 3ox6_A 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL 78 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence 34556677889999999999999999999766543 46677777777766665432 1345999999988653331
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (643)
Q Consensus 270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p 349 (643)
... ........+..+|+.+|.|++|.++.+|+..++...-+.+
T Consensus 79 ~~~-------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 121 (153)
T 3ox6_A 79 AET-------------------------------------ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ 121 (153)
T ss_dssp TCC-------------------------------------HHHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred ccc-------------------------------------cccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 110 0112245688899999999999999999999887632222
Q ss_pred CCC---CCCCCCccccCCcccchhhhhhhh
Q 006490 350 WDE---APYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
... .........+.+|.|+...|+..+
T Consensus 122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp CCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 211 111122345677788887776543
No 462
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=96.61 E-value=0.0034 Score=56.48 Aligned_cols=142 Identities=16% Similarity=0.197 Sum_probs=96.8
Q ss_pred cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (643)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (643)
...+.....+.++|...|.+.++.++..|+..... ..+...+..++..+...+. .+ .+..++++.|+.+.....
T Consensus 21 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~-~~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~eF~~~~~~~~ 94 (169)
T 3qrx_A 21 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR-ALGFEPKKEEIKKMISEID---KD--GSGTIDFEEFLTMMTAKM 94 (169)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHH-HTSCCCCHHHHHHHHHHHC---SS--SSSSEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH-HcCCCCCHHHHHHHHHHhc---CC--CCCcCCHHHHHHHHHHHh
Confidence 34566678899999999999999999999976653 4466777777766655542 11 234599999998866332
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-
Q 006490 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE- 347 (643)
Q Consensus 269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~- 347 (643)
. .......+..+|+.+|.|++|.++.+|+..++.....
T Consensus 95 ~-----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 133 (169)
T 3qrx_A 95 G-----------------------------------------ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGEN 133 (169)
T ss_dssp H-----------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred c-----------------------------------------ccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 1 1123456788999999999999999999998886521
Q ss_pred CC-CCCCCCCCCccccCCcccchhhhhhhhh
Q 006490 348 SP-WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 348 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.+ ............+.+|.|+...|+..+.
T Consensus 134 ~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 134 LTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp CCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 11 1111112234456778888888776654
No 463
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=96.60 E-value=0.0049 Score=56.75 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhhhhc-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHHHHhhc-----cCCcC-CCCcChhhH
Q 006490 191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ-----HDGVN-DLGLTLSGF 260 (643)
Q Consensus 191 ~~~~~~~l~~~~~~~-~~~~~~~l~~~el~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~f 260 (643)
.+...+.++++|... |.+.++.++.+|+........ +......++..+.+.+.... ....+ +..|+++.|
T Consensus 7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 86 (191)
T 2ccm_A 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86 (191)
T ss_dssp CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence 345566788999999 999999999999977665543 66666677766663332221 11122 334999999
Q ss_pred HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhh
Q 006490 261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340 (643)
Q Consensus 261 ~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~ 340 (643)
+.+.......... | ..+.......+..+|+.+|.|++|.++.+|+..
T Consensus 87 ~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~ 133 (191)
T 2ccm_A 87 LKMWAECVKSVEK-----------------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133 (191)
T ss_dssp HHHHHHHHHHHHT-----------------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred HHHHHHHhccccc-----------------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 8876643210000 0 011233456788999999999999999999998
Q ss_pred hhccCCCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490 341 LFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 341 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
++.... .+ ............+.+|.|+...|....
T Consensus 134 ~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 169 (191)
T 2ccm_A 134 VYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLW 169 (191)
T ss_dssp HHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHH
T ss_pred HHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 886552 21 001111122344677888887776654
No 464
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=96.59 E-value=0.0096 Score=51.95 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (643)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (643)
+.....++++|...|.+.++.++..|+...... .+...+..++..+...+..... +...++++.|+.+........
T Consensus 4 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~~~d~---~~g~i~~~eF~~~~~~~~~~~ 79 (149)
T 2mys_C 4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPSKEEM---NAAAITFEEFLPMLQAAANNK 79 (149)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhhhccc---cCCcCcHHHHHHHHHHHhccC
Confidence 445667888899999999999999999765433 4666677776666655511122 224599999988766331000
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC
Q 006490 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (643)
Q Consensus 272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 351 (643)
.......++.+|+.||.|++|.++.+|+..++..... +..
T Consensus 80 ---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~ 119 (149)
T 2mys_C 80 ---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-KMT 119 (149)
T ss_pred ---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCC-CCC
Confidence 0112456788999999999999999999999886522 211
Q ss_pred ---CCCCCCCccccCCcccchhhhhhhh
Q 006490 352 ---EAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 352 ---~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
....... ..+.+|.|+...|+..+
T Consensus 120 ~~~~~~~~~~-d~~~dg~i~~~eF~~~~ 146 (149)
T 2mys_C 120 EEEVEELMKG-QEDSNGCINYEAFVKHI 146 (149)
T ss_pred HHHHHHHHhh-CCCCCCcEeHHHHHHHH
Confidence 1111222 45667778887776653
No 465
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=96.56 E-value=0.0047 Score=54.96 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHhhhhhcCCCC-CCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHH
Q 006490 187 EQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 265 (643)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 265 (643)
.....+.....+.+.|...|.+. ++.++.+|+...... .+...+..++..+...+.. + .+..++++.|+.+..
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~---~--~~g~i~~~eF~~~~~ 82 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDE---D--GSGTVDFDEFLVMMV 82 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSSBCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCC---C--CCCeEcHHHHHHHHH
Confidence 33455666778999999999999 999999999766544 4566777776665554432 2 234599999998876
Q ss_pred HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490 266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (643)
Q Consensus 266 ~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~ 345 (643)
...... ........+..+|+.+|.|++|.++.+|+..++...
