Query 006494
Match_columns 643
No_of_seqs 422 out of 2742
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 3E-27 6.5E-32 284.2 32.6 281 359-639 11-313 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.7E-26 5.9E-31 276.0 31.2 281 359-640 444-766 (2102)
3 KOG4224 Armadillo repeat prote 99.9 5.9E-26 1.3E-30 225.8 19.0 276 361-637 126-404 (550)
4 KOG4224 Armadillo repeat prote 99.9 5.7E-25 1.2E-29 218.8 19.8 277 361-639 167-447 (550)
5 KOG0166 Karyopherin (importin) 99.9 1E-22 2.3E-27 216.6 24.5 278 361-638 109-393 (514)
6 KOG0166 Karyopherin (importin) 99.9 3.4E-20 7.5E-25 197.5 21.8 281 359-639 150-437 (514)
7 COG5064 SRP1 Karyopherin (impo 99.8 3E-20 6.6E-25 183.9 15.4 279 359-637 112-397 (526)
8 PF04564 U-box: U-box domain; 99.8 1.5E-21 3.2E-26 157.8 4.8 72 269-340 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.8 7E-20 1.5E-24 181.3 16.3 277 360-638 70-356 (526)
10 PF05804 KAP: Kinesin-associat 99.8 5.9E-17 1.3E-21 182.0 28.9 279 359-640 288-651 (708)
11 PF05804 KAP: Kinesin-associat 99.8 6.3E-17 1.4E-21 181.7 26.7 256 374-637 262-519 (708)
12 KOG1048 Neural adherens juncti 99.7 2.3E-15 5E-20 165.4 24.3 281 361-642 233-688 (717)
13 KOG2122 Beta-catenin-binding p 99.6 3.1E-15 6.8E-20 169.8 17.9 262 378-640 315-603 (2195)
14 KOG4199 Uncharacterized conser 99.6 4.9E-14 1.1E-18 140.1 23.6 277 361-638 145-444 (461)
15 smart00504 Ubox Modified RING 99.6 2.7E-16 5.9E-21 123.8 4.8 63 272-335 1-63 (63)
16 KOG4199 Uncharacterized conser 99.6 7.2E-13 1.6E-17 131.9 23.5 263 371-637 117-402 (461)
17 PF04826 Arm_2: Armadillo-like 99.5 7.5E-13 1.6E-17 132.9 21.3 193 359-556 10-206 (254)
18 PF04826 Arm_2: Armadillo-like 99.5 2E-12 4.3E-17 129.8 18.8 194 400-597 9-206 (254)
19 PF10508 Proteasom_PSMB: Prote 99.4 1.1E-10 2.5E-15 129.8 28.3 277 360-637 76-365 (503)
20 KOG2122 Beta-catenin-binding p 99.3 4.4E-11 9.6E-16 136.9 15.5 225 376-600 366-605 (2195)
21 KOG1048 Neural adherens juncti 99.3 1.7E-10 3.6E-15 127.6 18.1 235 404-639 234-596 (717)
22 KOG4500 Rho/Rac GTPase guanine 99.2 8.2E-10 1.8E-14 113.6 19.1 263 360-622 86-458 (604)
23 KOG1222 Kinesin associated pro 99.2 4E-09 8.7E-14 109.7 23.4 277 359-638 302-663 (791)
24 cd00020 ARM Armadillo/beta-cat 99.2 2.9E-10 6.4E-15 100.9 13.1 117 480-596 2-120 (120)
25 cd00020 ARM Armadillo/beta-cat 99.2 6.5E-10 1.4E-14 98.7 15.2 117 521-637 2-119 (120)
26 PF10508 Proteasom_PSMB: Prote 99.2 2.5E-09 5.3E-14 119.1 23.2 270 365-638 42-319 (503)
27 KOG4642 Chaperone-dependent E3 99.1 9.5E-10 2.1E-14 105.5 14.5 79 263-341 202-280 (284)
28 KOG1222 Kinesin associated pro 99.1 2.7E-09 5.9E-14 111.0 18.2 242 377-621 279-559 (791)
29 PRK09687 putative lyase; Provi 99.0 2.2E-08 4.9E-13 102.8 19.9 223 361-634 54-278 (280)
30 PF15227 zf-C3HC4_4: zinc fing 99.0 1.7E-10 3.8E-15 82.0 2.9 39 275-313 1-42 (42)
31 PLN03208 E3 ubiquitin-protein 99.0 1.7E-10 3.8E-15 108.3 3.7 62 267-328 13-89 (193)
32 PRK09687 putative lyase; Provi 99.0 1.7E-08 3.7E-13 103.6 17.8 228 360-638 22-250 (280)
33 KOG0168 Putative ubiquitin fus 99.0 6.3E-08 1.4E-12 107.1 21.2 256 361-620 167-437 (1051)
34 TIGR00599 rad18 DNA repair pro 98.9 9.5E-10 2.1E-14 115.8 5.6 69 268-337 22-90 (397)
35 cd00256 VATPase_H VATPase_H, r 98.9 1.9E-07 4.2E-12 99.9 22.8 274 363-636 103-423 (429)
36 PF03224 V-ATPase_H_N: V-ATPas 98.9 4E-08 8.6E-13 103.1 16.1 229 404-632 56-308 (312)
37 KOG4500 Rho/Rac GTPase guanine 98.9 2E-07 4.2E-12 96.4 19.6 266 374-641 55-434 (604)
38 PF03224 V-ATPase_H_N: V-ATPas 98.8 8.5E-08 1.8E-12 100.6 15.0 220 365-585 62-303 (312)
39 KOG0823 Predicted E3 ubiquitin 98.7 5.1E-09 1.1E-13 100.1 2.4 59 270-328 45-105 (230)
40 PF13923 zf-C3HC4_2: Zinc fing 98.7 1E-08 2.2E-13 72.0 2.9 38 275-313 1-39 (39)
41 COG5113 UFD2 Ubiquitin fusion 98.7 5.1E-08 1.1E-12 104.3 8.8 101 227-340 821-922 (929)
42 KOG2160 Armadillo/beta-catenin 98.7 3.7E-06 8E-11 86.3 21.2 230 372-602 94-335 (342)
43 PRK13800 putative oxidoreducta 98.7 5.8E-06 1.3E-10 98.8 26.4 85 530-634 811-895 (897)
44 PRK13800 putative oxidoreducta 98.6 2.9E-06 6.3E-11 101.3 23.6 230 359-636 619-865 (897)
45 PF11789 zf-Nse: Zinc-finger o 98.6 1.1E-08 2.3E-13 77.7 1.6 44 271-314 10-55 (57)
46 KOG0946 ER-Golgi vesicle-tethe 98.6 1.8E-05 3.9E-10 87.6 25.5 258 360-621 21-327 (970)
47 KOG2042 Ubiquitin fusion degra 98.6 1.1E-07 2.3E-12 108.5 8.3 72 267-339 865-937 (943)
48 PF13445 zf-RING_UBOX: RING-ty 98.6 2.6E-08 5.7E-13 70.8 2.1 36 275-311 1-43 (43)
49 KOG2160 Armadillo/beta-catenin 98.6 2.9E-06 6.2E-11 87.1 17.2 183 415-597 95-283 (342)
50 KOG3678 SARM protein (with ste 98.5 3E-06 6.4E-11 88.5 16.8 266 359-638 178-452 (832)
51 KOG0287 Postreplication repair 98.5 3E-08 6.5E-13 98.6 1.9 68 269-337 20-87 (442)
52 KOG4646 Uncharacterized conser 98.5 6.2E-07 1.4E-11 78.8 8.8 152 444-595 16-169 (173)
53 PF00097 zf-C3HC4: Zinc finger 98.5 1.4E-07 2.9E-12 67.1 3.2 39 275-313 1-41 (41)
54 PF01602 Adaptin_N: Adaptin N 98.4 9.2E-06 2E-10 91.6 18.9 254 360-638 78-333 (526)
55 PHA02929 N1R/p28-like protein; 98.4 2.8E-07 6.1E-12 90.8 5.2 48 270-318 172-227 (238)
56 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.6E-07 5.6E-12 68.8 3.3 47 271-318 1-48 (50)
57 KOG4646 Uncharacterized conser 98.4 2.5E-06 5.4E-11 75.1 9.8 157 481-637 12-169 (173)
58 KOG0317 Predicted E3 ubiquitin 98.4 2.1E-07 4.6E-12 91.7 3.4 54 269-323 236-289 (293)
59 KOG2759 Vacuolar H+-ATPase V1 98.4 3.9E-05 8.5E-10 79.9 19.7 272 363-637 116-437 (442)
60 KOG2973 Uncharacterized conser 98.3 0.00016 3.4E-09 72.6 22.1 271 362-638 4-315 (353)
61 cd00256 VATPase_H VATPase_H, r 98.3 5.5E-05 1.2E-09 81.3 20.1 218 360-578 52-287 (429)
62 PF14835 zf-RING_6: zf-RING of 98.3 2.5E-07 5.5E-12 70.3 1.2 58 272-332 7-65 (65)
63 COG5432 RAD18 RING-finger-cont 98.2 5.2E-07 1.1E-11 88.1 2.8 66 270-336 23-88 (391)
64 PF01602 Adaptin_N: Adaptin N 98.2 4.8E-05 1E-09 85.8 18.8 255 362-639 43-297 (526)
65 PF05536 Neurochondrin: Neuroc 98.2 2.3E-05 5E-10 87.7 15.8 152 445-599 6-171 (543)
66 PF13639 zf-RING_2: Ring finge 98.2 7.4E-07 1.6E-11 64.4 2.1 40 274-314 2-44 (44)
67 cd00162 RING RING-finger (Real 98.2 1.6E-06 3.5E-11 62.4 3.6 43 274-316 1-44 (45)
68 KOG0320 Predicted E3 ubiquitin 98.2 8.8E-07 1.9E-11 81.2 2.4 54 271-325 130-185 (187)
69 KOG2177 Predicted E3 ubiquitin 98.1 1.8E-06 3.8E-11 90.5 3.8 68 269-339 10-77 (386)
70 KOG1293 Proteins containing ar 98.1 0.00051 1.1E-08 75.3 21.8 148 457-604 390-541 (678)
71 smart00184 RING Ring finger. E 98.1 3.4E-06 7.3E-11 58.5 3.3 39 275-313 1-39 (39)
72 PF05536 Neurochondrin: Neuroc 98.0 0.00026 5.7E-09 79.4 19.4 231 361-594 5-259 (543)
73 KOG2734 Uncharacterized conser 98.0 0.0011 2.4E-08 69.6 21.8 237 381-619 104-371 (536)
74 KOG0168 Putative ubiquitin fus 98.0 0.00011 2.4E-09 82.2 15.1 150 484-637 210-363 (1051)
75 KOG1293 Proteins containing ar 98.0 0.00011 2.4E-09 80.3 14.7 204 436-639 317-534 (678)
76 PTZ00429 beta-adaptin; Provisi 98.0 0.0034 7.5E-08 72.6 27.1 256 362-637 69-325 (746)
77 PHA02926 zinc finger-like prot 97.9 5.9E-06 1.3E-10 78.7 3.4 57 268-326 166-236 (242)
78 KOG2171 Karyopherin (importin) 97.9 0.0017 3.6E-08 75.7 23.1 269 361-637 202-503 (1075)
79 KOG0311 Predicted E3 ubiquitin 97.9 2.9E-06 6.3E-11 85.7 0.7 70 268-337 39-110 (381)
80 PTZ00429 beta-adaptin; Provisi 97.9 0.0037 8.1E-08 72.3 25.5 253 360-636 31-283 (746)
81 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0014 3E-08 73.2 20.7 248 360-607 60-357 (970)
82 TIGR00570 cdk7 CDK-activating 97.8 2.1E-05 4.6E-10 79.8 5.5 54 271-324 2-60 (309)
83 KOG2734 Uncharacterized conser 97.8 0.0071 1.5E-07 63.7 23.8 238 359-597 123-401 (536)
84 TIGR02270 conserved hypothetic 97.8 0.0024 5.1E-08 69.1 21.2 56 568-638 241-296 (410)
85 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0051 1.1E-07 65.7 23.5 271 363-637 27-363 (371)
86 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0047 1E-07 66.0 21.5 252 384-638 6-269 (371)
87 COG5574 PEX10 RING-finger-cont 97.7 1.7E-05 3.8E-10 77.4 2.7 52 270-321 213-265 (271)
88 KOG0978 E3 ubiquitin ligase in 97.7 0.00098 2.1E-08 74.8 16.6 55 271-325 642-696 (698)
89 KOG2171 Karyopherin (importin) 97.7 0.007 1.5E-07 70.7 23.3 260 361-639 4-279 (1075)
90 PF12678 zf-rbx1: RING-H2 zinc 97.7 4.3E-05 9.3E-10 61.6 3.8 39 275-314 22-73 (73)
91 KOG0289 mRNA splicing factor [ 97.7 7.1E-05 1.5E-09 77.7 6.2 52 273-325 1-53 (506)
92 KOG2164 Predicted E3 ubiquitin 97.7 3.9E-05 8.5E-10 81.7 4.4 72 271-342 185-264 (513)
93 PF14634 zf-RING_5: zinc-RING 97.7 3.5E-05 7.6E-10 55.5 2.8 41 274-315 1-44 (44)
94 KOG2759 Vacuolar H+-ATPase V1 97.6 0.0022 4.8E-08 67.2 16.7 222 373-596 169-438 (442)
95 KOG2973 Uncharacterized conser 97.6 0.0044 9.5E-08 62.5 18.1 232 359-596 42-315 (353)
96 PF00514 Arm: Armadillo/beta-c 97.6 9.4E-05 2E-09 52.4 4.2 40 392-431 1-40 (41)
97 KOG1789 Endocytosis protein RM 97.6 0.0092 2E-07 68.5 21.6 256 362-620 1772-2141(2235)
98 PF00514 Arm: Armadillo/beta-c 97.5 9E-05 1.9E-09 52.5 3.6 40 516-555 2-41 (41)
99 KOG3678 SARM protein (with ste 97.5 0.00095 2.1E-08 70.2 12.3 182 395-578 172-359 (832)
100 COG5369 Uncharacterized conser 97.5 0.0017 3.8E-08 69.6 13.8 258 380-637 408-740 (743)
101 PF10165 Ric8: Guanine nucleot 97.5 0.0097 2.1E-07 65.5 20.5 256 382-638 2-337 (446)
102 KOG0297 TNF receptor-associate 97.5 6.9E-05 1.5E-09 80.6 3.6 67 268-335 17-85 (391)
103 PF12348 CLASP_N: CLASP N term 97.5 0.0007 1.5E-08 67.5 10.6 181 454-639 17-207 (228)
104 KOG4413 26S proteasome regulat 97.4 0.0087 1.9E-07 60.7 17.4 278 359-637 126-438 (524)
105 KOG4159 Predicted E3 ubiquitin 97.4 8.7E-05 1.9E-09 78.7 3.3 73 265-338 77-154 (398)
106 KOG4413 26S proteasome regulat 97.4 0.025 5.4E-07 57.5 20.1 263 374-637 95-376 (524)
107 KOG0212 Uncharacterized conser 97.4 0.0054 1.2E-07 66.3 16.2 239 403-642 167-410 (675)
108 COG5222 Uncharacterized conser 97.4 0.00019 4.2E-09 70.7 4.7 66 273-338 275-342 (427)
109 KOG0212 Uncharacterized conser 97.4 0.0037 8E-08 67.6 14.4 234 361-601 208-450 (675)
110 PF12348 CLASP_N: CLASP N term 97.4 0.00097 2.1E-08 66.5 9.8 181 371-556 17-207 (228)
111 COG1413 FOG: HEAT repeat [Ener 97.4 0.026 5.7E-07 59.7 21.3 187 361-596 43-242 (335)
112 PF10165 Ric8: Guanine nucleot 97.3 0.017 3.6E-07 63.6 19.7 235 372-606 43-347 (446)
113 TIGR02270 conserved hypothetic 97.2 0.022 4.7E-07 61.7 18.8 151 404-595 55-206 (410)
114 KOG1517 Guanine nucleotide bin 97.2 0.019 4.1E-07 66.3 18.4 243 360-604 471-740 (1387)
115 KOG2023 Nuclear transport rece 97.2 0.0088 1.9E-07 65.9 15.1 268 360-638 127-463 (885)
116 KOG2660 Locus-specific chromos 97.1 0.00027 5.8E-09 71.5 3.0 65 269-334 12-81 (331)
117 PF13646 HEAT_2: HEAT repeats; 97.1 0.0019 4.2E-08 53.7 7.8 86 405-510 1-88 (88)
118 KOG1059 Vesicle coat complex A 97.1 0.037 8E-07 61.7 19.3 253 360-636 180-441 (877)
119 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.02 4.3E-07 58.0 14.8 227 411-637 157-427 (432)
120 COG5369 Uncharacterized conser 97.0 0.0046 1E-07 66.4 10.9 197 423-619 409-618 (743)
121 COG1413 FOG: HEAT repeat [Ener 97.0 0.023 5E-07 60.1 16.7 190 403-634 43-238 (335)
122 PF13646 HEAT_2: HEAT repeats; 97.0 0.0029 6.2E-08 52.6 7.7 86 446-551 1-88 (88)
123 PF12861 zf-Apc11: Anaphase-pr 96.9 0.00094 2E-08 54.5 3.6 45 274-318 34-82 (85)
124 KOG1789 Endocytosis protein RM 96.8 0.45 9.8E-06 55.4 24.7 135 501-637 1741-1882(2235)
125 KOG4628 Predicted E3 ubiquitin 96.8 0.00066 1.4E-08 70.3 2.6 47 273-319 230-279 (348)
126 PF05659 RPW8: Arabidopsis bro 96.8 0.017 3.7E-07 53.2 11.6 91 48-139 30-121 (147)
127 COG5240 SEC21 Vesicle coat com 96.8 0.16 3.4E-06 55.5 19.8 259 363-638 266-555 (898)
128 KOG1242 Protein containing ada 96.8 0.044 9.6E-07 60.4 16.0 230 361-597 216-484 (569)
129 PF11841 DUF3361: Domain of un 96.7 0.027 5.9E-07 52.1 12.3 120 480-599 6-134 (160)
130 smart00185 ARM Armadillo/beta- 96.7 0.0035 7.5E-08 43.9 5.1 39 393-431 2-40 (41)
131 KOG2259 Uncharacterized conser 96.7 0.014 3.1E-07 64.3 11.8 255 360-637 197-474 (823)
132 KOG1242 Protein containing ada 96.6 0.13 2.7E-06 56.9 18.3 265 360-634 133-440 (569)
133 KOG0802 E3 ubiquitin ligase [P 96.6 0.00086 1.9E-08 75.6 1.8 47 270-317 289-340 (543)
134 KOG0824 Predicted E3 ubiquitin 96.5 0.0011 2.4E-08 66.1 1.9 47 274-320 9-55 (324)
135 smart00185 ARM Armadillo/beta- 96.5 0.0051 1.1E-07 43.0 4.7 40 516-555 2-41 (41)
136 PF11841 DUF3361: Domain of un 96.4 0.063 1.4E-06 49.8 12.5 118 519-637 4-130 (160)
137 KOG1813 Predicted E3 ubiquitin 96.4 0.0014 3E-08 65.3 1.5 47 271-318 240-286 (313)
138 COG5540 RING-finger-containing 96.4 0.0019 4.2E-08 64.2 2.3 47 273-319 324-373 (374)
139 PF04063 DUF383: Domain of unk 96.3 0.028 6E-07 54.3 10.0 120 500-619 10-157 (192)
140 KOG2023 Nuclear transport rece 96.3 0.024 5.2E-07 62.6 10.2 172 402-574 127-306 (885)
141 KOG1002 Nucleotide excision re 96.3 0.002 4.4E-08 68.4 2.0 55 270-324 534-592 (791)
142 COG5243 HRD1 HRD ubiquitin lig 96.2 0.0034 7.5E-08 64.1 3.4 47 271-318 286-345 (491)
143 KOG1517 Guanine nucleotide bin 96.2 0.13 2.8E-06 59.8 16.0 218 420-637 484-731 (1387)
144 KOG1062 Vesicle coat complex A 96.1 0.39 8.5E-06 54.5 18.9 269 361-637 179-543 (866)
145 KOG3036 Protein involved in ce 96.1 0.37 8E-06 47.5 16.2 180 417-597 93-292 (293)
146 KOG1248 Uncharacterized conser 96.0 0.24 5.2E-06 58.5 17.1 220 414-639 665-899 (1176)
147 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.006 1.3E-07 62.1 3.4 54 269-324 110-167 (260)
148 KOG1078 Vesicle coat complex C 95.9 0.53 1.2E-05 53.4 18.4 256 362-638 246-532 (865)
149 PF09759 Atx10homo_assoc: Spin 95.8 0.049 1.1E-06 46.6 8.0 66 542-607 2-70 (102)
150 KOG2879 Predicted E3 ubiquitin 95.8 0.0075 1.6E-07 59.5 3.4 49 270-318 237-287 (298)
151 KOG4151 Myosin assembly protei 95.7 0.097 2.1E-06 59.4 12.2 197 433-634 493-695 (748)
152 COG5181 HSH155 U2 snRNP splice 95.7 0.54 1.2E-05 51.9 17.2 233 360-597 603-871 (975)
153 KOG1061 Vesicle coat complex A 95.7 0.092 2E-06 59.3 11.7 73 359-434 119-191 (734)
154 KOG0826 Predicted E3 ubiquitin 95.7 0.008 1.7E-07 60.8 3.1 52 266-318 294-346 (357)
155 COG5152 Uncharacterized conser 95.7 0.0045 9.7E-08 57.8 1.2 45 272-317 196-240 (259)
156 KOG0213 Splicing factor 3b, su 95.6 0.29 6.3E-06 55.0 15.0 257 361-637 799-1064(1172)
157 COG5096 Vesicle coat complex, 95.5 0.5 1.1E-05 54.4 16.9 100 448-555 96-195 (757)
158 KOG3036 Protein involved in ce 95.5 0.4 8.6E-06 47.3 13.8 138 501-638 95-247 (293)
159 KOG1824 TATA-binding protein-i 95.5 0.2 4.2E-06 57.8 13.4 264 365-638 9-286 (1233)
160 KOG1241 Karyopherin (importin) 95.5 0.52 1.1E-05 53.3 16.3 270 362-639 130-436 (859)
161 KOG1077 Vesicle coat complex A 95.4 0.63 1.4E-05 52.2 16.6 263 359-639 109-399 (938)
162 KOG1059 Vesicle coat complex A 95.4 1.1 2.4E-05 50.5 18.3 218 359-597 142-366 (877)
163 PF04063 DUF383: Domain of unk 95.3 0.065 1.4E-06 51.7 8.0 121 416-536 8-157 (192)
164 KOG3039 Uncharacterized conser 95.3 0.012 2.6E-07 57.0 2.8 53 271-324 220-276 (303)
165 PF04078 Rcd1: Cell differenti 95.3 0.38 8.3E-06 48.2 13.2 192 374-565 8-228 (262)
166 PF11698 V-ATPase_H_C: V-ATPas 95.1 0.07 1.5E-06 47.0 6.6 71 360-430 42-113 (119)
167 PF13513 HEAT_EZ: HEAT-like re 95.1 0.044 9.4E-07 41.2 4.8 55 417-471 1-55 (55)
168 PF13513 HEAT_EZ: HEAT-like re 95.0 0.03 6.5E-07 42.1 3.8 55 499-553 1-55 (55)
169 KOG2979 Protein involved in DN 95.0 0.02 4.3E-07 56.3 3.3 46 271-316 175-222 (262)
170 KOG3039 Uncharacterized conser 95.0 0.014 2.9E-07 56.6 2.0 38 268-305 39-76 (303)
171 KOG0213 Splicing factor 3b, su 94.8 0.64 1.4E-05 52.4 14.6 150 487-638 801-954 (1172)
172 COG5096 Vesicle coat complex, 94.8 0.71 1.5E-05 53.2 15.5 140 362-514 56-195 (757)
173 PF05004 IFRD: Interferon-rela 94.8 0.91 2E-05 47.5 15.2 211 409-621 49-285 (309)
174 PF13764 E3_UbLigase_R4: E3 ub 94.8 3.6 7.7E-05 48.3 21.2 238 399-639 113-407 (802)
175 KOG2259 Uncharacterized conser 94.6 0.49 1.1E-05 52.7 12.9 219 360-595 233-474 (823)
176 PF09759 Atx10homo_assoc: Spin 94.6 0.17 3.8E-06 43.3 7.7 64 379-442 4-70 (102)
177 KOG0804 Cytoplasmic Zn-finger 94.5 0.015 3.3E-07 61.1 1.4 44 272-318 175-222 (493)
178 KOG2817 Predicted E3 ubiquitin 94.5 0.025 5.3E-07 59.1 2.8 43 272-314 334-381 (394)
179 KOG1062 Vesicle coat complex A 94.5 1.4 2.9E-05 50.4 16.3 105 532-638 258-379 (866)
180 KOG4367 Predicted Zn-finger pr 94.3 0.016 3.5E-07 60.3 0.9 35 270-304 2-36 (699)
181 KOG1061 Vesicle coat complex A 94.2 0.78 1.7E-05 52.1 13.7 143 362-517 50-192 (734)
182 KOG1248 Uncharacterized conser 94.2 1.1 2.4E-05 53.2 15.4 228 372-607 665-910 (1176)
183 COG5215 KAP95 Karyopherin (imp 94.1 3.1 6.6E-05 45.9 17.4 264 368-638 101-437 (858)
184 KOG1241 Karyopherin (importin) 94.1 2.3 5E-05 48.4 16.9 198 359-563 317-539 (859)
185 KOG1824 TATA-binding protein-i 94.1 1.3 2.8E-05 51.5 15.1 231 359-601 45-291 (1233)
186 PF04078 Rcd1: Cell differenti 93.9 1.6 3.5E-05 43.8 13.8 136 498-636 8-166 (262)
187 COG5231 VMA13 Vacuolar H+-ATPa 93.8 2.2 4.8E-05 43.7 14.8 220 374-595 162-427 (432)
188 KOG0828 Predicted E3 ubiquitin 93.8 0.032 6.9E-07 59.3 1.9 51 269-319 568-635 (636)
189 KOG2999 Regulator of Rac1, req 93.7 0.92 2E-05 49.6 12.6 154 445-598 84-244 (713)
190 KOG1060 Vesicle coat complex A 93.7 2.7 5.9E-05 48.0 16.5 209 364-597 38-247 (968)
191 COG5181 HSH155 U2 snRNP splice 93.7 1.4 3.1E-05 48.7 14.0 147 404-555 605-759 (975)
192 PF08569 Mo25: Mo25-like; Int 93.6 1.1 2.3E-05 47.3 13.0 197 361-559 76-287 (335)
193 PF02891 zf-MIZ: MIZ/SP-RING z 93.6 0.067 1.5E-06 39.5 2.8 45 272-316 2-50 (50)
194 KOG1077 Vesicle coat complex A 93.4 3.1 6.7E-05 47.0 16.3 160 415-586 253-423 (938)
195 KOG1788 Uncharacterized conser 93.3 2.3 5E-05 49.8 15.4 255 383-643 664-987 (2799)
196 PF12031 DUF3518: Domain of un 93.3 0.35 7.6E-06 47.6 7.9 86 542-627 140-234 (257)
197 PF06371 Drf_GBD: Diaphanous G 93.2 0.56 1.2E-05 44.9 9.5 109 485-595 66-186 (187)
198 KOG2611 Neurochondrin/leucine- 93.1 1.5 3.2E-05 47.3 12.8 145 449-595 16-181 (698)
199 PF13764 E3_UbLigase_R4: E3 ub 93.0 19 0.0004 42.6 22.7 227 360-597 116-407 (802)
200 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.57 1.2E-05 39.9 7.8 70 567-637 27-96 (97)
201 KOG1645 RING-finger-containing 92.9 0.054 1.2E-06 56.5 1.8 61 272-332 4-70 (463)
202 KOG2999 Regulator of Rac1, req 92.8 1.6 3.5E-05 47.8 12.7 154 485-638 83-242 (713)
203 smart00744 RINGv The RING-vari 92.8 0.12 2.7E-06 37.9 3.2 40 275-314 2-49 (49)
204 PF12755 Vac14_Fab1_bd: Vacuol 92.4 0.92 2E-05 38.7 8.5 68 403-471 27-94 (97)
205 PF05004 IFRD: Interferon-rela 92.3 6.7 0.00015 41.0 16.6 191 446-638 45-257 (309)
206 KOG0567 HEAT repeat-containing 92.3 6.5 0.00014 39.5 15.2 196 360-596 66-280 (289)
207 PF11701 UNC45-central: Myosin 92.2 0.36 7.8E-06 45.1 6.3 146 444-593 3-156 (157)
208 KOG1734 Predicted RING-contain 92.2 0.039 8.5E-07 54.3 -0.2 55 271-325 223-288 (328)
209 PF11793 FANCL_C: FANCL C-term 92.0 0.051 1.1E-06 43.3 0.3 47 272-318 2-66 (70)
210 COG5194 APC11 Component of SCF 91.9 0.15 3.2E-06 40.7 2.8 44 274-318 33-81 (88)
211 COG5219 Uncharacterized conser 91.9 0.069 1.5E-06 61.0 1.3 47 272-318 1469-1523(1525)
212 PF07814 WAPL: Wings apart-lik 91.9 4.9 0.00011 43.0 15.4 239 360-610 20-313 (361)
213 PF12717 Cnd1: non-SMC mitotic 91.6 6.3 0.00014 37.5 14.4 93 374-474 1-93 (178)
214 PF12717 Cnd1: non-SMC mitotic 91.6 5.7 0.00012 37.8 14.0 93 457-556 1-93 (178)
215 KOG3113 Uncharacterized conser 91.5 0.14 3E-06 50.1 2.6 52 270-324 109-164 (293)
216 PF14668 RICTOR_V: Rapamycin-i 91.3 0.95 2.1E-05 36.3 6.8 66 502-567 4-70 (73)
217 KOG2611 Neurochondrin/leucine- 91.1 25 0.00055 38.3 19.0 183 408-594 16-223 (698)
218 KOG4172 Predicted E3 ubiquitin 91.1 0.064 1.4E-06 39.4 0.0 46 273-318 8-54 (62)
219 KOG1039 Predicted E3 ubiquitin 90.9 0.19 4.2E-06 52.6 3.3 49 270-318 159-221 (344)
220 KOG4692 Predicted E3 ubiquitin 90.9 0.13 2.9E-06 52.4 2.0 47 271-318 421-467 (489)
221 KOG1943 Beta-tubulin folding c 90.8 17 0.00036 43.4 18.7 221 359-587 339-602 (1133)
222 PF12719 Cnd3: Nuclear condens 90.7 6.2 0.00013 41.0 14.5 163 451-621 34-209 (298)
223 KOG1493 Anaphase-promoting com 90.4 0.13 2.8E-06 40.7 1.2 31 288-318 49-81 (84)
224 PF08569 Mo25: Mo25-like; Int 90.4 3.9 8.5E-05 43.2 12.5 197 399-597 72-284 (335)
225 KOG1785 Tyrosine kinase negati 90.3 0.13 2.9E-06 53.3 1.4 47 274-320 371-418 (563)
226 KOG0211 Protein phosphatase 2A 90.3 6.4 0.00014 45.9 15.1 188 360-555 235-427 (759)
227 COG5215 KAP95 Karyopherin (imp 89.9 21 0.00045 39.8 17.4 149 359-514 319-479 (858)
228 PF06371 Drf_GBD: Diaphanous G 89.8 2.5 5.4E-05 40.4 9.9 110 361-472 66-186 (187)
229 KOG0301 Phospholipase A2-activ 89.8 6.9 0.00015 44.1 14.0 160 371-537 554-727 (745)
230 PF08045 CDC14: Cell division 89.6 3.7 8E-05 41.4 11.0 94 377-470 107-204 (257)
231 PF12719 Cnd3: Nuclear condens 89.5 7.5 0.00016 40.4 13.9 181 410-597 34-234 (298)
232 PF11698 V-ATPase_H_C: V-ATPas 89.4 0.78 1.7E-05 40.5 5.4 70 527-596 44-115 (119)
233 PF08045 CDC14: Cell division 89.1 4.5 9.7E-05 40.8 11.2 96 542-637 107-206 (257)
234 KOG1240 Protein kinase contain 88.8 8.9 0.00019 46.1 14.6 255 374-638 436-725 (1431)
235 PF14570 zf-RING_4: RING/Ubox 88.8 0.36 7.9E-06 35.1 2.3 43 275-317 1-47 (48)
236 KOG0825 PHD Zn-finger protein 88.8 0.11 2.3E-06 58.3 -0.6 48 271-319 122-172 (1134)
237 KOG1001 Helicase-like transcri 88.5 0.11 2.5E-06 59.5 -0.6 50 273-323 455-505 (674)
238 KOG2274 Predicted importin 9 [ 88.4 7.8 0.00017 45.1 13.6 176 457-637 504-688 (1005)
239 PF05918 API5: Apoptosis inhib 88.4 3 6.5E-05 46.7 10.3 121 455-592 33-158 (556)
240 KOG4151 Myosin assembly protei 88.2 8.7 0.00019 44.2 13.8 236 395-635 496-738 (748)
241 PF06025 DUF913: Domain of Unk 88.0 16 0.00034 39.4 15.3 224 380-621 3-256 (379)
242 KOG0915 Uncharacterized conser 88.0 4.9 0.00011 49.2 12.2 270 362-637 819-1109(1702)
243 KOG3800 Predicted E3 ubiquitin 88.0 0.36 7.8E-06 48.5 2.6 50 274-323 2-56 (300)
244 COG5109 Uncharacterized conser 87.8 0.33 7.2E-06 49.0 2.2 44 271-314 335-383 (396)
245 KOG0883 Cyclophilin type, U bo 86.6 0.45 9.8E-06 49.4 2.4 57 272-329 40-96 (518)
