Query 006493
Match_columns 643
No_of_seqs 265 out of 1926
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 02:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_A Na, K-ATPase alpha subu 100.0 1.5E-63 5.1E-68 593.3 24.8 436 46-640 72-527 (1028)
2 3ixz_A Potassium-transporting 100.0 2.5E-62 8.6E-67 583.6 34.9 437 45-640 76-532 (1034)
3 3ar4_A Sarcoplasmic/endoplasmi 100.0 3.2E-62 1.1E-66 581.8 32.9 482 45-640 28-530 (995)
4 1mhs_A Proton pump, plasma mem 100.0 1.7E-58 5.7E-63 537.4 25.1 390 45-638 91-486 (920)
5 3b8c_A ATPase 2, plasma membra 100.0 1.1E-57 3.7E-62 531.0 -12.9 389 45-637 36-434 (885)
6 3rfu_A Copper efflux ATPase; a 100.0 9.9E-43 3.4E-47 398.1 17.9 242 111-438 193-443 (736)
7 3j08_A COPA, copper-exporting 100.0 1.5E-41 5.1E-46 385.6 22.0 240 112-439 102-350 (645)
8 3j09_A COPA, copper-exporting 100.0 5.9E-41 2E-45 385.6 23.0 241 111-439 179-428 (723)
9 2hc8_A PACS, cation-transporti 99.9 2.5E-22 8.6E-27 175.1 5.5 100 130-283 5-104 (113)
10 2kij_A Copper-transporting ATP 99.8 1.4E-20 4.7E-25 167.1 3.8 99 132-284 13-117 (124)
11 3gwi_A Magnesium-transporting 99.3 5.9E-13 2E-17 124.9 2.8 84 525-639 17-100 (170)
12 2yj3_A Copper-transporting ATP 97.7 5.8E-08 2E-12 97.8 0.0 41 397-437 10-50 (263)
13 3a1c_A Probable copper-exporti 97.6 2.8E-05 9.5E-10 78.9 4.5 44 397-440 14-57 (287)
14 3skx_A Copper-exporting P-type 96.7 0.00066 2.2E-08 67.7 3.4 38 403-440 1-38 (280)
15 4fe3_A Cytosolic 5'-nucleotida 90.1 0.095 3.3E-06 52.8 1.7 35 397-432 17-60 (297)
16 1svj_A Potassium-transporting 76.9 4.7 0.00016 36.2 6.5 61 552-637 50-111 (156)
17 2jmz_A Hypothetical protein MJ 51.0 11 0.00039 34.6 3.8 35 137-172 103-137 (186)
18 3ixz_A Potassium-transporting 47.7 64 0.0022 38.1 10.4 24 145-168 197-220 (1034)
19 2lcj_A PAB POLC intein; hydrol 40.8 24 0.00082 32.4 4.3 34 137-171 93-126 (185)
20 1nz9_A Transcription antitermi 30.4 79 0.0027 22.6 4.8 46 155-201 4-49 (58)
21 2kmv_A Copper-transporting ATP 27.9 28 0.00094 32.0 2.4 16 424-439 1-16 (185)
22 1d1n_A Initiation factor 2; be 22.7 92 0.0032 25.4 4.2 20 152-171 78-97 (99)
23 3p42_A Predicted protein; beta 20.9 79 0.0027 30.2 4.2 35 134-168 163-204 (236)
24 3ewi_A N-acylneuraminate cytid 20.5 36 0.0012 30.6 1.5 23 410-432 4-26 (168)
No 1
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=100.00 E-value=1.5e-63 Score=593.27 Aligned_cols=436 Identities=19% Similarity=0.176 Sum_probs=340.0
Q ss_pred ccccCCCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccC--C----C---CCchhhhHHHHHHHHHH
Q 006493 46 MHKKRPLKYCTNYISTTKYNFFSYFPKALFEQFNRVANIYFLIAALLSVTPL--S----P---FSPVSMLLPLAIVVGVS 116 (643)
Q Consensus 46 ~~~~~~~~yg~N~i~~~k~~~~~flp~~l~~~f~~~~~~~~l~~~il~~~~~--~----~---~~~~~~~~~l~~vl~i~ 116 (643)
+.++|+++||+|+++.++...++ +.+++||+++++++++++++++++.+ . . ...+...++++++++++
T Consensus 72 e~~~r~~~~G~N~l~~~~~~~~~---~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~ 148 (1028)
T 2zxe_A 72 RAKEILARDGPNSLTPPPTTPEW---IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVT 148 (1028)
T ss_dssp HHHHHHHHHCCSCCCCCCCCCHH---HHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCCCHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHH
Confidence 45678999999999988654432 78999999999999999999987641 1 0 01233445667788899
Q ss_pred HHHHHHHHHHHhhhhhhh---cceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCC
Q 006493 117 MAKEALEDWRRFMQDKEV---NARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNL 193 (643)
Q Consensus 117 ~i~~~~~~~~~~k~~~~~---n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~L 193 (643)
++.+++++++++++.+.+ .+.+++|+ |||++++|++++|+|||||.|++||.|||||+|+++++ |.||||+|
T Consensus 149 ~~~~~~qe~ka~~~~~~L~~l~~~~a~V~-Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~----~~VdeS~L 223 (1028)
T 2zxe_A 149 GCFSYYQEAKSSRIMDSFKNMVPQQALVI-RDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHG----CKVDNSSL 223 (1028)
T ss_dssp HHHHHHHTCCCCCHHHHHHTTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEE----EEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEEE-ECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEeeCc----EEEEcCcc
Confidence 999999998887776554 45789999 89999999999999999999999999999999999765 89999999
Q ss_pred CCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEEE
Q 006493 194 DGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVIF 273 (643)
Q Consensus 194 tGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv~ 273 (643)
||||.|+.|.+++.. ..+++..|++++||.+.+ |++.|+|++
T Consensus 224 TGES~pv~K~~~~~~-------------------------------------~~~~~~~n~v~~GT~v~~-G~~~~~V~~ 265 (1028)
T 2zxe_A 224 TGESEPQTRSPEFSS-------------------------------------ENPLETRNIAFFSTNCVE-GTARGVVVY 265 (1028)
T ss_dssp HSCCSCEECCSSCCC-------------------------------------SSTTTCSSEECTTCEEEE-EEEEEEEEE
T ss_pred CCCCcceecccCCCC-------------------------------------CCcccccceEEeCceEEc-ceEEEEEEE
Confidence 999999999876432 013344556666666553 459999999
Q ss_pred eccccceec---ccCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCccccCCCCCch
Q 006493 274 TGHDSKVMQ---NATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDVYFNPGKPLV 350 (643)
Q Consensus 274 tG~~Tk~~~---~~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (643)
||.+|++++ +....+.+++++++.+++++.+++++.++++++.++++++.. ..|+
T Consensus 266 tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----~~~~----------------- 323 (1028)
T 2zxe_A 266 TGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILG-----YSWL----------------- 323 (1028)
T ss_dssp CGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCHH-----------------
T ss_pred eccccHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CcHH-----------------
Confidence 999997655 445667789999999999999999988888888777644321 1233
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcCCCccccCc
Q 006493 351 PGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDKTGTLTCNQ 430 (643)
Q Consensus 351 ~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n~ 430 (643)
..+..++.+++.+||++||++++++..+++.+| ++++++||+++++|+||++++||||||||||+|+
T Consensus 324 ---~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~m----------ak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~ 390 (1028)
T 2zxe_A 324 ---EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM----------ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNR 390 (1028)
T ss_dssp ---HHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSS
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH----------hhCCceeccchHhhhhcCceEEeccCCCCCCCCe
Confidence 355667778888999999999999999999998 7899999999999999999999999999999999
Q ss_pred eEEEEEEEcCeecCCCCchHHHHHHHHhhhhhhhhhhhhhccccCCCCccchhhhhcccCCCCccccccCCCCcCcchhc
Q 006493 431 MDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRESANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLM 510 (643)
Q Consensus 431 m~v~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 510 (643)
|+|.++++++..|.....+. . .+..
