BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006494
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALR 329
P F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H L PNY L+
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 330 NLIVQWCEKNNVE 342
+LI WCE N +E
Sbjct: 66 SLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKRHIAREGAIPAIIEILQNG 456
I + GG+ LV+LL+ DS++Q+ AL N++ DE K I G + ++++L +
Sbjct: 40 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK-AIVDAGGVEVLVKLLTST 98
Query: 457 TNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515
+E ++ +A AL ++ S DE + + G+ LV LL +K+AA AL N++
Sbjct: 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158
Query: 516 QSNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLASHP 557
+AI AG + L+KLL + EA L +AS P
Sbjct: 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 392 NPDNRI-LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAI 449
PD I I + GG+ LV+LL+ DS++Q+ AL N++ T+ + I G + +
Sbjct: 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217
Query: 450 IEILQNGTNEARENSAAAL 468
++L + +E ++ + AL
Sbjct: 218 QKLLTSTDSEVQKEAQRAL 236
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
G + LVQLLS P+ +I + + AL N++ + + + GA+PA++++L + +
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
+ AL++LS + +E V + +P LV LL + + ++A AL N++ +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLAS----HPEGRNEIGRLSFIETL 572
+ +A I AG +P+L++LL ++ EAL L +AS + E G L +E L
Sbjct: 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE 459
G + LVQLLS P+ +I + + AL N++ ++ +E +E LQ+ NE
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 397 ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQN 455
+ I +GGI LV +L P + H +T L NL L + + R G + ++ +L N
Sbjct: 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-N 286
Query: 456 GTNEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALF 510
TN + A L +L E+++++ G LVN++R Y + + L
Sbjct: 287 KTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 511 NLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570
LS+ SNK ++AG + +L L D + +V L L+ L+ + G +
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLG 402
Query: 571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRK 628
TLV+++ + CA +L L NN + Q G E LV + R G
Sbjct: 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462
Query: 629 ANSLLQHMSKRE 640
A L+H++ R
Sbjct: 463 AICALRHLTSRH 474
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENI 609
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 19/222 (8%)
Query: 409 VQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAA 467
VQ L+ P S++ +H V L+N D E R AIP + ++L + +A
Sbjct: 121 VQRLAEP-SQMLKHAVVNLINYQDDAELATR------AIPELTKLLNDEDQVVVNKAAVM 173
Query: 468 LFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATA------LFNLSINQSNKSR 521
+ LS + +R + P +V+ + +++ D TA L NLS ++
Sbjct: 174 VHQLSKKEASRHAIMR---SPQMVSAI-VRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229
Query: 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLS-FIETLVEIIKNGT 580
K+G IP+L+ +L ++ A++ L L H EG RL+ ++ +V ++
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289
Query: 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
K T L L N L L G + LV I R T
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 7/247 (2%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L
Sbjct: 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 153
Query: 458 NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSIN 515
+ + L L+ + E+++++ G LVN++R Y + + L LS+
Sbjct: 154 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEI 575
SNK ++AG + +L L D + +V L L+ L+ + G + TLV++
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQL 271
Query: 576 IKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKANSLL 633
+ + CA +L L NN + Q G E LV + R G A L
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
Query: 634 QHMSKRE 640
+H++ R
Sbjct: 332 RHLTSRH 338
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 473
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
G + LVQLLS P+ +I + + AL N++ + + + GA+PA++++L + +
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
+ AL++LS + +E V + +P LV LL + + ++A AL N++ +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
+ +A+K AG P+L +L + EA L+ + SH
Sbjct: 171 EQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQSH 210
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 98 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 156
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 157 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 214
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 215 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 272
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 273 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 332
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 333 CALRHLTSRH 342
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 359 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 418
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 419 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 477
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 478 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 526
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 82 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 141
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 142 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 159
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 160 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 217
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 218 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 275
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 276 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 335
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 336 CALRHLTSRH 345
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 362 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 421
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 422 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 480
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 481 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 529
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 85 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 144