T Consensus 83 ~~~~~~--------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~ 124 (161)
T 1dtl_A 83 RSMKDD--------------------------------------SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124 (161)
T ss_dssp HHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC
T ss_pred HHhccc--------------------------------------ccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 543100 011234567889999999999999999999998765
Q ss_pred CCCCCC---CCCCCCCccccCCcccchhhhhhhh
Q 006490 346 PESPWD---EAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 346 ~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
. .+.. ..........+.+|.|+...|+..+
T Consensus 125 g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 157 (161)
T 1dtl_A 125 G-ETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157 (161)
T ss_dssp ---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 2 1111 1111122334677788887776654
No 466
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=96.55 E-value=0.012 Score=52.60 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=90.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcC
Q 006490 192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG 271 (643)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 271 (643)
+.....+.++|...|.+.++.++..|+...... .+..+...++..+...+. .+ .+..++++.|+.+.....
T Consensus 23 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~ef~~~~~~~~--- 93 (166)
T 2aao_A 23 EEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAAD---VD--NSGTIDYKEFIAATLHLN--- 93 (166)
T ss_dssp HHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHC---TT--CCSSBCHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhC---CC--CCCeEcHHHHHHHHHHHh---
Confidence 445667888999999999999999999776554 466677766665554442 22 133489999987743110
Q ss_pred CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC
Q 006490 272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD 351 (643)
Q Consensus 272 ~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 351 (643)
.......+..+|+.+|.|++|.++.+|+..++....-.+..
T Consensus 94 ---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~ 134 (166)
T 2aao_A 94 ---------------------------------------KIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVR 134 (166)
T ss_dssp ---------------------------------------HHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-------
T ss_pred ---------------------------------------hcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHH
Confidence 00112457889999999999999999999998865322222
Q ss_pred CCCCCCCccccCCcccchhhhhhhhh
Q 006490 352 EAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
..........+.+|.|+...|...+.
T Consensus 135 ~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 135 IEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp -CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 22222334557778888888877654
No 467
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.54 E-value=0.00035 Score=74.90 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=63.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceeEEEEeCCCCCc--chhhh--------HH
Q 006490 10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLE--NKGKL--------NE 78 (643)
Q Consensus 10 ~~~~kI~lvG~~~vGKSsL~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~--------~~ 78 (643)
...++|+++|.||+||||+.++|...-.....+...-. ...............+||+.|.+. ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999764211111110000 000011112223446788888521 12221 34
Q ss_pred hhccCCEEEEEEECCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 006490 79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125 (643)
Q Consensus 79 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~ 125 (643)
++..+++.++|+|.++. +.+... .|...+++. ..+++.+-..+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~ 159 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESIC 159 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEEC
Confidence 56667889999999887 344433 577777766 45565554433
No 468
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.52 E-value=0.0079 Score=63.60 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 006490 9 SRTGVRVVVVGDRGTGKSSLIAAAAT 34 (643)
Q Consensus 9 ~~~~~kI~lvG~~~vGKSsL~n~l~~ 34 (643)
....-.|+|+|.+|||||||++.|.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHH
Confidence 34556799999999999999999875
No 469
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.51 E-value=0.0036 Score=65.77 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcC
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLER 446 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~ 446 (643)
....-|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567999999999999999999964
No 470
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=96.50 E-value=0.0031 Score=56.41 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=92.5
Q ss_pred HHHHhhhhhcCCCCCCCCChHHHHHHh---hhhcCCCCCHHHHHHHH--------HHHHhhccCCcCCCCcChhhHHHHH
Q 006490 196 RALKRIFIICDHDMDGALNDAELNEFQ---VKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFLH 264 (643)
Q Consensus 196 ~~l~~~~~~~~~~~~~~l~~~el~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~~~~ 264 (643)
+.++++|...|.+.++.++..|+.... ....+...+..++..+. ..+...-.++ +..|+++.|+.+.
T Consensus 4 ~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~--~g~i~~~ef~~~~ 81 (166)
T 3akb_A 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG--DQRITREEFVTGA 81 (166)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTS--SSCEEHHHHHHTH
T ss_pred HHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC--CCcCcHHHHHHHH
Confidence 457888999999999999999997764 34567778888887765 3344443322 3349999998876
Q ss_pred HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhcc
Q 006490 265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 344 (643)
Q Consensus 265 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~ 344 (643)
......... .+...-...+..+|+.+|.|++|.++.+|+..++..
T Consensus 82 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~ 126 (166)
T 3akb_A 82 VKRLRDKPD-----------------------------------RFAEMARPFLHAALGVADTDGDGAVTVADTARALTA 126 (166)
T ss_dssp HHHHHHSHH-----------------------------------HHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHHH
T ss_pred HHHhccCcc-----------------------------------chHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 644311100 011122445888999999999999999999888876
Q ss_pred CCCCC-CCCCCCCCCccccCCcccchhhhhhhh
Q 006490 345 APESP-WDEAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 345 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
.. .+ ............+.+|.|+...|....
T Consensus 127 ~~-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 158 (166)
T 3akb_A 127 FG-VPEDLARQAAAALDTDGDGKVGETEIVPAF 158 (166)
T ss_dssp TT-CCHHHHHHHHHHHCTTCSSBCCHHHHHHHH
T ss_pred hC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 53 11 011111122344677788877776554
No 471
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=96.43 E-value=0.015 Score=52.92 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhhhc-CCCCCCCCChHHHHHHhhhhc---CCCCCHHHHHHHHHH--------HHhhccCCcCCCCcChhh
Q 006490 192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG 259 (643)
Q Consensus 192 ~~~~~~l~~~~~~~-~~~~~~~l~~~el~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 259 (643)
+...+.++++|... |.+.++.++.+|+........ +......+++.+... +...-.++ +..|+.+.