T Consensus 391 m~v~~~~~~~~~~~~~~~~~-------------------------------------------~-----~~~~------- 415 (1028)
T 2zxe_A 391 MTVAHMWFDNQIHEADTTEN-------------------------------------------Q-----SGAA------- 415 (1028)
T ss_dssp CEEEEEEETTEEEECCCCTT-------------------------------------------C-----CSCC-------
T ss_pred EEEEEEEECCeeeeccCCCC-------------------------------------------c-----cccc-------
Confidence 99999999887664321110 0 0000
Q ss_pred ccCCCCCCChhhHHHHHHHHhhcccccccccCCCCc--eeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCCC
Q 006493 511 DGNWLKEPNVDTLLLFFRILAICHTAIPELNEETGN--LTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKG 588 (643)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~lalch~~~~~~~~~~~~--~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~g 588 (643)
.+......+.++.++++||++..+....... ..+..|||+|.||+++|...|.....
T Consensus 416 -----~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~~---------------- 474 (1028)
T 2zxe_A 416 -----FDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQG---------------- 474 (1028)
T ss_dssp -----CCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHHH----------------
T ss_pred -----cccCCHHHHHHHHHHHhcCCCeeecCCCCCccccceeCCCchHHHHHHHHHHhCCCHHH----------------
Confidence 0012234567889999999987653221100 11236899999999999886432111
Q ss_pred CcceeEEEEEEeecCCCCCceEEEEEEcC---CCeEEEEEeccchhhhhhhhccC
Q 006493 589 QPVEREFKILNLLDFTSKRKRMSVIVRDE---DGQILLLCKGADRLASPLLFNFL 640 (643)
Q Consensus 589 ~~~~~~~~il~~~~F~S~rKrMSViv~~~---~g~~~l~~KGA~e~Il~~c~~~~ 640 (643)
.+..|++++++||+|+|||||++++.+ +|++++|+|||||.|+++|+++.
T Consensus 475 --~~~~~~~~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~ 527 (1028)
T 2zxe_A 475 --MRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTIL 527 (1028)
T ss_dssp --HHHHSCEEEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEEC
T ss_pred --HHHhCceEEEeccCcccceEEEEEeccCCCCCcEEEEEeCCcHHHHHHhhhhh
Confidence 135688999999999999999999974 57889999999999999998753
No 2
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=2.5e-62 Score=583.63 Aligned_cols=437 Identities=17% Similarity=0.159 Sum_probs=346.7
Q ss_pred CccccCCCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--CC-------CCCchhhhHHHHHHHHH
Q 006493 45 HMHKKRPLKYCTNYISTTKYNFFSYFPKALFEQFNRVANIYFLIAALLSVTP--LS-------PFSPVSMLLPLAIVVGV 115 (643)
Q Consensus 45 ~~~~~~~~~yg~N~i~~~k~~~~~flp~~l~~~f~~~~~~~~l~~~il~~~~--~~-------~~~~~~~~~~l~~vl~i 115 (643)
++.++|+++||+|+++.++...++ +.+++||+++++++++++++++++. +. ..+.+...+++++++++
T Consensus 76 ~ea~~rl~~~G~N~l~~~~~~~~~---~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i 152 (1034)
T 3ixz_A 76 SLAAELLLRDGPNALRPPRGTPEY---VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVV 152 (1034)
T ss_pred HHHHHHHHhhCCCCCCCCCCCCHH---HHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeH
Confidence 345678999999999988776543 8899999999999999998888653 11 11223445667778889
Q ss_pred HHHHHHHHHHHHhhhhhhhc---ceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccC
Q 006493 116 SMAKEALEDWRRFMQDKEVN---ARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMN 192 (643)
Q Consensus 116 ~~i~~~~~~~~~~k~~~~~n---~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~ 192 (643)
+++.+++++++++++.+.++ +.+++|+ |||++++|++++|||||||.|++||.||||++|+++++ +.||||+
T Consensus 153 ~~~~~~~qe~ka~~al~~L~~l~~~~a~Vi-RdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~----l~VdES~ 227 (1034)
T 3ixz_A 153 TGCFGYYQEFKSTNIIASFKNLVPQQATVI-RDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG----RKVDNSS 227 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEE-ECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCC----ceEEecc
Confidence 99999999999999876655 4789999 89999999999999999999999999999999999876 7899999
Q ss_pred CCCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEE
Q 006493 193 LDGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVI 272 (643)
Q Consensus 193 LtGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv 272 (643)
|||||.|+.|.+..... ......+..|+||.+.+|+ +.|+|+
T Consensus 228 LTGES~pv~K~~~~~~~-----------------~~~~~~n~~f~GT~v~~G~---------------------~~~vVv 269 (1034)
T 3ixz_A 228 LTGESEPQTRSPECTHE-----------------SPLETRNIAFFSTMCLEGT---------------------AQGLVV 269 (1034)
T ss_pred cCCCCCCeeccCCCccc-----------------cccccccceecceeEEeec---------------------ceEEEE
Confidence 99999999998764320 0112234668888888887 999999
Q ss_pred Eeccccceecc---cCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCccccCCCCCc
Q 006493 273 FTGHDSKVMQN---ATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDVYFNPGKPL 349 (643)
Q Consensus 273 ~tG~~Tk~~~~---~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (643)
+||.+|.+++. ......+++|+++.+++++.++..++++++++.++++.++.. .|
T Consensus 270 ~tG~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~----------------- 327 (1034)
T 3ixz_A 270 NTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGY-----TF----------------- 327 (1034)
T ss_pred eehhhhHhhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hH-----------------
Confidence 99999966554 445667789999999999999988888888777766544221 12
Q ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcCCCccccC
Q 006493 350 VPGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDKTGTLTCN 429 (643)
Q Consensus 350 ~~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n 429 (643)
...+..++.+++.+||++||++++++..+++.+| ++++++||++.++|+||++++||||||||||+|
T Consensus 328 ---~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rm----------ak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n 394 (1034)
T 3ixz_A 328 ---LRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRL----------ASKNCVVKNLEAVETLGSTSVICSDKTGTLTQN 394 (1034)
T ss_pred ---HHHHHHHHHHHHheeccccHHHHHHHHHHHHHHH----------hhCCeEecChHHHHhhcCCcEEEcCCCCCcccC
Confidence 3577788999999999999999999999999998 889999999999999999999999999999999
Q ss_pred ceEEEEEEEcCeecCCCCchHHHHHHHHhhhhhhhhhhhhhccccCCCCccchhhhhcccCCCCccccccCCCCcCcchh
Q 006493 430 QMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRESANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRL 509 (643)
Q Consensus 430 ~m~v~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 509 (643)
+|+|.++++++..|..+..+.. .+.
T Consensus 395 ~m~v~~~~~~~~~~~~~~~~~~------------------------------------------------~~~------- 419 (1034)
T 3ixz_A 395 RMTVSHLWFDNHIHSADTTEDQ------------------------------------------------SGQ------- 419 (1034)
T ss_pred eEEEEEEEECCccccccCcccc------------------------------------------------ccc-------
Confidence 9999999998876654322100 000
Q ss_pred cccCCCCCCChhhHHHHHHHHhhcccccccccCCCC--ceeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCC
Q 006493 510 MDGNWLKEPNVDTLLLFFRILAICHTAIPELNEETG--NLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPK 587 (643)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~lalch~~~~~~~~~~~--~~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~ 587 (643)
...........++.++++||++.....++.. ...+..|+|+|.||+.++...|.....