246 KOG2930 SCF ubiquitin ligase, 86.5 0.45 9.7E-06 40.0 1.9 27 289-316 80-106 (114)
247 KOG4653 Uncharacterized conser 86.5 19 0.00042 41.9 15.2 212 415-636 739-962 (982)
248 KOG1240 Protein kinase contain 86.5 9.8 0.00021 45.7 13.2 227 361-597 462-726 (1431)
249 KOG0567 HEAT repeat-containing 86.4 40 0.00086 34.1 17.7 193 403-636 67-278 (289)
250 COG5209 RCD1 Uncharacterized p 86.3 3.5 7.6E-05 40.2 8.1 99 502-600 117-222 (315)
251 PF12031 DUF3518: Domain of un 85.8 2.5 5.4E-05 41.8 7.0 82 499-580 138-229 (257)
252 COG5175 MOT2 Transcriptional r 85.8 0.52 1.1E-05 48.0 2.3 51 272-322 14-68 (480)
253 KOG1943 Beta-tubulin folding c 85.3 9 0.00019 45.5 12.1 155 485-643 341-506 (1133)
254 COG5209 RCD1 Uncharacterized p 85.0 2.2 4.7E-05 41.6 6.0 95 542-636 116-216 (315)
255 KOG0298 DEAD box-containing he 84.9 0.78 1.7E-05 54.9 3.6 43 271-314 1152-1195(1394)
256 PF08324 PUL: PUL domain; Int 84.8 7.8 0.00017 39.5 10.6 136 497-632 122-268 (268)
257 PRK14707 hypothetical protein; 84.8 76 0.0016 41.1 19.8 275 360-637 204-487 (2710)
258 PF11707 Npa1: Ribosome 60S bi 84.7 55 0.0012 34.5 17.2 160 361-520 56-243 (330)
259 PF02985 HEAT: HEAT repeat; I 84.4 1.6 3.4E-05 28.5 3.5 29 569-597 2-30 (31)
260 PF05918 API5: Apoptosis inhib 84.2 39 0.00084 38.1 16.2 133 360-510 22-158 (556)
261 KOG4535 HEAT and armadillo rep 83.7 1.4 3E-05 47.5 4.5 176 420-597 408-604 (728)
262 PRK14707 hypothetical protein; 83.6 64 0.0014 41.7 18.6 251 380-633 183-440 (2710)
263 KOG1058 Vesicle coat complex C 83.5 65 0.0014 37.3 17.3 104 444-556 243-347 (948)
264 KOG4265 Predicted E3 ubiquitin 83.5 0.69 1.5E-05 48.0 2.1 46 272-318 290-336 (349)
265 KOG0414 Chromosome condensatio 83.4 6.9 0.00015 46.9 10.2 139 404-556 920-1065(1251)
266 PF14447 Prok-RING_4: Prokaryo 83.2 0.66 1.4E-05 34.6 1.3 47 272-321 7-53 (55)
267 COG5627 MMS21 DNA repair prote 83.1 0.75 1.6E-05 44.6 2.1 54 272-325 189-246 (275)
268 PF08324 PUL: PUL domain; Int 82.9 13 0.00029 37.7 11.4 155 376-531 78-249 (268)
269 PF12460 MMS19_C: RNAPII trans 82.8 18 0.00039 39.5 13.1 186 362-557 190-396 (415)
270 PF02985 HEAT: HEAT repeat; I 82.4 2.6 5.7E-05 27.4 3.9 28 363-390 2-29 (31)
271 PF14668 RICTOR_V: Rapamycin-i 82.3 9.1 0.0002 30.7 7.6 57 543-599 4-61 (73)
272 KOG0827 Predicted E3 ubiquitin 82.2 0.91 2E-05 47.3 2.4 49 271-319 3-57 (465)
273 KOG1820 Microtubule-associated 81.5 24 0.00053 41.6 13.9 184 448-637 257-442 (815)
274 KOG1566 Conserved protein Mo25 80.9 66 0.0014 33.3 14.9 214 360-577 78-310 (342)
275 PF11701 UNC45-central: Myosin 80.6 8.6 0.00019 35.9 8.2 142 365-511 7-156 (157)
276 KOG3665 ZYG-1-like serine/thre 80.0 24 0.00051 41.3 13.2 90 508-597 494-588 (699)
277 KOG4185 Predicted E3 ubiquitin 79.7 1.5 3.2E-05 45.6 3.1 62 274-335 5-77 (296)
278 KOG4535 HEAT and armadillo rep 79.0 4.3 9.4E-05 43.9 6.1 179 377-556 407-604 (728)
279 cd03569 VHS_Hrs_Vps27p VHS dom 78.4 11 0.00024 34.5 8.1 73 359-431 39-113 (142)
280 KOG0211 Protein phosphatase 2A 78.4 65 0.0014 37.9 15.9 291 324-638 328-625 (759)
281 KOG4653 Uncharacterized conser 77.9 18 0.00039 42.1 10.9 174 456-638 739-918 (982)
282 PF12460 MMS19_C: RNAPII trans 77.7 40 0.00088 36.8 13.7 184 445-638 190-394 (415)
283 KOG2933 Uncharacterized conser 77.6 13 0.00027 38.4 8.7 143 359-512 86-232 (334)
284 KOG2274 Predicted importin 9 [ 77.6 1E+02 0.0022 36.4 16.7 220 373-601 462-694 (1005)
285 KOG1060 Vesicle coat complex A 77.5 1.1E+02 0.0024 35.6 16.7 207 407-638 39-246 (968)
286 COG5240 SEC21 Vesicle coat com 77.4 1.3E+02 0.0028 33.8 23.4 87 382-475 248-334 (898)
287 KOG0396 Uncharacterized conser 77.4 1.8 4E-05 45.0 2.8 48 273-320 331-381 (389)
288 KOG1058 Vesicle coat complex C 77.4 1.5E+02 0.0032 34.5 17.9 130 373-516 218-348 (948)
289 KOG1991 Nuclear transport rece 77.3 1.7E+02 0.0037 35.1 18.5 133 402-537 409-558 (1010)
290 KOG1991 Nuclear transport rece 77.0 1.7E+02 0.0037 35.0 18.5 131 361-494 410-556 (1010)
291 KOG2062 26S proteasome regulat 77.0 38 0.00082 39.0 12.8 123 443-581 553-679 (929)
292 KOG2025 Chromosome condensatio 76.9 74 0.0016 36.6 15.0 116 402-524 84-200 (892)
293 KOG3161 Predicted E3 ubiquitin 76.8 1.4 3E-05 48.8 1.8 38 271-311 10-51 (861)
294 cd03561 VHS VHS domain family; 76.5 16 0.00034 33.0 8.4 73 359-431 35-111 (133)
295 KOG1820 Microtubule-associated 76.2 41 0.00089 39.8 13.6 182 364-555 256-443 (815)
296 PF06025 DUF913: Domain of Unk 76.0 40 0.00087 36.3 12.7 83 374-456 122-208 (379)
297 KOG1571 Predicted E3 ubiquitin 75.9 1.5 3.2E-05 45.6 1.7 48 267-318 300-347 (355)
298 PF05290 Baculo_IE-1: Baculovi 75.7 2.8 6E-05 37.3 3.0 51 271-321 79-135 (140)
299 KOG3665 ZYG-1-like serine/thre 75.6 44 0.00096 39.1 13.7 192 384-593 494-694 (699)
300 smart00638 LPD_N Lipoprotein N 73.4 1E+02 0.0022 35.2 16.1 201 405-632 313-539 (574)
301 PF10363 DUF2435: Protein of u 72.4 10 0.00022 31.9 5.6 71 360-432 2-72 (92)
302 PF14500 MMS19_N: Dos2-interac 72.2 1E+02 0.0022 31.3 14.0 209 368-597 6-238 (262)
303 cd03568 VHS_STAM VHS domain fa 72.0 21 0.00045 32.8 8.0 73 359-431 35-109 (144)
304 PF07814 WAPL: Wings apart-lik 71.6 1.5E+02 0.0032 31.8 15.8 91 405-495 23-116 (361)
305 KOG2956 CLIP-associating prote 71.5 63 0.0014 35.3 12.4 144 487-637 331-476 (516)
306 KOG2114 Vacuolar assembly/sort 71.4 12 0.00026 43.3 7.5 41 271-315 839-880 (933)
307 PF12530 DUF3730: Protein of u 71.4 1.1E+02 0.0025 30.4 16.3 136 364-513 3-150 (234)
308 KOG2025 Chromosome condensatio 71.4 90 0.0019 35.9 14.0 116 359-482 83-199 (892)
309 PF11865 DUF3385: Domain of un 70.9 39 0.00084 31.6 9.8 143 485-635 10-154 (160)
310 KOG1967 DNA repair/transcripti 70.2 72 0.0016 37.7 13.3 146 485-631 867-1017(1030)
311 KOG0915 Uncharacterized conser 70.1 1.5E+02 0.0032 37.3 16.2 172 362-537 995-1183(1702)
312 KOG1243 Protein kinase [Genera 69.9 72 0.0016 36.6 13.0 334 276-635 165-512 (690)
313 KOG4275 Predicted E3 ubiquitin 69.8 1.1 2.4E-05 45.0 -0.9 40 272-318 300-342 (350)
314 cd03572 ENTH_epsin_related ENT 69.6 14 0.00031 32.8 6.1 72 568-639 39-120 (122)
315 smart00288 VHS Domain present 69.5 26 0.00057 31.6 8.1 73 359-431 35-110 (133)
316 PF14666 RICTOR_M: Rapamycin-i 69.3 1.2E+02 0.0027 30.0 13.9 129 499-637 78-224 (226)
317 PF04641 Rtf2: Rtf2 RING-finge 69.2 5.2 0.00011 40.7 3.8 36 271-306 33-69 (260)
318 cd03567 VHS_GGA VHS domain fam 69.2 27 0.00059 31.8 8.1 73 359-431 36-115 (139)
319 PF05605 zf-Di19: Drought indu 69.0 5.6 0.00012 29.7 3.0 38 271-315 1-39 (54)
320 cd03561 VHS VHS domain family; 68.5 25 0.00055 31.7 7.8 72 567-638 37-112 (133)
321 PF14726 RTTN_N: Rotatin, an a 67.6 42 0.00092 28.6 8.4 93 376-468 2-95 (98)
322 PF12530 DUF3730: Protein of u 66.7 1.4E+02 0.0031 29.7 16.8 136 406-555 3-151 (234)
323 KOG1940 Zn-finger protein [Gen 66.5 3.9 8.4E-05 41.6 2.2 44 271-315 157-204 (276)
324 PF10272 Tmpp129: Putative tra 64.9 4 8.6E-05 43.2 2.0 38 285-322 301-355 (358)
325 KOG1078 Vesicle coat complex C 63.1 3E+02 0.0066 32.2 20.3 103 405-511 247-361 (865)
326 COG5098 Chromosome condensatio 62.9 39 0.00084 38.6 9.1 107 528-636 301-413 (1128)
327 cd03569 VHS_Hrs_Vps27p VHS dom 62.6 34 0.00073 31.3 7.5 72 567-638 41-114 (142)
328 cd03568 VHS_STAM VHS domain fa 62.0 34 0.00074 31.4 7.4 72 567-638 37-110 (144)
329 PF10367 Vps39_2: Vacuolar sor 62.0 3.1 6.7E-05 35.8 0.5 34 267-300 73-108 (109)
330 KOG1967 DNA repair/transcripti 61.2 28 0.00061 40.9 7.9 146 361-508 867-1018(1030)
331 PF01347 Vitellogenin_N: Lipop 60.3 90 0.0019 35.9 12.3 205 405-632 349-583 (618)
332 PF05883 Baculo_RING: Baculovi 59.2 7.9 0.00017 34.8 2.6 52 272-324 26-86 (134)
333 KOG2933 Uncharacterized conser 59.1 54 0.0012 33.9 8.7 136 486-633 89-229 (334)
334 PF11707 Npa1: Ribosome 60S bi 59.0 2.4E+02 0.0052 29.7 16.9 154 405-558 58-240 (330)
335 PF04564 U-box: U-box domain; 58.7 6 0.00013 31.6 1.6 42 308-349 5-48 (73)
336 PF14500 MMS19_N: Dos2-interac 58.2 2.2E+02 0.0047 29.0 15.7 214 408-640 4-239 (262)
337 KOG2137 Protein kinase [Signal 57.3 53 0.0012 37.7 9.1 138 444-586 389-527 (700)
338 PF11865 DUF3385: Domain of un 57.1 99 0.0021 28.9 9.8 142 445-594 11-155 (160)
339 cd03567 VHS_GGA VHS domain fam 55.7 45 0.00097 30.4 6.9 69 527-595 39-115 (139)
340 PF08167 RIX1: rRNA processing 55.5 36 0.00078 31.9 6.6 108 445-555 26-143 (165)
341 KOG2137 Protein kinase [Signal 55.5 97 0.0021 35.7 10.8 132 402-538 388-520 (700)
342 KOG4464 Signaling protein RIC- 55.2 3.1E+02 0.0066 29.8 15.6 103 374-476 110-234 (532)
343 PF14726 RTTN_N: Rotatin, an a 55.1 55 0.0012 27.9 6.9 67 525-591 29-95 (98)
344 KOG2062 26S proteasome regulat 54.7 1.1E+02 0.0024 35.4 10.9 154 447-623 522-679 (929)
345 PF00790 VHS: VHS domain; Int 54.6 33 0.00072 31.2 6.0 73 359-431 40-117 (140)
346 KOG0301 Phospholipase A2-activ 54.4 3.2E+02 0.007 31.4 14.3 143 486-635 590-744 (745)
347 KOG1941 Acetylcholine receptor 53.9 6.7 0.00015 41.1 1.4 44 271-314 364-412 (518)
348 PF06416 DUF1076: Protein of u 53.6 8.9 0.00019 33.0 1.8 51 270-321 38-94 (113)
349 PF08216 CTNNBL: Catenin-beta- 52.2 20 0.00043 31.1 3.8 43 378-421 63-105 (108)
350 KOG1020 Sister chromatid cohes 52.1 1.3E+02 0.0029 37.6 11.7 107 485-600 816-925 (1692)
351 KOG0825 PHD Zn-finger protein 51.6 16 0.00034 41.9 3.9 39 267-305 91-136 (1134)
352 PF10521 DUF2454: Protein of u 51.3 1.1E+02 0.0024 31.4 10.0 71 485-555 119-203 (282)
353 smart00531 TFIIE Transcription 51.2 18 0.0004 33.2 3.8 38 270-319 97-135 (147)
354 KOG1814 Predicted E3 ubiquitin 51.1 16 0.00034 38.9 3.5 59 271-333 183-251 (445)
355 KOG0414 Chromosome condensatio 50.8 1.2E+02 0.0025 37.1 10.8 129 372-513 934-1063(1251)
356 KOG4739 Uncharacterized protei 50.7 7.6 0.00016 38.4 1.2 49 283-336 15-64 (233)
357 KOG2032 Uncharacterized conser 50.6 86 0.0019 34.5 9.0 171 460-636 233-414 (533)
358 KOG4362 Transcriptional regula 50.4 6.9 0.00015 44.6 0.9 50 272-321 21-72 (684)
359 PF10363 DUF2435: Protein of u 49.8 65 0.0014 27.1 6.5 72 528-600 5-76 (92)
360 KOG2956 CLIP-associating prote 49.3 4E+02 0.0087 29.4 15.7 185 361-555 286-477 (516)
361 PF08167 RIX1: rRNA processing 49.1 65 0.0014 30.2 7.2 110 486-598 26-145 (165)
362 smart00288 VHS Domain present 48.9 75 0.0016 28.6 7.3 72 567-638 37-111 (133)
363 COG5116 RPN2 26S proteasome re 48.9 1.9E+02 0.0041 32.6 11.2 98 443-554 550-649 (926)
364 COG5218 YCG1 Chromosome conden 48.0 4.7E+02 0.01 29.8 14.6 105 485-596 91-196 (885)
365 KOG2038 CAATT-binding transcri 47.5 1.5E+02 0.0031 34.6 10.4 206 362-595 197-408 (988)
366 COG5218 YCG1 Chromosome conden 46.9 93 0.002 35.0 8.6 98 526-630 91-191 (885)
367 COG5220 TFB3 Cdk activating ki 46.1 7.6 0.00016 38.0 0.3 49 271-319 9-65 (314)
368 PF00790 VHS: VHS domain; Int 45.6 67 0.0015 29.1 6.5 72 567-638 42-118 (140)
369 PF14446 Prok-RING_1: Prokaryo 45.4 16 0.00036 27.3 1.9 29 272-300 5-37 (54)
370 KOG3002 Zn finger protein [Gen 45.4 15 0.00032 38.1 2.4 59 269-334 45-104 (299)
371 PF08746 zf-RING-like: RING-li 44.7 25 0.00055 25.0 2.8 39 275-313 1-43 (43)
372 cd08050 TAF6 TATA Binding Prot 44.6 1.5E+02 0.0033 31.4 10.0 145 359-513 176-339 (343)
373 COG5116 RPN2 26S proteasome re 43.7 1.9E+02 0.0041 32.6 10.3 99 483-595 549-649 (926)
374 PF14225 MOR2-PAG1_C: Cell mor 43.6 3.7E+02 0.008 27.3 17.5 163 417-596 76-254 (262)
375 PHA02825 LAP/PHD finger-like p 42.9 29 0.00062 32.2 3.5 48 271-319 7-60 (162)
376 PF12231 Rif1_N: Rap1-interact 41.6 1.8E+02 0.0039 31.2 10.1 177 413-595 3-203 (372)
377 PRK06266 transcription initiat 41.4 44 0.00096 31.9 4.8 52 270-337 115-167 (178)
378 cd00730 rubredoxin Rubredoxin; 40.1 13 0.00029 27.4 0.8 13 268-280 30-42 (50)
379 KOG0883 Cyclophilin type, U bo 40.0 15 0.00032 38.6 1.4 66 270-336 99-174 (518)
380 PF12906 RINGv: RING-variant d 39.8 21 0.00046 25.9 1.8 29 285-313 13-47 (47)
381 TIGR00634 recN DNA repair prot 39.8 5.3E+02 0.012 29.4 14.1 73 55-132 185-263 (563)
382 smart00504 Ubox Modified RING 39.7 45 0.00098 25.2 3.8 40 308-348 2-43 (63)
383 KOG1812 Predicted E3 ubiquitin 39.6 18 0.0004 39.0 2.1 41 272-312 146-195 (384)
384 PF12830 Nipped-B_C: Sister ch 39.4 87 0.0019 30.0 6.6 69 568-641 9-77 (187)
385 PF08506 Cse1: Cse1; InterPro 39.0 3.8E+02 0.0081 28.8 11.9 130 498-633 224-370 (370)
386 COG5098 Chromosome condensatio 38.7 1E+02 0.0023 35.3 7.6 106 487-597 301-416 (1128)
387 PHA02862 5L protein; Provision 38.1 26 0.00057 31.8 2.5 45 274-319 4-54 (156)
388 TIGR00373 conserved hypothetic 37.8 27 0.00058 32.6 2.6 36 269-320 106-141 (158)
389 PF08216 CTNNBL: Catenin-beta- 37.7 35 0.00075 29.6 3.0 39 504-542 65-103 (108)
390 PF01347 Vitellogenin_N: Lipop 37.4 6.8E+02 0.015 28.6 17.0 206 362-591 348-584 (618)
391 cd00350 rubredoxin_like Rubred 37.0 16 0.00036 24.2 0.8 11 306-316 16-26 (33)
392 PLN02189 cellulose synthase 36.7 25 0.00053 42.3 2.6 45 274-318 36-87 (1040)
393 KOG4718 Non-SMC (structural ma 36.6 22 0.00048 34.3 1.8 45 273-318 182-227 (235)
394 PF10274 ParcG: Parkin co-regu 35.8 4E+02 0.0087 25.5 10.8 71 486-557 39-111 (183)
395 KOG3579 Predicted E3 ubiquitin 35.5 19 0.00041 36.3 1.3 42 271-312 267-316 (352)
396 PF04499 SAPS: SIT4 phosphatas 35.2 2.5E+02 0.0055 31.3 10.1 111 525-639 20-150 (475)
397 PF06844 DUF1244: Protein of u 34.5 24 0.00052 27.4 1.4 13 293-305 11-23 (68)
398 PF00301 Rubredoxin: Rubredoxi 34.0 17 0.00037 26.4 0.6 13 268-280 30-42 (47)
399 KOG1566 Conserved protein Mo25 34.0 5.7E+02 0.012 26.8 15.4 198 399-597 75-287 (342)
400 COG5656 SXM1 Importin, protein 33.6 8.6E+02 0.019 28.7 16.4 121 402-524 407-538 (970)
401 PF03854 zf-P11: P-11 zinc fin 33.5 20 0.00042 26.0 0.7 30 289-319 18-47 (50)
402 PF14353 CpXC: CpXC protein 33.1 35 0.00075 30.5 2.5 47 272-318 1-49 (128)
403 PF10521 DUF2454: Protein of u 32.7 1.9E+02 0.0041 29.7 8.2 70 445-514 120-203 (282)
404 PLN03076 ARF guanine nucleotid 32.7 3.9E+02 0.0084 35.0 12.2 204 414-619 1148-1403(1780)
405 KOG1243 Protein kinase [Genera 32.6 3.7E+02 0.008 31.1 10.7 188 439-639 288-477 (690)
406 KOG1788 Uncharacterized conser 32.5 1E+02 0.0022 37.1 6.4 80 518-597 900-983 (2799)
407 COG1675 TFA1 Transcription ini 32.1 1.1E+02 0.0024 29.0 5.8 52 270-337 111-163 (176)
408 PRK11088 rrmA 23S rRNA methylt 31.0 22 0.00049 36.2 1.0 26 272-297 2-30 (272)
409 KOG4464 Signaling protein RIC- 30.8 7.3E+02 0.016 27.0 15.0 151 488-638 48-228 (532)
410 COG1592 Rubrerythrin [Energy p 30.3 31 0.00068 32.4 1.7 25 272-316 134-158 (166)
411 cd03565 VHS_Tom1 VHS domain fa 29.6 3.7E+02 0.008 24.5 8.7 73 359-431 36-114 (141)
412 PF11791 Aconitase_B_N: Aconit 29.4 79 0.0017 29.2 4.1 29 486-514 95-123 (154)
413 cd00197 VHS_ENTH_ANTH VHS, ENT 29.4 2.4E+02 0.0052 24.3 7.2 70 567-636 37-113 (115)
414 KOG1020 Sister chromatid cohes 29.3 5.6E+02 0.012 32.6 12.1 141 443-595 815-959 (1692)
415 PF14663 RasGEF_N_2: Rapamycin 29.2 1.2E+02 0.0026 26.5 5.2 39 527-565 9-47 (115)
416 PF01365 RYDR_ITPR: RIH domain 29.2 1.8E+02 0.0038 28.3 7.0 97 521-620 38-153 (207)
417 PF06012 DUF908: Domain of Unk 29.1 1.7E+02 0.0036 30.9 7.2 75 460-534 238-324 (329)
418 PLN02195 cellulose synthase A 29.1 37 0.0008 40.6 2.4 45 274-318 8-59 (977)
419 cd00197 VHS_ENTH_ANTH VHS, ENT 29.1 3.4E+02 0.0073 23.4 8.1 71 360-430 36-113 (115)
420 PF08919 F_actin_bind: F-actin 29.0 3.9E+02 0.0085 23.3 8.2 104 24-133 5-108 (110)
421 PF06685 DUF1186: Protein of u 29.0 5.8E+02 0.013 25.8 10.6 101 486-607 32-153 (249)
422 PF12726 SEN1_N: SEN1 N termin 28.6 6.5E+02 0.014 29.7 12.8 152 486-638 442-608 (727)
423 PF07539 DRIM: Down-regulated 27.9 3.3E+02 0.0072 24.8 8.0 111 485-606 17-134 (141)
424 PRK09169 hypothetical protein; 27.7 1.6E+03 0.036 30.1 19.8 68 362-429 164-232 (2316)
425 KOG3899 Uncharacterized conser 27.4 31 0.00067 34.9 1.2 29 293-321 328-368 (381)
426 PLN02436 cellulose synthase A 27.3 43 0.00093 40.4 2.6 46 273-318 37-89 (1094)
427 PF07191 zinc-ribbons_6: zinc- 27.2 5.5 0.00012 31.5 -3.2 42 272-319 1-42 (70)
428 PHA03096 p28-like protein; Pro 26.9 38 0.00083 34.8 1.9 44 273-316 179-232 (284)
429 PF06012 DUF908: Domain of Unk 26.7 2.1E+02 0.0045 30.2 7.4 75 500-574 237-323 (329)
430 PF14631 FancD2: Fanconi anaem 26.5 3.4E+02 0.0074 34.7 10.2 148 443-596 430-587 (1426)
431 PF13251 DUF4042: Domain of un 26.3 5.8E+02 0.013 24.4 10.0 111 486-597 40-175 (182)
432 KOG2032 Uncharacterized conser 26.2 9.4E+02 0.02 26.8 18.0 266 361-638 258-531 (533)
433 PF14225 MOR2-PAG1_C: Cell mor 25.4 7.3E+02 0.016 25.2 13.0 142 485-638 60-217 (262)
434 COG2176 PolC DNA polymerase II 24.7 55 0.0012 39.9 2.8 43 265-319 907-951 (1444)
435 cd08050 TAF6 TATA Binding Prot 24.6 4.7E+02 0.01 27.7 9.7 109 445-553 211-338 (343)
436 PF01417 ENTH: ENTH domain; I 24.5 4.7E+02 0.01 23.0 8.3 94 541-639 18-122 (125)
437 PF13811 DUF4186: Domain of un 23.5 51 0.0011 28.5 1.6 45 284-337 64-110 (111)
438 KOG2199 Signal transducing ada 23.2 4.4E+02 0.0094 28.4 8.6 89 330-431 27-117 (462)
439 COG3813 Uncharacterized protei 23.0 78 0.0017 25.0 2.4 35 291-328 28-62 (84)
440 KOG4231 Intracellular membrane 22.6 64 0.0014 35.5 2.5 59 578-636 339-397 (763)
441 KOG3268 Predicted E3 ubiquitin 22.6 62 0.0013 30.3 2.2 45 274-318 167-228 (234)
442 PF11791 Aconitase_B_N: Aconit 22.4 1.2E+02 0.0026 28.1 3.9 86 530-626 41-142 (154)
443 PHA02687 ORF061 late transcrip 22.1 3.6E+02 0.0077 25.7 6.9 47 50-102 167-213 (231)
444 PF12830 Nipped-B_C: Sister ch 21.7 4.6E+02 0.0099 25.0 8.2 68 359-431 6-73 (187)
445 KOG4713 Cyclin-dependent kinas 21.5 1.2E+02 0.0025 28.6 3.6 46 59-104 135-180 (189)
446 PF14663 RasGEF_N_2: Rapamycin 21.3 2.4E+02 0.0052 24.7 5.6 37 568-605 9-45 (115)
447 PF08506 Cse1: Cse1; InterPro 21.1 1E+03 0.023 25.5 13.8 91 497-591 267-370 (370)
448 PRK14892 putative transcriptio 21.1 94 0.002 26.6 2.8 56 267-337 16-71 (99)
449 cd08329 CARD_BIRC2_BIRC3 Caspa 21.1 2.2E+02 0.0047 24.0 5.1 61 46-107 7-68 (94)
450 cd03562 CID CID (CTD-Interacti 20.8 2.8E+02 0.0061 23.8 6.0 71 567-637 37-107 (114)
451 PF12783 Sec7_N: Guanine nucle 20.7 4.8E+02 0.01 24.1 8.0 78 520-599 67-149 (168)
452 smart00638 LPD_N Lipoprotein N 20.6 1.3E+03 0.027 26.2 16.6 130 445-591 394-540 (574)
453 PF00096 zf-C2H2: Zinc finger, 20.5 33 0.00072 20.1 -0.0 13 273-285 1-13 (23)
454 KOG3842 Adaptor protein Pellin 20.2 92 0.002 32.0 3.0 51 269-319 338-415 (429)
455 PF08271 TF_Zn_Ribbon: TFIIB z 20.2 23 0.0005 25.0 -0.9 18 306-323 18-35 (43)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3e-27 Score=284.20 Aligned_cols=281 Identities=20% Similarity=0.205 Sum_probs=253.6
Q ss_pred hHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh
Q 006494 359 LIEEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET 435 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 435 (643)
....+..+++.|+++ +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|.+++..+|++|+.+|.||+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 357899999999966 7899999999999999999999999986 8999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc---ccccch-hhccCChHHHHHHcccCCh---hhHHHHHHH
Q 006494 436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML---DENRVM-VGNLNGIPPLVNLLRYGSI---RGKKDAATA 508 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~-i~~~g~i~~Lv~lL~s~~~---~~k~~A~~a 508 (643)
++..|+..|++++|+++|++|++++|++|+++|++|+.. +.++.. +...|+||+|+.++++++. .++..|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999976 445545 4569999999999998742 345677899
Q ss_pred HHHhhcCCCchH-HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCC-hHHHH
Q 006494 509 LFNLSINQSNKS-RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGT-PKNKE 585 (643)
Q Consensus 509 L~nLs~~~en~~-~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke 585 (643)
|+|||.+++++. .++++|++|.|+.+|.++++..+..|+++|.+++.+ ++++..+++.|+||.|+++|++++ +..|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 999999999975 458999999999999999999999999999999876 779999999999999999998754 58999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCC---------HHHHHHHHHHHHHhhhc
Q 006494 586 CATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT---------NRGQRKANSLLQHMSKR 639 (643)
Q Consensus 586 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~---------~~~k~~A~~lL~~l~~~ 639 (643)
+|+++|.+||.++++....+.+.|+++.|+.++...+ ...++.|.+.|.++++.
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999987544 34589999999999873
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.7e-26 Score=275.99 Aligned_cols=281 Identities=24% Similarity=0.279 Sum_probs=250.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
..+.++.|++.|.+++...|..|++.|+++++.+++++..++++|+||+|+++|++++.++|++|+++|.|++.++.++.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999998876655
Q ss_pred HHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-------------------------------------ch
Q 006494 439 HIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-------------------------------------VM 480 (643)
Q Consensus 439 ~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~ 480 (643)
.++ +.|++++|+++|++++.+.+..|+++|++|+...+.. ..
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 554 8899999999999999999999999999996322111 01
Q ss_pred -hhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC--
Q 006494 481 -VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-- 556 (643)
Q Consensus 481 -i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-- 556 (643)
....|+++.|++++++++...++.|+++|.|++. +++++..++..|++++|+.+|.+++.+++.+|+++|.||+..
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 1136899999999999999999999999999997 555688899999999999999998889999999999999964
Q ss_pred hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
++.+..+++.|++++|+++|++.+...++.|+.+|.+++.... ....+.+.|++++|++++++|+++.|+.|++.|..|
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4556778899999999999999999999999999999999765 455566789999999999999999999999999999
Q ss_pred hhcc
Q 006494 637 SKRE 640 (643)
Q Consensus 637 ~~~~ 640 (643)
++..
T Consensus 763 ~~~~ 766 (2102)
T PLN03200 763 LKHF 766 (2102)
T ss_pred HhCC
Confidence 8754