T Consensus 4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~--dG~I~~~E 81 (185)
T 2sas_A 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINK--DDVVSWEE 81 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTC--SSCEEHHH
T ss_pred HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeEcHHH
Confidence 44566788999999 999999999999976554432 246667777766533 33332222 33499999
Q ss_pred HHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHh
Q 006490 260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE 339 (643)
Q Consensus 260 f~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~ 339 (643)
|+.+.......... + ..........+..+|+.+|.|++|.|+.+|+.
T Consensus 82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~ 128 (185)
T 2sas_A 82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ 128 (185)
T ss_dssp HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence 99887654422100 0 00012234678999999999999999999999
Q ss_pred hhhccCCCCC-CCCCCCCCCccccCCcccchhhhhhhhh
Q 006490 340 DLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 340 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.++.... .| ............+.+|.|+...|.....
T Consensus 129 ~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~ 166 (185)
T 2sas_A 129 NYCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRYKELYY 166 (185)
T ss_dssp HHTTSSC-CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 9987643 22 1111222234457788888877766543
No 472
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.41 E-value=0.011 Score=62.10 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh-------cCCCCCC----CCCCc-------ccceEEEEEEc-----------------
Q 006490 423 VFRCLLFGPQNAGKSALLNSFL-------ERPFSEN----YAPTT-------GEQYAVNVVDQ----------------- 467 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~-------~~~~~~~----~~~t~-------~~~~~~~~v~~----------------- 467 (643)
+..|+++|.+||||||++..|. |...... +.+.. .....+.++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999997 3332211 11110 00000111110
Q ss_pred CCCcEEEEEEecCCchhhh-hhh---ccHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCc-EEEEEeC
Q 006490 468 PGGNKKTLILQEIPEEGVK-KIL---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASK 542 (643)
Q Consensus 468 ~g~~~~~~i~d~~g~~~~~-~~~---~~~~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~p-vilv~NK 542 (643)
......++++||+|..... .+. .....+..+|.+++|+|+..+.. .......+.. ..+ .-+|+||
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-------~l~i~gvVlnK 249 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-------ALPLTGVVLTK 249 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-------HSCCCCEEEEC
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-------cCCCeEEEEec
Confidence 0023467889999853321 111 11233457899999999986532 2222233322 234 2468899
Q ss_pred CCCCCccccHHHHHHHHHHhCCC
Q 006490 543 DDLKPYTMAVQDSARVTQELGIE 565 (643)
Q Consensus 543 ~Dl~~~~~~~~~~~~~~~~~~~~ 565 (643)
+|..... ..+..+....+.+
T Consensus 250 ~D~~~~~---g~~l~i~~~~~~P 269 (433)
T 2xxa_A 250 VDGDARG---GAALSIRHITGKP 269 (433)
T ss_dssp TTSSSCC---THHHHHHHHHCCC
T ss_pred CCCCccH---HHHHHHHHHHCCC
Confidence 9975432 2333556666654
No 473
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=96.38 E-value=0.0028 Score=59.02 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=91.9
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (643)
..+.....+.++|...|.+.+|.++..|+...... ++..++..++..+...+ +..|+++.|+.+.....
T Consensus 51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~- 119 (196)
T 3dtp_E 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDS-LGRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRI- 119 (196)
T ss_dssp SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHT-TSCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHh-
Confidence 33445667889999999999999999999766543 45667776665554432 45699999998864211
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (643)
Q Consensus 270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p 349 (643)
. .......+..+|+.||.|++|.|+..|+..++ .. +.+
T Consensus 120 --~--------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~-g~~ 157 (196)
T 3dtp_E 120 --A--------------------------------------GTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW-GEK 157 (196)
T ss_dssp --C--------------------------------------SSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS-SSC
T ss_pred --c--------------------------------------CCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc-CCC
Confidence 0 00113567889999999999999999999999 44 222
Q ss_pred CC---CCCCCCCccccCCcccchhhhhhhhh
Q 006490 350 WD---EAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.. ...+......+.+|.|+...|+....
T Consensus 158 ~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 158 FSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp CCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred CCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 21 11222334456778888887776543
No 474
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.38 E-value=0.0033 Score=54.64 Aligned_cols=134 Identities=19% Similarity=0.319 Sum_probs=89.7
Q ss_pred HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 273 (643)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 273 (643)
....++++|...|.+.++.++..|+...... .+...+..++..+...+.. + .+..++++.|+.+.......
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~eF~~~~~~~~~~--- 74 (142)
T 2bl0_C 4 QVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADA---T--GNGKIQFPEFLSMMGRRMKQ--- 74 (142)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCT---T--CSSEEEHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCc---C--CCCeeeHHHHHHHHHHHhcC---
Confidence 4556888899999999999999999766544 4667777766665544422 2 13349999999886643210
Q ss_pred cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC--
Q 006490 274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-- 351 (643)
Q Consensus 274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~-- 351 (643)
......++.+|+.+|.|++|.++.+|+..++.... .+..
T Consensus 75 --------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~ 115 (142)
T 2bl0_C 75 --------------------------------------TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLG-DRLKPH 115 (142)
T ss_dssp --------------------------------------CCCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSS-SCCCHH
T ss_pred --------------------------------------CChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC-CCCCHH
Confidence 01235688899999999999999999999987652 1111
Q ss_pred -CCCCCCCccccCCcccchhhhhhhh
Q 006490 352 -EAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
......... +.+|.|+...|+..+
T Consensus 116 ~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 116 EFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 111112233 667777777776543
No 475
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=96.37 E-value=0.0052 Score=53.73 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=89.0
Q ss_pred HHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCc
Q 006490 194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 273 (643)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 273 (643)
....++++|...|.+.+|.++..|+...... .+...+..++..+...+. .+ .+..++++.|+.++.....
T Consensus 4 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d---~~--~~g~i~~~eF~~~~~~~~~---- 73 (143)
T 2obh_A 4 QKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEID---KE--GTGKMNFGDFLTVMTQKMS---- 73 (143)
T ss_dssp HHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHT---TT--CCSEEEHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhC---CC--CCCeeeHHHHHHHHHHHhc----
Confidence 4566888999999999999999999765543 456677777666554432 22 1334999999987553220
Q ss_pred cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CCC-CC
Q 006490 274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP-WD 351 (643)
Q Consensus 274 ~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~p-~~ 351 (643)
......-++.+|+.||.|++|.++..|+..++.... ..+ ..