T Consensus 420 -----~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~~--------------- 479 (1034)
T 3ixz_A 420 -----TFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMG--------------- 479 (1034)
T ss_pred -----ccCcCCHHHHHHHHHHHHhccceeccCcCCCcccCceeccCchHHHHHHHHHHhCCChHH---------------
Confidence 0001233566788999999998764332110 112346899999999999987654321
Q ss_pred CCcceeEEEEEEeecCCCCCceEEEEEEcC---CCeEEEEEeccchhhhhhhhccC
Q 006493 588 GQPVEREFKILNLLDFTSKRKRMSVIVRDE---DGQILLLCKGADRLASPLLFNFL 640 (643)
Q Consensus 588 g~~~~~~~~il~~~~F~S~rKrMSViv~~~---~g~~~l~~KGA~e~Il~~c~~~~ 640 (643)
.+..|++++.+||+|+||||+++++.+ ++++++|+|||||.|+++|++++
T Consensus 480 ---~~~~~~~~~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~ 532 (1034)
T 3ixz_A 480 ---YRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSIL 532 (1034)
T ss_pred ---HHHhCcceEEeeecCCCceEEEEEEecCCCCccEEEEEeCChHHHHHHhHHhh
Confidence 246788999999999999999988764 37899999999999999998764
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=100.00 E-value=3.2e-62 Score=581.84 Aligned_cols=482 Identities=20% Similarity=0.181 Sum_probs=341.2
Q ss_pred CccccCCCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC------CCchhhhHHHHHHHHHHH
Q 006493 45 HMHKKRPLKYCTNYISTTKYNFFSYFPKALFEQFNRVANIYFLIAALLSVTP-LSP------FSPVSMLLPLAIVVGVSM 117 (643)
Q Consensus 45 ~~~~~~~~~yg~N~i~~~k~~~~~flp~~l~~~f~~~~~~~~l~~~il~~~~-~~~------~~~~~~~~~l~~vl~i~~ 117 (643)
++.++|+++||+|+++.+++..++ +.+++||++++++++++++++++++ +.. ..|+..++ ++++++++.
T Consensus 28 ~e~~~r~~~~G~N~l~~~~~~~~~---~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~ 103 (995)
T 3ar4_A 28 DQVKRHLEKYGHNELPAEEGKSLW---ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV-ILLILIANA 103 (995)
T ss_dssp HHHHHHHHHHCCSSCCCCCCCCHH---HHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHH-hhHHHHHHH
Confidence 345678999999999998765442 8999999999999999999999876 322 13444433 334556777
Q ss_pred HHHHHHHHHHhhhhhh---hcceEEEEEeCCCe--EEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccC
Q 006493 118 AKEALEDWRRFMQDKE---VNARKVSVHVGNGV--FSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMN 192 (643)
Q Consensus 118 i~~~~~~~~~~k~~~~---~n~~~~~V~~r~g~--~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~ 192 (643)
+...+++++.+++.+. +.+.+++|+ |||+ .++|++++|+|||||.|++||.|||||+|++++. +.|+||||+
T Consensus 104 ~i~~~qe~~a~~al~~L~~~~~~~a~V~-R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s--~~l~VdeS~ 180 (995)
T 3ar4_A 104 IVGVWQERNAENAIEALKEYEPEMGKVY-RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKS--TTLRVDQSI 180 (995)
T ss_dssp HHHHHHHHHCCCHHHHHGGGSCSEEEEE-BTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECS--SCEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCeEEEE-eCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEEEEee--ceEEEEccc
Confidence 7788888887766544 456789999 8877 6999999999999999999999999999987654 559999999
Q ss_pred CCCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEE
Q 006493 193 LDGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVI 272 (643)
Q Consensus 193 LtGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv 272 (643)
|||||.|+.|.+++... + .....+..|++++||.+.+ |++.|+|+
T Consensus 181 LTGES~pv~K~~~~~~~-------------------~---------------~~~~~~~~~~v~~GT~v~~-G~~~~~V~ 225 (995)
T 3ar4_A 181 LTGESVSVIKHTEPVPD-------------------P---------------RAVNQDKKNMLFSGTNIAA-GKALGIVA 225 (995)
T ss_dssp HHCCCSCEEECCSCCCC-------------------T---------------TCCGGGCTTEECTTCEEEE-CEEEEEEE
T ss_pred ccCCCcceeccccccCC-------------------c---------------ccCcccccceEecCCEEEc-ceEEEEEE
Confidence 99999999998864320 0 0112345566666666664 45999999
Q ss_pred Eeccccceecc---cCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccC-CCCccccCCCCCccccCCCCC
Q 006493 273 FTGHDSKVMQN---ATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQ-TPQWWYLKPKETDVYFNPGKP 348 (643)
Q Consensus 273 ~tG~~Tk~~~~---~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 348 (643)
+||.+|++++. ....+.+++|+++.+++++.++..++++++++.++++..+.... ....|+
T Consensus 226 ~tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 290 (995)
T 3ar4_A 226 TTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWI--------------- 290 (995)
T ss_dssp ECGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHH---------------
T ss_pred EcCcchHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH---------------
Confidence 99999977654 44667788999999999999998888888877766543211110 001122
Q ss_pred chhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcCCCcccc
Q 006493 349 LVPGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDKTGTLTC 428 (643)
Q Consensus 349 ~~~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~ 428 (643)
......|..++.+++.+||++||++++++..+++.++ +++++++|+++++|+||++++||||||||||+
T Consensus 291 -~~~~~~~~~ai~l~v~aiP~~Lp~~vt~~la~~~~~m----------a~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~ 359 (995)
T 3ar4_A 291 -RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM----------AKKNAIVRSLPSVETLGCTSVICSDKTGTLTT 359 (995)
T ss_dssp -HHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HHTTEEESCTTHHHHHHTCCEEEEESTTTTBC
T ss_pred -HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----------ccCCcEeccchhhhhhcCceEEEecCCCCccc
Confidence 1223356678889999999999999999999999888 78899999999999999999999999999999
Q ss_pred CceEEEEEEEcCeecCCCCchHHHHHHHHhhhhhhhhhhhhhccccCCCCccchhhhhcccCCCCccccccCCCCcCcch
Q 006493 429 NQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRESANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSR 508 (643)
Q Consensus 429 n~m~v~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 508 (643)
|+|+|+++++.+..++...... +..+.. .+ .......
T Consensus 360 n~m~v~~~~~~~~~~~~~~~~~-----------------------------~~~~~~--~~------------~~p~~~~ 396 (995)
T 3ar4_A 360 NQMSVCKMFIIDKVDGDFCSLN-----------------------------EFSITG--ST------------YAPEGEV 396 (995)
T ss_dssp CCCEEEEEEEEEEEETTEEEEE-----------------------------EEEECC--SS------------SSSCCCE
T ss_pred CceEEEEEEecCcccCcccccc-----------------------------eeeccC--CC------------cCCcccc
Confidence 9999999998664433100000 000000 00 0000000
Q ss_pred hcccCCCCCCChhhHHHHHHHHhhcccccccccCCCCceeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCCC
Q 006493 509 LMDGNWLKEPNVDTLLLFFRILAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKG 588 (643)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~lalch~~~~~~~~~~~~~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~g 588 (643)
...+........+.+..++.++++||++.+..++..+.. ...|||+|.||+.+|++.|+ +... ...+..........
T Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~-~~~g~p~E~Al~~~a~~~g~-~~~~-~~~i~~~~~~~~~~ 473 (995)
T 3ar4_A 397 LKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVY-EKVGEATETALTTLVEKMNV-FNTE-VRNLSKVERANACN 473 (995)
T ss_dssp EETTEECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEE-EEESCHHHHHHHHHHHHHCT-TCCC-CTTSCTTTSTTHHH
T ss_pred ccccccccccccHHHHHHHHHHHHcCCCcccccCCCCce-eecCCccHHHHHHHHHHcCC-cccc-ccccccccccccch
Confidence 000000011223456788899999999876543322222 23589999999999999887 2110 00000000000000
Q ss_pred CcceeEEEEEEeecCCCCCceEEEEEEcCCC-----eEEEEEeccchhhhhhhhccC
Q 006493 589 QPVEREFKILNLLDFTSKRKRMSVIVRDEDG-----QILLLCKGADRLASPLLFNFL 640 (643)
Q Consensus 589 ~~~~~~~~il~~~~F~S~rKrMSViv~~~~g-----~~~l~~KGA~e~Il~~c~~~~ 640 (643)
...+..|++++++||+|+||||||+++.++| ++++|+|||||.|+++|+++.