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.9e-26 Score=225.85 Aligned_cols=276 Identities=22% Similarity=0.352 Sum_probs=257.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..+..|+..+.++..++|+.++.+|-+|+. .+.+|..++..|++.+|.++-++.|..+|.++..+|.|+....+|+..+
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 456778877778888999999999999994 5899999999999999999889999999999999999999999999999
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccC--ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLN--GIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
+.+|++|.|+.++++++.++++.+..++.+++.+..+|..+.+.+ .++.|+++++++++.+|..|..+|.||++..+.
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 999999999999999999999999999999999999999999977 999999999999999999999999999999999
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhccC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLLELGLN 597 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~ 597 (643)
...++++|.+|.++++|.++.....-..++++.|++-++-+..-|+++|++.+||.+|+-++ ++.|-+|+.+|++|+..
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 99999999999999999888777888889999999999999999999999999999999865 66999999999999998
Q ss_pred CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.......+.+.|++|.|.+++.+|.-..+..-...+..|.
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 8888888999999999999999999888877777766654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.7e-25 Score=218.85 Aligned_cols=277 Identities=22% Similarity=0.303 Sum_probs=253.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
+++..+.++-++.+..+|..+...|.+++ ++.++|+.++.+|++|.|+.+++++|.++|+.+.+++.|++.+..++..+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 56777888667888899999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred HhcC--ChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 441 AREG--AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 441 ~~~g--~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
+..+ .++.|+.++.++++.++-.|.-+|.+|+.+.+++..|.+.|++|.++.+|++.........+.++.|++.++-|
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 9766 99999999999999999999999999999999999999999999999999988777777888999999999999
Q ss_pred hHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 519 KSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
...++++|.+.+|+++|.. .+.+.+-+|..+|+||+.. ..++..|.+.|+||.+.+++..++-..|+.-..++..|+-
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999999987 4556999999999999995 7789999999999999999999998888887777777776
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 597 NNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 597 ~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
++ .....+.+.|+++.|.....+.+.+++.+|+..|-+|+..
T Consensus 406 ~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 406 ND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 54 4456678899999999999999999999999999999753
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-22 Score=216.64 Aligned_cols=278 Identities=18% Similarity=0.226 Sum_probs=246.2
Q ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHH
Q 006494 361 EEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKR 438 (643)
Q Consensus 361 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~ 438 (643)
+.++.+|..|. ..++..+.+|+++|.+++.++.+.-..++++|++|.++.++.+++..+++.|+++|.|++.+. ..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 67999999997 456899999999999999999999999999999999999999999999999999999999765 5566
Q ss_pred HHHhcCChHHHHHHHccCCH-HHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 439 HIAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
.+.+.|++++|+.++...+. ....+++++|.||+....-...+.. ..++|.|..++.+.+..+..+|++||.+|+..+
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 67799999999999987754 6778999999999976643333333 578999999999999999999999999999644
Q ss_pred -CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006494 517 -SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLE 593 (643)
Q Consensus 517 -en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~ 593 (643)
+....++++|+++.|+.+|......++.-|+.++.|++... .-.+.+...|+++.|..++.. .....|..|++++.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 45667788999999999999888889999999999999984 556677788999999999984 455688999999999
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++.++.+..+.+.+.|++|.|+.+++++.-+.|+.|++.+.++.-
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998864
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.4e-20 Score=197.51 Aligned_cols=281 Identities=20% Similarity=0.245 Sum_probs=244.5
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCH-HHHHHHHHHHHhcccChhhH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~k 437 (643)
+.+.++.++.++.+++.+++..|+++|.+++.+++..|..+.+.|++++|+.++...+. ....++.++|.||+.+.+-.
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 45789999999999999999999999999999999999999999999999999988765 67889999999999765322
Q ss_pred HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 438 RHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 438 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
..+. -..++|.|..++.+.+.++...|++++.+|+... +.-..+.+.|+++.|+.+|.+.+..++.-|+.++.|+...
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 2222 3457999999999999999999999999999544 4555667799999999999999988999999999999886
Q ss_pred CCc-hHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494 516 QSN-KSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL 592 (643)
Q Consensus 516 ~en-~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 592 (643)
.+. ...++..|+++.|..++.. ....++.+|++++.|++.. .+...+++++|.+|.|+.+|+++.-+.|..|++++.
T Consensus 310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 665 6677889999999999984 5566899999999999987 678889999999999999999999999999999999
Q ss_pred HhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 593 ELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 593 ~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
|++.++ ++....+++.|++++|..++..-+.+.-..+...|.++-+.
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 999765 55667788899999999999888888888888888887653
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=3e-20 Score=183.85 Aligned_cols=279 Identities=14% Similarity=0.162 Sum_probs=239.4
Q ss_pred hHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhh-
Q 006494 359 LIEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN- 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~- 436 (643)
+.+.++++|+.+. ....-.+.+|++.|-+++......-+.++++|++|.++.+|.+++.++++.++++|.|++-+...
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 4578999999995 44555788999999999977666666678999999999999999999999999999999977654
Q ss_pred HHHHHhcCChHHHHHHHccCC--HHHHHHHHHHHHHccccccccchhh-ccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 437 KRHIAREGAIPAIIEILQNGT--NEARENSAAALFSLSMLDENRVMVG-NLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
|..+...|++++++.+|.+.. .....++.++|.||+....-.-.-. -..++|.|.+++-+.++++..+|++||..|+
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 566669999999999998753 4677899999999985433211111 1458999999999999999999999999999
Q ss_pred cCCC-chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 514 INQS-NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 514 ~~~e-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
-.+. ....+++.|..+.|+++|.+++..++.-|+..+.|+....+ ....++..|+++.+-.+|.+..+..|..|++++
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 7554 45667789999999999999888999999999999999854 456677889999999999988889999999999
Q ss_pred HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.++..++.+..+.+++.+.+|+|+.++..-.-..|+.|++.+.+..
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888764
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.84 E-value=1.5e-21 Score=157.76 Aligned_cols=72 Identities=51% Similarity=0.943 Sum_probs=63.5
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN 340 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~ 340 (643)
+|++|.||||+++|.|||++++||||||.+|++|+..++.+||+|++++...+++||..||..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 599999999999999999999999999999999999988999999999999999999999999999999874
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.83 E-value=7e-20 Score=181.30 Aligned_cols=277 Identities=20% Similarity=0.249 Sum_probs=240.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHh-hhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRML-SKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
...+|.|.+.|.|.+.+.+..|+...|.+ +++....-..+.++|++|.++.++. ....-.+-.|.++|-|++....++
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 34789999999999999999999988865 4444444556778999999999994 445566789999999999988888
Q ss_pred HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCC--hhhHHHHHHHHHHhh
Q 006494 438 RHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGS--IRGKKDAATALFNLS 513 (643)
Q Consensus 438 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~--~~~k~~A~~aL~nLs 513 (643)
..++ ++|++|.++.+|.+++.++++++.++|.|++.+.+ .|..+.+.|++.+|+.++.+.. ....+++.++|.|||
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 7776 99999999999999999999999999999998776 7888889999999999998764 478899999999999
Q ss_pred cCC---CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494 514 INQ---SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATS 589 (643)
Q Consensus 514 ~~~---en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 589 (643)
... ++...+ ..++|.|.+++.+.++++...|++++..|+..+ +.-.++.+.|+.+.|+++|.+.+..++.-|+.
T Consensus 230 RGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 230 RGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred CCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 732 344444 347999999999999999999999999999984 67778888999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
...++..++....+.+++.|+++.+..++.+.-++.|+.|++.+.++..
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 9999999998888889999999999999999999999999999988753
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.78 E-value=5.9e-17 Score=182.00 Aligned_cols=279 Identities=22% Similarity=0.276 Sum_probs=228.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
.++.++.|++.|.+++.+....++..|..|+ -..+|+..+.+.|+|+.|++++.+++.+.+..++.+|.|||.++++|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999 567899999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCC
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQS 517 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e 517 (643)
.|++.|.+|.|+.+|.+++ .+..+.++|.+||.++++|..+...++++.|++++-++ ..++...++.++.||+.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999999999998764 45678999999999999999999999999999987554 55566667777777777777
Q ss_pred chHHHHhcCcHHHHHHH-------------------------------------hcc-CChhhHHHHHHHHHHH------
Q 006494 518 NKSRAIKAGIIPSLLKL-------------------------------------LED-KALGMVDEALSILQLL------ 553 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~l-------------------------------------L~~-~~~~~~~~Al~iL~nL------ 553 (643)
|...+.+.|+++.|++. +.. .+.+..-+++++|+||
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 77766666666554322 111 1223334455555555
Q ss_pred --------------------------------------hCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006494 554 --------------------------------------ASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLE 593 (643)
Q Consensus 554 --------------------------------------a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~ 593 (643)
|..+.....+++.|.++.|+++|+.. +++.--..+.++..
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 44455666677889999999999874 45666677888899
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~ 640 (643)
+..++..+...+.+.+++..|+.++++.++.+++.|-.+|-.+.++.
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99998877777777899999999999999999999999999887643
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=6.3e-17 Score=181.74 Aligned_cols=256 Identities=20% Similarity=0.245 Sum_probs=221.2
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL 453 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 453 (643)
.....+.+...|.+++ .++.+...+.+.|.++.|+++|.+++.++...+++.|.+||...+||..|.+.|+++.|++++
T Consensus 262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 3445566788899999 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH
Q 006494 454 QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLK 533 (643)
Q Consensus 454 ~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~ 533 (643)
.+++.+.+..+..+|+|||++.+.|..|++.|.+|.|+.+|.+++ .+..++.+|+|||..+++|..+...+++|.|++
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 999999999999999999999999999999999999999998654 456789999999999999999999999999999
Q ss_pred Hhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Q 006494 534 LLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYE 612 (643)
Q Consensus 534 lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~ 612 (643)
+|.. +++.+..++++++.||+.++.+.+.+.+.++++.|++......+ ...+.++.|++.+++.....+ .+.++
T Consensus 419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f--~~~i~ 493 (708)
T PF05804_consen 419 MLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELF--VDFIG 493 (708)
T ss_pred HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHH--HHHHH
Confidence 9866 45567777899999999999999999998999999987655432 235679999999986544444 35788
Q ss_pred HHHHHHhhC-CHHHHHHHHHHHHHhh
Q 006494 613 HLVEITRCG-TNRGQRKANSLLQHMS 637 (643)
Q Consensus 613 ~L~~ll~~g-~~~~k~~A~~lL~~l~ 637 (643)
.|+.++.++ ++...--+..+|.+|.
T Consensus 494 ~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 494 DLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 888888776 5666677777777764
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=2.3e-15 Score=165.42 Aligned_cols=281 Identities=20% Similarity=0.243 Sum_probs=232.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---hhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---ETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~k 437 (643)
-.++..+.+|.+.++.+|-.|+..+..+++.+.+.|..+.+.|+|+.||.+|.+...++|.+|+.+|.||... ++||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4688889999999999999999999999999999999999999999999999999999999999999999853 4689
Q ss_pred HHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccch------------------------------------
Q 006494 438 RHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVM------------------------------------ 480 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~------------------------------------ 480 (643)
..|.+.++|+.++++|+. +|.+++++.+++|+||+..|..|..
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 999999999999999986 7999999999999999877554332
Q ss_pred -------------------hhc-cCChHHHHHHccc--------------------------------------------
Q 006494 481 -------------------VGN-LNGIPPLVNLLRY-------------------------------------------- 496 (643)
Q Consensus 481 -------------------i~~-~g~i~~Lv~lL~s-------------------------------------------- 496 (643)
+.+ .|.|..|+..+++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 222 2566666666540
Q ss_pred ----------------------------------------------------------CChhhHHHHHHHHHHhhcCCC-
Q 006494 497 ----------------------------------------------------------GSIRGKKDAATALFNLSINQS- 517 (643)
Q Consensus 497 ----------------------------------------------------------~~~~~k~~A~~aL~nLs~~~e- 517 (643)
.+..+.+.++.||.||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 011223355666666664322
Q ss_pred ----chHHH-HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC------hHHHHH
Q 006494 518 ----NKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT------PKNKEC 586 (643)
Q Consensus 518 ----n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~ 586 (643)
.+..+ ....+.++|+++|..++..++..+..+|.||+.+..++..|. .++++.|++.|..+. ++.-..
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 12333 456778899999999999999999999999999999999998 589999999998743 466677
Q ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhhccCC
Q 006494 587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSKREHI 642 (643)
Q Consensus 587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~~~e~ 642 (643)
++.+|+++...+......+.+.+.++.|+.|..+. ++++-+.|..+|..|+.+.|+
T Consensus 632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998765 679999999999999887664
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=3.1e-15 Score=169.85 Aligned_cols=262 Identities=19% Similarity=0.219 Sum_probs=224.9
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC------------CHHHHHHHHHHHHhcccCh-hhHHHHH-hc
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP------------DSKIQEHTVTALLNLSLDE-TNKRHIA-RE 443 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~nLs~~~-~~k~~i~-~~ 443 (643)
.+.|+..|..++ -++++|+.+.+.|++..+-.|+.-. ...++.+|..+|-||...+ .||..+. ..
T Consensus 315 lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 346777888887 4789999999999999998877531 2357889999999999765 6788887 68
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCch
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSNK 519 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en~ 519 (643)
|+++.||..|.+...+..+..+++|.||+..-+ .+..+.+.|.+..|+... +.......+..+.||+||+. +.+||
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 999999999999999999999999999996544 566677789999988774 66677788889999999997 77899
Q ss_pred HHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494 520 SRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH----PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSV 590 (643)
Q Consensus 520 ~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~ 590 (643)
..|.+ .|++..|+.+|.-. .-.+.+.|=.||.|++++ ++.|+.+.+.+++..|+..|++.|-.+--+|+.+
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 99998 89999999999653 346788999999998875 6678888889999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494 591 LLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~ 640 (643)
||||...+++..+.+++.|+++.|..|+++.+.-+-+-++..|++|-.+.
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999888888888888876543
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.9e-14 Score=140.15 Aligned_cols=277 Identities=17% Similarity=0.213 Sum_probs=232.2
Q ss_pred HHHHHHHHhhc--CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494 361 EEICSLIQNLS--SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k 437 (643)
.....++..|. ..+.++....+..++.-+..++.||..+.+.++.+.+...|... ..++...+..++.-|..+++.|
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 45556666664 45667777788888888888999999999999999999777654 3357777888888887666433
Q ss_pred ----------HHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCC-h---hhH
Q 006494 438 ----------RHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-I---RGK 502 (643)
Q Consensus 438 ----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~---~~k 502 (643)
..|+..|++..|++.++.+ ++........+|..|+..++.+..|.+.|++..|+.++.+.+ . ...
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 3566788999999999976 688888899999999999999999999999999999997743 3 244
Q ss_pred HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcC
Q 006494 503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNG 579 (643)
Q Consensus 503 ~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~ 579 (643)
+.++..|..|+-+..++..|++.|+.+.++.++.. .++.+.++++.++..|+-. |+....+++.|+-...++-++..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 67788899999999999999999999999999854 6888999999999999986 88888999999999999999874
Q ss_pred C--hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 580 T--PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 580 s--~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
. ...|.+|+..+.|+..++.+.+..++..| ++.|+......++.....|...||-|.-
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 3 56789999999999999999888887766 7888888888888888888889988753
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.63 E-value=2.7e-16 Score=123.83 Aligned_cols=63 Identities=59% Similarity=1.061 Sum_probs=60.4
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW 335 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 335 (643)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|++++...+++||..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999987 67999999999999999999999999988
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.2e-13 Score=131.93 Aligned_cols=263 Identities=17% Similarity=0.255 Sum_probs=217.9
Q ss_pred cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChH
Q 006494 371 SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLS-LDETNKRHIAREGAIP 447 (643)
Q Consensus 371 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~ 447 (643)
.+++.....+++..|..+...-|. +.++.+...++.+|.. .+.++....+..+..-+ .++.||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456777888999999988855444 4566678888998864 35566555555555544 5789999999999999
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHccccccccchhh----------ccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcC
Q 006494 448 AIIEILQN-GTNEARENSAAALFSLSMLDENRVMVG----------NLNGIPPLVNLLRYG-SIRGKKDAATALFNLSIN 515 (643)
Q Consensus 448 ~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~----------~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~ 515 (643)
.+...|.. |..++.....+++..|..+|+.|..++ ..|++..|+..++.+ ++.....++.+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99977754 445666678889999988888776554 346788999999887 688888999999999999
Q ss_pred CCchHHHHhcCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHH
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDK----ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTPKNKECATS 589 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~ 589 (643)
.+.+..+.++|++..|++++.+. +..+...++..|..|+.+++.+.+|++.|+.+.++.++.. .+|.+.+.++.