T Consensus 74 -------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 116 (143)
T 2obh_A 74 -------------------------------------EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEE 116 (143)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHH
T ss_pred -------------------------------------cccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHH
Confidence 011234578899999999999999999999887542 111 11
Q ss_pred CCCCCCCccccCCcccchhhhhhh
Q 006490 352 EAPYKDAAETTALGNLTLKGFVSK 375 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~ 375 (643)
..........+.+|.|+...|+..
T Consensus 117 ~~~~~~~~D~d~dG~I~~~eF~~~ 140 (143)
T 2obh_A 117 LQEMIDEADRDGDGEVSEQEFLRI 140 (143)
T ss_dssp HHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHH
Confidence 111112234567788888777654
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.36 E-value=0.0049 Score=57.63 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=49.3
Q ss_pred CceeEEEEeCCCCCcchhhhHHhhccCCEEEEEEECCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCC
Q 006490 57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLR 128 (643)
Q Consensus 57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~D~~ 128 (643)
..+.+.|+|||+.. .......+..+|.+|+++..+... ..+. .+.+.++.. .++.++.+|.|++|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 45789999999855 345567788899999999875544 5554 466777654 3467889999999954
No 477
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.36 E-value=0.015 Score=58.07 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=37.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCCCCccccHHHHHHHHHHhCCCCcEEee
Q 006490 496 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 496 ~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
..++.++++.|++.... +...+..+.+.. +. .++++||.|..... ..+-.+...++.+ +.+++
T Consensus 219 ~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-----~~-t~iivTh~d~~a~g---g~~l~i~~~~~~p-i~~ig 281 (304)
T 1rj9_A 219 EEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-----GL-TGVIVTKLDGTAKG---GVLIPIVRTLKVP-IKFVG 281 (304)
T ss_dssp TCCSEEEEEEETTBCTH---HHHHHHHHHHHH-----CC-SEEEEECTTSSCCC---TTHHHHHHHHCCC-EEEEE
T ss_pred CCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-----CC-cEEEEECCcccccc---cHHHHHHHHHCCC-eEEEe
Confidence 45788899999876532 333344443321 33 45678999865432 2344566777776 66665
No 478
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.33 E-value=0.00056 Score=73.29 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=61.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCCCcEEEEEEecCCchhhhhh--------hccH
Q 006490 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI--------LSNK 492 (643)
Q Consensus 421 ~~~~ki~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g~~~~~~i~d~~g~~~~~~~--------~~~~ 492 (643)
..+++|+++|.||+||||+.++|........ .++.............|......+||..|++.+... ....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999976422110 011100000000001111112235777776332111 1124
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 006490 493 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 540 (643)
Q Consensus 493 ~~~~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~ 540 (643)
.++..+++.++|+|+++. +++....|...+.+. +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~------~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN------GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH------TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc------CCcEEEEE
Confidence 556667888999999987 446666676666554 45555544
No 479
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=96.31 E-value=0.0018 Score=66.52 Aligned_cols=143 Identities=21% Similarity=0.316 Sum_probs=95.5
Q ss_pred cccccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHH
Q 006490 185 HDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264 (643)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 264 (643)
.......++-...++++|...|.+.++.++..|+..... .++..++..+++.+.+.+.. + .+..|+++.|+.+.
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLr-sLG~~~TeeEI~~Lf~~~D~---D--gDG~IdFeEFl~lm 364 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR-SLGQNPTEAELQDMINEVDA---D--GDGTIDFPEFLIMM 364 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHHHCS---S--CSSSEEHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHH-HcCCCCCHHHHHHHHHHhCC---C--CCCcCcHHHHHHHH
Confidence 444556778888999999999999999999999977654 35777888887776655532 1 13358999998775
Q ss_pred HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhcc
Q 006490 265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 344 (643)
Q Consensus 265 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~ 344 (643)
.... .. ....+-++.+|+.||.|++|.|+.+|+..++..
T Consensus 365 s~~l---k~--------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~ 403 (440)
T 3u0k_A 365 ARKM---KD--------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTN 403 (440)
T ss_dssp HTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHh---cC--------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHH
Confidence 4110 00 001235778999999999999999999988875
Q ss_pred CC-CCC-CCCCCCCCCccccCCcccchhhhhh
Q 006490 345 AP-ESP-WDEAPYKDAAETTALGNLTLKGFVS 374 (643)
Q Consensus 345 ~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (643)
.- ..+ .....+......+.+|.|+...|+.
T Consensus 404 lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvk 435 (440)
T 3u0k_A 404 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 435 (440)
T ss_dssp HTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 31 111 0011111223456777787777764
No 480
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=96.29 E-value=0.0052 Score=53.58 Aligned_cols=137 Identities=20% Similarity=0.349 Sum_probs=93.6
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (643)
..+.....+.++|...|.+.++.++..|+...... .+......++..+...+.. + .+..++++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~---~--~~g~i~~~ef~~~~~~~~~ 78 (147)
T 4ds7_A 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDV---D--GNHAIEFSEFLALMSRQLK 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT---T--SSSEEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc---C--CCCcCcHHHHHHHHHHhcc
Confidence 44566778899999999999999999999766544 5667777777766655522 1 2334999999988653321
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (643)
Q Consensus 270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p 349 (643)
.......+..+|+.+|.|++|.++.+|+..++..... +
T Consensus 79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~-~ 116 (147)
T 4ds7_A 79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE-K 116 (147)
T ss_dssp -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC-C
T ss_pred -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCC-C
Confidence 1123456788999999999999999999999986532 2
Q ss_pred CCC---CCCCCCccccCCcccchhhhhhh
Q 006490 350 WDE---APYKDAAETTALGNLTLKGFVSK 375 (643)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~ 375 (643)
... ........ +..|.|+...|+..