T Consensus 474 ~~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~ 530 (995)
T 3ar4_A 474 SVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVR 530 (995)
T ss_dssp HHHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEE
T ss_pred hhhhhhCceEEEeecCCCCCeeEEEEecCCCCccccceEEEEcCCHHHHHHhcchhh
Confidence 0013579999999999999999999998766 689999999999999998754
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=100.00 E-value=1.7e-58 Score=537.44 Aligned_cols=390 Identities=19% Similarity=0.195 Sum_probs=315.3
Q ss_pred CccccCCCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 006493 45 HMHKKRPLKYCTNYISTTKYNFFSYFPKALFEQFNRVANIYFLIAALLSVTPLSPFSPVSMLLPLAIVVGVSMAKEALED 124 (643)
Q Consensus 45 ~~~~~~~~~yg~N~i~~~k~~~~~flp~~l~~~f~~~~~~~~l~~~il~~~~~~~~~~~~~~~~l~~vl~i~~i~~~~~~ 124 (643)
++.++|+++||+|+++.+++++| ..|++||.++++++++++++++++. ..|..++ .++++++++.+.+++++
T Consensus 91 ~ea~~r~~~~G~N~l~~~~~~~~----~~~l~~f~~~~~~ll~~aai~s~~~---g~~~~~~-~i~~vv~i~~~i~~~qe 162 (920)
T 1mhs_A 91 EEVVQRRRKYGLNQMKEEKENHF----LKFLGFFVGPIQFVMEGAAVLAAGL---EDWVDFG-VICGLLLLNAVVGFVQE 162 (920)
T ss_dssp HHHHHHHHHTSSSSCCCCCCSSH----HHHTHHHHHHHHHHHHHHHHHCTTC---SCSSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34567899999999998888776 6788999999999999999988774 4566554 44566778888999999
Q ss_pred HHHhhhhhhhcc---eEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCCCCccceee
Q 006493 125 WRRFMQDKEVNA---RKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKV 201 (643)
Q Consensus 125 ~~~~k~~~~~n~---~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~LtGEs~p~~ 201 (643)
++++++.+.+++ .+++|+ |||++++|++++|+|||||.|++||.|||||+|++++ +.+.||||+|||||.|+.
T Consensus 163 ~~a~~a~~~L~~l~~~~a~V~-RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~---~~l~VDES~LTGES~PV~ 238 (920)
T 1mhs_A 163 FQAGSIVDELKKTLALKAVVL-RDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDD---AFLQVDQSALTGESLAVD 238 (920)
T ss_dssp HHHHHHHHTTTTCCCSSCEEE-CSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEES---SCCEEBCTTTSSCCCCEE
T ss_pred HHHHHHHHHhhccCCCEEEEE-ECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEecC---ceeeeeccccCCCCcceE
Confidence 999998776654 679999 8999999999999999999999999999999999976 226999999999999999
Q ss_pred ecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEEEecccccee
Q 006493 202 KRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVIFTGHDSKVM 281 (643)
Q Consensus 202 K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv~tG~~Tk~~ 281 (643)
|.+++.. |+||.+.+|. +.++|++||.+|+++
T Consensus 239 K~~gd~v---------------------------~sGT~v~~G~---------------------~~~~V~~tG~~T~~g 270 (920)
T 1mhs_A 239 KHKGDQV---------------------------FASSAVKRGE---------------------AFVVITATGDNTFVG 270 (920)
T ss_dssp CCSSCEE---------------------------CSCBCCSCCC---------------------EEEEEEECSTTCSTT
T ss_pred ecCCCee---------------------------ecCceEecce---------------------EEEEEEEeCCcCHHH
Confidence 9876433 8888888887 999999999999887
Q ss_pred ccc---CCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCccccCCCCCchhHHHHHHH
Q 006493 282 QNA---TTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDVYFNPGKPLVPGLAHLVT 358 (643)
Q Consensus 282 ~~~---~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
+.. .....+++++++.++++..++++++++++++.++.+++. . ..| ...+..
T Consensus 271 ~I~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~~~~~~-~----~~~--------------------~~~l~~ 325 (920)
T 1mhs_A 271 RAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYR-S----NPI--------------------VQILEF 325 (920)
T ss_dssp TTTSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-T----CCH--------------------HHHHHH
T ss_pred HHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----CcH--------------------HHHHHH
Confidence 754 455667899999999999888777666665544432110 0 011 246777
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcCCCccccCceEEEEEEE
Q 006493 359 ALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSV 438 (643)
Q Consensus 359 ~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~i 438 (643)
++.+++.+||++||++++++..+++.++ +++++++|++.++|+||++++||||||||||+|+|+|.+++.
T Consensus 326 av~llV~aiP~aLp~~vti~la~g~~~m----------ak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~ 395 (920)
T 1mhs_A 326 TLAITIIGVPVGLPAVVTTTMAVGAAYL----------AKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYT 395 (920)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHH----------HHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBC
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHH----------HhCCeEEecCchhhhhccCcEEEECCCCCccccceeEEEEee
Confidence 8889999999999999999999999988 788999999999999999999999999999999999986642
Q ss_pred cCeecCCCCchHHHHHHHHhhhhhhhhhhhhhccccCCCCccchhhhhcccCCCCccccccCCCCcCcchhcccCCCCCC
Q 006493 439 AGTAYGVSPSEVELAAAKQMAIDLEEQNRESANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEP 518 (643)
Q Consensus 439 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 518 (643)
.+. . + +
T Consensus 396 ~~g---~--~---------------------------------------------------------------------~ 401 (920)
T 1mhs_A 396 VAG---V--D---------------------------------------------------------------------P 401 (920)
T ss_dssp CSC---C--C---------------------------------------------------------------------C
T ss_pred cCC---C--C---------------------------------------------------------------------H
Confidence 110 0 0 0
Q ss_pred ChhhHHHHHHHHhhcccccccccCCCCceeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCCCCcceeEEEEE
Q 006493 519 NVDTLLLFFRILAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQPVEREFKIL 598 (643)
Q Consensus 519 ~~~~~~~~~~~lalch~~~~~~~~~~~~~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~g~~~~~~~~il 598 (643)
.+++.+.++|+... . . .++|+|.|+++++.+.+.... ....|+++
T Consensus 402 -----~~ll~~a~l~~~~~----~-~------~~~P~e~Al~~~~~~~~~~~~-------------------~~~~~~~~ 446 (920)
T 1mhs_A 402 -----EDLMLTACLAASRK----K-K------GIDAIDKAFLKSLKYYPRAKS-------------------VLSKYKVL 446 (920)
T ss_dssp -----THHHHHHHHSCCCS----S-C------SCCSHHHHHHHHHHHSSSCCG-------------------GGSCCCEE
T ss_pred -----HHHHHHHHHhcCCc----c-c------CCChHHHHHHHHHHhcccchh-------------------hcccccee
Confidence 02345566776531 1 1 149999999999987654100 13457899
Q ss_pred EeecCCCCCceEEEEEEcCCCeEEEEEeccchhhhhhhhc
Q 006493 599 NLLDFTSKRKRMSVIVRDEDGQILLLCKGADRLASPLLFN 638 (643)
Q Consensus 599 ~~~~F~S~rKrMSViv~~~~g~~~l~~KGA~e~Il~~c~~ 638 (643)
+.+||+|.||||+++++.++|+.++|+|||||.|+++|+.
