BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006493
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQN 466
EE+ +D + SDKTGTLT N++ K V GV +V L AA MA +E Q+
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAA--MASRVENQD 372
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLK 435
E LG I SDKTGTLT NQM K
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCK 365
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLK 435
E LG I SDKTGTLT NQM K
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCK 366
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLK 435
E LG I SDKTGTLT NQM K
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCK 365
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI SDKTGTLT N+M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI SDKTGTLT N+M
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM 361
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGET 197
E++ VGD+V+V+ PADL +S++ C V+ +L GE+
Sbjct: 158 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGES 197
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 586 PKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQIL 622
PK + E + K+ + +D+ +K + +IVRDEDG IL
Sbjct: 144 PKDELKELKQKVTSKIDYGNKILELDLIVRDEDGNIL 180
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ DKTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGET 197
E++ VGD+V+V+ PADL +S++ C V+ +L GE+
Sbjct: 152 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGES 191
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI S KTGTLT N+M
Sbjct: 334 ETLGSTSTICSXKTGTLTQNRM 355
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLK 435
E LG I S KTGTLT NQM K
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCK 365
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG I SDKTGTLT N+M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLT 40
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLT 40
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAA 454
E L V+ + SDKTGTLT N++ T GV P ++ L A
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKLSLHDPY---TVAGVDPEDLMLTA 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,207,151
Number of Sequences: 62578
Number of extensions: 743616
Number of successful extensions: 1519
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 29
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)