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 145 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 153
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 154 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 211
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 212 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 269
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 330 CALRHLTSRH 339
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 356 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 415
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 416 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 474
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 475 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 523
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 79 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 138
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 139 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 158
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 159 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 216
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 217 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 274
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 275 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 334
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 335 CALRHLTSRH 344
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 361 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 420
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 421 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 479
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 480 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 528
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 84 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 143
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 144 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 140
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 141 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 198
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 199 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 256
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 317 CALRHLTSRH 326
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 343 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 402
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 403 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 461
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 462 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 510
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 66 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 125
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 126 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 157
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 158 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 215
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 216 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 273
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 334 CALRHLTSRH 343
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 360 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 419
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 420 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 478
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 479 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 527
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 83 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 142
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 143 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 144
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 145 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 202
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 203 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 260
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 261 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 320
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 321 CALRHLTSRH 330
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 347 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 406
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 407 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 465
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 466 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 514
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 70 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 129
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 130 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 187
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 153
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 154 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 211
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 212 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 269
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 330 CALRHLTSRH 339
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 356 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 415
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 416 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 474
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 475 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 523
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 79 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 138
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 139 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
G + LVQLLS P+ +I + + AL N++ + + + GA+PA++++L + +
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
+ AL++LS + +E V + +P LV LL + + ++A AL N++ +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
+ +A+K AG + L +L + + EA L+ L SH
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 155
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 156 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 271
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 332 CALRHLTSRH 341
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 476