T Consensus 447 ~~~pF~s~~k~ms~iv~~~~g~~~~~~KGape~il~~c~~ 486 (920)
T 1mhs_A 447 QFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEE 486 (920)
T ss_dssp EEEEEETTTTEEEEEECCSSSSCEEEEEECHHHHHHHCCC
T ss_pred EEeeccCCCCeEEEEEEeCCCcEEEEEeCCHHHHHHhccc
Confidence 9999999999999999987888889999999999999964
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-57 Score=531.02 Aligned_cols=389 Identities=18% Similarity=0.164 Sum_probs=301.9
Q ss_pred CccccCCCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhccCC----CCCchhhhHHHHHHHHHHHHHH
Q 006493 45 HMHKKRPLKYCTNYISTTKYNFFSYFPKALFEQFNRVANIYFLIAALLSVTPLS----PFSPVSMLLPLAIVVGVSMAKE 120 (643)
Q Consensus 45 ~~~~~~~~~yg~N~i~~~k~~~~~flp~~l~~~f~~~~~~~~l~~~il~~~~~~----~~~~~~~~~~l~~vl~i~~i~~ 120 (643)
++.++|+++||+|+++.+++++| +.|++||.++++++++++++++++... +.+|++++. ++++++++.+.+
T Consensus 36 ~e~~~r~~~~G~N~l~~~~~~~~----~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~-I~~~v~i~~~l~ 110 (885)
T 3b8c_A 36 QEGEDRIQIFGPNKLEEKKESKL----LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVG-IICLLVINSTIS 110 (885)
T ss_dssp HHHHHHSSSCCSCCTTTTCCCTT----SSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHH-HHHHTTTTTTTT
T ss_pred HHHHHHHHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHH-HHHHHHHHHHHH
Confidence 35567899999999999887766 567789999999999999999887511 125666553 445566777778
Q ss_pred HHHHHHHhhhhhhh---cceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCCCCcc
Q 006493 121 ALEDWRRFMQDKEV---NARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGET 197 (643)
Q Consensus 121 ~~~~~~~~k~~~~~---n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~LtGEs 197 (643)
++++++.+++.+.+ .+.+++|+ |||++++|++++|+|||||.|++||.|||||+|+++++ +.||||+|||||
T Consensus 111 ~~qe~ka~~al~~L~~~~~~~a~V~-RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~----l~VdES~LTGES 185 (885)
T 3b8c_A 111 FIEENNAGNAAAALMAGLAPKTKVL-RDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDP----LKVDQSALTGES 185 (885)
T ss_dssp TTTTTTTTTHHHHTTTSCSCCCCCC-CSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSC----BCCCCCSTTCCS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcCc----ccccccccCCCC
Confidence 88888887776554 45789999 89999999999999999999999999999999999764 689999999999
Q ss_pred ceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEEEeccc
Q 006493 198 NLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVIFTGHD 277 (643)
Q Consensus 198 ~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv~tG~~ 277 (643)
.|+.|.+++.. |+||.+.+|. +.++|++||.+
T Consensus 186 ~Pv~K~~g~~v---------------------------~~GT~v~~G~---------------------~~~~V~~tG~~ 217 (885)
T 3b8c_A 186 LPVTKHPGQEV---------------------------FSGSTCKQGE---------------------IEAVVIATGVH 217 (885)
T ss_dssp SCCCBSSCCCC---------------------------CSCCCCCSCC---------------------CCCBCCSCTTT
T ss_pred cceEecCCCcc---------------------------ccCeEEeeeE---------------------EEEEEEEcCcc
Confidence 99999987544 8888888887 99999999999
Q ss_pred cceecccCC--CCCccChHHHHHHHHHHHHHH-HHHHHHHHHHHHhhheeccCCCCccccCCCCCccccCCCCCchhHHH
Q 006493 278 SKVMQNATT--SPSKRSGIEKKMDKIIFILFA-ILVLISLISSIGFAVKINYQTPQWWYLKPKETDVYFNPGKPLVPGLA 354 (643)
Q Consensus 278 Tk~~~~~~~--~~~k~s~l~~~~~~~~~~~~~-~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (643)
|.+++.... ...+++++++.++++..+++. +++.++++.++.+.+. . ..|. .
T Consensus 218 T~~g~i~~lv~~~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~--------------------~ 272 (885)
T 3b8c_A 218 TFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQ-R----RKYR--------------------D 272 (885)
T ss_dssp TTSTTCCCSCCSCSCCSTTTTTTHHHHHHHHHHHHHHHHHHSTTTTTTT-C----SCST--------------------T
T ss_pred cHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c----CcHH--------------------H
Confidence 987764431 245689999999999876433 2222332222222110 0 1121 2
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcCCCccccCceEEE
Q 006493 355 HLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFL 434 (643)
Q Consensus 355 ~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~ 434 (643)
.+..++.+++.+||++||++++++..+++.++ +++++++|++.++|+||++++||||||||||+|+|+|.
T Consensus 273 ~~~~~v~llv~aiP~aLp~~vti~la~g~~r~----------ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~ 342 (885)
T 3b8c_A 273 GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL----------SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVD 342 (885)
T ss_dssp HHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHH----------TTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HhCCeEeCCchHHHHHhCCCEEEECCCCCcccCceEEE
Confidence 56788999999999999999999999988888 89999999999999999999999999999999999986
Q ss_pred EEEEcCeecCCCCchHHHHHHHHhhhhhhhhhhhhhccccCCCCccchhhhhcccCCCCccccccCCCCcCcchhcccCC
Q 006493 435 KCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRESANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNW 514 (643)
Q Consensus 435 ~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 514 (643)
++++. .++.+
T Consensus 343 ~~~~~--~~~~~-------------------------------------------------------------------- 352 (885)
T 3b8c_A 343 KNLVE--VFCKG-------------------------------------------------------------------- 352 (885)
T ss_dssp SCCCC--SSCSS--------------------------------------------------------------------
T ss_pred EEEEe--ccCCC--------------------------------------------------------------------
Confidence 32210 01000
Q ss_pred CCCCChhhHHHHHHHHhhcccccccccCCCCceeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCCCCcceeE
Q 006493 515 LKEPNVDTLLLFFRILAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQPVERE 594 (643)
Q Consensus 515 ~~~~~~~~~~~~~~~lalch~~~~~~~~~~~~~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~g~~~~~~ 594 (643)
. ..++++...++|+... .++|+|.|+++++.+..- .+..
T Consensus 353 ---~---~~~~ll~~aa~~~~~~-------------~~~p~~~Al~~~~~~~~~----------------------~~~~ 391 (885)
T 3b8c_A 353 ---V---EKDQVLLFAAMASRVE-------------NQDAIDAAMVGMLADPKE----------------------ARAG 391 (885)
T ss_dssp ---T---THHHHHHHHHHHCCSS-------------SCCSHHHHHHHTTCCTTC----------------------CCCS
T ss_pred ---C---CHHHHHHHHHHHhCCC-------------CCCchHHHHHHHhhchhh----------------------Hhhc
Confidence 0 0124566677887531 269999999988642100 1345
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCeEEEEEeccchhhhhhhh
Q 006493 595 FKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADRLASPLLF 637 (643)
Q Consensus 595 ~~il~~~~F~S~rKrMSViv~~~~g~~~l~~KGA~e~Il~~c~ 637 (643)
+++++.+||+|.||||+++++..+|+.++|+|||||.|+++|+
T Consensus 392 ~~~~~~~pF~s~~k~~sv~~~~~~g~~~~~~KGa~e~il~~c~ 434 (885)
T 3b8c_A 392 IREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAK 434 (885)
T ss_dssp SCCBCCCCCCTTTCCCCCBBCSSSSCBCBCCCCSGGGTSSSSC
T ss_pred CceeecccCCcccceEEEEEEecCCcEEEEEeCCHHHHHHhcc
Confidence 7788999999999999999987778888999999999999996
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=100.00 E-value=9.9e-43 Score=398.09 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh------cceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCC
Q 006493 111 IVVGVSMAKEALEDWRRFMQDKEV------NARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDG 184 (643)
Q Consensus 111 ~vl~i~~i~~~~~~~~~~k~~~~~------n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g 184 (643)
+++++..+..++|.+.++|+.+.+ .+.+++|++|||++++|++++|+|||+|+|++||.|||||+|++ |
T Consensus 193 ~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~-----G 267 (736)
T 3rfu_A 193 VITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQE-----G 267 (736)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECS-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEE-----C
Confidence 444556677888888888865443 35788888569999999999999999999999999999999999 4
Q ss_pred eEEEEccCCCCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecC
Q 006493 185 ICYVETMNLDGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNT 264 (643)
Q Consensus 185 ~~~Vdes~LtGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t 264 (643)
.+.||||+|||||.|+.|.+++.. |+||++.+|.
T Consensus 268 ~~~VDES~LTGES~Pv~K~~gd~v---------------------------~~Gt~~~~G~------------------- 301 (736)
T 3rfu_A 268 RSFVDESMVTGEPIPVAKEASAKV---------------------------IGATINQTGS------------------- 301 (736)
T ss_dssp CEEEECSSSTTCSSCEEECTTCEE---------------------------CTTCEEESCC-------------------
T ss_pred ceEeeecccCCccccEEeccCCcC---------------------------CCceEeccce-------------------
Confidence 489999999999999999988655 8899999888
Q ss_pred CeEEEEEEEecccccee---cccCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCcc
Q 006493 265 AHVYGSVIFTGHDSKVM---QNATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDV 341 (643)
Q Consensus 265 ~~~~gvVv~tG~~Tk~~---~~~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~ 341 (643)
+.+.|++||.+|.++ +.....+.+++++|+..++++.++++++++++++++++|+++.... .|.