T Consensus 117 ~~~~~~~~~~~~~d-~~dg~i~~~eF~~~ 144 (147)
T 4ds7_A 117 LTDAEVDEMLREVS-DGSGEINIKQFAAL 144 (147)
T ss_dssp CCHHHHHHHHHHHS-SSCSSEEHHHHHHH
T ss_pred CCHHHHHHHHHHhc-CCCCcCcHHHHHHH
Confidence 111 11112233 66777777777654
No 481
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=96.27 E-value=0.0057 Score=54.19 Aligned_cols=134 Identities=16% Similarity=0.267 Sum_probs=90.6
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (643)
..+.....++++|...|.+.++.++..|+...... .+...+..++..+.. . .+..++++.|+.+......
T Consensus 12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~ 81 (156)
T 1wdc_B 12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ-LGRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKLS 81 (156)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHH-HSSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHhc
Confidence 44556777899999999999999999999766554 356666666655542 1 2456999999988653210
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (643)
Q Consensus 270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p 349 (643)
. ......++.+|+.||.|++|.++.+|+..++... +.+
T Consensus 82 ~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~ 119 (156)
T 1wdc_B 82 G-----------------------------------------TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GDN 119 (156)
T ss_dssp S-----------------------------------------CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SSC
T ss_pred C-----------------------------------------CChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CCC
Confidence 0 0013467889999999999999999999998765 222
Q ss_pred CCC---CCCCCCccccCCcccchhhhhhhh
Q 006490 350 WDE---APYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
... ..+......+ +|.|+...|+...
T Consensus 120 ~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~ 148 (156)
T 1wdc_B 120 FNKDEMRMTFKEAPVE-GGKFDYVKFTAMI 148 (156)
T ss_dssp CCHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCC-CCEEeHHHHHHHH
Confidence 111 1111223345 7778777776653
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.20 E-value=0.036 Score=63.04 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
..-.++|+|+||||||++++.+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3456999999999999999988753
No 483
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=96.18 E-value=0.0075 Score=57.47 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=93.6
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc---CCcC-CCCcChhhHHHHHHH
Q 006490 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH---DGVN-DLGLTLSGFLFLHAL 266 (643)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~f~~~~~~ 266 (643)
.+.....++++|...|.+.++.++..|+.....+..+......++..+...+-..+. ...+ +..|+++.|+.+...
T Consensus 46 s~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~~ 125 (226)
T 2lvv_A 46 DAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLM 125 (226)
T ss_dssp CHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHHH
Confidence 345566788899999999999999999987665656666666666555554411110 0012 234899999885321
Q ss_pred HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC-
Q 006490 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA- 345 (643)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~- 345 (643)
.. .......++.+|+.||.|++|.|+.+|+..++...
T Consensus 126 ~~------------------------------------------~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~ 163 (226)
T 2lvv_A 126 LC------------------------------------------YIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLK 163 (226)
T ss_dssp HH------------------------------------------HHHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHH
T ss_pred HH------------------------------------------hccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHh
Confidence 11 00112467889999999999999999999998653
Q ss_pred -CCCCCC-CCCCCCCccccCCcccchhhhhhhhh
Q 006490 346 -PESPWD-EAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 346 -~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.+.+-. ..........+.+|.|+...|+....
T Consensus 164 ~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~ 197 (226)
T 2lvv_A 164 EWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAV 197 (226)
T ss_dssp HHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 122211 12222234557788898888876643
No 484
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.18 E-value=0.026 Score=56.32 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAAT 34 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~ 34 (643)
+.-.|+|+|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999874
No 485
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.09 E-value=0.0029 Score=58.73 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 006490 11 TGVRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 11 ~~~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
+.--|+|+|++|||||||+++|++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446999999999999999999865
No 486
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.04 E-value=0.025 Score=59.75 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q 006490 422 NVFRCLLFGPQNAGKSALLNSFLE 445 (643)
Q Consensus 422 ~~~ki~ivG~~nvGKSSLln~l~~ 445 (643)
.+--++|+|.+|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345799999999999999999975
No 487
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=95.97 E-value=0.0074 Score=52.49 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=88.7
Q ss_pred HHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccchh
Q 006490 198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW 277 (643)
Q Consensus 198 l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w 277 (643)
++++|...|.+.++.++..|+...... .+......++..+... -.+..++++.|+.+......
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~-------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRS-LGKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK-------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHH-TTCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHH-hCCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence 788899999999999999999766554 3566677766665554 11334999999887541000
Q ss_pred HHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCCC---CCC
Q 006490 278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---EAP 354 (643)
Q Consensus 278 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~~---~~~ 354 (643)
-.......++.+|+.+|.|++|.++.+|+..++..... +.. ...
T Consensus 70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~-~~~~~~~~~ 116 (145)
T 2bl0_B 70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGD-ALTSSEVEE 116 (145)
T ss_dssp --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSS-CCCHHHHHH
T ss_pred --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCC-CCCHHHHHH
Confidence 01234567889999999999999999999999876522 211 111
Q ss_pred CCCCccccCCcccchhhhhhhhh
Q 006490 355 YKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.......+.+|.|+...|+..+.
T Consensus 117 ~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 117 LMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHcCCCCCCcEeHHHHHHHHH
Confidence 22234456778888888776643
No 488
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=95.96 E-value=0.011 Score=51.94 Aligned_cols=137 Identities=22% Similarity=0.320 Sum_probs=89.1
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHc
Q 006490 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (643)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 270 (643)
.+.....++..|...|.+.++.++..|+...... .+...+..++..+...+ ..+ .+..++++.|+.+......