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 140
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 157
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 158 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 215
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 216 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 273
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 334 CALRHLTSRH 343
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 360 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 419
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 420 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 478
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 479 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 527
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 83 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 142
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 143 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 140
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 141 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 198
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 199 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 256
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 317 CALRHLTSRH 326
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 343 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 402
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 403 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 461
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 462 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 510
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 66 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 125
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 126 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV++L P + + +T L NL L + + R G + ++ +L N T
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 142
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN++R Y + + L L
Sbjct: 143 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 200
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG + +L L D + +V L L+ L+ + G + TL
Sbjct: 201 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 258
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN + Q G E LV + R G A
Sbjct: 259 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 318
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 319 CALRHLTSRH 328
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 345 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 404
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 405 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 463
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 464 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 512
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K+L ++ A++ L L H EG R
Sbjct: 68 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 127
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ +V ++ K T L L N L L G + LV I R T
Sbjct: 128 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 185
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
G + LVQLLS P+ +I + + AL N++ + + + GA+PA++++L + +
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
+ AL++LS + +E V + +P LV LL + + ++A AL N++ +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
+ +A+K AG + L +L + + EA L+ L SH
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 180
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 181 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 240
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 241 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 279
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 220
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 280
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 281 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 309
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 125 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 182
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 183 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 242
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 243 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 281
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 222
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 282
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 283 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 311
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 145
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 206 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 244
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 185
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 141
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 202 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 240
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 181
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 146
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 186
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 141
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 202 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 240
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 181
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 146
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 186
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 196
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 236
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 145
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 206 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 244
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 185
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 196
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 236
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 196
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 236
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 146
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 207 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 186
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 172