T Consensus 302 --~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~~~---~~~-------- 368 (736)
T 3rfu_A 302 --FVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQP---ALS-------- 368 (736)
T ss_dssp --CCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS---STT--------
T ss_pred --EEEEEEEechhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---hHH--------
Confidence 999999999999554 4445566778999999999999999999999999988876643211 121
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEc
Q 006493 342 YFNPGKPLVPGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSD 421 (643)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~D 421 (643)
..+..++.+++.+|||+|+++++++...+..++ +++++++|+++++|+||++++||||
T Consensus 369 ------------~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~----------a~~gilvk~~~alE~l~~v~~i~fD 426 (736)
T 3rfu_A 369 ------------YGLIAAVSVLIIACPCALGLATPMSIMVGVGKG----------AQSGVLIKNAEALERMEKVNTLVVD 426 (736)
T ss_dssp ------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHH----------HHTTEEESCHHHHHHHTSCCEEEEC
T ss_pred ------------HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH----------hhcceeechHHHHHHhcCCCEEEEe
Confidence 467789999999999999999999999999888 7899999999999999999999999
Q ss_pred CCCccccCceEEEEEEE
Q 006493 422 KTGTLTCNQMDFLKCSV 438 (643)
Q Consensus 422 KTGTLT~n~m~v~~~~i 438 (643)
||||||+|+|+|.+++.
T Consensus 427 KTGTLT~g~~~v~~i~~ 443 (736)
T 3rfu_A 427 KTGTLTEGHPKLTRIVT 443 (736)
T ss_dssp CBTTTBCSSCEEEEEEE
T ss_pred CCCCCcCCceEEEEEEe
Confidence 99999999999999873
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.5e-41 Score=385.58 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh------hhcceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCe
Q 006493 112 VVGVSMAKEALEDWRRFMQDK------EVNARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGI 185 (643)
Q Consensus 112 vl~i~~i~~~~~~~~~~k~~~------~~n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~ 185 (643)
++++..+..++|++.++|+.+ .+.+.+++|+ |||++++|++++|+|||+|.|++||.|||||+|+++ .
T Consensus 102 i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~-r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G-----~ 175 (645)
T 3j08_A 102 LLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVI-RDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG-----E 175 (645)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC-----c
Confidence 344456778889888887643 3345789999 899999999999999999999999999999999994 4
Q ss_pred EEEEccCCCCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCC
Q 006493 186 CYVETMNLDGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTA 265 (643)
Q Consensus 186 ~~Vdes~LtGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~ 265 (643)
++||||+|||||.|+.|.+++.. |+||.+.+|.
T Consensus 176 ~~VdeS~LTGES~Pv~K~~g~~v---------------------------~~Gt~~~~g~-------------------- 208 (645)
T 3j08_A 176 SYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTGV-------------------- 208 (645)
T ss_dssp EEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSSC--------------------
T ss_pred EEEEcccccCCCCceecCCCCEe---------------------------eccEEEecCc--------------------
Confidence 99999999999999999887654 7888888777
Q ss_pred eEEEEEEEeccccc---eecccCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCccc
Q 006493 266 HVYGSVIFTGHDSK---VMQNATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDVY 342 (643)
Q Consensus 266 ~~~gvVv~tG~~Tk---~~~~~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~ 342 (643)
+.++|++||.+|. +.+.....+.+++++++.+++++.++++++++++++++++|+++... +|.
T Consensus 209 -~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~----~~~--------- 274 (645)
T 3j08_A 209 -LKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----PLL--------- 274 (645)
T ss_dssp -EEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSC----SCC---------
T ss_pred -EEEEEEEcCCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cHH---------
Confidence 9999999999994 45566777888999999999999999999998888887765443211 121
Q ss_pred cCCCCCchhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEcC
Q 006493 343 FNPGKPLVPGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSDK 422 (643)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~DK 422 (643)
..+..++.+++.+|||+|+++++++...+..++ +++++++|+++++|+||++++|||||
T Consensus 275 -----------~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v~~i~fDK 333 (645)
T 3j08_A 275 -----------FAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKVTAVIFDK 333 (645)
T ss_dssp -----------CTTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTCCCCSSTTHHHHGGGCCEEEEEG
T ss_pred -----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HHCCeEecCchHHHHhhCCCEEEEcC
Confidence 134567888889999999999999999998888 78999999999999999999999999
Q ss_pred CCccccCceEEEEEEEc
Q 006493 423 TGTLTCNQMDFLKCSVA 439 (643)
Q Consensus 423 TGTLT~n~m~v~~~~i~ 439 (643)
|||||+|+|+|.+++..
T Consensus 334 TGTLT~~~~~v~~~~~~ 350 (645)
T 3j08_A 334 TGTLTKGKPEVTDLVPL 350 (645)
T ss_dssp GGTSSSSCCEEEEEEES
T ss_pred cccccCCCeEEEEEEeC
Confidence 99999999999998754
No 8
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.9e-41 Score=385.64 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh------hcceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCC
Q 006493 111 IVVGVSMAKEALEDWRRFMQDKE------VNARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDG 184 (643)
Q Consensus 111 ~vl~i~~i~~~~~~~~~~k~~~~------~n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g 184 (643)
+++++..+..++|++.++|+.+. +.+.+++|+ |||++++|++++|+|||+|.|++||.|||||+|+++
T Consensus 179 ~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~-r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G----- 252 (723)
T 3j09_A 179 LLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVI-RDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG----- 252 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC-----
Confidence 34445567788899888876443 345789999 899999999999999999999999999999999994
Q ss_pred eEEEEccCCCCccceeeecccccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecC
Q 006493 185 ICYVETMNLDGETNLKVKRAMEATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNT 264 (643)
Q Consensus 185 ~~~Vdes~LtGEs~p~~K~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t 264 (643)
.++||||+|||||.|+.|.+++.. |+||++.+|.
T Consensus 253 ~~~VdeS~LTGES~pv~K~~g~~v---------------------------~~Gt~~~~g~------------------- 286 (723)
T 3j09_A 253 ESYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTGV------------------- 286 (723)
T ss_dssp CEEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSSC-------------------
T ss_pred CeEEecccccCCCcceeecCCCee---------------------------ccceEEecCc-------------------
Confidence 499999999999999999887654 7888888777
Q ss_pred CeEEEEEEEeccccc---eecccCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCCCccccCCCCCcc
Q 006493 265 AHVYGSVIFTGHDSK---VMQNATTSPSKRSGIEKKMDKIIFILFAILVLISLISSIGFAVKINYQTPQWWYLKPKETDV 341 (643)
Q Consensus 265 ~~~~gvVv~tG~~Tk---~~~~~~~~~~k~s~l~~~~~~~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~ 341 (643)
+.++|++||.+|. +.+.....+.+++++++.+++++.++++++++++++++++|+++... +|.
T Consensus 287 --~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~----~~~-------- 352 (723)
T 3j09_A 287 --LKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----PLL-------- 352 (723)
T ss_dssp --EEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTC----TTC--------
T ss_pred --EEEEEEEecCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cHH--------
Confidence 9999999999994 45566777888999999999999999999998888887765443211 121
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcccccccccCCCCceeccCcchhhcccccEEEEc
Q 006493 342 YFNPGKPLVPGLAHLVTALILYGYLIPISLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTSNLNEELGQVDTILSD 421 (643)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~ll~~~iP~~L~v~l~~~~~~~~~~i~~d~~m~~~~~~~~i~vk~~~~~e~Lg~v~~i~~D 421 (643)
..+..++.+++.+||++|+++++++...+..++ +++++++|+++++|+||++++||||
T Consensus 353 ------------~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v~~i~fD 410 (723)
T 3j09_A 353 ------------FAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKVTAVIFD 410 (723)
T ss_dssp ------------CSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTCEESSTTHHHHGGGCCEEEEE
T ss_pred ------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----------HHCCeEEeChHHHHHhhcCCEEEEc
Confidence 256678899999999999999999999998888 7899999999999999999999999
Q ss_pred CCCccccCceEEEEEEEc
Q 006493 422 KTGTLTCNQMDFLKCSVA 439 (643)
Q Consensus 422 KTGTLT~n~m~v~~~~i~ 439 (643)
||||||+|+|+|.+++..