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999873 3346678999999999999999999999999999998754 67899999999
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCC--HHHHHHHHHHHHHhh
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGT--NRGQRKANSLLQHMS 637 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~--~~~k~~A~~lL~~l~ 637 (643)
++..||-..|++...+.+.|+-...+..+.... ..++++|..++|++.
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888765 456899999999985
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=7.5e-13 Score=132.87 Aligned_cols=193 Identities=25% Similarity=0.347 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494 359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
+.+.++.|+..|.+ .++.++..++..+.+.+ ..+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45789999999984 58999999999999987 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 438 RHIAREGAIPAIIEILQNG--TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
..|-. +++.+++.+.+. +.+.+..+..+|.+|+..++++..+.. .++.++.+|.+|+..+|..++.+|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 98854 688888876654 567888999999999999888877754 799999999999999999999999999999
Q ss_pred CCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 006494 516 QSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH 556 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~ 556 (643)
+.+...++.++++..++.++.. .+.++...++.+..|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999976 4678899999999999886
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.48 E-value=2e-12 Score=129.84 Aligned_cols=194 Identities=22% Similarity=0.239 Sum_probs=170.9
Q ss_pred HhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc
Q 006494 400 ANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR 478 (643)
Q Consensus 400 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k 478 (643)
.+.+.++.|+.+|+. .|+.+|+.+..++.|.+..+.++..|.+.|+++.+..+|.++++.++..|..+|.||+...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456678899999985 5899999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhccCChHHHHHHcccC--ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 479 VMVGNLNGIPPLVNLLRYG--SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 479 ~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
..|-. .++.+...+.+. +..++..++.+|.||+...+.+..+. +.++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 577777765554 67888999999999998877766664 4799999999999999999999999999999
Q ss_pred hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccC
Q 006494 557 PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLN 597 (643)
Q Consensus 557 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~ 597 (643)
+.....+..+++++.++.++... +.+.-..++.+..+|..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874 566778888888888654
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=1.1e-10 Score=129.75 Aligned_cols=277 Identities=17% Similarity=0.177 Sum_probs=222.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
....+.|...|.++++.++.-+++.|+.+..++......+.+.+.++.++.++.++|..+...|+.+|.+++.++.+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45678888999999999999999999999977766666677899999999999999999999999999999998888888
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
+++.+.+..|..++...+..+|..+..++.+++.. ++....+...|.++.++..+++++.-++.+|+.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88888899999999887778888888899999754 45666777789999999999998989999999999999999999
Q ss_pred hHHHHhcCcHHHHHHHhccC--Ch---h-hHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 519 KSRAIKAGIIPSLLKLLEDK--AL---G-MVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~--~~---~-~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
...+.+.|+++.|..++.+. ++ . ..-..+...++++.. +..... .-...+..+.+++.+.++..+..|..++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999999999762 22 1 233445777778774 221111 1124566667777888999999999999
Q ss_pred HHhccCCHHHHHH-HHHcCc----HHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 592 LELGLNNSYFILA-ALQYGV----YEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 592 ~~L~~~~~~~~~~-~~~~g~----i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..+|+...+.... ....+. +........+|+...|-++...|..+-
T Consensus 315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9999877665554 223334 444444556778888999988888874
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=4.4e-11 Score=136.87 Aligned_cols=225 Identities=20% Similarity=0.220 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHH-hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHHHHHhcCChHHHHHH
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIA-NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKRHIAREGAIPAIIEI 452 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~l 452 (643)
..|.-|..+|-||+..+..|+..+. ..|+++.+|..|.+...+++.....+|.||+.. ...|..+-+.|-+..|+..
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 3566688889999999888888885 479999999999998778888889999999965 3446666688988888875
Q ss_pred -HccCCHHHHHHHHHHHHHccc-cccccchhhc-cCChHHHHHHcccC----ChhhHHHHHHHHHHhhc----CCCchHH
Q 006494 453 -LQNGTNEARENSAAALFSLSM-LDENRVMVGN-LNGIPPLVNLLRYG----SIRGKKDAATALFNLSI----NQSNKSR 521 (643)
Q Consensus 453 -L~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~----~~en~~~ 521 (643)
|++...........+||||+. ..+||..|.+ .|++..|+.+|.-. ...+.+.|-.+|.|+++ +.+.|..
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 556666677888999999984 5679999998 89999999999543 45677888899999875 4556778
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY 600 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 600 (643)
+.+..++..|++.|++..-.++..++.+||||+.. ++.++.+.+.|+|+.|..++++.+...-+-++.+|.||..+.+.
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 88899999999999998888999999999999885 88999999999999999999999999999999999999887654
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.26 E-value=1.7e-10 Score=127.57 Aligned_cols=235 Identities=23% Similarity=0.317 Sum_probs=179.1
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc---cccccc
Q 006494 404 GIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM---LDENRV 479 (643)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~---~~~~k~ 479 (643)
-++..+.+|.+.++.+|-+|..-|-.++. +++.|..+..-|+|+.||.+|.....+++.+|+++|.||++ +++|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 35677888999999999999999999985 45778888899999999999999999999999999999985 345899
Q ss_pred hhhccCChHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC--------------ChhhHH
Q 006494 480 MVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK--------------ALGMVD 544 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--------------~~~~~~ 544 (643)
.|.+.++|+.++.+|+. ++.++++....+|+||++++.-+..++.. ++..|..-+-.+ ...+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999986 78999999999999999996666666553 455554433110 123445
Q ss_pred HHHHHHHHHhC-ChhhHHHHHhc-CcHHHHHHHHh---------------------------------------------
Q 006494 545 EALSILQLLAS-HPEGRNEIGRL-SFIETLVEIIK--------------------------------------------- 577 (643)
Q Consensus 545 ~Al~iL~nLa~-~~~~~~~i~~~-g~i~~Lv~lL~--------------------------------------------- 577 (643)
.+..+|.|+++ ..++|+.+.+. |.|..|+..++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 56666666666 35556555553 45555555543
Q ss_pred ---------------------------------------------------------cCChHHHHHHHHHHHHhccCCH-
Q 006494 578 ---------------------------------------------------------NGTPKNKECATSVLLELGLNNS- 599 (643)
Q Consensus 578 ---------------------------------------------------------~~s~~~ke~A~~~L~~L~~~~~- 599 (643)
+..+.+.|.++.+|-+|+.+..
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 2334556777788888877643
Q ss_pred ---HHHHHH-HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 600 ---YFILAA-LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 600 ---~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
..+..+ .++.+.+.|+++++++++++.+.+..+|++|+..
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 223333 5678899999999999999999999999999753
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.21 E-value=8.2e-10 Score=113.60 Aligned_cols=263 Identities=16% Similarity=0.137 Sum_probs=191.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC------------------------
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP------------------------ 415 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~------------------------ 415 (643)
.+.+..|.+..+|++.++-.+..+.|.+.+..+.++|..+-+.|+-..++++|+..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777777777777777788888888877888888877777766566655430
Q ss_pred -----------------------------------------------------------------------CHHHHHHHH
Q 006494 416 -----------------------------------------------------------------------DSKIQEHTV 424 (643)
Q Consensus 416 -----------------------------------------------------------------------~~~~~~~a~ 424 (643)
+++..+...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 111222233
Q ss_pred HHHHhcccChhhHHHHHhcCChHHHHHHHcc-CC----HH---HHHHHHHHHHHccccccccchhhccC-ChHHHHHHcc
Q 006494 425 TALLNLSLDETNKRHIAREGAIPAIIEILQN-GT----NE---ARENSAAALFSLSMLDENRVMVGNLN-GIPPLVNLLR 495 (643)
Q Consensus 425 ~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~----~~---~~~~Aa~~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~ 495 (643)
++|...+.++..|-.+++.|.+..+++++++ .+ .+ .-..++-...-|...++.-..+...+ .++.+++.++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 3333444455555566677777777777765 11 11 11223333333445555555565544 8899999999
Q ss_pred cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494 496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~ 570 (643)
+.+......+..+|.|++....++..+++.|.+..|+++|.. ++-..+..++.+|.||.-...++.++..+|++.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvte 405 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTE 405 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHH
Confidence 999999999999999999999999999999999999999954 455678889999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhCC
Q 006494 571 TLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCGT 622 (643)
Q Consensus 571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~ 622 (643)
.++.+++..+|..+-.-+.+|..+-.+.+. .++.......+..|+.-..+.+
T Consensus 406 aIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 406 AILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 999999999999998889998887766552 3344444566777777776554
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4e-09 Score=109.73 Aligned_cols=277 Identities=17% Similarity=0.224 Sum_probs=203.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
.++.+..||+.|..++.+...-...-|..|+ -..+|+..+.+.|.|+.|++++...+++.+...+..|.|||.+..++.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 4678888999998888787777888888888 467899999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC---------------------
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--------------------- 497 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--------------------- 497 (643)
.|+..|.+|.++.+|.+.+. ...|...++.+|.+++.|..+....+|+.+.+.+-++
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999976542 2235666677777766666665555555555443222
Q ss_pred -----------------------------------------------------------ChhhHHHHHHHHHHhhcCCCc
Q 006494 498 -----------------------------------------------------------SIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 498 -----------------------------------------------------------~~~~k~~A~~aL~nLs~~~en 518 (643)
+......++.+|.||....-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 111222344444444443333
Q ss_pred hHHHHh-cCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006494 519 KSRAIK-AGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLE 593 (643)
Q Consensus 519 ~~~iv~-~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~ 593 (643)
...+++ ...||-+-..|.. ...+++-..+-.+..++....+...+..++.|+.++++|+.. +++.--.-..+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 344433 4556666666654 234566667777788888888888888889999999999873 33334445556667
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+..+...+...+.+...-..|..++++.+..+|+.+-..|-.+..
T Consensus 619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 777766666667777777889999999999999888888877654
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.19 E-value=2.9e-10 Score=100.88 Aligned_cols=117 Identities=29% Similarity=0.367 Sum_probs=107.3
Q ss_pred hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-
Q 006494 480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP- 557 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~- 557 (643)
.+.+.|+++.|+.++.+++...+..|+.+|.+++.. ++.+..+++.|+++.++++|.++++.++..|+++|.+|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999986 778889999999999999999989999999999999999985
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 558 EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 558 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
..+..+...|+++.+++++.+.+...++.|+.+|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 566777788999999999999999999999999999974
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.19 E-value=6.5e-10 Score=98.65 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=110.2
Q ss_pred HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.+++.|+++.|+++|.+.+..++..++.+|.+++.. ++.+..+.+.|+++.++++|.+.++..+..|+.+|.+++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999998889999999999999998 8889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.....+.+.|+++.|..++.+++.++++.|..+|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888888999999999999999999999999999886
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=2.5e-09 Score=119.11 Aligned_cols=270 Identities=16% Similarity=0.149 Sum_probs=210.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH-hc
Q 006494 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA-RE 443 (643)
Q Consensus 365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~ 443 (643)
.++..|.+.+.+....++..|..+.... ..... ..+..+.|...|.++++.++..++..|.++..++.....++ +.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 3778888777777777777787776422 22222 45677889999999999999999999999887776655544 88
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHH
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRA 522 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~i 522 (643)
+.++.++..|.+++.++...|+.+|..|+........+...+.+..|..++...+..++..+..++.+++.. ++.....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999998887777788888899999999887878888899999999875 4556666
Q ss_pred HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH------HHHHHHHhcc
Q 006494 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC------ATSVLLELGL 596 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~------A~~~L~~L~~ 596 (643)
...|.++.++..|.+++.-++..|+.+|..|+..+.+...+.+.|+++.|+.++.+.+.+-+-. .+....+++.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 7799999999999987777889999999999999999999999999999999997643221111 1233444555
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 597 NNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 597 ~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
..+..... .-...+..|...+.++++..+..|...+-.++.
T Consensus 279 ~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 279 VSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred cChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 43332221 113456677777788888888888888887764
No 27
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.5e-10 Score=105.51 Aligned_cols=79 Identities=32% Similarity=0.472 Sum_probs=73.1
Q ss_pred hhcCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494 263 RCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV 341 (643)
Q Consensus 263 ~~~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~ 341 (643)
+....++|+..+|.|+.++|++||++|+|.||+|.-|.+++..-....|+|+.+|....++||..++..|..|...|..
T Consensus 202 ~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 202 KRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred HhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 4456789999999999999999999999999999999999997667899999999999999999999999999988764
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.7e-09 Score=110.98 Aligned_cols=242 Identities=19% Similarity=0.163 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC
Q 006494 377 IKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG 456 (643)
Q Consensus 377 ~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~ 456 (643)
....|+.-|-+++ ++......+.....+..||+.|...+.+.....+..|..||+-.+||..|...|.++.|++++...
T Consensus 279 LLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 3455777888888 455555556677888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc
Q 006494 457 TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE 536 (643)
Q Consensus 457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~ 536 (643)
+++.+......++|||++..++..++..|.+|.|+.+|.+++. ...|+..|+.++.+...+..+....+|+.+.+.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987653 34688899999999999999999999999998886
Q ss_pred cCChhhHHHHHHHH-HHHhCChhhHHHHHhcCcHH-------------------------------------HHHHHHhc
Q 006494 537 DKALGMVDEALSIL-QLLASHPEGRNEIGRLSFIE-------------------------------------TLVEIIKN 578 (643)
Q Consensus 537 ~~~~~~~~~Al~iL-~nLa~~~~~~~~i~~~g~i~-------------------------------------~Lv~lL~~ 578 (643)
++...-++.++-++ .|||.+..+.+.+.+..++. .|...+.+
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n 515 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN 515 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc
Confidence 64333333333333 46666544433333322222 22222322
Q ss_pred C-ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494 579 G-TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 579 ~-s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g 621 (643)
. ++.---.++++|.+|.-.+-.....+.....+|.+...++.|
T Consensus 516 d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 516 DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence 1 222233456677777776666777777788888888877665
No 29
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=2.2e-08 Score=102.76 Aligned_cols=223 Identities=19% Similarity=0.104 Sum_probs=153.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHH-hcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQL-LSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
..++.+...+.+.++.+|..|+..|..+.... .. ...+++.|..+ ++++++.++..|+.+|.++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 35566666667777777777777777765211 11 11244566655 56677788888888887764322111
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
...+++.+...+.+.++.+|..++.+|..+ +...+++.|+.+|.+.+..++..|+.+|.++....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 112345566666677788888888877543 33457888888888888888888888888873211
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
..+++.|+.+|.+.+..+...|+..|..+-. ..+++.|++.|.+++ .+..|+.+|..+...
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-- 251 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-- 251 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence 2467778888888888888888888876432 357888888888765 455667777666552
Q ss_pred HHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHH
Q 006494 600 YFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQ 634 (643)
Q Consensus 600 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~ 634 (643)
-++|.|..++. +.+++++.+|.+.|.
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 37899999996 789999999988875
No 30
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.02 E-value=1.7e-10 Score=82.02 Aligned_cols=39 Identities=28% Similarity=0.773 Sum_probs=31.3
Q ss_pred CccCcccccCCeecCCcccccHHhHHHHHhcCC---CCCCCC
Q 006494 275 CPVTLEIMTDPVIVATGQTYERESIQRWLNSNH---KTCPKT 313 (643)
Q Consensus 275 Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~---~~cP~~ 313 (643)
||||+++|+|||+++|||+||+.||++|++..+ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 358875
No 31
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=1.7e-10 Score=108.30 Aligned_cols=62 Identities=23% Similarity=0.498 Sum_probs=53.4
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc---------------CCCCCCCCCcccCCCCCCchhhh
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS---------------NHKTCPKTGQILDHLSLAPNYAL 328 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~---------------~~~~cP~~~~~l~~~~l~pn~~l 328 (643)
....++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.++....++|.+.-
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 345678999999999999999999999999999999852 23579999999999999987543
No 32
>PRK09687 putative lyase; Provisional
Probab=98.99 E-value=1.7e-08 Score=103.60 Aligned_cols=228 Identities=14% Similarity=0.033 Sum_probs=172.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
...+..|+..|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+.+|..|...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 4567889999999999999999999987652 23567788899999999999999999987543221
Q ss_pred HHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 440 IAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 440 i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
...+++.|..+ +++.++.+|..|+.+|.++...... ....++..+...+.+.+..++..|+.+|..+.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 12356777776 5677899999999999998532211 12235677778888889999999999996542
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
...+++.|+.+|.+++..+...|+..|..+... ...+++.|+..|.+.++.+|..|+..|..+-.
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 234889999999998889999999999988332 12567889999999999999999999877433
Q ss_pred HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
..++|.|...+.++.. +..|...|-.+..
T Consensus 222 ---------~~av~~Li~~L~~~~~--~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 ---------KRVLSVLIKELKKGTV--GDLIIEAAGELGD 250 (280)
T ss_pred ---------hhHHHHHHHHHcCCch--HHHHHHHHHhcCC
Confidence 2467888888877663 4456666655544
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.3e-08 Score=107.13 Aligned_cols=256 Identities=17% Similarity=0.168 Sum_probs=204.8
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHH-hhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcc-cChhh
Q 006494 361 EEICSLIQNLSSS-QLNIKRDSVMKIRM-LSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLS-LDETN 436 (643)
Q Consensus 361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~-La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~ 436 (643)
..+..|++.|... ++..|.+|+.++.. |...+++.-..+--...+|.|+.+|++. +.+++-.|+++|.+|+ ..+..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4788999999865 88899999999874 4444554444444456899999999975 7999999999999998 45777
Q ss_pred HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-
Q 006494 437 KRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI- 514 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~- 514 (643)
...+++.++||.++.-|..- -.++.+++..+|-.+|.. .-..|.+.|++...+..|.--+..+++.|+.+..|.|.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999888764 578889999999999863 34567889999999999988888999999999999996
Q ss_pred -CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcC----ChHHHH
Q 006494 515 -NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH----PEGRNEIGRLSFIETLVEIIKNG----TPKNKE 585 (643)
Q Consensus 515 -~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~----s~~~ke 585 (643)
.++.-..+++ ++|.|..+|...+...++.++-++..++.. ++.-+.+.+.|.|.....+|.-. +.....
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 3444444444 699999999988889999999999988874 56677788889999999988643 223344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh
Q 006494 586 CATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 586 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 620 (643)
-.+..|..+|++.+-........++...|..++..
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 56677888888878777778888999999888763
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=9.5e-10 Score=115.79 Aligned_cols=69 Identities=16% Similarity=0.349 Sum_probs=63.5
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 337 (643)
.+...|.||||.+++.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..+..+|+.|..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 46688999999999999999999999999999999986 4589999999988889999999999998864
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.92 E-value=1.9e-07 Score=99.94 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=199.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
...++..|...+.-++..|+..|..+...+..+.......-....|...|++. +...+.-++.+|.+|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 34455677777888888999888888754443211111111334566666654 47778888999999999999999888
Q ss_pred hcCChHHHHHHHccC--CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCC-
Q 006494 442 REGAIPAIIEILQNG--TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQS- 517 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e- 517 (643)
+.++++.|+.+|+.. +...+.++.-+++-||+.++....+...+.|+.|+++++.. ...+.+-++.+|.||...+.
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999863 56889999999999999988777777789999999999765 67788899999999987431
Q ss_pred ------chHHHHhcCcHHHHHHHhcc--CChhhHHHHH-------HHHHHHhCCh------------------------h
Q 006494 518 ------NKSRAIKAGIIPSLLKLLED--KALGMVDEAL-------SILQLLASHP------------------------E 558 (643)
Q Consensus 518 ------n~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al-------~iL~nLa~~~------------------------~ 558 (643)
....|+..|+++.+-.+-.. .++++.+..- .....+++.+ +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24566777776655444433 4555544322 2223333222 1
Q ss_pred hHHHHHhc--CcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494 559 GRNEIGRL--SFIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635 (643)
Q Consensus 559 ~~~~i~~~--g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 635 (643)
+...+-+. ..+..|+++|.. .++..-.-|+.=+..++++.|..+..+.+.|+-..+++++.+.++++|..|...++.
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34444443 346889999953 456666677777889999888777777789999999999999999999999998886
Q ss_pred h
Q 006494 636 M 636 (643)
Q Consensus 636 l 636 (643)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=4e-08 Score=103.07 Aligned_cols=229 Identities=17% Similarity=0.164 Sum_probs=163.1
Q ss_pred ChHHHHHHhcC--CCHHHHHHHHHHHHhcccChh-hHHHHHh------cCChHHHHHHHccCCHHHHHHHHHHHHHcccc
Q 006494 404 GIRPLVQLLSY--PDSKIQEHTVTALLNLSLDET-NKRHIAR------EGAIPAIIEILQNGTNEARENSAAALFSLSML 474 (643)
Q Consensus 404 ~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~-~k~~i~~------~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~ 474 (643)
....++.+|+. .+.++....+..+..+..++. ....+.. .....++++++.+++..++..|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 35555566543 478888999999888765543 3333332 23688899988889999999999999999766
Q ss_pred ccccchhhccCChHHHHHHcccC----ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh-----cc--CChhhH
Q 006494 475 DENRVMVGNLNGIPPLVNLLRYG----SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL-----ED--KALGMV 543 (643)
Q Consensus 475 ~~~k~~i~~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL-----~~--~~~~~~ 543 (643)
...+..-...+.++.+++++.+. +......|+.+|.+|...++.|..+.+.|+++.|..+| .+ .+..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 55544443356778888887653 34556889999999999999999999999999999999 22 344678
Q ss_pred HHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhC
Q 006494 544 DEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 544 ~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g 621 (643)
-+++-+++.|+.+++....+...+.|+.|+++++.. .+.+-.-++++|.|++..+.. ....++..|+++.|..+....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 889999999999999999999999999999999874 467778899999999988765 667777888777777776543
Q ss_pred --CHHHHHHHHHH
Q 006494 622 --TNRGQRKANSL 632 (643)
Q Consensus 622 --~~~~k~~A~~l 632 (643)
++...+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 56665544433
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.86 E-value=2e-07 Score=96.42 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHH----HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHHHhcCChHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILI----ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPA 448 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i----~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~ 448 (643)
+..+...+...+...++ ++..|..+ +.+++++.|....+++|.++-+...++|.|.+.+ +++|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 33445555556666663 44444444 4567899999999999999999999999999964 689999999999888
Q ss_pred HHHHHcc----CC---HHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccC--Ch-------------------
Q 006494 449 IIEILQN----GT---NEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYG--SI------------------- 499 (643)
Q Consensus 449 Lv~lL~~----~~---~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~--~~------------------- 499 (643)
++++|+. .+ .+....+.+.|.|-... ++.+.+..+.|+++.|...+.-+ +.
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8888864 11 24445566777776543 44777777777777665554311 00
Q ss_pred -------------------------hhHHHHHHH----------------------HHHh--------------------
Q 006494 500 -------------------------RGKKDAATA----------------------LFNL-------------------- 512 (643)
Q Consensus 500 -------------------------~~k~~A~~a----------------------L~nL-------------------- 512 (643)
+........ +.+|
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~ 293 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI 293 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 000001111 1111
Q ss_pred -------hcCCCchHHHHhcC-cHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-----C
Q 006494 513 -------SINQSNKSRAIKAG-IIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-----G 579 (643)
Q Consensus 513 -------s~~~en~~~iv~~G-~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-----~ 579 (643)
....+.-.++-..| .++.++..+.+.+......+.-+++|++..++.+..+++.|.+..|++.|.. |
T Consensus 294 ~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg 373 (604)
T KOG4500|consen 294 AELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG 373 (604)
T ss_pred hhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 11122222222222 4444555555566677888888999999999999999999999999998853 4
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhccC
Q 006494 580 TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREH 641 (643)
Q Consensus 580 s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~e 641 (643)
+-+.+..++++|.++.---+ ....+..+|+.+.++..+....|++.-+-...||+++..+|
T Consensus 374 nV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 374 NVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred cchhHHHHHHHHHhccccCC-chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 56777888899999987433 45567789999999999999999999999999998887654
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.80 E-value=8.5e-08 Score=100.59 Aligned_cols=220 Identities=23% Similarity=0.259 Sum_probs=161.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh------hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN------NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
.+++.+ +.+.++..-.+..+..+...++.....+.. .....++++++.++|..++..|+..|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 457788888888888888777766655544 2367889999999999999999999999876544433
Q ss_pred HHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-----ccC--ChhhHHHHHH
Q 006494 439 HIAREGAIPAIIEILQN----GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-----RYG--SIRGKKDAAT 507 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~s~--~~~~k~~A~~ 507 (643)
.-...+.++.++..|++ .+.+.+..++.+|.+|...+++|..+.+.|+++.|..++ .++ +......++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33225567888888875 344566889999999999999999999999999999999 222 4678899999
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChh--hHHHHHhcCcHHHHHHHHhc--CChH
Q 006494 508 ALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPE--GRNEIGRLSFIETLVEIIKN--GTPK 582 (643)
Q Consensus 508 aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~--~s~~ 582 (643)
+++.|+.+++....+...+.++.|+++++. ..+.++.-++++|.||..... ....++..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999987 566789999999999999865 78888876666655554433 3454
Q ss_pred HHH
Q 006494 583 NKE 585 (643)
Q Consensus 583 ~ke 585 (643)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 39
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.1e-09 Score=100.06 Aligned_cols=59 Identities=25% Similarity=0.536 Sum_probs=52.6
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCCCcccCCCCCCchhhh
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKTGQILDHLSLAPNYAL 328 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~l~pn~~l 328 (643)
-..|.|-||++.-+|||++.|||-||..||.+|++. +...||+|+..++...++|-+.-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 367999999999999999999999999999999983 33458999999999999997654
No 40
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.70 E-value=1e-08 Score=72.01 Aligned_cols=38 Identities=32% Similarity=0.875 Sum_probs=33.4
Q ss_pred CccCcccccCC-eecCCcccccHHhHHHHHhcCCCCCCCC
Q 006494 275 CPVTLEIMTDP-VIVATGQTYERESIQRWLNSNHKTCPKT 313 (643)
Q Consensus 275 Cpi~~~~m~dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~ 313 (643)
||||.+.+.|| ++++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6899976
No 41
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.1e-08 Score=104.26 Aligned_cols=101 Identities=26% Similarity=0.392 Sum_probs=80.9
Q ss_pred cccHHHHHHHHHHHHHhhccccccccCCchhhhhhhhhcCCCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhc
Q 006494 227 ADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS 305 (643)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~ 305 (643)
+..++.+..+..++.+....+ +.++.+..++|++|..|++..+|+|||++| +|-+.||+.|..++-+
T Consensus 821 ~~~IE~l~~f~nr~E~~r~~e------------a~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls 888 (929)
T COG5113 821 ESQIEELRSFINRLEKVRVIE------------AVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS 888 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------hhhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc
Confidence 345666667777665543211 112224567999999999999999999987 6999999999999997
Q ss_pred CCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494 306 NHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN 340 (643)
Q Consensus 306 ~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~ 340 (643)
..+.|+.|.||...+++||..+|.-|..|....+
T Consensus 889 -d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 889 -DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred -CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 5799999999999999999999999999976543
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.7e-06 Score=86.30 Aligned_cols=230 Identities=23% Similarity=0.282 Sum_probs=168.7
Q ss_pred CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHH
Q 006494 372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAII 450 (643)
Q Consensus 372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv 450 (643)
+.+.+.+..|+..|..+. ++-+|-.-+...|+..+|+..+.+++..+++.|+.+|...+. ++..+..+.+.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 567888999999999999 788999999999999999999999999999999999998774 578888999999999999
Q ss_pred HHHccC-CHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHccc--CChhhHHHHHHHHHHhhcCC-CchHHHHhc
Q 006494 451 EILQNG-TNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRY--GSIRGKKDAATALFNLSINQ-SNKSRAIKA 525 (643)
Q Consensus 451 ~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s--~~~~~k~~A~~aL~nLs~~~-en~~~iv~~ 525 (643)
..|.+. +..++..|..++.+|-.... ....+...++...|..++++ .+...++.++..+..|.... ..+..+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999864 56788889999998876554 56667777889999999988 46788999999999988644 344444456
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH-hc----CcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCH
Q 006494 526 GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG-RL----SFIETLVEIIKN-GTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 526 G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~-~~----g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~ 599 (643)
|....+..+.......+.+.++..+..+...-..+..+. .. ..+......++. .....+..-+.-++..|...+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~ 332 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVP 332 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 666667766666666777888777776666532222221 11 223333333331 122333444455666666555
Q ss_pred HHH
Q 006494 600 YFI 602 (643)
Q Consensus 600 ~~~ 602 (643)
..-
T Consensus 333 ~~~ 335 (342)
T KOG2160|consen 333 SIL 335 (342)
T ss_pred HHH
Confidence 443
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.65 E-value=5.8e-06 Score=98.75 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=53.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 006494 530 SLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG 609 (643)
Q Consensus 530 ~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g 609 (643)
.|+..|.+.+..+...|+.+|..+. ....++.|+.+|.+.+..+|..|+.+|..+- .++ .