T Consensus 5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~---d~~--~~g~i~~~eF~~~~~~~~~- 77 (148)
T 1exr_A 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEV---DAD--GNGTIDFPEFLSLMARKMK- 77 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHH---CTT--CSSSEEHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHH---CCC--CCCcCcHHHHHHHHHhccc-
Confidence 3445667888899999999999999999766543 45556666665544433 222 1335999999887653221
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCCC
Q 006490 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW 350 (643)
Q Consensus 271 ~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 350 (643)
......-+..+|+.||.|++|.++.+|+..++..... +.
T Consensus 78 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~ 116 (148)
T 1exr_A 78 ----------------------------------------EQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE-KL 116 (148)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTC-CC
T ss_pred ----------------------------------------CCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCC-CC
Confidence 0122345778999999999999999999998876521 11
Q ss_pred CC---CCCCCCccccCCcccchhhhhhh
Q 006490 351 DE---APYKDAAETTALGNLTLKGFVSK 375 (643)
Q Consensus 351 ~~---~~~~~~~~~~~~~~~~~~~~~~~ 375 (643)
.. .........+.+|.|+...|+..
T Consensus 117 ~~~~~~~~~~~~d~d~dg~i~~~eF~~~ 144 (148)
T 1exr_A 117 TDDEVDEMIREADIDGDGHINYEEFVRM 144 (148)
T ss_dssp CHHHHHHHHHHHCSSSSSSBCHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 11 11111233466777888777654
No 489
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=95.95 E-value=0.016 Score=50.93 Aligned_cols=106 Identities=23% Similarity=0.366 Sum_probs=77.6
Q ss_pred cchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (643)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (643)
...+.....++++|...|.+.+|.++..|+...... .+...+..++..+.... +..++++.|+.+.....
T Consensus 9 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~---------~g~i~~~eF~~~~~~~~ 78 (153)
T 2ovk_B 9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLKEC---------PGQLNFTAFLTLFGEKV 78 (153)
T ss_dssp TCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTT-TTSCCCHHHHHHHHHHS---------SSCCCSHHHHHTTTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHH-hCCCCCHHHHHHHHHHc---------CCCCCHHHHHHHHHHHh
Confidence 355666778899999999999999999999776543 45567777766665544 45688999887643100
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccC
Q 006490 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 345 (643)
Q Consensus 269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~ 345 (643)
+ .......++.+|+.||.|++|.++.+|+..++...
T Consensus 79 ----------------------------~-------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 114 (153)
T 2ovk_B 79 ----------------------------S-------------GTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM 114 (153)
T ss_dssp ----------------------------T-------------TCCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHS
T ss_pred ----------------------------c-------------cCChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc
Confidence 0 00012357889999999999999999999998865
No 490
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=95.94 E-value=0.0037 Score=55.12 Aligned_cols=137 Identities=20% Similarity=0.271 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHc
Q 006490 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK 270 (643)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 270 (643)
+++....++.+|...|.+.+|.++..|+..... ..+......++..+...+... ....++...|+........
T Consensus 5 t~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~- 77 (148)
T 2lmt_A 5 TEEQIAEFKDAFVQFDKEGTGKIATRELGTLMR-TLGQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR- 77 (148)
T ss_dssp CSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHH-HHTCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHH-hcCCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc-
Confidence 344566788999999999999999999976544 345566666666655544322 1234777777766431110
Q ss_pred CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC-CCC
Q 006490 271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP 349 (643)
Q Consensus 271 ~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~p 349 (643)
. .....-++.+|+.||.|++|.++.+|+..++.... ..+
T Consensus 78 --~--------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~ 117 (148)
T 2lmt_A 78 --E--------------------------------------TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVT 117 (148)
T ss_dssp --T--------------------------------------TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCC
T ss_pred --c--------------------------------------cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCcccc
Confidence 0 01124578899999999999999999998887542 111
Q ss_pred -CCCCCCCCCccccCCcccchhhhhh
Q 006490 350 -WDEAPYKDAAETTALGNLTLKGFVS 374 (643)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (643)
............+.+|.|+...|+.
T Consensus 118 ~~e~~~l~~~~D~d~dG~I~~~EF~~ 143 (148)
T 2lmt_A 118 DEEIDEMIREADFDGDGMINYEEFVW 143 (148)
T ss_dssp HHHHHHHHHHHCCSCCSSEEHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 1111112224457778888877765
No 491
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=95.94 E-value=0.031 Score=49.48 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHH
Q 006490 188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 267 (643)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 267 (643)
..++++-...++.+|...|.+++|.++..|+..... ..+...+..++..+.. .. +..+++..|+.+....
T Consensus 8 ~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~-~lg~~~~~~~~~~~~~---~~------~~~i~f~ef~~~~~~~ 77 (153)
T 3i5g_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFS-SLGRVPPDDELNAMLK---EC------PGQLNFTAFLTLFGEK 77 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHH-HTTSCCCHHHHHHHHH---TS------SSCCCSHHHHHTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHH-HcCCCccHHHHHHHHH---hc------cCCccHHHHHHHHHhh
Confidence 346677778899999999999999999999976654 3566666666655442 11 2347788887763200
Q ss_pred HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC
Q 006490 268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 347 (643)
Q Consensus 268 ~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (643)
. . .. ....-++..|+.||.|++|.++.+|+..++....
T Consensus 78 ~----------------------------~-----~~--------~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g- 115 (153)
T 3i5g_B 78 V----------------------------S-----GT--------DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMG- 115 (153)
T ss_dssp T----------------------------T-----TC--------CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSS-
T ss_pred h----------------------------c-----cc--------ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcC-
Confidence 0 0 00 0135688999999999999999999999997652
Q ss_pred CCCCC---CCCCCCccccCCcccchhhhhhh
Q 006490 348 SPWDE---APYKDAAETTALGNLTLKGFVSK 375 (643)
Q Consensus 348 ~p~~~---~~~~~~~~~~~~~~~~~~~~~~~ 375 (643)
.+... ..+......+ +|.|+...|+..