T Consensus 411 KTGTLT~g~~~v~~~~~~ 428 (723)
T 3j09_A 411 KTGTLTKGKPEVTDLVPL 428 (723)
T ss_dssp HHHHTSCSCCEEEEEEES
T ss_pred CCCccccCceEEEEEEeC
Confidence 999999999999998754
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.85 E-value=2.5e-22 Score=175.13 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=90.6
Q ss_pred hhhhhcceEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCCCCccceeeecccccCC
Q 006493 130 QDKEVNARKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVKRAMEATS 209 (643)
Q Consensus 130 ~~~~~n~~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~LtGEs~p~~K~~~~~~~ 209 (643)
+...+.+..++|+ |+|+++++++++|+|||+|.|++||.|||||+|++++ +.||||+|||||.|+.|.+++..
T Consensus 5 ~L~~l~p~~a~v~-r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~-----~~vdeS~LTGEs~pv~k~~g~~v- 77 (113)
T 2hc8_A 5 KLVGLQAKTAVVI-RDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-----SYVDESMISGEPVPVLKSKGDEV- 77 (113)
T ss_dssp HHHHHSCSEEEEE-ETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC-----EEEECHHHHCCSSCEEECTTCEE-
T ss_pred HHhcCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEce-----EEEEccccCCCCccEEECCCCEE-
Confidence 3456678899999 8999999999999999999999999999999999954 89999999999999999987544
Q ss_pred CCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEEEeccccceecc
Q 006493 210 PLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVIFTGHDSKVMQN 283 (643)
Q Consensus 210 ~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv~tG~~Tk~~~~ 283 (643)
|+||++.+|. +.++|++||.+|.+++.
T Consensus 78 --------------------------~aGt~~~~G~---------------------~~~~V~~~g~~T~~~~i 104 (113)
T 2hc8_A 78 --------------------------FGATINNTGV---------------------LKIRATRVGGETLLAQI 104 (113)
T ss_dssp --------------------------CTTCEECSSC---------------------EEEEEEECGGGSHHHHH
T ss_pred --------------------------EeCCEEeece---------------------EEEEEEEecCcCHHHHH
Confidence 8999999998 99999999999977654
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=167.08 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=87.0
Q ss_pred hhhcceEEEEEeCCCe------EEEeeeeccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCCCCccceeeeccc
Q 006493 132 KEVNARKVSVHVGNGV------FSYKPWEKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVKRAM 205 (643)
Q Consensus 132 ~~~n~~~~~V~~r~g~------~~~i~~~~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~LtGEs~p~~K~~~ 205 (643)
..+.+..++|+ |+|. ++.|++++|+|||+|.|++||.|||||+|++++ +.||||+|||||.|+.|.++
T Consensus 13 ~~l~p~~a~v~-r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~-----~~vdeS~LTGEs~pv~k~~g 86 (124)
T 2kij_A 13 ISLQATEATIV-TLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH-----SMVDESLITGEAMPVAKKPG 86 (124)
T ss_dssp HHTCCSEEEEE-ECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCC-----CEEECTTTTCCSSCEECCTT
T ss_pred hccCCCEEEEE-ECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEcc-----EEEEeccccCCCccEEeCCC
Confidence 44567899999 6553 688999999999999999999999999999955 78999999999999999987
Q ss_pred ccCCCCCchhhhcccceEEEeeCCCCCceEEEEEEEECCeeeccCCCCeEEeceeeecCCeEEEEEEEeccccceeccc
Q 006493 206 EATSPLNEDEAFKEFTGTVKCENPNPSLYTFVGNIEYDRELYAIDPSQILLRDSKLRNTAHVYGSVIFTGHDSKVMQNA 284 (643)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~f~Gt~~~~g~~~~l~~~ni~~rgs~l~~t~~~~gvVv~tG~~Tk~~~~~ 284 (643)
+.. |+||++.+|. +.++|++||.+|.+++..
T Consensus 87 ~~v---------------------------~aGt~~~~G~---------------------~~~~v~~~g~~T~~~~I~ 117 (124)
T 2kij_A 87 STV---------------------------IAGSINQNGS---------------------LLICATHVGADTTLSQIV 117 (124)
T ss_dssp EEE---------------------------CTTCEEESSC---------------------CEEEECSCTTTCHHHHHH
T ss_pred CEE---------------------------EcCCEEeeeE---------------------EEEEEEEecccCHHHHHH
Confidence 544 8999999998 999999999999776543
No 11
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli}
Probab=99.30 E-value=5.9e-13 Score=124.93 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=65.6
Q ss_pred HHHHHHhhcccccccccCCCCceeEecCChhHHHHHHHHHHcCcEEEEecCCeEEEEecCCCCCCcceeEEEEEEeecCC
Q 006493 525 LFFRILAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQPVEREFKILNLLDFT 604 (643)
Q Consensus 525 ~~~~~lalch~~~~~~~~~~~~~~y~~gsp~E~All~~a~~~g~~~~~r~~~~~~~~~~~~~~g~~~~~~~~il~~~~F~ 604 (643)
..+...++|+..... .+||+|.|+++++...+... ....|++++.+|||
T Consensus 17 ~vl~~a~L~s~~~~~-----------~~n~~d~Ail~~~~~~~~~~--------------------~~~~~~~~~eiPFd 65 (170)
T 3gwi_A 17 RVLHSAWLNSHYQTG-----------LKNLLDTAVLEGTDEESARS--------------------LASRWQKIDEIPFD 65 (170)
T ss_dssp HHHHHHHHHHHHCCS-----------CCCHHHHHHHHTSCHHHHHH--------------------HHHHSEEEEEECCC
T ss_pred HHHHHHHHcCCCCCC-----------CCChHHHHHHHHHHhcChhh--------------------hhhcCeEEeeEecC
Confidence 455666677643211 26999999999875433210 14568999999999
Q ss_pred CCCceEEEEEEcCCCeEEEEEeccchhhhhhhhcc
Q 006493 605 SKRKRMSVIVRDEDGQILLLCKGADRLASPLLFNF 639 (643)
Q Consensus 605 S~rKrMSViv~~~~g~~~l~~KGA~e~Il~~c~~~ 639 (643)
|+||||||+++.++|++++|+|||||+|+++|+.+
T Consensus 66 s~rKrmsvv~~~~~g~~~l~~KGApE~IL~~C~~~ 100 (170)
T 3gwi_A 66 FERRRMSVVVAENTEHHQLVCKGALQEILNVCSQV 100 (170)
T ss_dssp TTTCEEEEEEESSSSEEEEEEEECHHHHHTTEEEE
T ss_pred cccCcEEEEEEeCCCCEEEEEcCCcHHHHHHhHHH
Confidence 99999999999888889999999999999999875
No 12
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=97.69 E-value=5.8e-08 Score=97.76 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCCCceeccCcchhhcccccEEEEcCCCccccCceEEEEEE
Q 006493 397 SGIPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCS 437 (643)
Q Consensus 397 ~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~ 437 (643)
+++++++|++.++|.|++|++||||||||||+|+|.+..+.
T Consensus 10 ~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~ 50 (263)
T 2yj3_A 10 LHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI 50 (263)
Confidence 78999999999999999999999999999999999998874
No 13
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=97.64 E-value=2.8e-05 Score=78.95 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCCCceeccCcchhhcccccEEEEcCCCccccCceEEEEEEEcC
Q 006493 397 SGIPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSVAG 440 (643)
Q Consensus 397 ~~~~i~vk~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~i~~ 440 (643)
+++++++|++.++|.|++++.||||||||||.+.+.+..++..+
T Consensus 14 ~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~ 57 (287)
T 3a1c_A 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN 57 (287)
T ss_dssp CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESS
T ss_pred HHCCEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEeCC
Confidence 78999999999999999999999999999999999999887654
No 14
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=96.75 E-value=0.00066 Score=67.68 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=31.7
Q ss_pred eccCcchhhcccccEEEEcCCCccccCceEEEEEEEcC
Q 006493 403 ARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSVAG 440 (643)
Q Consensus 403 vk~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~i~~ 440 (643)
+|++.++|.|++++.|+||++||||.|+|+|..+...+
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~ 38 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFN 38 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESS
T ss_pred CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecC
Confidence 47889999999999999999999999999999987544
No 15
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=90.06 E-value=0.095 Score=52.80 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=27.3
Q ss_pred CCCCceeccCcchhhc---------ccccEEEEcCCCccccCceE
Q 006493 397 SGIPAQARTSNLNEEL---------GQVDTILSDKTGTLTCNQMD 432 (643)
Q Consensus 397 ~~~~i~vk~~~~~e~L---------g~v~~i~~DKTGTLT~n~m~ 432 (643)
.+.++++|++..+|++ .++. |+||||||||+....