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~---------~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP-GDP---------A 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCH---------H
Confidence 3444454444445555555554332 1245677777777777778877777776651 111 2
Q ss_pred cHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 610 VYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 610 ~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
+.+.|...+.+.++.+++.|...|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4667777788888888888887775
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.65 E-value=2.9e-06 Score=101.28 Aligned_cols=230 Identities=15% Similarity=0.076 Sum_probs=141.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
....++.|+..|.+.++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 34577889999999999999999998886641 346778888888888888888888886653110
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-------------ccc----hhhccCChHHHHHHcccCChhh
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-------------NRV----MVGNLNGIPPLVNLLRYGSIRG 501 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------~k~----~i~~~g~i~~Lv~lL~s~~~~~ 501 (643)
...+.+...|.+.++.+|..|+.+|..+...+. .|. .++..+..+.|..++.+.+..+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 112344444555555555555544444321000 000 0000012233444555555555
Q ss_pred HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCCh
Q 006494 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTP 581 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~ 581 (643)
+..++.+|..+... ..+.++.|..++.++++.+...|+..|..+... ...++.+...|.+.++
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAW 821 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCCh
Confidence 55555555544321 112356667777666666777777766665332 1123456667777777
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 582 KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 582 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
.+|..|+.+|..+.. ...++.|..++.+.+..+|..|...|..+
T Consensus 822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777777777765542 23569999999999999999999999775
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.63 E-value=1.1e-08 Score=77.72 Aligned_cols=44 Identities=36% Similarity=0.799 Sum_probs=31.3
Q ss_pred CcccCccCcccccCCeec-CCcccccHHhHHHHHh-cCCCCCCCCC
Q 006494 271 HEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLN-SNHKTCPKTG 314 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~-~~~~~cP~~~ 314 (643)
-.|.||||+..|.|||.- .|||+|+|.+|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999985 8999999999999994 3345699854
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.8e-05 Score=87.65 Aligned_cols=258 Identities=21% Similarity=0.230 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChh-
Q 006494 360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDET- 435 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~- 435 (643)
.++|+.|+..+.+ .-.+.|+.|++.|..+++ .+|..+. +.+.++|+..|..+ |+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4689999988864 466889999999999985 4666655 45788899999764 89999999999999875542
Q ss_pred ------hH------HHH----H-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhc-cCChHHHHHHcc
Q 006494 436 ------NK------RHI----A-REGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGN-LNGIPPLVNLLR 495 (643)
Q Consensus 436 ------~k------~~i----~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~-~g~i~~Lv~lL~ 495 (643)
.+ .+| . ..+.|..++.++...+..+|..+...+.+|-.. .+.+..+.. +-+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 122 2 578999999999999999999999999988533 345555555 779999999999
Q ss_pred cCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcH
Q 006494 496 YGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH-PEGRNEIGRLSFI 569 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i 569 (643)
+....++-+|+..|..|.....+..+++. .+++..|+.++... ..-+++.|+..|.||-.+ ..++.-+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98888899999999999999999999888 89999999999762 234799999999999987 6788888888899
Q ss_pred HHHHHHHhc---CCh--------HH--HHHHHHHHHHhccCC-----HHHH-HHHHHcCcHHHHHHHHhhC
Q 006494 570 ETLVEIIKN---GTP--------KN--KECATSVLLELGLNN-----SYFI-LAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 570 ~~Lv~lL~~---~s~--------~~--ke~A~~~L~~L~~~~-----~~~~-~~~~~~g~i~~L~~ll~~g 621 (643)
|.|.++|.. ++. ++ --.|+.++..+..-+ ...+ ..+...+++..|..++.+.
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 999988853 221 11 123555555555421 1233 3455688999999877554
No 47
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-07 Score=108.54 Aligned_cols=72 Identities=33% Similarity=0.484 Sum_probs=67.8
Q ss_pred CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN 339 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~ 339 (643)
.++|++|..||+..+|+|||++| +|++.||+.|++++.+ ..+.|+||.+|....++||..+|.-|..|..++
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999998 8999999999999997 589999999999999999999999999997654
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.57 E-value=2.6e-08 Score=70.78 Aligned_cols=36 Identities=22% Similarity=0.734 Sum_probs=23.5
Q ss_pred CccCcccccC----CeecCCcccccHHhHHHHHhcC---CCCCC
Q 006494 275 CPVTLEIMTD----PVIVATGQTYERESIQRWLNSN---HKTCP 311 (643)
Q Consensus 275 Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~---~~~cP 311 (643)
||||.+ |.+ |++++|||+||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999954 34577
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.9e-06 Score=87.11 Aligned_cols=183 Identities=21% Similarity=0.241 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHH
Q 006494 415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNL 493 (643)
Q Consensus 415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~l 493 (643)
.+.+-++.|..-|..+..+-+|...+...|++.+++..+++++..+|..|+.++...+.++ ..+..+.+.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 4678888999999998888899999999999999999999999999999999999998655 588999999999999999
Q ss_pred cccC-ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHh-cCc
Q 006494 494 LRYG-SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGR-LSF 568 (643)
Q Consensus 494 L~s~-~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~-~g~ 568 (643)
+.+. +..++..|+.|+.+|.. ++.....+...++...|...|.+ .+..++..++..+..|.........++. .+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9765 56778999999999998 55568888899999999999988 4567788999999999886433333444 466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 569 IETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
...++.+..+.+...+++|+.+++.+...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 67777777778889999999888776653
No 50
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.54 E-value=3e-06 Score=88.46 Aligned_cols=266 Identities=13% Similarity=0.101 Sum_probs=191.5
Q ss_pred hHHHHHHHHHhhcCCCHHH--HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCh-
Q 006494 359 LIEEICSLIQNLSSSQLNI--KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDE- 434 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~- 434 (643)
..+.+..|++++.+.+.+. +.++.+.|..+. ..+|+..++..| ...++.+-+. ..++.+...+.+|.++..+.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 3467888999998877665 788888888775 468999998876 4445444433 35788888999999998765
Q ss_pred hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 435 TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 435 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
+....++..|+++.++.-.+..++....+++-+|.|.+.. ...+..|++..+-..|.-+..+.+.-.+..|+.++.-|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 5677888999999999888888899999999999998743 45788999989999999998888888899999999999
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhccCChh-hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLEDKALG-MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~-~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
+++.+.....-.+|.+..+-.++.+.++. ....+ .....|+ ..+.+..|+.+|.+...+.+.-++.-|
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 99998887777777665544444443332 11111 0001111 124688899999865555554443333
Q ss_pred HHhccC--CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 592 LELGLN--NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 592 ~~L~~~--~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.-+.- .......+-+-|++..|.++..+.+.-+..-|.+.|+.+.+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 222211 11223335567999999999998888888999999999984
No 51
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.53 E-value=3e-08 Score=98.64 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 337 (643)
+.+-++|-||.++|.-||++|||||||.-||.+++.. +..||.|..++....+.-|+.+..+|+.+..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 3466899999999999999999999999999999997 7899999999999999999999999987754
No 52
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.49 E-value=6.2e-07 Score=78.84 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=127.4
Q ss_pred CChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHH
Q 006494 444 GAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA 522 (643)
Q Consensus 444 g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i 522 (643)
+++..|+.-..+ .+.++++...+-|.|++.++-|-..+.+..++...++.|...+...+..++..|+|||..+.|...|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 456667765554 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
.+++++|.++..++++...++..|+..|..|+.. ..-+..+.+..++..+.+.-.+.+.+.+..|-..|-..|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 9999999999999999888999999999999986 456777777666666665554555566655655555444
No 53
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.45 E-value=1.4e-07 Score=67.13 Aligned_cols=39 Identities=36% Similarity=0.945 Sum_probs=36.1
Q ss_pred CccCcccccCCe-ecCCcccccHHhHHHHHh-cCCCCCCCC
Q 006494 275 CPVTLEIMTDPV-IVATGQTYERESIQRWLN-SNHKTCPKT 313 (643)
Q Consensus 275 Cpi~~~~m~dPv-~~~~g~t~~r~~I~~w~~-~~~~~cP~~ 313 (643)
||||.+.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 566779976
No 54
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.43 E-value=9.2e-06 Score=91.60 Aligned_cols=254 Identities=20% Similarity=0.197 Sum_probs=146.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~ 438 (643)
.-.+..+.+.|.++++.++.-|++.+.++. +++.... .++.+.+++.++++.++..|+.++..+.. +++
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--- 147 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--- 147 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---
Confidence 346667777777888888888888887766 3333322 34667777888888888888877777653 222
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc-cccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e 517 (643)
.+... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|.+++...++-.+...+..|..++....
T Consensus 148 ~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 148 LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 11122 577777777777777777777777777 1111111 0 001233444444445566666666666666554332
Q ss_pred chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
....- ...++.+..++.+.++.++-+|+.++..+...+. .-..+++.|+.++.+.++..+..++..|..++..
T Consensus 225 ~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 225 EDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred hhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 22200 3456666666666666666777777776666544 2234566777777766666777777777777765
Q ss_pred CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.+... . .....+..+..+.+..+|.+|..+|..+..
T Consensus 298 ~~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 298 NPPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CHHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cchhh----h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 52211 1 222222223335566666666666665543
No 55
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.40 E-value=2.8e-07 Score=90.75 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=41.4
Q ss_pred CCcccCccCcccccCC--------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 270 PHEFLCPVTLEIMTDP--------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dP--------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
..+..||||++.+.+| ++++|||+||+.||.+|+.. +.+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4568899999987764 56789999999999999986 679999998875
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.38 E-value=2.6e-07 Score=68.77 Aligned_cols=47 Identities=28% Similarity=0.541 Sum_probs=41.1
Q ss_pred CcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
+++.|+||++-..++++.||||. ||..|+.+|+.. ...||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46889999999999999999999 999999999994 689999999875
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.38 E-value=2.5e-06 Score=75.12 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=134.6
Q ss_pred hhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494 481 VGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG 559 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~ 559 (643)
+...+.+..|++-.+.. +.+.|+....-|.|.+.++-|-..+.+..++...+..|..++..+++.+++.|+|+|..+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 44456777888777654 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 560 RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 560 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.+.|.+++++|.++..+.+..+..--.|+..|..||-++......+....++..+.+...+.+-+-+.-|...|....
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999999998877777888999999999988888888877777877777776666777777777776543
No 58
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.1e-07 Score=91.71 Aligned_cols=54 Identities=17% Similarity=0.358 Sum_probs=47.7
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA 323 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~ 323 (643)
.+..+.|-||++-++||--+||||.||.+||..|+.. ...||.||+++.+..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3456999999999999999999999999999999997 46699999998876543
No 59
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.36 E-value=3.9e-05 Score=79.92 Aligned_cols=272 Identities=14% Similarity=0.091 Sum_probs=197.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhH---HHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHH
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNR---ILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
-.+.++.|...++-....+.+.+..++......- ..-.. ...|-..+++ .+.+...-|+++|-.+...++.|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 4566777877787777767777777764332211 11111 2234445544 567788888999999999999999
Q ss_pred HHHhcCChHHHHHHHc-c-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcC
Q 006494 439 HIAREGAIPAIIEILQ-N-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSIN 515 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~-~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~ 515 (643)
.++.++++..++..+. + .+...+.+..-+++.|++++...+.+...+.|+.|++++++. ...+.+-.+.++.|++..
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998899999999984 3 478899999999999999998888887789999999999876 567888899999999986
Q ss_pred CC-------chHHHHhcCcHHHHHHHhcc--CChhhHHHHHHH-------HHHHhCChh---------------------
Q 006494 516 QS-------NKSRAIKAGIIPSLLKLLED--KALGMVDEALSI-------LQLLASHPE--------------------- 558 (643)
Q Consensus 516 ~e-------n~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~i-------L~nLa~~~~--------------------- 558 (643)
.+ ....|+..++.+.+-.+... .++++.+..-.+ ...|++.++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 63 33556666666655444433 344444332222 223333222
Q ss_pred ---hHHHHHhc--CcHHHHHHHHhcCC-hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHH
Q 006494 559 ---GRNEIGRL--SFIETLVEIIKNGT-PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSL 632 (643)
Q Consensus 559 ---~~~~i~~~--g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~l 632 (643)
+...+.+. ..+..|+++|...+ |..-.-|+.=+....++.|+-...+.+.|+-..+++++.+.++++|-.|...
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 33344333 46888999998755 6666777888888888888888888899999999999999999999999888
Q ss_pred HHHhh
Q 006494 633 LQHMS 637 (643)
Q Consensus 633 L~~l~ 637 (643)
++.|-
T Consensus 433 vQ~lm 437 (442)
T KOG2759|consen 433 VQKLM 437 (442)
T ss_pred HHHHH
Confidence 87653
No 60
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00016 Score=72.60 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=181.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
.+..++..|.+.++.++..|+..+..++.. ..+..... .-.++.+..++...++ .+.|+++|.|++.++..+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 356788899999999999999999888854 44444432 3467888899887666 678999999999999998888
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-------cCChHHHHHHcccC-Chh-hHHHHHHHHHH
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-------LNGIPPLVNLLRYG-SIR-GKKDAATALFN 511 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-------~g~i~~Lv~lL~s~-~~~-~k~~A~~aL~n 511 (643)
... .+..++..+.+.........+.+|.||+..+.....+.. .|.+.....+.+.+ +.. --..-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 866 888888888887555556788899999987764333322 23334444444433 322 22345677889
Q ss_pred hhcCCCchHHHHhcCcHHHH-HHHhccCChhhH-HHHHHHHHHHhCChhhHHHHHhc--CcHHHHH--------------
Q 006494 512 LSINQSNKSRAIKAGIIPSL-LKLLEDKALGMV-DEALSILQLLASHPEGRNEIGRL--SFIETLV-------------- 573 (643)
Q Consensus 512 Ls~~~en~~~iv~~G~v~~L-v~lL~~~~~~~~-~~Al~iL~nLa~~~~~~~~i~~~--g~i~~Lv-------------- 573 (643)
|+.....|..+.+...++.= +--+.+.+..+. ...+++|.|.|........+... +.+|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 99998888888776533321 111222233332 34578888988876665555542 2233322
Q ss_pred -------HHHh-----cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhh
Q 006494 574 -------EIIK-----NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 574 -------~lL~-----~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~ 638 (643)
++|. ..++.++..-+.+|..||....++ ..+...|+.+.|-++=... ++.++++...+...+.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR-e~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR-EVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH-HHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2221 256788889999999999865543 4455677777777665443 67888888888887766
No 61
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.30 E-value=5.5e-05 Score=81.33 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=158.8
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhh-----CChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494 360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANN-----GGIRPLVQLLSYPDSKIQEHTVTALLNLSLD 433 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 433 (643)
...+..+++.|+. ..+++..-.+.-+..+...++..-..+.+. ....+++.+|..+|.-++..|...|..|...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3567777777764 455666666777777776665555555543 4667788899999999999999999887532
Q ss_pred -hhhHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHHHH
Q 006494 434 -ETNKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAATAL 509 (643)
Q Consensus 434 -~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL 509 (643)
..+.......-.+..+...|+++ +...+..++.+|..|...+++|..+.+.++++.|+++|+.. +......++.++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 21111111111344556666654 46778888999999999999999999988999999999764 457889999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCCh-------hhHHHHHhcCcHHHHHHHHhc
Q 006494 510 FNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHP-------EGRNEIGRLSFIETLVEIIKN 578 (643)
Q Consensus 510 ~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~-------~~~~~i~~~g~i~~Lv~lL~~ 578 (643)
+-|+.+++....+...|.++.|+++++. ....++.-++++|.||...+ .....++..|. +.++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~ 287 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQ 287 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhc
Confidence 9999988877777789999999999986 55678999999999999853 23345555555 445555543
No 62
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.28 E-value=2.5e-07 Score=70.26 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=33.6
Q ss_pred cccCccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHH
Q 006494 272 EFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLI 332 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI 332 (643)
-.+|++|.++|++||. ..|.|.||+.||.+.+.. .||+|+.|....++.-|..+.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4689999999999996 579999999999886653 499999999999999999998876
No 63
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.25 E-value=5.2e-07 Score=88.11 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC 336 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 336 (643)
..-.+|-||.+.++-|++++||||||.-||..++.. ++.||.|+.+....-+..+..++..++.+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 455799999999999999999999999999999987 689999999988777777777777776664
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.23 E-value=4.8e-05 Score=85.79 Aligned_cols=255 Identities=20% Similarity=0.253 Sum_probs=184.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
.....++.+.+.+...+.-+--.+..+...+++.-.. ++..+.+=|.++++.++..|+++|.++.. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~--- 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAE--- 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhh---
Confidence 4667788888888888777777777777666552222 45668888899999999999999999872 22222
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR 521 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~ 521 (643)
..++.+.+++.++++.+|..|+-++..+...+.. .+... .++.+..+|.+.++.++..|+.++..+ ..++....
T Consensus 114 --~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 114 --PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp --HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 2477888999999999999999999998644222 22222 589999999999999999999999999 11111100
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYF 601 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 601 (643)
-.-...+..|.+++...++-.+..++.+|..++........- ...++.+..++.+.++.+.-.|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 111233444555555677778888899998888763322211 4578888999988888899899999988877544
Q ss_pred HHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 602 ILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 602 ~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
.-..+++.|..++.+.++..+-.|...|..+...
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 2245799999999988999999999999888654
No 65
>PF05536 Neurochondrin: Neurochondrin
Probab=98.22 E-value=2.3e-05 Score=87.75 Aligned_cols=152 Identities=26% Similarity=0.265 Sum_probs=119.5
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccccc----ccchhhccCChHHHHHHcccC-------ChhhHHHHHHHHHHhh
Q 006494 445 AIPAIIEILQNGTNEARENSAAALFSLSMLDE----NRVMVGNLNGIPPLVNLLRYG-------SIRGKKDAATALFNLS 513 (643)
Q Consensus 445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~s~-------~~~~k~~A~~aL~nLs 513 (643)
.++..+.+|+..+.+-|-.+...+-++...++ .+..+.+.=+++.|-.+|+++ ....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46677888888775555555566666654333 244566766678899999874 2455677888899999
Q ss_pred cCCCch--HHHHhcCcHHHHHHHhccCCh-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494 514 INQSNK--SRAIKAGIIPSLLKLLEDKAL-GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSV 590 (643)
Q Consensus 514 ~~~en~--~~iv~~G~v~~Lv~lL~~~~~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~ 590 (643)
..++.. ..++ +-||.|++++...+. .++..|+.+|..++.+++|+..+.+.|+++.|++.+.+ .+...+.|+.+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 977653 4444 479999999988666 89999999999999999999999999999999999987 66789999999
Q ss_pred HHHhccCCH
Q 006494 591 LLELGLNNS 599 (643)
Q Consensus 591 L~~L~~~~~ 599 (643)
|.+++....
T Consensus 163 L~~Lls~~~ 171 (543)
T PF05536_consen 163 LLNLLSRLG 171 (543)
T ss_pred HHHHHHhcc
Confidence 999988644
No 66
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.20 E-value=7.4e-07 Score=64.36 Aligned_cols=40 Identities=30% Similarity=0.744 Sum_probs=33.9
Q ss_pred cCccCccccc---CCeecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494 274 LCPVTLEIMT---DPVIVATGQTYERESIQRWLNSNHKTCPKTG 314 (643)
Q Consensus 274 ~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~ 314 (643)
.||||++-|. .++.++|||.|++.||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999995 4666899999999999999998 47999985
No 67
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.17 E-value=1.6e-06 Score=62.40 Aligned_cols=43 Identities=35% Similarity=0.798 Sum_probs=38.7
Q ss_pred cCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcc
Q 006494 274 LCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQI 316 (643)
Q Consensus 274 ~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~ 316 (643)
.||||++.+.+|+.+. |||.|+..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999998876 999999999999999877889999865
No 68
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.8e-07 Score=81.16 Aligned_cols=54 Identities=20% Similarity=0.514 Sum_probs=45.6
Q ss_pred CcccCccCcccccC--CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 271 HEFLCPVTLEIMTD--PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d--Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
.-|.||||++-++. ||.+.|||.||+.||+.-++. ...||.|+..+.+..+.+-
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRI 185 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheec
Confidence 34999999999986 555789999999999999997 4789999998887766543
No 69
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.8e-06 Score=90.51 Aligned_cols=68 Identities=26% Similarity=0.530 Sum_probs=58.5
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN 339 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~ 339 (643)
..+++.||||++.+.+|++++|||+||+.||..|+. +...||.|+. . ...+.+|..+..++......+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcC
Confidence 458899999999999999999999999999999999 6678999996 2 227779999999888876543
No 70
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.09 E-value=0.00051 Score=75.31 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHH
Q 006494 457 TNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKL 534 (643)
Q Consensus 457 ~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~l 534 (643)
+...+..|+-.+.+++. .+..+..+....++.+|++++..+...++..++.+|.||.. ..+-+.++++.|+|..|.++
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 34444333334444442 33345555567799999999988899999999999999997 66669999999999999999
Q ss_pred hccCChhhHHHHHHHHHHHhCChhh--HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHH
Q 006494 535 LEDKALGMVDEALSILQLLASHPEG--RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILA 604 (643)
Q Consensus 535 L~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 604 (643)
+.+.+..+...++++|.++..+.+. +....+.-....++.+..+....++|.+...|.|+..+..+....
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 9998888999999999999998543 333333334566788888899999999999999998886544433
No 71
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.06 E-value=3.4e-06 Score=58.53 Aligned_cols=39 Identities=44% Similarity=1.008 Sum_probs=35.9
Q ss_pred CccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCC
Q 006494 275 CPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKT 313 (643)
Q Consensus 275 Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~ 313 (643)
||||++..++|++++|||.|+..|+.+|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999666789975
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00026 Score=79.41 Aligned_cols=231 Identities=18% Similarity=0.192 Sum_probs=163.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh---HHHHHhhCChHHHHHHhcCC-------CHHHHHHHHHHHHhc
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN---RILIANNGGIRPLVQLLSYP-------DSKIQEHTVTALLNL 430 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nL 430 (643)
..+...++.|++.+.+.+..++--+..+.+.++.. ++.+.++=+.++|-++|.++ ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56888899999988888899999999998876643 44577877789999999873 345567789999999
Q ss_pred ccChhhHH--HHHhcCChHHHHHHHccCCH-HHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHH
Q 006494 431 SLDETNKR--HIAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT 507 (643)
Q Consensus 431 s~~~~~k~--~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~ 507 (643)
+.+++... .++. -||.|++++.+++. ++...+..+|..++..++.+..+.+.|+++.|+..+.+ .......|+.
T Consensus 85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 98776653 4443 59999999988766 88999999999999999999999999999999999988 5567889999
Q ss_pred HHHHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHHHhcCc----HHHHHHHHh
Q 006494 508 ALFNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG--RNEIGRLSF----IETLVEIIK 577 (643)
Q Consensus 508 aL~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~----i~~Lv~lL~ 577 (643)
++.+++...+....--. ..+++.|-+.+........-.++..|..+-...+. ......... ...|..+|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99998875442111111 13445555555444444556677888777666421 112222233 344455565
Q ss_pred c-CChHHHHHHHHHHHHh
Q 006494 578 N-GTPKNKECATSVLLEL 594 (643)
Q Consensus 578 ~-~s~~~ke~A~~~L~~L 594 (643)
+ .++..|..|+.+...|
T Consensus 242 sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASL 259 (543)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 5 3456666655544443
No 73
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0011 Score=69.56 Aligned_cols=237 Identities=14% Similarity=0.094 Sum_probs=177.9
Q ss_pred HHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh------hh----HHHHHhcCChHHHH
Q 006494 381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE------TN----KRHIAREGAIPAII 450 (643)
Q Consensus 381 Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~----k~~i~~~g~i~~Lv 450 (643)
.+..+..++ .-|+.-..+++.++++.|+.+|.+.+.++....+..|..|...+ +. -..+++.+.++.|+
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 445566666 56777888899999999999999999999999999998887322 22 23555788999998
Q ss_pred HHHccCC------HHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccC--ChhhHHHHHHHHHHhhc-CCCchH
Q 006494 451 EILQNGT------NEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAATALFNLSI-NQSNKS 520 (643)
Q Consensus 451 ~lL~~~~------~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL~nLs~-~~en~~ 520 (643)
.-+..-+ ....+++.+.+-|+.. .++....+++.|.+..|+.-+... -...+..|..+|.-+.. ..+|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8776422 2345677777788764 455777888888888888755433 45677888888887776 445888
Q ss_pred HHHhcCcHHHHHHHhcc---C------ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 521 RAIKAGIIPSLLKLLED---K------ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~---~------~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
......++..|++-+.- . ..++.+....+|+.+...+.++..++...++....-+++. ....+..|+.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 88888999999887742 2 2356777888999999999999999998888877666665 456677899999
Q ss_pred HHhccCCH--HHHHHHHHcCcHHHHHHHHh
Q 006494 592 LELGLNNS--YFILAALQYGVYEHLVEITR 619 (643)
Q Consensus 592 ~~L~~~~~--~~~~~~~~~g~i~~L~~ll~ 619 (643)
-....+.+ .+|...++.++...++.+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 98888766 67888888776666665433
No 74
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00011 Score=82.17 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=124.1
Q ss_pred cCChHHHHHHcccC-ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhH
Q 006494 484 LNGIPPLVNLLRYG-SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 484 ~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
.-.+|.|+.+|+.+ +.+....|++||++||. .|+....+|+.++||.|++-|.. ..-++.|.++.+|..++....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 45789999999876 78999999999999996 89999999999999999988865 667899999999999998532
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.+|..+|++...+.+|.=-+..+|..|+++-.|.|..-. +.-..++ .++|.|..++...+.+.-+.+.-.+..+-
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 467889999999999988888999999999999998622 2122222 47999999999999888877777665553
No 75
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.99 E-value=0.00011 Score=80.34 Aligned_cols=204 Identities=14% Similarity=0.048 Sum_probs=143.9
Q ss_pred hHHHHHhcCChHHHHHHHcc------CCHHHHHHHHHHHHHcccc-----ccccchhhccCChHHHHHHcccCChhhHHH
Q 006494 436 NKRHIAREGAIPAIIEILQN------GTNEARENSAAALFSLSML-----DENRVMVGNLNGIPPLVNLLRYGSIRGKKD 504 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~------~~~~~~~~Aa~~L~~Ls~~-----~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~ 504 (643)
+.....+...++.+++++.. +.++.+..++.-...+... -.++..+-+.-....+.......+......