T Consensus 116 ~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~ 145 (153)
T 3i5g_B 116 DNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI 145 (153)
T ss_dssp SCCCHHHHHHHHTTCCEE-TTEECHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCC-cCEEcHHHHHHH
Confidence 22111 0111122234 567776666543
No 492
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=95.91 E-value=0.016 Score=51.40 Aligned_cols=142 Identities=16% Similarity=0.255 Sum_probs=94.3
Q ss_pred chHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 269 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 269 (643)
..+.....+.++|...|.+.++.++..|+...... .+...+..++..+...+. .+ .+..++++.|+.+......
T Consensus 14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d---~~--~~g~i~~~ef~~~~~~~~~ 87 (162)
T 1top_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVD---ED--GSGTIDFEEFLVMMVRQMK 87 (162)
T ss_dssp SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHC---TT--SCCEEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHc---CC--CCCcEeHHHHHHHHHHHhc
Confidence 44566778899999999999999999998766543 466677777666555442 21 1334999999988664431
Q ss_pred cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCCC
Q 006490 270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP 349 (643)
Q Consensus 270 ~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~p 349 (643)
... .......++.+|+.+|.|++|.++.+|+..++.... .+
T Consensus 88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~ 128 (162)
T 1top_A 88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-EH 128 (162)
T ss_dssp HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTT-CC
T ss_pred ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CC
Confidence 100 011355788899999999999999999999987653 11
Q ss_pred CC---CCCCCCCccccCCcccchhhhhhhh
Q 006490 350 WD---EAPYKDAAETTALGNLTLKGFVSKW 376 (643)
Q Consensus 350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w 376 (643)
.. ..........+.+|.|+...|+...
T Consensus 129 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 158 (162)
T 1top_A 129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158 (162)
T ss_dssp CCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 11 1111122334667777777776543
No 493
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.88 E-value=0.072 Score=53.09 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=71.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCCccc-----------ceEEEEEEc-CC---------------
Q 006490 423 VFRCLLFGPQNAGKSALLNSFLERP------FSENYAPTTGE-----------QYAVNVVDQ-PG--------------- 469 (643)
Q Consensus 423 ~~ki~ivG~~nvGKSSLln~l~~~~------~~~~~~~t~~~-----------~~~~~~v~~-~g--------------- 469 (643)
+--|+|+|++|+||||++..|.+.- .......+.+. ...+..+.. .+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 3468999999999999999987421 11000001100 000111110 00
Q ss_pred -CcEEEEEEecCCchhhhh-----hhccHHhh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEE
Q 006490 470 -GNKKTLILQEIPEEGVKK-----ILSNKEAL-----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLL 538 (643)
Q Consensus 470 -~~~~~~i~d~~g~~~~~~-----~~~~~~~~-----~~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvil 538 (643)
....++++||+|...... +.+....+ ..+|.+++|+|++.+ +........+.+.. ++ .-+
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l~~a~~~~~~~-----~i-~gv 254 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGLVQAKIFKEAV-----NV-TGI 254 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHHHHHHHHHHHS-----CC-CEE
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHHHHHHHhcC-----CC-CEE
Confidence 123467899998522111 11111122 248899999999743 22222223333321 22 345
Q ss_pred EEeCCCCCCccccHHHHHHHHHHhCCCCcEEeee
Q 006490 539 IASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 572 (643)
Q Consensus 539 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 572 (643)
|+||.|.... -..+.++....+.+ +.+++.
T Consensus 255 VlTk~D~~~~---gG~~l~~~~~~~~P-i~~i~~ 284 (306)
T 1vma_A 255 ILTKLDGTAK---GGITLAIARELGIP-IKFIGV 284 (306)
T ss_dssp EEECGGGCSC---TTHHHHHHHHHCCC-EEEEEC
T ss_pred EEeCCCCccc---hHHHHHHHHHHCCC-EEEEeC
Confidence 6799996543 22366778888886 666654
No 494
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=95.83 E-value=0.018 Score=53.10 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=89.9
Q ss_pred HHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHHHcCCccc
Q 006490 196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 275 (643)
Q Consensus 196 ~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 275 (643)
+.++++|...|.+.++.++.+|+.... ...+...+..++..+...+.. + .+..++++.|+.+...
T Consensus 27 ~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~---d--~dG~I~~~EF~~~~~~--------- 91 (191)
T 1y1x_A 27 QELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDK---N--HSGEITFDEFKDLHHF--------- 91 (191)
T ss_dssp SCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCT---T--CSSSBCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCC---C--CCCeEcHHHHHHHHHH---------
Confidence 357788899999999999999998776 445556777766666554422 2 1335999999887541
Q ss_pred hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCC-CC-CCCC
Q 006490 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-SP-WDEA 353 (643)
Q Consensus 276 ~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~-~p-~~~~ 353 (643)
...++.+|+.+|.|++|.++.+|+..++..... .+ ....
T Consensus 92 ---------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~ 132 (191)
T 1y1x_A 92 ---------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQ 132 (191)
T ss_dssp ---------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHH
Confidence 135678999999999999999999999886522 11 1111
Q ss_pred CCCCCccccCCcccchhhhhhhhhh
Q 006490 354 PYKDAAETTALGNLTLKGFVSKWAL 378 (643)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~w~~ 378 (643)
........+.+|.|+...|+..+..
T Consensus 133 ~~~~~~D~d~dg~i~~~eF~~~~~~ 157 (191)
T 1y1x_A 133 ALMRKFDRQRRGSLGFDDYVELSIF 157 (191)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 1122344577888999988887653
No 495
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.81 E-value=0.0054 Score=56.61 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 006490 7 SSSRTGVRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 7 ~~~~~~~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
....+.-.|+|+|++|+|||||++.|.+.