T Consensus 17 ~k~~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~ 60 (297)
T 4fe3_A 17 QKSSVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYN 60 (297)
T ss_dssp TSTTEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEET
T ss_pred hcCCeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccC
Confidence 6788999999998873 3343 678999999986543
No 16
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=76.94 E-value=4.7 Score=36.23 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHHc-CcEEEEecCCeEEEEecCCCCCCcceeEEEEEEeecCCCCCceEEEEEEcCCCeEEEEEeccch
Q 006493 552 ESPDEAAFLVAAREF-GFEFYRRTQSSVFIRERYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADR 630 (643)
Q Consensus 552 gsp~E~All~~a~~~-g~~~~~r~~~~~~~~~~~~~~g~~~~~~~~il~~~~F~S~rKrMSViv~~~~g~~~l~~KGA~e 630 (643)
..|.-.|++++|++. |+.... ... ......+|++.-++..|.+ +| .-+.||+++
T Consensus 50 eHPla~AIv~~A~~~~~l~~~~------------------~~~--~~~~~~~F~a~~G~~Gv~v---~G--~~v~vGn~~ 104 (156)
T 1svj_A 50 ETPEGRSIVILAKQRFNLRERD------------------VQS--LHATFVPFTAQSRMSGINI---DN--RMIRKGSVD 104 (156)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCC------------------HHH--HTCEEEEEETTTTEEEEEE---TT--EEEEEEEHH
T ss_pred CCHHHHHHHHHHHHhcCCCccc------------------ccc--cccceeeccccCCCCeEEE---CC--EEEEEeCcH
Confidence 589999999999986 654211 000 0112458999888788855 56 468899988
Q ss_pred hhhhhhh
Q 006493 631 LASPLLF 637 (643)
Q Consensus 631 ~Il~~c~ 637 (643)
.|...+.
T Consensus 105 ~i~~l~~ 111 (156)
T 1svj_A 105 AIRRHVE 111 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 17
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=50.97 E-value=11 Score=34.64 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=27.6
Q ss_pred eEEEEEeCCCeEEEeeeeccccCcEEEeccCcccCc
Q 006493 137 RKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFPA 172 (643)
Q Consensus 137 ~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iPa 172 (643)
-++.+. ++|++..+.+.+|++||.|.+..+..++.
T Consensus 103 Hp~~v~-~~g~~~w~~A~eLk~GD~v~~~~~~~~~~ 137 (186)
T 2jmz_A 103 HPVYIS-KTGEVLEINAEMVKVGDYIYIPKNNTINL 137 (186)
T ss_dssp CEEEEE-ETTEEEEEEGGGCCTTSEEEEECSSSEEE
T ss_pred CEEEEe-CCCeEEEEEhhcCCCCCEEEecccCCccc
Confidence 467777 67888899999999999999876544443
No 18
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=47.69 E-value=64 Score=38.11 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=20.5
Q ss_pred CCeEEEeeeeccccCcEEEeccCc
Q 006493 145 NGVFSYKPWEKIQVGDIVKVEKDQ 168 (643)
Q Consensus 145 ~g~~~~i~~~~LvvGDIV~l~~ge 168 (643)
-|....+...|.+|-|.+.|+.++
T Consensus 197 ~GDiV~l~~Gd~VPAD~~ll~~~~ 220 (1034)
T 3ixz_A 197 VGDLVEMKGGDRVPADIRILQAQG 220 (1034)
T ss_pred CCcEEEEcCCceecCCeEEEEeCC
Confidence 478899999999999999988654
No 19
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=40.77 E-value=24 Score=32.35 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=27.4
Q ss_pred eEEEEEeCCCeEEEeeeeccccCcEEEeccCcccC
Q 006493 137 RKVSVHVGNGVFSYKPWEKIQVGDIVKVEKDQFFP 171 (643)
Q Consensus 137 ~~~~V~~r~g~~~~i~~~~LvvGDIV~l~~ge~iP 171 (643)
.++.+. ++|+...+.+.+|++||.|.+..++..|
T Consensus 93 H~~~v~-~~g~~~~~~A~eLk~GD~v~v~~~~~~~ 126 (185)
T 2lcj_A 93 HPVLVY-ENGRFIEKRAFEVKEGDKVLVSELELVE 126 (185)
T ss_dssp SEEEEE-ETTEEEEEEGGGCCTTCEEEECCCCCSC
T ss_pred CEEEEe-cCCeEEEEEHHHCCCCCEEEEccccccc
Confidence 456667 6788889999999999999998766444
No 20
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=30.44 E-value=79 Score=22.64 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=35.7
Q ss_pred ccccCcEEEeccCcccCccEEEEeecCCCCeEEEEccCCCCccceee
Q 006493 155 KIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKV 201 (643)
Q Consensus 155 ~LvvGDIV~l~~ge~iPaD~ill~~s~~~g~~~Vdes~LtGEs~p~~ 201 (643)
++.+||.|.+..|..-=..|.+.+-+.+.+.+.|.-+++ |...|+.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~-Gr~t~v~ 49 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIF-GRETPVE 49 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESS-SSEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeC-CCEEEEE
Confidence 578999999999998888999999876667788876654 4444543
No 21
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*
Probab=27.87 E-value=28 Score=32.02 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=14.0
Q ss_pred CccccCceEEEEEEEc
Q 006493 424 GTLTCNQMDFLKCSVA 439 (643)
Q Consensus 424 GTLT~n~m~v~~~~i~ 439 (643)
||||+|++.|..+...
T Consensus 1 GTLT~G~p~V~~v~~~ 16 (185)
T 2kmv_A 1 SFTMHGTPVVNQVKVL 16 (185)
T ss_dssp CCCCSCCCEEEEEEEC
T ss_pred CCCcCCcEEEEEEEec
Confidence 8999999999988643
No 22
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=22.71 E-value=92 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.7
Q ss_pred eeeccccCcEEEeccCcccC
Q 006493 152 PWEKIQVGDIVKVEKDQFFP 171 (643)
Q Consensus 152 ~~~~LvvGDIV~l~~ge~iP 171 (643)
.+.|+++||+|..-.-..+|
T Consensus 78 ~~~dik~GD~Ie~ye~~ev~ 97 (99)
T 1d1n_A 78 NFNDIKEGDVIEAYVMQEVA 97 (99)
T ss_dssp TCSSCSSCSEEEEECCSCCC
T ss_pred CcCCCCCCCEEEEEEEEEEc
Confidence 46799999999876655554
No 23
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=20.91 E-value=79 Score=30.16 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=26.5
Q ss_pred hcceEEEEEeCCCeEEEeee-------eccccCcEEEeccCc
Q 006493 134 VNARKVSVHVGNGVFSYKPW-------EKIQVGDIVKVEKDQ 168 (643)
Q Consensus 134 ~n~~~~~V~~r~g~~~~i~~-------~~LvvGDIV~l~~ge 168 (643)
-....+.|++.||+....+. .+|.|||+|.|--..
T Consensus 163 Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~ 204 (236)
T 3p42_A 163 ADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSA 204 (236)
T ss_dssp BCSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCT
T ss_pred CCCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCc
Confidence 34567888878999887763 479999999876443
No 24
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=20.50 E-value=36 Score=30.56 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=18.0
Q ss_pred hhcccccEEEEcCCCccccCceE
Q 006493 410 EELGQVDTILSDKTGTLTCNQMD 432 (643)
Q Consensus 410 e~Lg~v~~i~~DKTGTLT~n~m~ 432 (643)
|.+..+..|++|--||||.+.+.
T Consensus 4 ~~~~~ikliv~D~DGtL~d~~~~ 26 (168)
T 3ewi_A 4 EKLKEIKLLVCNIDGCLTNGHIY 26 (168)
T ss_dssp ---CCCCEEEEECCCCCSCSCCB
T ss_pred hhHhcCcEEEEeCccceECCcEE
Confidence 45678999999999999998764
Done!