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa 396 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA 396 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence 33333355667777777753 3444443333322222211 123344444334444444445557778888
Q ss_pred HHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChH
Q 006494 505 AATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPK 582 (643)
Q Consensus 505 A~~aL~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~ 582 (643)
|+.++.+++..-.. +..+-...+..+|++++.++...+...++++|+|++.. ..-+..+.+.|+|..+.+++.+..+.
T Consensus 397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n 476 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN 476 (678)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch
Confidence 88888888753221 22244577899999999888888999999999999997 78899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-cHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 583 NKECATSVLLELGLNNSYFILAALQYG-VYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 583 ~ke~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
.+.+++++|.++.-+..+..+...... ....|..+..+.+..+++.+..+||+|...
T Consensus 477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999988766554433332 356677888999999999999999998643
No 76
>PTZ00429 beta-adaptin; Provisional
Probab=97.97 E-value=0.0034 Score=72.64 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=168.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
..+..++.+.+.+.+.+.-..-.+.+.++.+++.-.. ++..+.+=+.++++.++..|+++|.++-..+ ++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~ 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH
Confidence 5667777888888877776666677777655543222 4567888888999999999999998864321 11
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR 521 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~ 521 (643)
+ -.++++.+.|.+.++-+|..|+-++..+-..+. ..+...|.++.|..+|.+.++.+..+|+.+|..+....+..-.
T Consensus 139 e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 139 E-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 1 145667777888899999999999999854332 3344567889999999999999999999999999865443322
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-HH
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN-SY 600 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~ 600 (643)
...+.+..|+..|.+-++-.+-..+.+|.... +...... ...+..+...|++.++.+.-.|+.+++.+.... +.
T Consensus 216 -l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 216 -SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred -HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 23455666777776544434445555553321 2222211 246777777788888888888888888887542 22
Q ss_pred HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 601 FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 601 ~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
....+. ..+.++|+.| .++.+.++-.+..-|..+.
T Consensus 291 ~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 291 LIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 211111 1233555555 3456667766666555543
No 77
>PHA02926 zinc finger-like protein; Provisional
Probab=97.95 E-value=5.9e-06 Score=78.67 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=44.4
Q ss_pred CCCCcccCccCcccccC---------CeecCCcccccHHhHHHHHhcC-----CCCCCCCCcccCCCCCCchh
Q 006494 268 LVPHEFLCPVTLEIMTD---------PVIVATGQTYERESIQRWLNSN-----HKTCPKTGQILDHLSLAPNY 326 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~d---------Pv~~~~g~t~~r~~I~~w~~~~-----~~~cP~~~~~l~~~~l~pn~ 326 (643)
....+..|+||++...+ +++.+|||+||..||.+|.... ...||.||..+. .++|..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr 236 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK 236 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence 34577899999998754 4677999999999999999853 245999999876 355543
No 78
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0017 Score=75.68 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=169.3
Q ss_pred HHHHHHHHhh----cCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC
Q 006494 361 EEICSLIQNL----SSSQLNIKRDSVMKIRMLSKENPDN-RILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD 433 (643)
Q Consensus 361 ~~i~~Lv~~L----~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~ 433 (643)
..+|.++..+ ..++.+....++..+-.++...+.. +..+. ..|..-..+.++. +..++..|+..|..++..
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 3455455444 4566666677777777777544433 32322 2445555555544 678899999999888866
Q ss_pred hhhHHHHH---hcCChHHHHHHHccCCHH----------------HHHHHHHHHHHccccccccchhhccCChHHHHHHc
Q 006494 434 ETNKRHIA---REGAIPAIIEILQNGTNE----------------ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL 494 (643)
Q Consensus 434 ~~~k~~i~---~~g~i~~Lv~lL~~~~~~----------------~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL 494 (643)
...+.... -.-.++.++.++.....+ -...|..+|-.|+..=..+. +-+-.++.+-.++
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAML 357 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHh
Confidence 32222211 122444555555321110 12334555555543221111 1122445555667
Q ss_pred ccCChhhHHHHHHHHHHhhcCCCchHHHHh---cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcH
Q 006494 495 RYGSIRGKKDAATALFNLSINQSNKSRAIK---AGIIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFI 569 (643)
Q Consensus 495 ~s~~~~~k~~A~~aL~nLs~~~en~~~iv~---~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i 569 (643)
++.+..-++.|+.+|..++. .+.+.+. ..+++.++..|.++++.++-.|+.++..++.+ ++...... .-.+
T Consensus 358 ~S~~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~-e~l~ 433 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH-ERLP 433 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH-Hhcc
Confidence 88899999999888887764 3332222 45777788888889999999999999999997 45444443 3467
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH-HHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 570 ETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYE-HLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 570 ~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~-~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
+.|+..+.+ ++++++.+|+.+|.++....+.....=.=.+++. .|..+.+++++.+++.|+..|--..
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 788888876 6789999999999998876554332222235666 6666788999999999998886553
No 79
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.9e-06 Score=85.75 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=60.7
Q ss_pred CCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCC-CCCCchhhhHHHHHHHHh
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~ 337 (643)
.+--+|.||||+++++..++++ |+|.||+.||-+-+..|+..||.|++.+.. ..|.++..+..+|.+...
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 3457899999999999999885 999999999999999999999999999874 568888888888877653
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=97.88 E-value=0.0037 Score=72.34 Aligned_cols=253 Identities=13% Similarity=0.066 Sum_probs=165.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
++.+..|-..|.+.+...+..|++.+-.+...+.+.-. ..+.+++++.+.|.+.+.-..-.|.+.+........
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 34566677778888888888888765433322322222 345577888899999988888888887653322222
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
+ ++..+.+=+.+.++.+|..|..++.++-..+- . .-.+.++.+.+.+.++-+++.|+.++..+-...+
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i-----~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSV-----L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHH-----H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 2 35566677778899999999998888743111 1 1244667777888899999999999999875333
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
..+.+.|.++.|.++|.+.++.++-.|+.+|..+.......-.+ ..+.+..|+..+...++..|-..+.+|....-.+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc
Confidence 23446788999999999999999999999999998653222222 23556777787877788888766666644221111
Q ss_pred HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
... ..++..+...+++.++-+.-.|.+++-.+
T Consensus 252 ~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 252 ESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred HHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 111 12444555555555555555555544433
No 81
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0014 Score=73.23 Aligned_cols=248 Identities=19% Similarity=0.155 Sum_probs=189.5
Q ss_pred HHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhCh------hhH-----------HHHHhhCChHHHHHHhcCCCHHHH
Q 006494 360 IEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENP------DNR-----------ILIANNGGIRPLVQLLSYPDSKIQ 420 (643)
Q Consensus 360 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~~~g~i~~Lv~lL~~~~~~~~ 420 (643)
..+++.|++.|.. .|++...-++..+..+..+++ ..+ ..|...+.|..|+..+...|..++
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 4577888888874 477888888898888876653 112 123346889999999999999999
Q ss_pred HHHHHHHHhccc--ChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHccc
Q 006494 421 EHTVTALLNLSL--DETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRY 496 (643)
Q Consensus 421 ~~a~~~L~nLs~--~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s 496 (643)
..++..|.+|-. ..+.+..+. ..-+|..++.+|.+....+|..+.-.|..|+.+...-.+++. .+++..|.+++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999998754 345666555 778999999999998888999999999999988777666666 7899999999965
Q ss_pred C----ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc---CCh----------hhHHHHHHHHHHHhCC--
Q 006494 497 G----SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED---KAL----------GMVDEALSILQLLASH-- 556 (643)
Q Consensus 497 ~----~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~---~~~----------~~~~~Al~iL~nLa~~-- 556 (643)
. ..-+..+++..|.||.. +..|...+.+.+.||.|..+|.. ++. ..+..|+.++..|+.-
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 12467899999999987 66788999999999999988854 221 1245578888888763
Q ss_pred -----hhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494 557 -----PEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLELGLNNSYFILAALQ 607 (643)
Q Consensus 557 -----~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~~~ 607 (643)
..++.++.+.+.+..|..++.+. ..+++..+.-++....+++......+.+
T Consensus 300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 12455777788999999988664 3567777888888888887766655544
No 82
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=2.1e-05 Score=79.84 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=43.0
Q ss_pred CcccCccCccc-ccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494 271 HEFLCPVTLEI-MTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 271 ~~f~Cpi~~~~-m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 324 (643)
++..||+|..- ...|- +-+|||+||++||..+|..|...||.|+.++....+.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45789999872 33443 23799999999999999888889999999998777444
No 83
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0071 Score=63.69 Aligned_cols=238 Identities=19% Similarity=0.214 Sum_probs=172.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-----hh----HHHHHhhCChHHHHHHhcCCC------HHHHHHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-----DN----RILIANNGGIRPLVQLLSYPD------SKIQEHT 423 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----~~----r~~i~~~g~i~~Lv~lL~~~~------~~~~~~a 423 (643)
+-++++.|+++|.+.+.++....+.-++.|+..+. +. -..+++.+.++.|+.-+..-| .....++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 45689999999999999999999999998885432 21 233466788888888776533 3345677
Q ss_pred HHHHHhcc-cChhhHHHHHhcCChHHHHHHHccC-C-HHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcc---c
Q 006494 424 VTALLNLS-LDETNKRHIAREGAIPAIIEILQNG-T-NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLR---Y 496 (643)
Q Consensus 424 ~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~-~-~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~---s 496 (643)
...+.|+. ..+.....+++.|.+..|+.-+... . ..-+..|.-+|.-+-.+. +++...+...++..|+.-+. .
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 88888886 5677888888889999988876543 2 334556666666665444 48889999999998887763 2
Q ss_pred CC------hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHHHhcC
Q 006494 497 GS------IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE---GRNEIGRLS 567 (643)
Q Consensus 497 ~~------~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~---~~~~i~~~g 567 (643)
.+ .+...+-..+|+.+...++|+.+++...+++...-+++. .....-.++.+|-....+++ ++..+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 22 244566677788888899999999998888877767765 33456678999998888755 677788888
Q ss_pred cHHHHHHHHh---------cCC-hHHHHHHHHHHHHhccC
Q 006494 568 FIETLVEIIK---------NGT-PKNKECATSVLLELGLN 597 (643)
Q Consensus 568 ~i~~Lv~lL~---------~~s-~~~ke~A~~~L~~L~~~ 597 (643)
++..+..+.. ..+ ...-++.+.+|+++-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 8888777654 223 34457788888887654
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.82 E-value=0.0024 Score=69.10 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=34.5
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+++.|..+++.. .++..++.+|..+.. ..+++.|+..+.+. ..++.|.+.++.+..
T Consensus 241 a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 455555555442 255666666554433 34677777777643 488888888887754
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.82 E-value=0.0051 Score=65.73 Aligned_cols=271 Identities=16% Similarity=0.160 Sum_probs=177.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC--HHHHHHHHHHHHhcccChhhHHHH
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD--SKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
.+.+...+-+.+.+++..+.+.+|.+. .+...-..+.+.+.--.++..|..++ ..-+++|+..+..+....++...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 334443444556888888999999887 46666667777676667777776543 33466888877765533222222
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~ 520 (643)
...|.+..++.+....++..+..+..+|..|+.. +...+...|++..|++.+-++........+.++..+..++..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 2567888999999888889999999999999863 34456778999999999988876777778889999998888888
Q ss_pred HHHhcCcHHHHHHHhccC-------Ch--hhHHHHHHHHHHHhCChhhHHHHHhc--CcHHHHHHHHhcCChHHHHHHHH
Q 006494 521 RAIKAGIIPSLLKLLEDK-------AL--GMVDEALSILQLLASHPEGRNEIGRL--SFIETLVEIIKNGTPKNKECATS 589 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~-------~~--~~~~~Al~iL~nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~ 589 (643)
.+...--+..++.-+.+. +. +....+..++..+-.+-.|--.+... .++..|+..|.-.+++.|+..+.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 766544455555554432 11 22333333343333332222222222 35666666666666666666665
Q ss_pred HHHHhccCC----------------H--------------------------------HH----HHHHHHcCcHHHHHHH
Q 006494 590 VLLELGLNN----------------S--------------------------------YF----ILAALQYGVYEHLVEI 617 (643)
Q Consensus 590 ~L~~L~~~~----------------~--------------------------------~~----~~~~~~~g~i~~L~~l 617 (643)
+|..+-.-. + .+ .....+.|.++.|+++
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 555443210 0 01 1224579999999999
Q ss_pred HhhC-CHHHHHHHHHHHHHhh
Q 006494 618 TRCG-TNRGQRKANSLLQHMS 637 (643)
Q Consensus 618 l~~g-~~~~k~~A~~lL~~l~ 637 (643)
+.+. ++..++||.-+|..+-
T Consensus 343 i~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 9887 7888999999988653
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.73 E-value=0.0047 Score=66.01 Aligned_cols=252 Identities=15% Similarity=0.110 Sum_probs=172.7
Q ss_pred HHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC--CHHHH
Q 006494 384 KIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG--TNEAR 461 (643)
Q Consensus 384 ~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~ 461 (643)
.+..+.+.++..|..+.-....+.+..++-+++.+++..+.+++..+..++..-..+.+.+.--.++.-|... +..-|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3444445566555555444444555544444458999999999999999988888888777666666777543 46678
Q ss_pred HHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChh
Q 006494 462 ENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG 541 (643)
Q Consensus 462 ~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~ 541 (643)
++|...+..+......... ...|.+..++.+..+.+++.+..|+.+|..|+.. +-..++.+|++..|++.+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHh
Confidence 8999988887654433222 2467889999999998899999999999999874 345566899999999999886666
Q ss_pred hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-------Ch--HHHHHHHHHHHHhccCCHHHHHHHHH-cCcH
Q 006494 542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-------TP--KNKECATSVLLELGLNNSYFILAALQ-YGVY 611 (643)
Q Consensus 542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i 611 (643)
..+..+.++..+-.+|..|..+...--+..+..-+.+. +. .--..+..++..+-+.=++......+ ...+
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88889999999999999998776533344443333221 11 11223444444444433332222222 2568
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 612 EHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 612 ~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
..|+..+...++++++....++--+-+
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 889999988899999888888776654
No 87
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=77.41 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHH-HHhcCCCCCCCCCcccCCCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQR-WLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~-w~~~~~~~cP~~~~~l~~~~ 321 (643)
-.+|.|+||.+.+.+|+-++|||.||-+||-. |-......||.||+......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 37899999999999999999999999999999 88876677999998765443
No 88
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00098 Score=74.80 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=49.9
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
+-.+||.|..-.+|-||+.|||.||-.||+..+....+.||.|+..+...++.|-
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 4578999999999999999999999999999999888999999999987776654
No 89
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.007 Score=70.67 Aligned_cols=260 Identities=17% Similarity=0.214 Sum_probs=177.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc------cC
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS------LD 433 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs------~~ 433 (643)
..+..|++.|.+.|.+++..|-+.+..+++..+ ..+.|..++.. .|++++.-|+-.++.|. .+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~ 73 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS 73 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC
Confidence 467788999999999999999999998885432 56778888865 47888877776666653 34
Q ss_pred hhhHHHHHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 434 ETNKRHIAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 434 ~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
.+.+.+|... |+.. .+...+.+|..-+.++..++...--- ...+.++.|++..++.++..++.|+.+|+++
T Consensus 74 ~e~~~siks~-----lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 74 AEVQQSIKSS-----LLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSL 145 (1075)
T ss_pred HHHHHHHHHH-----HHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence 5666666432 3333 34556778888888888887543221 5578889999999999999999999999999
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHh-cCcHHHHHHHHh----cCChHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGR-LSFIETLVEIIK----NGTPKNKEC 586 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~-~g~i~~Lv~lL~----~~s~~~ke~ 586 (643)
...-++...=-=....+.+.+.+.+++..++-.|+.++...+...+ .....-. ...+|.++..+. .++.+.-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8755443221111234455555666555588888888887776542 2222222 245666666554 455555667
Q ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhhc
Q 006494 587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~~ 639 (643)
++.+|..+....+......+. .++..-..+..+. ++.+|..|.++|-.+.++
T Consensus 226 ~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 226 ALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 788888888887776554433 3555666666555 678899999888877664
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.67 E-value=4.3e-05 Score=61.59 Aligned_cols=39 Identities=31% Similarity=0.694 Sum_probs=32.0
Q ss_pred CccCcccccCC-------------eecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494 275 CPVTLEIMTDP-------------VIVATGQTYERESIQRWLNSNHKTCPKTG 314 (643)
Q Consensus 275 Cpi~~~~m~dP-------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~ 314 (643)
|+||++-+.|| +..+|||.|...||.+|+.. +.+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999544 33579999999999999987 45999996
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.66 E-value=7.1e-05 Score=77.68 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=46.5
Q ss_pred ccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 273 FLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
+.|.|++++-.+||+-+ +||.|+|+-|++++.. +.+||+|+++|..++++|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 46999999999999975 9999999999999998 5799999999998777654
No 92
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.9e-05 Score=81.67 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=58.3
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcC----CCCCCCCCcccCCCCCCch----hhhHHHHHHHHhhcccc
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN----HKTCPKTGQILDHLSLAPN----YALRNLIVQWCEKNNVE 342 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~----~~~cP~~~~~l~~~~l~pn----~~lr~lI~~w~~~~~~~ 342 (643)
.+..||||++--.=|+.+.|||.||-.||-++|..+ ...||+|+..+...++.|- ..-+.-+...+..||.+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~~ 264 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGIP 264 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCCC
Confidence 388999999999999999999999999999999854 4569999999887777663 33344467777778843
No 93
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.66 E-value=3.5e-05 Score=55.51 Aligned_cols=41 Identities=15% Similarity=0.446 Sum_probs=35.0
Q ss_pred cCccCcccc---cCCeecCCcccccHHhHHHHHhcCCCCCCCCCc
Q 006494 274 LCPVTLEIM---TDPVIVATGQTYERESIQRWLNSNHKTCPKTGQ 315 (643)
Q Consensus 274 ~Cpi~~~~m---~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~ 315 (643)
.||+|.+.+ ..|++++|||+||..|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999888 358889999999999999999 44678999974
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.64 E-value=0.0022 Score=67.20 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHH
Q 006494 373 SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAII 450 (643)
Q Consensus 373 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv 450 (643)
.+.+-..-+++.|..+.+ -++.|..++.++++..++..+.+ .+..+|.+.+-+++-|+.++...+.+..-+.|+.|.
T Consensus 169 ~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~ 247 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS 247 (442)
T ss_pred CCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence 566677788889998884 57899999999999999998843 378899999999999999998888887788999999
Q ss_pred HHHccCC-HHHHHHHHHHHHHcccccc---ccc----hhhccCChHHHHHHcccC---ChhhHHHH-------HHHHHHh
Q 006494 451 EILQNGT-NEARENSAAALFSLSMLDE---NRV----MVGNLNGIPPLVNLLRYG---SIRGKKDA-------ATALFNL 512 (643)
Q Consensus 451 ~lL~~~~-~~~~~~Aa~~L~~Ls~~~~---~k~----~i~~~g~i~~Lv~lL~s~---~~~~k~~A-------~~aL~nL 512 (643)
++++... ..+-....+++.|+..... .+. .+.. +.++.-++.|..+ +++...+- -.-...|
T Consensus 248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~L 326 (442)
T KOG2759|consen 248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDL 326 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9998753 4455567888888864331 222 3333 4445555555433 22222111 1112223
Q ss_pred hcC---------------C---------CchHHHHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHH
Q 006494 513 SIN---------------Q---------SNKSRAIK--AGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIG 564 (643)
Q Consensus 513 s~~---------------~---------en~~~iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~ 564 (643)
|+. | +|..++-+ -..+..|+.+|.. .++.+.--|+.=+.....+ |+|+..+.
T Consensus 327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~ 406 (442)
T KOG2759|consen 327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVE 406 (442)
T ss_pred ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHH
Confidence 332 2 23344444 3478889999976 4466666677777777776 99999999
Q ss_pred hcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 565 RLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
..|+=..++++|...++++|-+|+.++-.|-.
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999998876654
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0044 Score=62.52 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=156.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
+...++.+.++++...+ ...|+..+.+++ .++..|+.+... .+..++..+..+.+..-...+.+|.||+.++....
T Consensus 42 ~~~~lk~l~qL~~~~~~--~~~a~~alVnls-q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~ 117 (353)
T KOG2973|consen 42 SEALLKDLTQLLKDLDP--AEPAATALVNLS-QKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVA 117 (353)
T ss_pred hhhhHHHHHHHccCccc--ccHHHHHHHHHH-hhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHH
Confidence 45677778888876555 566788899998 567777777665 77888888877767777888999999998876655
Q ss_pred HHH---h----cCChHHHHHHHccC-CH-HHHHHHHHHHHHccccccccchhhccCCh--HHHHHHcccCChhhH-HHHH
Q 006494 439 HIA---R----EGAIPAIIEILQNG-TN-EARENSAAALFSLSMLDENRVMVGNLNGI--PPLVNLLRYGSIRGK-KDAA 506 (643)
Q Consensus 439 ~i~---~----~g~i~~Lv~lL~~~-~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~s~~~~~k-~~A~ 506 (643)
.+. . .|.+.....+...+ +. .--..-|.++.+|+.....|..+.....+ ..|+.+ .+.+..++ ...+
T Consensus 118 ~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gva 196 (353)
T KOG2973|consen 118 ALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVA 196 (353)
T ss_pred HHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchH
Confidence 443 2 44555555555443 21 23456788889999999998888886633 233333 33333343 4567
Q ss_pred HHHHHhhcCCCchHHHHhc--CcHHHH---------------------HHHhcc-----CChhhHHHHHHHHHHHhCChh
Q 006494 507 TALFNLSINQSNKSRAIKA--GIIPSL---------------------LKLLED-----KALGMVDEALSILQLLASHPE 558 (643)
Q Consensus 507 ~aL~nLs~~~en~~~iv~~--G~v~~L---------------------v~lL~~-----~~~~~~~~Al~iL~nLa~~~~ 558 (643)
.+|.|.|....++..++.. ..+|.| +++|.. +++.+...-+.+|..||....
T Consensus 197 gtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~ 276 (353)
T KOG2973|consen 197 GTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA 276 (353)
T ss_pred HHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence 8999999988888777652 234443 344431 345677778999999999999
Q ss_pred hHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhcc
Q 006494 559 GRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGL 596 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~ 596 (643)
||+.+.+.|+-+. ++-++. .+++.++.+-.+.-.|-.
T Consensus 277 GRe~lR~kgvYpi-lRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 277 GREVLRSKGVYPI-LRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hHHHHHhcCchHH-HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 9999988765554 455554 345555555555444444
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.59 E-value=9.4e-05 Score=52.37 Aligned_cols=40 Identities=50% Similarity=0.761 Sum_probs=37.8
Q ss_pred ChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 392 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
+++++..+.+.|+++.|+.+|++.+.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999986
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0092 Score=68.46 Aligned_cols=256 Identities=16% Similarity=0.185 Sum_probs=168.6
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 362 EICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 362 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..+.++..|. .+++.++.-|+..+..++ .+.+.-..+++.|.+..|+.+|.+ -+..++.++.+|..|+.+.+....-
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3344444443 356677777888777766 444555556778888888998877 4888999999999999998887777
Q ss_pred HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHcccccc--ccchh--hc----------cCChHHHHHHccc---------
Q 006494 441 AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDE--NRVMV--GN----------LNGIPPLVNLLRY--------- 496 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~--~k~~i--~~----------~g~i~~Lv~lL~s--------- 496 (643)
.+.|++.-|..++-. .++..|.+||..+..|..+.- -|..| .. .+.-.+.++++..
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence 788999888888865 467888888888887753321 11111 00 0111222222210
Q ss_pred --------------------------------------------------------------------------------
Q 006494 497 -------------------------------------------------------------------------------- 496 (643)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (643)
T Consensus 1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence
Q ss_pred -----CCh--hhHHHHHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494 497 -----GSI--RGKKDAATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF 568 (643)
Q Consensus 497 -----~~~--~~k~~A~~aL~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~ 568 (643)
.++ .....-..|+..|.+.+++ ...+-..|.+|.++..+...+...-..|+.+|..|+.+.-+..+++...+
T Consensus 2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence 000 0000111122233332222 33444578888888888766666667899999999999999999999888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhh
Q 006494 569 IETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~ 620 (643)
+..++..++..- ..-..|+.+|..+...+. +.....++.|.+|.|+.++..
T Consensus 2090 i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2090 IDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred chhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 888888887533 333478888888776543 444557789999999999874
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.54 E-value=9e-05 Score=52.48 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
++++..+++.|++|+|+++|.+.+..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5688999999999999999999999999999999999974
No 99
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.53 E-value=0.00095 Score=70.24 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=143.4
Q ss_pred hHHHHHhhCChHHHHHHhcCCCHHH--HHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHc
Q 006494 395 NRILIANNGGIRPLVQLLSYPDSKI--QEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSL 471 (643)
Q Consensus 395 ~r~~i~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~L 471 (643)
....+...|++..|++++..++.++ +..|...|.. ....+|+..++..| +..++.+-+. ..++.....+++|.++
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq-~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQ-ILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHH-HHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3556677899999999999987766 5667777765 34567888888776 6666666654 4677777889999988
Q ss_pred cc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC--CchHHHHhcCcHHHHHHHhccCChhhHHHHHH
Q 006494 472 SM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ--SNKSRAIKAGIIPSLLKLLEDKALGMVDEALS 548 (643)
Q Consensus 472 s~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~--en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~ 548 (643)
-. .++....+++.|++..++-..+..++...++++.+|.|.+.+. +.+.+|++..+..-|+-+-.+.+.-+.-.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 54 4457888999999999988888888999999999999988754 45889999999888988887777777888999
Q ss_pred HHHHHhCChhhHHHHHhcCcHHHHHHHHhc
Q 006494 549 ILQLLASHPEGRNEIGRLSFIETLVEIIKN 578 (643)
Q Consensus 549 iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 578 (643)
+.+.|+.+.+.-..+...|.+..+-.++.+
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 999999998877777777766555555544
No 100
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0017 Score=69.56 Aligned_cols=258 Identities=17% Similarity=0.183 Sum_probs=179.0
Q ss_pred HHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHHHhcCChHHHHHHHccCCH
Q 006494 380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTN 458 (643)
Q Consensus 380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~ 458 (643)
.++..|..+++.-...|.-+.++..++.|+.+|+.++..+.--+...++|+... +.-+..+...|+|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 345667777766566677888889999999999987666666677788887644 5567778899999999999998888
Q ss_pred HHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CC---chHHHHhcC----cH
Q 006494 459 EARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QS---NKSRAIKAG----II 528 (643)
Q Consensus 459 ~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~e---n~~~iv~~G----~v 528 (643)
..|.++.+++..+....++ +-+....-++..++++..+..-.++...+-.|.|+..+ .. .+.-++.+. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999876654 44555667889999999988889999999999998752 22 233222222 34
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH-Hhc-CcHHHHHHHHhc---------CC-------h---------
Q 006494 529 PSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI-GRL-SFIETLVEIIKN---------GT-------P--------- 581 (643)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i-~~~-g~i~~Lv~lL~~---------~s-------~--------- 581 (643)
..|++.+...++-..+..+.+|.+++...+....+ .+. ..+..+.++|.. |+ |
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 44556666667766777788888888775544443 332 344444444420 00 0
Q ss_pred -------------------------HHHHHH---HHHHHHhc---------cCCHHHHHHHHHcCcHHHHHHHHhhCCHH
Q 006494 582 -------------------------KNKECA---TSVLLELG---------LNNSYFILAALQYGVYEHLVEITRCGTNR 624 (643)
Q Consensus 582 -------------------------~~ke~A---~~~L~~L~---------~~~~~~~~~~~~~g~i~~L~~ll~~g~~~ 624 (643)
+.-|-. .++..++. ....++++.+.+.|.-..|+.+....++.