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34455567999999999999999999885
No 496
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.79 E-value=0.0046 Score=56.58 Aligned_cols=23 Identities=22% Similarity=0.686 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 006490 13 VRVVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 13 ~kI~lvG~~~vGKSsL~n~l~~~ 35 (643)
.+++|+|++|+|||||++.+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 497
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.66 E-value=0.0032 Score=57.95 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 006490 15 VVVVGDRGTGKSSLIAAAATE 35 (643)
Q Consensus 15 I~lvG~~~vGKSsL~n~l~~~ 35 (643)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999865
No 498
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.65 E-value=0.02 Score=56.87 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEEcCC------------------------------------
Q 006490 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG------------------------------------ 469 (643)
Q Consensus 426 i~ivG~~nvGKSSLln~l~~~~~~~~~~~t~~~~~~~~~v~~~g------------------------------------ 469 (643)
++++|++||||||++..|.+.- ....+..+.+++.+-
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l-------~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~ 180 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAIS-------MLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF 180 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-------HHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHH-------HHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh
Q ss_pred CcEEEEEEecCCchhhhh--hhccHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCC
Q 006490 470 GNKKTLILQEIPEEGVKK--ILSNKEALA--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 545 (643)
Q Consensus 470 ~~~~~~i~d~~g~~~~~~--~~~~~~~~~--~ad~illv~D~s~~~s~~~~~~~~~~i~~~~~~~~~~~pvilv~NK~Dl 545 (643)
....++++||+|...... +......+. .++.+++|+|++.. ...+..+...+... +..-+++ ||.|.
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l------~~~giVl-tk~D~ 251 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV------PVNQYIF-TKIDE 251 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS------CCCEEEE-ECTTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC------CCCEEEE-eCCCc
Q ss_pred CCccccHHHHHHHHHHhCCCCcEEee
Q 006490 546 KPYTMAVQDSARVTQELGIEPPIPVS 571 (643)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~vS 571 (643)
..... .+..+....+.+ +.+++
T Consensus 252 ~~~~g---~~~~~~~~~~~p-i~~i~ 273 (296)
T 2px0_A 252 TTSLG---SVFNILAESKIG-VGFMT 273 (296)
T ss_dssp CSCCH---HHHHHHHTCSCC-CSEEC
T ss_pred ccchh---HHHHHHHHHCcC-EEEEE
No 499
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=95.63 E-value=0.008 Score=53.22 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=91.5
Q ss_pred chHHHHHHHHhhhhhcC-CCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCCcCCCCcChhhHHHHHHHHH
Q 006490 190 LKPRCVRALKRIFIICD-HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 268 (643)
Q Consensus 190 ~~~~~~~~l~~~~~~~~-~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 268 (643)
..+.....++++|...| .+.++.++.+|+...... ++...+..++..+...+. .+ .+..++++.|+.+.....
T Consensus 7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D---~~--~~g~i~~~eF~~~~~~~~ 80 (158)
T 2jnf_A 7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEV-LGIQQTKSTIRQLIDEFD---PF--GNGDIDFDSFKIIGARFL 80 (158)
T ss_dssp SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHH-TTCSCSHHHHHHHHHHHC---TT--CCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhC---CC--CCCcCcHHHHHHHHHHHh
Confidence 34556677899999999 999999999999766544 466677776666555442 21 133499999998876432
Q ss_pred HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCCCC
Q 006490 269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348 (643)
Q Consensus 269 ~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~ 348 (643)
..... | ......++.+|+.+|.|++|.++.+|+..++.....
T Consensus 81 ~~~~~-----------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~- 122 (158)
T 2jnf_A 81 GEEVN-----------------------P--------------EQMQQELREAFRLYDKEGNGYISTDVMREILAELDE- 122 (158)
T ss_dssp CCCCC-----------------------T--------------TTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCT-
T ss_pred ccccc-----------------------h--------------hhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCC-
Confidence 11100 0 011224778999999999999999999988875421
Q ss_pred CCC---CCCCCCCccccCCcccchhhhhhh
Q 006490 349 PWD---EAPYKDAAETTALGNLTLKGFVSK 375 (643)
Q Consensus 349 p~~---~~~~~~~~~~~~~~~~~~~~~~~~ 375 (643)
+.. ...+......+.+|.|+...|+..
T Consensus 123 ~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~ 152 (158)
T 2jnf_A 123 TLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152 (158)
T ss_dssp TCCHHHHHHHHHHHCSSCCSEECSHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 111 111112233466777777777654
No 500
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=95.62 E-value=0.015 Score=55.00 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=91.2
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCChHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh----ccCCcCCCCcChhhHHHHHHH
Q 006490 191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK----QHDGVNDLGLTLSGFLFLHAL 266 (643)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~ 266 (643)
.+.....++++|...|.+.++.++..|+.......++......++..+...+-.. ....-.+..|+++.|+.+...
T Consensus 43 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~ 122 (219)
T 3cs1_A 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM 122 (219)
T ss_dssp SHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHH
Confidence 3445667888999999999999999999876655455545555555443322110 000001335888999887442
Q ss_pred HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecchhHHHHHHHhhhhhcCCCCCCCChhHHhhhhccCC
Q 006490 267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP 346 (643)
Q Consensus 267 ~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~f~~~~f~~~~~~~~~~l~~~~~~~~~~~~~ 346 (643)
... .....-++.+|+.||.|++|.++.+|+..++....
T Consensus 123 ~~~------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g 160 (219)
T 3cs1_A 123 LCY------------------------------------------IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE 160 (219)
T ss_dssp HHH------------------------------------------HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHH
T ss_pred Hhc------------------------------------------cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 210 01134578899999999999999999999886531
Q ss_pred --CC-CCCCCCCCCCccccCCcccchhhhhhhhh
Q 006490 347 --ES-PWDEAPYKDAAETTALGNLTLKGFVSKWA 377 (643)
Q Consensus 347 --~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 377 (643)
.. +.....+......+.+|.|+...|+....
T Consensus 161 ~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 194 (219)
T 3cs1_A 161 AWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194 (219)
T ss_dssp HHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 11 11112222234457788898888876643
Done!