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 173 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 232
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 233 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 271
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 22/236 (9%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 212
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 272
Query: 508 ALFNLSINQSNKS-RAIKAGIIPSLLKLLEDKALGMVDEA-LSILQLLASHPEGRNEIGR 565
A+ N+ ++ + I AG + LL + + EA ++ + A + ++
Sbjct: 273 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621
+ LV ++ K ++ A ++ I G E +V + CG
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEA-----------AWAITNYTSGGTVEQIVYLVHCG 377
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GAI ++ +L
Sbjct: 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AV 152
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 153 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 212
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 192
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252
Query: 508 ALFNLSINQSNKS-RAIKAG---IIPSLL 532
A+ N+ ++ + I AG + PSLL
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLL 281
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 272 EFLC-PVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
++LC ++ E+M +P I +G TY+R+ I+ L P T L L PN A++
Sbjct: 12 DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKE 71
Query: 331 LIVQWCEKN 339
+I + ++N
Sbjct: 72 VIDAFIQEN 80
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ D + R + + GA+ ++ +L
Sbjct: 90 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL--AV 147
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ ++ + P LV LL + D A+
Sbjct: 148 PDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAI 207
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 208 SYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPAL 246
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ G + PL+ LL+ PD ++ T T L NL ++ I A E +P
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWT-LSNLCRNKNPAPPIDAVEQILPT 187
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E ++ A+ L+ R+ MV +P LV LL + A
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALR 247
Query: 508 ALFNLSINQSNKSR-AIKAG---IIPSLL 532
A+ N+ +++ I AG + PSLL
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLL 276
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 272 EFLC-PVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
++LC ++ E+M +P I +G TY+R+ I+ L P T L L PN A++
Sbjct: 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKE 164
Query: 331 LIVQWCEKN 339
+I + ++N
Sbjct: 165 VIDAFIQEN 173
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 272 EFLC-PVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
++LC ++ E+M +P I +G TY+R+ I+ L P T L L PN A++
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 63
Query: 331 LIVQWCEKN 339
+I + +N
Sbjct: 64 VIDAFISEN 72
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 381 SVMKIRMLSKENPDNRIL---IANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSLDETN 436
+V +R L+ +P+ + + N GI +V+LL+ P+ + + T+ + NL+L N
Sbjct: 332 AVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPAN 391
Query: 437 KRHIAREGAIPAIIEILQNGTNEARENSAA---------------------ALFSLSMLD 475
+ IP ++++L +A+ + AA AL L+
Sbjct: 392 HAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDP 451
Query: 476 ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA-GIIPSLLKL 534
NR+ + LN IP V LL Y S+ + A + + AI A G L++L
Sbjct: 452 MNRMEIFRLNTIPLFVQLL-YSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMEL 510
Query: 535 LEDKALGMVDEALSIL 550
L + G A ++L
Sbjct: 511 LHSRNEGTATYAAAVL 526
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 509 LFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLS- 567
L NLS ++ K+G IP+L+++L ++ A++ L L + EG RL+
Sbjct: 86 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 145
Query: 568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR 619
++ +V ++ PK T L L N L L G + LV+I R
Sbjct: 146 GLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMR 197
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 385 IRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRHIARE 443
+++L+ N +++++I NGG + LVQ++ +Y K+ T L LS+ +NK I
Sbjct: 169 LQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEA 228
Query: 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKK 503
G + A+ + L + + +N L +LS + + + ++ I LVN L +
Sbjct: 229 GGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKI--LVNQLSVDDVNVLT 286
Query: 504 DAATALFNLSINQS-NKSRAIKAGIIPSLLKLL---EDKALGMVDEALSILQLLAS-HPE 558
A L NL+ N S NK+ + + +L+ + DK + + A+ L+ L S HPE
Sbjct: 287 CATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKD-DITEPAVCALRHLTSRHPE 345
Query: 559 G 559
Sbjct: 346 A 346
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%)
Query: 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE 451
+P NR+ I I VQLL IQ L L+ D+ I EGA ++E
Sbjct: 450 DPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLME 509
Query: 452 ILQNGTNEARENSAAALFSLS 472
+L + +AA LF +S
Sbjct: 510 LLHSRNEGTATYAAAVLFRIS 530
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 272 EFLC-PVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
++LC ++ E+M +P I +G TY+R+ I+ L P T L L PN A++
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 266
Query: 331 LIVQWCEKN 339
+I + +N
Sbjct: 267 VIDAFISEN 275
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGT 457
+ + G I + LL+ P + I E V AL N++ + R + + GAI ++ +L
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL--AV 215
Query: 458 NEARENSAAAL----FSLSMLDENRVMVGNLNGI----PPLVNLLRYGSIRGKKDAATAL 509
+ + L ++LS L N+ L+ + P LV LL + D+ A+
Sbjct: 216 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275
Query: 510 FNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEAL 547
L+ + + +K G++P L+KLL L +V AL
Sbjct: 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 22/236 (9%)
Query: 396 RILIANNGGIRPLVQLLSYPD------SKIQEHTVTALLNLSLDETNKRHI-AREGAIPA 448
R L+ +G I PL+ LL+ PD ++ T T L NL ++ + A E +P
Sbjct: 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPT 255
Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAAT 507
++ +L + E +S A+ L+ R+ MV +P LV LL + A
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315