T Consensus 648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~ 727 (743)
T COG5369 648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI 727 (743)
T ss_pred ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence 000111 11111111 01126777788899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 006494 625 GQRKANSLLQHMS 637 (643)
Q Consensus 625 ~k~~A~~lL~~l~ 637 (643)
+++++..+|.+|+
T Consensus 728 vrek~~taL~~l~ 740 (743)
T COG5369 728 VREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 101
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.50 E-value=0.0097 Score=65.45 Aligned_cols=256 Identities=15% Similarity=0.178 Sum_probs=166.4
Q ss_pred HHHHHHhhhhChhhHHHHHhhCChHHHHHHh----------cCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHH
Q 006494 382 VMKIRMLSKENPDNRILIANNGGIRPLVQLL----------SYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAII 450 (643)
Q Consensus 382 l~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv 450 (643)
+..|+.++ +++.+-..+....++..|.++- ...++.+...|+++|.|+-. ++..+..+++.|+.+.++
T Consensus 2 L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 55677777 4555666665555666666654 23478899999999999764 566777778999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHccc-cccccchhhc-cCChHHHHHHcccC-----------------ChhhHHHHH
Q 006494 451 EILQNG-----TNEARENSAAALFSLSM-LDENRVMVGN-LNGIPPLVNLLRYG-----------------SIRGKKDAA 506 (643)
Q Consensus 451 ~lL~~~-----~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~s~-----------------~~~~k~~A~ 506 (643)
+.|+.. +.+..-....+||-++. ..+.+..+.+ .+++..++..|... .......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999986 67888889999998874 4456666665 57777777665310 223456788
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHhcc---------CChhhHHHHHHHHHHHhCC-hhh-------HHH----HHh
Q 006494 507 TALFNLSINQSNKSRAIKAGIIPSLLKLLED---------KALGMVDEALSILQLLASH-PEG-------RNE----IGR 565 (643)
Q Consensus 507 ~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~Al~iL~nLa~~-~~~-------~~~----i~~ 565 (643)
.+++|+..+......--..+.++.|+.++.. +.......++.+|.|+--. ... ... ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998754443322234556666555432 1224566677777776211 000 000 112
Q ss_pred cCcHHHHHHHHhc----CC----hHHHHHHHHHHHHhccCCHHHHHHHH----------------HcCcHHHHHHHHhhC
Q 006494 566 LSFIETLVEIIKN----GT----PKNKECATSVLLELGLNNSYFILAAL----------------QYGVYEHLVEITRCG 621 (643)
Q Consensus 566 ~g~i~~Lv~lL~~----~s----~~~ke~A~~~L~~L~~~~~~~~~~~~----------------~~g~i~~L~~ll~~g 621 (643)
...+..|+.+|.. .. .+.-.--+.+|..+|..+...+..+. ...+-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2457777777753 11 12223445677777776544333332 235688899999998
Q ss_pred CHHHHHHHHHHHHHhhh
Q 006494 622 TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 622 ~~~~k~~A~~lL~~l~~ 638 (643)
.+..|..+..+|..||+
T Consensus 321 ~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 89999999999999986
No 102
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.49 E-value=6.9e-05 Score=80.58 Aligned_cols=67 Identities=25% Similarity=0.526 Sum_probs=57.2
Q ss_pred CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc-hhhhHHHHHHH
Q 006494 268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP-NYALRNLIVQW 335 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~w 335 (643)
.++++..||+|..++.||+.+ .|||.||+.||..|+.. +..||.++..+......| ...++..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 367889999999999999994 99999999999999998 889999998887766665 45666666665
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.49 E-value=0.0007 Score=67.55 Aligned_cols=181 Identities=16% Similarity=0.082 Sum_probs=116.9
Q ss_pred ccCCHHHHHHHHHHHHHccccc---cccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcH
Q 006494 454 QNGTNEARENSAAALFSLSMLD---ENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGII 528 (643)
Q Consensus 454 ~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v 528 (643)
.+.+++.|..|...|..+.... .....+.. ...+..++..+.+....+.+.|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4568899998988888886544 23333322 245567777777777788899999999998754444333345688
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc-HHHHHHHHhcCChHHHHHHHHHHHHhccCCH---HHHHH
Q 006494 529 PSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF-IETLVEIIKNGTPKNKECATSVLLELGLNNS---YFILA 604 (643)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~---~~~~~ 604 (643)
|.|++.+.+++..+.+.|..+|..++.+-..- ..+ ++.+...+.+.++..|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 99999999888889999999999998874311 122 5566667788899999999999888876554 11111
Q ss_pred -HHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 605 -ALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 605 -~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
..-..+++.+...+.++++.+|+.|..+++.+.+.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 11134788889999999999999999999988653
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0087 Score=60.72 Aligned_cols=278 Identities=13% Similarity=0.117 Sum_probs=177.4
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHH--HHHHhcCCCHHHHHHHHHHHHhc-ccChh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP--LVQLLSYPDSKIQEHTVTALLNL-SLDET 435 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~--Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~ 435 (643)
..+.++.++..+-..+.++...|.+.|..++. .+..-..+.+...... +..+-...+.-.+......+..+ +.++.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 45678888888888899999999999999884 5555555555443333 23333333444555666666555 45666
Q ss_pred hHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHH----H
Q 006494 436 NKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAAT----A 508 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~----a 508 (643)
.-.....+|.+..|..-|+. .+.-++.+..-....|+..+..++.+.+.|.|+.+.+++.-. ++-.+..++. .
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 66666688988888887875 466677888888889998899999999999999999988532 3433443433 2
Q ss_pred HHHhhcCCCchHHHHhc--CcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc--HHHH-HHHHhcCChHH
Q 006494 509 LFNLSINQSNKSRAIKA--GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF--IETL-VEIIKNGTPKN 583 (643)
Q Consensus 509 L~nLs~~~en~~~iv~~--G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~--i~~L-v~lL~~~s~~~ 583 (643)
+.++....-.-..++++ -++...++++...++..++.|+.++..|-++.+|...+.+.|- ...+ ..........-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 33333322222233321 2455556777778889999999999999999999999988764 3333 33333333344
Q ss_pred HHHHHHHHHHhccC---CHHHHHH---------H-H----Hc---CcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 584 KECATSVLLELGLN---NSYFILA---------A-L----QY---GVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 584 ke~A~~~L~~L~~~---~~~~~~~---------~-~----~~---g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
++.|..+|.+++.. .++.... . . +. .-.+....+++...+..+-.|.+.+..+.
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 56677777777653 2221111 0 0 11 11333444556667787777777766553
No 105
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=8.7e-05 Score=78.74 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=59.9
Q ss_pred cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC-----CCCchhhhHHHHHHHHhh
Q 006494 265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL-----SLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-----~l~pn~~lr~lI~~w~~~ 338 (643)
.+..++.+|.|-||...+.+||++||||+||..||.+-++. ...||.|+.++... ...+|+.++.+|..++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999999999999997774 57899999888742 233577777888888754
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.025 Score=57.48 Aligned_cols=263 Identities=14% Similarity=0.087 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHH----HHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRI----LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAI 449 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~----~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~L 449 (643)
+..+..-+++.+..+....+.|-. .++++|..+.++......|.++...|...+..++..+..-..+.++..++.+
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdl 174 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDL 174 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH
Confidence 334444455555444433333321 2357888999999999999999999999999999988888888877766655
Q ss_pred HHH--HccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhc
Q 006494 450 IEI--LQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKA 525 (643)
Q Consensus 450 v~l--L~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~ 525 (643)
-.. --..+.-+|......+..+.. ..+.....-.+|.+..|..=++- .+.-+..+++...+.|...+..+..+.+.
T Consensus 175 hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe 254 (524)
T KOG4413|consen 175 HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE 254 (524)
T ss_pred HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh
Confidence 432 112233445555555555543 33444455557777777666654 56677788888999999888889888999
Q ss_pred CcHHHHHHHhccC--ChhhHHHHHHHHH----HHhCChhhHHHHHhc--CcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 526 GIIPSLLKLLEDK--ALGMVDEALSILQ----LLASHPEGRNEIGRL--SFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 526 G~v~~Lv~lL~~~--~~~~~~~Al~iL~----nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
|.|+.+-.++... ++--.-.++-... +++--.-.-+++.+. -+|....+++...+++..+.|+.+|..+.++
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 9999999999652 3322232433333 333222223334332 3466667888889999999999999999886
Q ss_pred CHHHHHHHHHcC--cHHHHHHHHhhCCHHHH-HHHHHHHHHhh
Q 006494 598 NSYFILAALQYG--VYEHLVEITRCGTNRGQ-RKANSLLQHMS 637 (643)
Q Consensus 598 ~~~~~~~~~~~g--~i~~L~~ll~~g~~~~k-~~A~~lL~~l~ 637 (643)
..+. ..++..| ....|+.-..+.+..++ +.|...|.++.
T Consensus 335 teGa-dlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 335 TEGA-DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred cchh-HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 5443 3344433 33444433334444443 44444555544
No 107
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0054 Score=66.32 Aligned_cols=239 Identities=15% Similarity=0.082 Sum_probs=165.7
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
+.||.|-.-+...++.++...+.-|.-|-.-++..-.-.-...++.|..+|.+.+.++|..+-.++.++-..-.++-.-.
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~ 246 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM 246 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 45555555555667788777776665543333222111234578889999999999999877777776532111211111
Q ss_pred c-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCCh-hhHHHHH---HHHHHHhCCh
Q 006494 483 N-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL-GMVDEAL---SILQLLASHP 557 (643)
Q Consensus 483 ~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~-~~~~~Al---~iL~nLa~~~ 557 (643)
+ ...++.++.-+.+..+..+..|+.-|.....-++...-..-+|++..++.++.+... ...+.+. ..|..+++.+
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 3 457889999999999999999999999988877776666678889999999877544 2333332 2355566665
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 558 EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 558 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
...+.+.-...+..+.+.+.+...+.|-.++..+..|-...+...- .-...+.+.|+.-+.+.++.+-..+.++|..++
T Consensus 327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 5555532224578888889888899999999988888776554332 233568888888888999999999999999888
Q ss_pred hccCC
Q 006494 638 KREHI 642 (643)
Q Consensus 638 ~~~e~ 642 (643)
...+-
T Consensus 406 ~s~~~ 410 (675)
T KOG0212|consen 406 SSSNS 410 (675)
T ss_pred cCccc
Confidence 76543
No 108
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.38 E-value=0.00019 Score=70.71 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=56.4
Q ss_pred ccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcc-cCCCCCCchhhhHHHHHHHHhh
Q 006494 273 FLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQI-LDHLSLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~pn~~lr~lI~~w~~~ 338 (643)
+.||+|..++++|+-+ +|||+||..||+.-+-...+.||.|... +-...++|+...+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999988 6899999999999988778999999653 4456789998888888877653
No 109
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0037 Score=67.57 Aligned_cols=234 Identities=19% Similarity=0.155 Sum_probs=158.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh---hChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK---ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
..++-|++.|...+++++.-+-..+..+.. .+|..- --...++.++.-+.++++.+|..|+.-+.....-....
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 456677888888888888544333332221 122211 11246788999999999999999988776655433333
Q ss_pred HHHHhcCChHHHHHHHccCCH-HHHHHHHH---HHHHccccccccchhhccC-ChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 438 RHIAREGAIPAIIEILQNGTN-EARENSAA---ALFSLSMLDENRVMVGNLN-GIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~---~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
-...-+|.+..++..+.+... .++..+.- .+..+......+.. .+.| .+..|...+.++....+..++.-+..|
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 333456777777777766543 34443333 23334333333333 4444 568889999999999999999999888
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL 592 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 592 (643)
-...+++--.-.....+.|+.-|.+.+..++..++.+++++|..+..... -.++..|+++......-....+.-++.
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 88878877767788999999999999999999999999999998765522 134555666666655556677888888
Q ss_pred HhccC-CHHH
Q 006494 593 ELGLN-NSYF 601 (643)
Q Consensus 593 ~L~~~-~~~~ 601 (643)
.||.. ++++
T Consensus 441 qlC~lL~aE~ 450 (675)
T KOG0212|consen 441 QLCLLLNAER 450 (675)
T ss_pred HHHHHhCHHH
Confidence 88864 4443
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.36 E-value=0.00097 Score=66.49 Aligned_cols=181 Identities=20% Similarity=0.155 Sum_probs=114.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhhC--hhhHHHHHh--hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCCh
Q 006494 371 SSSQLNIKRDSVMKIRMLSKEN--PDNRILIAN--NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAI 446 (643)
Q Consensus 371 ~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i 446 (643)
++.+|+.+.+|+..|+.+.+.+ ......+.+ ...+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5689999999999999999877 333333332 245667777777767778888999888887543322111123478
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCC-hHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHHHh
Q 006494 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIK 524 (643)
Q Consensus 447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~ 524 (643)
+.|++.+.++...++..|..+|..+...-.. .... ++.+...+.+.++.++..++..|..+....+ ....+-.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-----~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSY-----SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCc-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 8899988888888999999999888643331 1122 4666677788899999999999998876433 2222211
Q ss_pred ----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 525 ----AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 525 ----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
..+++.+...+.+.++++.+.|-.++..+..+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 34778888889999999999999999998765
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.36 E-value=0.026 Score=59.72 Aligned_cols=187 Identities=26% Similarity=0.335 Sum_probs=134.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..+..+++.+.+.+..++..|...+..+. ..-+++.|..+|.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 46888888898888888888888765543 1236788999999999999999999776643
Q ss_pred HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhh------------HHHHHH
Q 006494 441 AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG------------KKDAAT 507 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~------------k~~A~~ 507 (643)
....++.++..|.+ ++..+|..++.+|..+- ...++.+|+..+....... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 34578999999984 78999999999998763 3345788888887765322 222222
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006494 508 ALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECA 587 (643)
Q Consensus 508 aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A 587 (643)
+|.. +-....++.+.+.+.+....+...|...|..+.... ....+.+...+...+...+..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 223457888999998888888999999998888765 2345666666766777666666
Q ss_pred HHHHHHhcc
Q 006494 588 TSVLLELGL 596 (643)
Q Consensus 588 ~~~L~~L~~ 596 (643)
+..|..+-.
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 665554443
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.33 E-value=0.017 Score=63.64 Aligned_cols=235 Identities=18% Similarity=0.243 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-----CHHHHHHHHHHHHhccc-ChhhHHHHH-hcC
Q 006494 372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-----DSKIQEHTVTALLNLSL-DETNKRHIA-REG 444 (643)
Q Consensus 372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~-~~~~k~~i~-~~g 444 (643)
..++++..+|+++|.|+...++..|..+++.|..+.++..|+.. +++..-...++|.-++. ....+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999876 67888888888887764 456666666 668
Q ss_pred ChHHHHHHHcc----------C-------CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc---------CC
Q 006494 445 AIPAIIEILQN----------G-------TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY---------GS 498 (643)
Q Consensus 445 ~i~~Lv~lL~~----------~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s---------~~ 498 (643)
++..|+..|.. . +.++...+..++||+.........--..+.++.|+.++.. ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888887731 0 2344567788999997654433221123445555554421 12
Q ss_pred hhhHHHHHHHHHHhhcC-CCc-------h----HHHHhcCcHHHHHHHhcc-----CC-h--hhHHHHHHHHHHHhCC-h
Q 006494 499 IRGKKDAATALFNLSIN-QSN-------K----SRAIKAGIIPSLLKLLED-----KA-L--GMVDEALSILQLLASH-P 557 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~-~en-------~----~~iv~~G~v~~Lv~lL~~-----~~-~--~~~~~Al~iL~nLa~~-~ 557 (643)
......++.+|.|+-.. ... . .......++..|+.+|.. .. . +...-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 45667777888877210 000 0 011224467777777754 11 1 2344457778888776 4
Q ss_pred hhHHHHHh---------------c-CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 006494 558 EGRNEIGR---------------L-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL 606 (643)
Q Consensus 558 ~~~~~i~~---------------~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~ 606 (643)
..|..+.. . ..-..|++++.+..+..|..+...|+.||..+...-....
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~ 347 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYV 347 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 44544432 2 2346899999887799999999999999988765444433
No 113
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.22 E-value=0.022 Score=61.75 Aligned_cols=151 Identities=22% Similarity=0.153 Sum_probs=101.2
Q ss_pred ChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494 404 GIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 404 ~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
+++.|+..|. ..+.+....++.++.. .++ ..++..++..|.+.+..++..++.+|.. ++
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~----------i~ 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW----------LG 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc----------CC
Confidence 5677777774 4455655544444432 111 1137788888888887788777777753 34
Q ss_pred ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
..++.+.|+.+|.+.++.++..++.++.. ......+.|..+|.+.++.+...|+.+|..+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 55677888888888888777777766554 112345678888887788888888888876553
Q ss_pred HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
...++.|...+.+.++.+|..|+..|..+.
T Consensus 177 ---~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 345666777777778888888877775553
No 114
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.019 Score=66.30 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=169.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHH-hcccChhhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALL-NLSLDETNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~k~ 438 (643)
.+.+|..++.|-| .--|.+|+.-|.....-.+=.-..-..-|..|.++++|.++-.+++.--+-+=. -|+.++..+.
T Consensus 471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 3566666666644 223455555555444222222222234599999999999987777654433322 3577888888
Q ss_pred HHHhcCChHHHHHHHcc-C--CHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhh
Q 006494 439 HIAREGAIPAIIEILQN-G--TNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLS 513 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~-~--~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs 513 (643)
.+++.++-.-.+.+|.. + +++-|.-||-+|..+..+.. .++...+.+.|...+..|.++ .+-.+...+.+|..|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 88887777777777776 3 45778888888888875543 566666777888888888876 5778889999999997
Q ss_pred c-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-----hhhHHHH-----------HhcCcHH----HH
Q 006494 514 I-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-----PEGRNEI-----------GRLSFIE----TL 572 (643)
Q Consensus 514 ~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-----~~~~~~i-----------~~~g~i~----~L 572 (643)
. +.++|-.-++.++...|+.+|.++-+++...|+-+|..+..+ ++....+ ...+.+. .+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 6 666788888899999999999999999999999999998884 2222222 1122333 56
Q ss_pred HHHHhcCChHHHHHHHHHHHHhccCCHHHHHH
Q 006494 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILA 604 (643)
Q Consensus 573 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 604 (643)
+.++..+++-.+...+.+|..+..+.......
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~ 740 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKV 740 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence 77778899988877777888877765544333
No 115
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0088 Score=65.88 Aligned_cols=268 Identities=15% Similarity=0.096 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHH-h---hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIA-N---NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET 435 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 435 (643)
...++.|.+.|.+.+...+..|..+|..++..+.+.-..-+ . .-.+|.++.+.+++++.++.+|+.++...... .
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-Q 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-C
Confidence 36789999999998888888888888888755443322211 1 23688999999999999999999988654332 2
Q ss_pred hHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 436 NKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 436 ~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
.+..+. -..+++.+..+-.+.++++|.+.+.++..|...-.. ++.. .+.+.-++..-++.+..+-..|+.....+
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 333333 345777787777778999999999999888643222 2222 45778888888888888999999999999
Q ss_pred hcCCCchHHHHh--cCcHHHHHHHhccCChh-------------------------------------------------
Q 006494 513 SINQSNKSRAIK--AGIIPSLLKLLEDKALG------------------------------------------------- 541 (643)
Q Consensus 513 s~~~en~~~iv~--~G~v~~Lv~lL~~~~~~------------------------------------------------- 541 (643)
+..+--+..+.. ...+|.|++-+.-.+.+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 987733433333 45666665433211000
Q ss_pred -------hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CCh--HHHHHHHHHHHHhccCCHHHHHHHHHcCc
Q 006494 542 -------MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTP--KNKECATSVLLELGLNNSYFILAALQYGV 610 (643)
Q Consensus 542 -------~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~--~~ke~A~~~L~~L~~~~~~~~~~~~~~g~ 610 (643)
+..-.+++|--|+ .+.....++.++.+|+. +++ .+||.++-+|..++.+.-....--+ ...
T Consensus 364 D~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peL 435 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PEL 435 (885)
T ss_pred cccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHH
Confidence 0111111111111 12234566666666654 334 4577888888888875432111100 236
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 611 YEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 611 i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+|.|+.++.+..+-+|....+.|...+.
T Consensus 436 ip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 436 IPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 8899999999999999998888877664
No 116
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.15 E-value=0.00027 Score=71.49 Aligned_cols=65 Identities=14% Similarity=0.391 Sum_probs=52.9
Q ss_pred CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCC----CCCchhhhHHHHHH
Q 006494 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHL----SLAPNYALRNLIVQ 334 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~ 334 (643)
+-...+|++|..+|.|+.++ .|=|||||+||-++|.. ..+||.|+..+-.. .+.+++.|..++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34667999999999999976 59999999999999998 78999998776533 46667777666644
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.14 E-value=0.0019 Score=53.69 Aligned_cols=86 Identities=36% Similarity=0.486 Sum_probs=69.6
Q ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc
Q 006494 405 IRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN 483 (643)
Q Consensus 405 i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 483 (643)
|+.|++.| +++++.++..++.+|.++- ...+++.|+.+++++++.+|..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 57899988 8889999999999998642 124589999999999999999999999876 45
Q ss_pred cCChHHHHHHcccCC-hhhHHHHHHHHH
Q 006494 484 LNGIPPLVNLLRYGS-IRGKKDAATALF 510 (643)
Q Consensus 484 ~g~i~~Lv~lL~s~~-~~~k~~A~~aL~ 510 (643)
..+++.|..++.+++ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 668999999998764 455777877763
No 118
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.037 Score=61.70 Aligned_cols=253 Identities=16% Similarity=0.166 Sum_probs=160.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccC-hhhH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLD-ETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~-~~~k 437 (643)
+..++.|++.|..+|+.++-.|+..++.|++.+|.|.-.++ |.+.++|.. .+..+....+....+|+-- +.-.
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccCCCeehHHHHHHHhhccccCchhh
Confidence 45789999999999999999999999999999988765553 677777754 3445556677777777633 3222
Q ss_pred HHHHhcCChHHHHHHHccCC-HHHHHHHHHHHHH--ccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 438 RHIAREGAIPAIIEILQNGT-NEARENSAAALFS--LSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~--Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
. ..+++|++++.+.. ......+..++.. ++... ++-..+ .-++..|-.++.+.++..|..++.|+.-+.
T Consensus 255 K-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 255 K-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred h-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 2 36788999887753 3333333333332 22211 111111 125677777888889999999999999888
Q ss_pred cCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHH
Q 006494 514 INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLL 592 (643)
Q Consensus 514 ~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~ 592 (643)
..+.- .+.+ --..++++|.+.+..+.-.|+..|.-++.....+ .++..|+..+...+ ...|..-+.-+.
T Consensus 328 ktHp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~------eIVk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 328 KTHPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLM------EIVKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred hhCHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 64332 2211 2345788999989999999999998887743222 23555655554333 355555555566
Q ss_pred HhccCCH-HHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHh
Q 006494 593 ELGLNNS-YFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHM 636 (643)
Q Consensus 593 ~L~~~~~-~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l 636 (643)
.+|+.+. .+...+ +=.+..|+++.. .|+..+..-|..++-..
T Consensus 398 ~iCS~snY~~ItdF--EWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 398 SICSQSNYQYITDF--EWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred HHhhhhhhhhhhhH--HHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 7776532 222211 234666677654 55677776666665543
No 119
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.03 E-value=0.02 Score=58.03 Aligned_cols=227 Identities=16% Similarity=0.137 Sum_probs=158.6
Q ss_pred HhcCCCHHHHHHHHHHHHhcccChhhHHHHH-hcCChHHHHHHHcc--CCHHHHHHHHHHHHHccccccccchhhc-cCC
Q 006494 411 LLSYPDSKIQEHTVTALLNLSLDETNKRHIA-REGAIPAIIEILQN--GTNEARENSAAALFSLSMLDENRVMVGN-LNG 486 (643)
Q Consensus 411 lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~ 486 (643)
++..-++-++.-|+.+|.+|....+.|..+- +...-..+++.+++ |..+.+.++.-+++.|++.......|-. ...
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333345577889999999998888877665 44466788888887 5688999999999999988876644444 457
Q ss_pred hHHHHHHcccC-ChhhHHHHHHHHHHhhc-C-CCchHHHHhcCcHHHHHHHhcc---CChhhHHHHHHHHHH-------H
Q 006494 487 IPPLVNLLRYG-SIRGKKDAATALFNLSI-N-QSNKSRAIKAGIIPSLLKLLED---KALGMVDEALSILQL-------L 553 (643)
Q Consensus 487 i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~-~-~en~~~iv~~G~v~~Lv~lL~~---~~~~~~~~Al~iL~n-------L 553 (643)
|.-|+.++++. ...+.+-++.++.|++. . .+....+.-.|-+.+-++.|.. .+.+++...-.+=.. |
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888776 56677888999999987 2 2344555556655555666544 233333221111111 1
Q ss_pred hCC------------------------hhhHHHHHhc--CcHHHHHHHHhcCChH-HHHHHHHHHHHhccCCHHHHHHHH
Q 006494 554 ASH------------------------PEGRNEIGRL--SFIETLVEIIKNGTPK-NKECATSVLLELGLNNSYFILAAL 606 (643)
Q Consensus 554 a~~------------------------~~~~~~i~~~--g~i~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~~~ 606 (643)
+.. ..+...+.+. ..+..|.++++...+. .-.-|+.-+..+.+..|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 110 1134444443 4678888899886655 344577778888888888888888
Q ss_pred HcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 607 QYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 607 ~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..|+-..+++++.+.++++|=.|...++.+-
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8999999999999999999999998888654
No 120
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0046 Score=66.40 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=148.1
Q ss_pred HHHHHHhcccC-hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChh
Q 006494 423 TVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIR 500 (643)
Q Consensus 423 a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~ 500 (643)
++..|..++.+ ..-|.-+.+....++|+++|.+++..+.-.+...+.|+.. .+..+..+.+.|.|..|++++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34445555433 2446666788899999999999776666677788888764 445788888999999999999998889
Q ss_pred hHHHHHHHHHHhhcCCCc--hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh----hHHHHHhcC----cHH
Q 006494 501 GKKDAATALFNLSINQSN--KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE----GRNEIGRLS----FIE 570 (643)
Q Consensus 501 ~k~~A~~aL~nLs~~~en--~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~----~~~~i~~~g----~i~ 570 (643)
.+.+..+.+++|..+..+ +-+++..-++..++++..++.-.+++.++.+|.|+..+.. .+..+.... ...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999875443 5677888889999999988888999999999999988532 222222221 234
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHh
Q 006494 571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ-YGVYEHLVEITR 619 (643)
Q Consensus 571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~ 619 (643)
.|++.++..+|..-+..+.+|.+++..++.....+.+ ...+..+.+++.