Query: 508 ALFNLSINQSNKS-RAIKAGIIPSLLKLLEDKALGMVDEA-LSILQLLASHPEGRNEIGR 565
A+ N+ ++ + I AG + LL + + EA ++ + A + ++
Sbjct: 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 375
Query: 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621
+ LV ++ K ++ A ++ I G E +V + CG
Sbjct: 376 HGLVPFLVGVLSKADFKTQKAA-----------AWAITNYTSGGTVEQIVYLVHCG 420
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
I +GGI LV+ L P + + +T L NL L + + R G + + +L N T
Sbjct: 39 IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALL-NKT 97
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
N + A L +L E+++++ G LVN+ R Y + + L L
Sbjct: 98 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLKVL 155
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
S+ SNK ++AG +L L D + +V L L+ L+ + G + TL
Sbjct: 156 SVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGXEGLLGTL 213
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
V+++ + CA +L L NN Q G E LV + R G A
Sbjct: 214 VQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAI 273
Query: 631 SLLQHMSKRE 640
L+H++ R
Sbjct: 274 CALRHLTSRH 283
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 407 PLVQLLSYPDSK--IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------- 453
P+V L +P S + + TV + NL+L N + +GAIP ++++L
Sbjct: 300 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 359
Query: 454 -QNGTN----------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG- 501
GT E E AL L+ NR+++ LN IP V LL Y I
Sbjct: 360 SMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 418
Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSIL 550
++ AA L L+ ++ G L +LL + G+ A ++L
Sbjct: 419 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 467
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
A L NLS ++ K+G IP+L+K L ++ A++ L L H EG R
Sbjct: 23 AGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVR 82
Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
L+ ++ V ++ K T L L N L L G + LV I R T
Sbjct: 83 LAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYT 140
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 335
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 336 LVSQGCIKPLCDLLE 350
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 335
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 336 LVSQGCIKPLCDLLE 350
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 424 LVSQGCIKPLCDLLE 438
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR-HIAREGAIPAIIEIL- 453
RI+I G + ++LLS +QE V AL N++ D T R ++ +P ++++
Sbjct: 98 RIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 156
Query: 454 -QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY----GSIRGKKDAATA 508
QN R A+++LS L + + P +N+L + DA A
Sbjct: 157 KQNRLTMTRN----AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA 212
Query: 509 LFNLSINQSNKSRA-IKAGIIPSLLKLLEDKALGMVDEAL 547
L LS ++K +A I AG+ L++LL +V AL
Sbjct: 213 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 252
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 386 RMLSKE-NPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNL-SLDETNKRHIAR 442
++LSKE NP +I+ G + V+ L ++ +Q + L N+ S + R + +
Sbjct: 43 KLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ 102
Query: 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLL-RYGSI 499
GA+P IE+L + + +E + AL +++ D R V + N +PPL+ L + +
Sbjct: 103 AGAVPIFIELLSSEFEDVQEQAVWALGNIAG-DSTMCRDYVLDCNILPPLLQLFSKQNRL 161
Query: 500 RGKKDAATALFNLSINQS 517
++A AL NL +S
Sbjct: 162 TMTRNAVWALSNLCRGKS 179
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 396 RILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR-HIAREGAIPAIIEIL- 453
RI+I G + ++LLS +QE V AL N++ D T R ++ +P ++++
Sbjct: 101 RIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 159
Query: 454 -QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY----GSIRGKKDAATA 508
QN R A+++LS L + + P +N+L + DA A
Sbjct: 160 KQNRLTMTRN----AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA 215
Query: 509 LFNLSINQSNKSRA-IKAGIIPSLLKLLEDKALGMVDEAL 547
L LS ++K +A I AG+ L++LL +V AL
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 386 RMLSKE-NPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNL-SLDETNKRHIAR 442
++LSKE NP +I+ G + V+ L ++ +Q + L N+ S + R + +
Sbjct: 46 KLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ 105
Query: 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLL-RYGSI 499
GA+P IE+L + + +E + AL +++ D R V + N +PPL+ L + +
Sbjct: 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAG-DSTMCRDYVLDCNILPPLLQLFSKQNRL 164
Query: 500 RGKKDAATALFNLSINQS 517
++A AL NL +S
Sbjct: 165 TMTRNAVWALSNLCRGKS 182
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 337 LVSQGCIKPLCDLLE 351
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 338 LVSQGCIKPLCDLLE 352
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 338 LVSQGCIKPLCDLLE 352
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 408 LVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
LV+LLS+ + +Q + A+ N+ + ++ + + G +PA+ +L + ++ +
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 467 ALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK- 524
+ +++ + ++ V + N IPPLV LL + KK+A A+ N S + I+
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 525 ---AGIIPSLLKLLE 536
G I L LLE
Sbjct: 337 LVSQGCIKPLCDLLE 351
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 442 REGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIR 500
R+ +P +I +L + + N+AA L L D+ + V L GIP LV LL +
Sbjct: 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKE 105
Query: 501 GKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHP 557
A AL N+S +Q NK +P+L++LL + + + + L L+SH
Sbjct: 106 VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD 165
Query: 558 EGRNEI 563
+ EI
Sbjct: 166 SIKMEI 171
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 445 AIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLLRYGSIRGK 502
IP ++ +L + E + AL ++S +N++ + N +G+P LV LLR
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 503 KDAATA-LFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL 540
+ T L+NLS + S IK I+ L L D+ +
Sbjct: 151 TEVITGTLWNLSSHDS-----IKMEIVDHALHALTDEVI 184
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 380 DSVMKIRMLSKENPDNRILIANNGGIRP-LVQLLSYPDSKIQEHTVTALLNL-SLDETNK 437
D+ + LS + +++I G+ P LV+LL +P + + + N+ + D+
Sbjct: 225 DACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 283
Query: 438 RHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVM-VGNLNGIPPLVNLLR 495
+ I A+P ++ +L QN ++ + + +++ +++++ V N I PLVNLL+
Sbjct: 284 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 343
Query: 496 YGSIRGKKDAATALFNLSINQSNKS--RAIKAGIIPSLLKLL 535
KK+AA A+ N + S+ + G I L LL
Sbjct: 344 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 350 TGSDASSAALIEE---ICXXXXXXXXXXXXXKRDSVMKIRMLSKENPDNRILIANNGGIR 406
TG DA + +I+ C K+++ I ++ N D + N G I
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNK--RHIAREGAIPAIIEIL 453
PLV LL + I++ A+ N + ++ +++ EG I + ++L
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQR-WLNSNHKTCPKTGQ 315
+P E LC + +IMTD V++ G +Y E I+ L S+ TCP Q
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
P EF P+ +MTDPV + +G +R I R L N T P Q L L P L
Sbjct: 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPEL 84
Query: 329 RNLIVQWC-EKNN 340
+ I W EK N
Sbjct: 85 KEQIQAWMREKQN 97
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 16/194 (8%)
Query: 394 DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLN--LSLDETNKRHIAREGAIPAIIE 451
+ RI + N GI + L+ +S + + +LN L E + + +EG + A++
Sbjct: 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGK-VVQEGGVKALLR 543
Query: 452 ILQNGTNEARENSAAALFSLSMLDENRVMVG---NLNGIPPLVNLLRYGSIRGKK-DAAT 507
+ GT + + ++ AL + + V +L+ I PL+NLL+ + ++
Sbjct: 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603
Query: 508 ALFNL-SINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASHP-----EGR 560
AL NL S+N+S + R IK G+ L+ED A + L+ S EG
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 561 NEIGRLSFIETLVE 574
N+ R+ F+ L E
Sbjct: 664 ND--RVKFLALLCE 675
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 380 DSVMKIRMLSKENPDNRILIANNGGIRP-LVQLLSYPDSKIQEHTVTALLNL-SLDETNK 437
D+ + LS + +++I G+ P LV+LL +P + + + N+ + D+
Sbjct: 263 DACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321
Query: 438 RHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVM-VGNLNGIPPLVNLLR 495
+ I A+P ++ +L QN ++ + + +++ +++++ V N I PLVNLL+
Sbjct: 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381
Query: 496 YGSIRGKKDAATALFNLSINQSNKS--RAIKAGIIPSLLKLL 535
KK+AA A+ N + S+ + G I L LL
Sbjct: 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 350 TGSDASSAALIEE---ICXXXXXXXXXXXXXKRDSVMKIRMLSKENPDNRILIANNGGIR 406
TG DA + +I+ C K+++ I ++ N D + N G I
Sbjct: 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 374
Query: 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNK--RHIAREGAIPAIIEIL 453
PLV LL + I++ A+ N + ++ +++ EG I + ++L
Sbjct: 375 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQR-WLNSNHKTCPKTGQ 315
+P E LC + +IMTD V++ G +Y E I+ L S+ TCP Q
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
P EF P+ +MTDPV + +G +R I R L N T P Q+L L P L
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPEL 69
Query: 329 RNLIVQW 335
+ I W
Sbjct: 70 KEQIQAW 76
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
VP EFL P+ IM DPVI+ A+ +R +I+ L S+ T P L + PN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEE 946
Query: 328 LRNLIVQW 335
LR I+ +
Sbjct: 947 LRQKILCF 954
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
VP EFL P+ IM DPVI+ A+ +R +I+ L S+ T P L + PN
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEE 960
Query: 328 LRNLIVQW 335
LR I+ +
Sbjct: 961 LRQKILCF 968
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 272 EFLCPVTLEIMTDPVIVATGQ-TYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
EFL P+ +M DPV++ + + T +R +I R L S+ +T P L + PN L+
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKE 80
Query: 331 LIVQW 335
I +W
Sbjct: 81 KIQRW 85
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 281 IMTDPVIV-------ATGQTYERESIQR-WLNSNHKTCPKTGQILDHLSLAPNYALRNLI 332
I+ DP I T TYER + Q W+N + + P G++ L++ P++ N I
Sbjct: 391 IILDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCI 450
Query: 333 VQWCEK 338
W +
Sbjct: 451 DWWANE 456
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 273 FLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKT-----CPKTG 314
F CP+T E M PV G TYE ++I R + S K CP+ G
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIG 55
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
VP EFL P+ I DPVI+ A+ +R +I+ L S+ T P L + PN
Sbjct: 902 VPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHLLSD-STDPFNRXPLKLEDVTPNEE 960
Query: 328 LRNLIVQW 335
LR I+ +
Sbjct: 961 LRQKILCF 968
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHK 308
V E CP+ LE++T P+ + G ++ Q L +NHK
Sbjct: 16 VKEEVTCPICLELLTQPLSLDCGHSF----CQACLTANHK 51
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKT-----CPKTGQILDHLSL 322
++ E CP+ LE++ +PV ++ R I SN T CP +L
Sbjct: 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
Query: 323 APNYALRNLI 332
PN + N++
Sbjct: 75 KPNLHVANIV 84
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCP 311
E C V LE + +PVI+ G + + I RW + P
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 424 VTALLNLSLDETNKRHIAREGAIPAIIEILQ------NGTNEA-----RENSAAALFSLS 472
V L+ LS DE ++ + G + AI E+LQ TN+ R + AL +L+
Sbjct: 55 VCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 114
Query: 473 MLD-ENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI--KAGII 528
D N+ + ++ G + LV L+ S ++ A+ L NLS S+ + G +
Sbjct: 115 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 174
Query: 529 PSLLKL-LEDKALGMVDEALSILQLLASH-PEGRNEI----GRLSFI 569
+L++ LE K + LS L L++H E + +I G L+F+
Sbjct: 175 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 221
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 424 VTALLNLSLDETNKRHIAREGAIPAIIEILQ------NGTNEA-----RENSAAALFSLS 472
V L+ LS DE ++ + G + AI E+LQ TN+ R + AL +L+
Sbjct: 53 VCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 112
Query: 473 MLD-ENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI--KAGII 528
D N+ + ++ G + LV L+ S ++ A+ L NLS S+ + G +
Sbjct: 113 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172
Query: 529 PSLLKL-LEDKALGMVDEALSILQLLASH-PEGRNEI----GRLSFI 569
+L++ LE K + LS L L++H E + +I G L+F+
Sbjct: 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,187,099
Number of Sequences: 62578
Number of extensions: 603697
Number of successful extensions: 1787
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 229
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)