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 5666677788887778899999999888776666654 456666666554
No 121
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.02 E-value=0.023 Score=60.11 Aligned_cols=190 Identities=28% Similarity=0.328 Sum_probs=128.6
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
..++.+..++.+.++.++..+...+..+. ..-+++.+..++.+.+..+|..|+.+|..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 46788999999988888888887754432 344789999999999999999888866554 3
Q ss_pred ccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH-HHhCC----
Q 006494 483 NLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ-LLASH---- 556 (643)
Q Consensus 483 ~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~-nLa~~---- 556 (643)
...+++.|+.++. +.+..++..|+.+|..+-. ..++.+|+..+.+..... +...+. .+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~---a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS---AAAALDAALLDVRAAA 169 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh---hhhhccchHHHHHHHH
Confidence 4558899999998 5788999999999987643 234888888887654322 111110 00000
Q ss_pred hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
......+.....++.+.+++......++..|+.+|..+...+ ..+.+.+...+.+.+...+.++...|-
T Consensus 170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 011111223456888999999988899999999999988875 123344444455555555555444443
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.02 E-value=0.0029 Score=52.62 Aligned_cols=86 Identities=33% Similarity=0.477 Sum_probs=68.7
Q ss_pred hHHHHHHH-ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494 446 IPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524 (643)
Q Consensus 446 i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~ 524 (643)
|+.|++.| +++++.+|..++.+|..+ +...+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899989 778899999999998833 33467999999999999999999999998772 3
Q ss_pred cCcHHHHHHHhccC-ChhhHHHHHHHHH
Q 006494 525 AGIIPSLLKLLEDK-ALGMVDEALSILQ 551 (643)
Q Consensus 525 ~G~v~~Lv~lL~~~-~~~~~~~Al~iL~ 551 (643)
..+++.|.+++.++ +..+...|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45899999999775 4445777777763
No 123
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.90 E-value=0.00094 Score=54.48 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=33.2
Q ss_pred cCccCcccccC-Cee-cCCcccccHHhHHHHHhc--CCCCCCCCCcccC
Q 006494 274 LCPVTLEIMTD-PVI-VATGQTYERESIQRWLNS--NHKTCPKTGQILD 318 (643)
Q Consensus 274 ~Cpi~~~~m~d-Pv~-~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 318 (643)
.||.|..--.| |++ -.|||.|..+||.+|++. .+.+||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 45554444334 554 479999999999999995 3568999999864
No 124
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.45 Score=55.41 Aligned_cols=135 Identities=22% Similarity=0.238 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhhc-CCCchHHH----HhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHH
Q 006494 501 GKKDAATALFNLSI-NQSNKSRA----IKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE 574 (643)
Q Consensus 501 ~k~~A~~aL~nLs~-~~en~~~i----v~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~ 574 (643)
-...++.||.||.+ +++-.+-+ .=-|-++.+..+|.. +++.++..|+.++..+..+.++...+++.+.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34578899999987 55433322 225778888888876 6778999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494 575 IIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEIT-RCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 575 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~ 637 (643)
+|++ -|..|+.++.+|+.|++.. +....+.+.|++..+..++ .+.++..|..|+++|--|.
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 9975 4678899999999999864 4555566667777776655 5557888889999987764
No 125
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00066 Score=70.29 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=40.7
Q ss_pred ccCccCcccccC--C-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 273 FLCPVTLEIMTD--P-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 273 f~Cpi~~~~m~d--P-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
+.|-||+|-+.+ - +++||+|.|...||..|+......||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 799999999984 3 3689999999999999999876779999987654
No 126
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.82 E-value=0.017 Score=53.21 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=74.6
Q ss_pred chhhhhHHHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHH
Q 006494 48 KTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYD 127 (643)
Q Consensus 48 ~~~~k~~~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~~i~~~~~~~~~ 127 (643)
...|..+..|..-++.|.|+++|+...+..++.+-..-++.|...|++++.|++.|+..+ -|=+..-.....+++++-.
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~ 108 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE 108 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence 444666778999999999999999876655555558889999999999999999999876 4555677789999999999
Q ss_pred HHHHHhcc-CCCC
Q 006494 128 KLYEALDD-VPYD 139 (643)
Q Consensus 128 ~l~~~L~~-~p~~ 139 (643)
+|.+.++. +|+.
T Consensus 109 ~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 109 SLRRFIQVDLQLH 121 (147)
T ss_pred HHHHHhcchhHHH
Confidence 99998874 6644
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.16 Score=55.45 Aligned_cols=259 Identities=19% Similarity=0.171 Sum_probs=146.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---------
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--------- 433 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--------- 433 (643)
.|+|-..|++.-..++.++++.+..++..+- -..+. ...+..|-.+|+++....|-.|+++|..|+..
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 3444455566667888999999988875441 11122 23577788899999999999999999988742
Q ss_pred hhhHHHHHhcC---ChHHHHHHHccCCHHHHHHHHHHHHHccc--cccccchhhcc-------------CChHHHHHHc-
Q 006494 434 ETNKRHIAREG---AIPAIIEILQNGTNEARENSAAALFSLSM--LDENRVMVGNL-------------NGIPPLVNLL- 494 (643)
Q Consensus 434 ~~~k~~i~~~g---~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~--~~~~k~~i~~~-------------g~i~~Lv~lL- 494 (643)
.+.-..|.+.+ ..=++..+|+.|+.+....-...+-++.. .+..|..+.+. ..+..|.+.|
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~ 422 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL 422 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 12222333322 23367788888877665555555554432 22333333221 1233344333
Q ss_pred ccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhc-CcHHH
Q 006494 495 RYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRL-SFIET 571 (643)
Q Consensus 495 ~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~~ 571 (643)
+.|.-+.|+.++.+|..... .|+.+.++ +..|..++.+. +.-+-++.+|..|-.. |... .. -.+..
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~----~P~~yvrh 491 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRAK----TPGKYVRH 491 (898)
T ss_pred hcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCCC----CcchHHHH
Confidence 33455666666666655443 33444443 23344444432 2233345555555443 1110 00 11223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+..-+.-.+..+|..|+.+|...+-+-... .....+...|.+.+.+.++.+|..|.-+|++|+.
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 322222245567888888887766542211 1223456677788899999999999999999974
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.044 Score=60.40 Aligned_cols=230 Identities=14% Similarity=0.133 Sum_probs=148.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..++.++....+....+|..|....+.+...-+..... -.++.++.-+....|.....++..|..++.....+-..
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 45666666666677778877776666554322111111 12344444444447899999999999888777666666
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh----------h----------------------ccCChH
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV----------G----------------------NLNGIP 488 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i----------~----------------------~~g~i~ 488 (643)
.-...+|.+.+.|-+..+++|..+..++..+...-+|.... + +.-.+.
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLa 371 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLA 371 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHH
Confidence 67789999999999999999999999998887544443210 0 112344
Q ss_pred HHHHHccc----CChhhHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494 489 PLVNLLRY----GSIRGKKDAATALFNLSINQSNKSRAIK--AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 489 ~Lv~lL~s----~~~~~k~~A~~aL~nLs~~~en~~~iv~--~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
.++.+|+. .+...++.++.++.|+|.--++...+.. .-.+|.|-..+.+..++++..+..+|+.+-..-..+..
T Consensus 372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 55555543 3567788999999999986655555433 23455555555556788999999998777664333322
Q ss_pred HHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccC
Q 006494 563 IGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLN 597 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~ 597 (643)
.+.+|.+.+.+... +...+.-++..|..++.+
T Consensus 452 ---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 452 ---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred ---cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 46677777777542 334444555555555554
No 129
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.75 E-value=0.027 Score=52.11 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=96.2
Q ss_pred hhhccCChHHHHHHcccCCh------hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHH
Q 006494 480 MVGNLNGIPPLVNLLRYGSI------RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQ 551 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~~~------~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~ 551 (643)
.+...|++..|++++.++.. .....++.++.+|-.+.-.-...++...|..++..+... +..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 44567899999999998863 556678888888877665555677777888888888653 5778999999999
Q ss_pred HHhCChhhHHHHHhcC-cHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 552 LLASHPEGRNEIGRLS-FIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 552 nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
+++.++......++.. .++.|+.+|+..+++.+.+|++.+-.|....+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999977755555554 58999999999999999999999988876544
No 130
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.73 E-value=0.0035 Score=43.85 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=35.9
Q ss_pred hhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 393 PDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 393 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
++++..+.+.|+++.|+.+|.+++.+++..++.+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999999999999986
No 131
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.014 Score=64.28 Aligned_cols=255 Identities=16% Similarity=0.164 Sum_probs=167.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc------C
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL------D 433 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~------~ 433 (643)
+..+..|+....+.+..++..|+..+-.|.. ....... .....++.+++.+..++..|+.++.-++. .
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3445558888888899999999999887773 2222211 23557889999889999988776654431 1
Q ss_pred -hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHH-
Q 006494 434 -ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALF- 510 (643)
Q Consensus 434 -~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~- 510 (643)
+.+...+.+ .++..+++.+++.+..+|..|+.+|..+....+ .-.+..+ +.+..-++. .+........++
T Consensus 271 ~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRR--kr~ahkrpk~l~s 343 (823)
T KOG2259|consen 271 RESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRR--KRTAHKRPKALYS 343 (823)
T ss_pred chhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhh--hhhcccchHHHHh
Confidence 122223333 368889999999999999999999988753332 1111111 111111100 011111111111
Q ss_pred Hh--hc------------CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH
Q 006494 511 NL--SI------------NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII 576 (643)
Q Consensus 511 nL--s~------------~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL 576 (643)
+. ++ ..+.-..++..|+-..++.=|.++--++...|++.++.|+.+..+ +. ..++..|+.++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA-~~aldfLvDMf 419 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FA-VRALDFLVDMF 419 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cH-HHHHHHHHHHh
Confidence 11 00 112244578889999998888877778999999999999987322 11 24678899999
Q ss_pred hcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 577 KNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 577 ~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.+.-..+|..|..+|..++.+ ..+++..++.+..-+.+.++.+|+....+|.+.+
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888889999999999999886 2344556777788888888888888888887653
No 132
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.13 Score=56.91 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=169.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHH-HHHHHHhcccChhhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH-TVTALLNLSLDETNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~nLs~~~~~k~ 438 (643)
....+.+.+.+++.+...+..+...+..+.+.+ .-..+.+.+.+..|.............. +.-+...+. .+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~---~~Lg 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ---GNLG 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH---HhcC
Confidence 456777788888888888999999988887432 3445566778888888887654333222 211111110 0000
Q ss_pred HHHhcCChHHHHHHHc---cCCHHHHHHHHHHHHHcc-ccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 439 HIAREGAIPAIIEILQ---NGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~---~~~~~~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
...+.+.++.+-.+|. +....+|..|..+...+. ..+.+.. .-.++.++.-+.....+.|..++..|..++.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1224555555555554 344666665555544432 2222211 1234555544444578999999999999998
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-----------------------------hHHHHH-
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-----------------------------GRNEIG- 564 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-----------------------------~~~~i~- 564 (643)
+.+..-......++|.|.+.|.+..+++++.+..+|..+++-.+ ++..++
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 88888888889999999999999999999999999988876322 111111
Q ss_pred --hcCcHHHHHHHHhc----CChHHHHHHHHHHHHhccCC--HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 565 --RLSFIETLVEIIKN----GTPKNKECATSVLLELGLNN--SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 565 --~~g~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
.+-.+..++.+|+. .+...+..++.+.+|+|.-- +......+ ..++|-|...+.+--|.+|.-|...|-
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 12345556666654 35566788999999999853 33333222 246777777777777899888888773
No 133
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00086 Score=75.64 Aligned_cols=47 Identities=23% Similarity=0.628 Sum_probs=42.3
Q ss_pred CCcccCccCcccccC-----CeecCCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494 270 PHEFLCPVTLEIMTD-----PVIVATGQTYERESIQRWLNSNHKTCPKTGQIL 317 (643)
Q Consensus 270 p~~f~Cpi~~~~m~d-----Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l 317 (643)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|++. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 346789999999999 789999999999999999998 68999999844
No 134
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0011 Score=66.14 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=43.7
Q ss_pred cCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494 274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320 (643)
Q Consensus 274 ~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 320 (643)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+|+.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999998888788999999999864
No 135
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.51 E-value=0.0051 Score=42.98 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=36.0
Q ss_pred CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
++++..+++.|+++.|+++|.+++..++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888999999999999998889999999999999974
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.44 E-value=0.063 Score=49.75 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=98.3
Q ss_pred hHHHHhcCcHHHHHHHhccCC------hhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHH
Q 006494 519 KSRAIKAGIIPSLLKLLEDKA------LGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNG--TPKNKECATS 589 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~------~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~ 589 (643)
...++..|++..|++++.++. ......++.++..|-.+.- +. ...+...|..++.++... +....+.|++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 457889999999999998754 3567778999999988854 44 455667899999998764 4778899999
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
+|-++..+++.....+.++=-++.|...++.+++..+.+|..++-.|-
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998886777777778999999999999999999999998764
No 137
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0014 Score=65.28 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=41.8
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
-.|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|++|.+..-
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 34889999999999999999999999999988887 478999988653
No 138
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0019 Score=64.19 Aligned_cols=47 Identities=13% Similarity=0.434 Sum_probs=39.0
Q ss_pred ccCccCccccc--CC-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 273 FLCPVTLEIMT--DP-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 273 f~Cpi~~~~m~--dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.-|.||++=+. |- +++||.|.|.+.||.+|+......||+|+.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999987664 33 4689999999999999999767789999988764
No 139
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.32 E-value=0.028 Score=54.27 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhhcCCCchHHHHh----------------cCcHHHHHHHhcc------CChhhHHHHHHHHHHHhCCh
Q 006494 500 RGKKDAATALFNLSINQSNKSRAIK----------------AGIIPSLLKLLED------KALGMVDEALSILQLLASHP 557 (643)
Q Consensus 500 ~~k~~A~~aL~nLs~~~en~~~iv~----------------~G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~~ 557 (643)
.....++..|.||+...+.+..++. ..++..|++.+.. ....-.+..+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 3445677888888887777765554 2367778888765 23456788999999999999
Q ss_pred hhHHHHHhc--Cc--HHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH--cCcHHHHHHHHh
Q 006494 558 EGRNEIGRL--SF--IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ--YGVYEHLVEITR 619 (643)
Q Consensus 558 ~~~~~i~~~--g~--i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~ 619 (643)
++|..+.+. +. +..|+.++...|..-|.-++.++.|+|-....+...+-. .+++|.|+.-+.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999874 44 778888888888888889999999999977766554433 467888776655
No 140
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.024 Score=62.57 Aligned_cols=172 Identities=17% Similarity=0.173 Sum_probs=123.9
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH--Hh---cCChHHHHHHHccCCHHHHHHHHHHHHHcccccc
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI--AR---EGAIPAIIEILQNGTNEARENSAAALFSLSMLDE 476 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i--~~---~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~ 476 (643)
...+|.|+.+|.+++...++-|..+|..++.+....-.- .. .-.+|.++.+.++.++..|..|.+++-.+-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 346889999999999999999999999988765322111 11 126788889999999999999998876553221
Q ss_pred ccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 477 NRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 477 ~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
.+..+.. ...+..|..+-.+.++.++++.+.++..|......+-.=--.++++.++..-.+.+..+.-+|+.....+|.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 2222222 346677777777789999999999999887644433222225677777777777888899999999999999
Q ss_pred ChhhHHHHHhc--CcHHHHHH
Q 006494 556 HPEGRNEIGRL--SFIETLVE 574 (643)
Q Consensus 556 ~~~~~~~i~~~--g~i~~Lv~ 574 (643)
.+..+..+... ..+|.|++
T Consensus 286 qpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHc
Confidence 99666666542 45666554
No 141
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.28 E-value=0.002 Score=68.43 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHh----cCCCCCCCCCcccCCCCCCc
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLN----SNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~----~~~~~cP~~~~~l~~~~l~p 324 (643)
..+-.|.+|.+.-.||+...|.|+|||-||.++.. +.+-+||.|..+|+.....|
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 35578999999999999999999999999988875 34578999999887654333
No 142
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0034 Score=64.08 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=39.9
Q ss_pred CcccCccCcccc-cCC------------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIM-TDP------------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m-~dP------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
++..|-||++=| +.| --+||||.+.-+|++.|++. ..+||+|+.|+-
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 567899998874 433 67999999999999999997 589999999954
No 143
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.13 Score=59.80 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=151.8
Q ss_pred HHHHHHHHHhccc----ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHH-ccccccccchhhccCChHHHHHHc
Q 006494 420 QEHTVTALLNLSL----DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFS-LSMLDENRVMVGNLNGIPPLVNLL 494 (643)
Q Consensus 420 ~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL 494 (643)
|.+-+++|.-|+. .+-....-..-|.+|-++++|++...+.|..-+-+=.. |+.++..+..++..++-.-.+..|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4455556655552 22222233367999999999999988888655544444 466666777787766556666666
Q ss_pred cc-C--ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCC-hhhHHHHHhcCc
Q 006494 495 RY-G--SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASH-PEGRNEIGRLSF 568 (643)
Q Consensus 495 ~s-~--~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~ 568 (643)
.. . +++-+..|+.+|..++. ++-.+....+.+.+..-++.|.++ .+-+..-++-+|..|=.+ +..|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 55 3 45778888899999887 444567778889999999999874 456677777888888776 555555556789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhccCC----HHHHHHH-----------HHcCcHH----HHHHHHhhCCHHHHHHH
Q 006494 569 IETLVEIIKNGTPKNKECATSVLLELGLNN----SYFILAA-----------LQYGVYE----HLVEITRCGTNRGQRKA 629 (643)
Q Consensus 569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~----~~~~~~~-----------~~~g~i~----~L~~ll~~g~~~~k~~A 629 (643)
...|..+|.+..+++|..|+.+|..+-.+. ++....+ .-+..+. +|+.++..|++-.+...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999888752 2111111 0122333 77788889999888776
Q ss_pred HHHHHHhh
Q 006494 630 NSLLQHMS 637 (643)
Q Consensus 630 ~~lL~~l~ 637 (643)
+..|..+.
T Consensus 724 ~v~ls~~~ 731 (1387)
T KOG1517|consen 724 VVALSHFV 731 (1387)
T ss_pred HHHHHHHH
Confidence 66666554
No 144
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.39 Score=54.55 Aligned_cols=269 Identities=17% Similarity=0.164 Sum_probs=156.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC---------------CCHHHHHHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY---------------PDSKIQEHTVT 425 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~ 425 (643)
..++...+.|.+.+.-+...++.-+..+++.++++-..+.+ .++.|+..|+. +||-+|...++
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 44555556666666666666777777777777766555554 55666666652 37888888888
Q ss_pred HHHhcccChhhHH-HHHh--------------cC---ChHHHHHHHc-cCCHHHHHHHHHHHHHcccccc-ccchhhc--
Q 006494 426 ALLNLSLDETNKR-HIAR--------------EG---AIPAIIEILQ-NGTNEARENSAAALFSLSMLDE-NRVMVGN-- 483 (643)
Q Consensus 426 ~L~nLs~~~~~k~-~i~~--------------~g---~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~-- 483 (643)
.|.-|-.++.+-. .|-+ .| ..+.+-.++. ..+...|..|+.+|..+-.+.+ |-..++=
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 8887765543322 1111 01 0111111111 1344677788888888765544 3222211
Q ss_pred --------cCCh----HHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494 484 --------LNGI----PPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ 551 (643)
Q Consensus 484 --------~g~i----~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~ 551 (643)
..++ ..++.+|++.+...++.|+..++-|.. ..|...| +..|+.+|...+++.......-+.
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVM-----VKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHH
Confidence 1122 256677778888888888888877753 3454444 345888887777888888888787
Q ss_pred HHhCC--hhhHHH-------------HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-------H----------
Q 006494 552 LLASH--PEGRNE-------------IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN-------S---------- 599 (643)
Q Consensus 552 nLa~~--~~~~~~-------------i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-------~---------- 599 (643)
.++.. |+.+=. ++..+++..++.++.++.++..+.++.-|+.-...+ +
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 77764 332211 234577888999998876555555555444322221 1
Q ss_pred -HHHHHHHH------------cCcHHHHHHHHhhC--CHHHHHHHHHHHHHhh
Q 006494 600 -YFILAALQ------------YGVYEHLVEITRCG--TNRGQRKANSLLQHMS 637 (643)
Q Consensus 600 -~~~~~~~~------------~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~ 637 (643)
++-..++. ..++..|.+++.+. +...|..|...|--|+
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111 33677788877654 4566777766655554
No 145
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.10 E-value=0.37 Score=47.48 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHcccccc--ccchhhccCChHH
Q 006494 417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG-----TNEARENSAAALFSLSMLDE--NRVMVGNLNGIPP 489 (643)
Q Consensus 417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~ 489 (643)
..-..+|+..|--++.+++.|..+..+..---+-.+|..+ .+-.|..+.+++..|..+++ .-..+...+.||.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3445677878888889999999999876544555666432 35578999999999986655 3445566899999
Q ss_pred HHHHcccCChhhHHHHHHHHHHhhcCCCchHHH-------Hh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhH
Q 006494 490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRA-------IK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 490 Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i-------v~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
.+..+..|+...|.-|..++.-+..++..-..+ -. .-.+..++.-+ ..++..+...++.+..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999988877665542222 11 22333344334 3378889999999999999999999
Q ss_pred HHHHhc--CcH--HHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 561 NEIGRL--SFI--ETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 561 ~~i~~~--g~i--~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
.++... +.+ .....+++ .++..+..-...+.++|.+
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred HHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhccC
Confidence 888652 111 12233343 4555666655666666653
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.24 Score=58.55 Aligned_cols=220 Identities=13% Similarity=0.165 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHhcccChhhHHHHHh--cCChHHHHHHHccCCHHHHHHHHHHHHHccccc--cccchhhccCChHH
Q 006494 414 YPDSKIQEHTVTALLNLSLDETNKRHIAR--EGAIPAIIEILQNGTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPP 489 (643)
Q Consensus 414 ~~~~~~~~~a~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~ 489 (643)
+.+..+|..+..+|..|+..+........ ......|...+++-...++..+..+|..|-... +....+ ...|+-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 34778899999999888766433333221 112223333334444445555555555543211 222222 124444
Q ss_pred HHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcC------cHHHHHHHhccC--ChhhHHHH--HHHHHHHhCC-hh
Q 006494 490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAG------IIPSLLKLLEDK--ALGMVDEA--LSILQLLASH-PE 558 (643)
Q Consensus 490 Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G------~v~~Lv~lL~~~--~~~~~~~A--l~iL~nLa~~-~~ 558 (643)
++-.++..+...++.|..+|.+++. .....+.| .+...+.++..+ +......| +-++..+... ..
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4444477788899999999998883 22222222 455555555432 22222222 2233333322 11
Q ss_pred hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.-....=.+.+..+..+|.+++++....|+..+..++..-++.+..--.+-+++.+..++++++-..+.+...+|..|.+
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11111112456666677788999999999999999999888776665556789999999999999999999999998865
Q ss_pred c
Q 006494 639 R 639 (643)
Q Consensus 639 ~ 639 (643)
.
T Consensus 899 k 899 (1176)
T KOG1248|consen 899 K 899 (1176)
T ss_pred H
Confidence 3
No 147
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.91 E-value=0.006 Score=62.14 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=44.5
Q ss_pred CCCcccCccCcccccC---Ce-ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494 269 VPHEFLCPVTLEIMTD---PV-IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~d---Pv-~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 324 (643)
-...|.||||+..|.. =| +.+|||.|...+|++-- ....||.|+.++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4678999999999964 22 35999999999999983 3567999999999888775
No 148
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.53 Score=53.39 Aligned_cols=256 Identities=20% Similarity=0.228 Sum_probs=159.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-Ch-----h
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DE-----T 435 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-----~ 435 (643)
..+++=+.|.+...-+..+|++.+..|...+. | .+. .++..|--+|+++..-+|-.|+++|..++. ++ -
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 34555566667778889999999988874332 2 222 277788888999989999999999988863 22 1
Q ss_pred hH---HHHHhcC---ChHHHHHHHccCCHHHH----HHHHHHHHHccccccccchhhc-------------cCChHHHHH
Q 006494 436 NK---RHIAREG---AIPAIIEILQNGTNEAR----ENSAAALFSLSMLDENRVMVGN-------------LNGIPPLVN 492 (643)
Q Consensus 436 ~k---~~i~~~g---~i~~Lv~lL~~~~~~~~----~~Aa~~L~~Ls~~~~~k~~i~~-------------~g~i~~Lv~ 492 (643)
|+ ..|.+.+ +-..+..+|+.|+.... ...+....+++ ++++..+++ .+.+..|.+
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 11 2233222 45577788888865433 34444555554 344443332 245666777
Q ss_pred Hccc-CChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494 493 LLRY-GSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570 (643)
Q Consensus 493 lL~s-~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~ 570 (643)
+|++ |.-+.|+....++..+.. +++.|.. ++..|.+.+.+. +....+..+|..|-... -.+.....-+.
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg--P~a~~Pskyir 469 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG--PKAPNPSKYIR 469 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC--CCCCCcchhhH
Confidence 7754 455677777777766554 5555544 344566666542 34455666666665431 11111123344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.+...+.-.+..+|..|+.+|..+..+++. ....+...|.+.+.+.++.++..|...|+.+..
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 444444446778888999999988854432 223456666678888999999999999998873
No 149
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.81 E-value=0.049 Score=46.63 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHH--hcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494 542 MVDEALSILQLLASH-PEGRNEIGRLSFIETLVEII--KNGTPKNKECATSVLLELGLNNSYFILAALQ 607 (643)
Q Consensus 542 ~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~ 607 (643)
+....+.+|+||+.. +..+..+.+.|+++.++..- ...+|-.+|+|+.++.+||.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 345678999999986 78899999999999998864 4578999999999999999999988877655
No 150
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0075 Score=59.51 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=41.7
Q ss_pred CCcccCccCcccccCCeecC-CcccccHHhHHHHHhc-CCCCCCCCCcccC
Q 006494 270 PHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS-NHKTCPKTGQILD 318 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~-~~~~cP~~~~~l~ 318 (643)
-..-.||+|++-=+.|.++. |||.||..||..-+.. -..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45678999999999999875 9999999999998873 2479999998765
No 151
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.097 Score=59.36 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=137.6
Q ss_pred ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHH-HccccccccchhhccCChHHHHHHcccCC-hhhHHHHHHHHH
Q 006494 433 DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALF-SLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKDAATALF 510 (643)
Q Consensus 433 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~~k~~A~~aL~ 510 (643)
...-+...+..|+...|+.+...+.++++-....+|. .+++..+ .....++++.+.+.+.. .-....++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3344455668899999999999888888888888887 2222111 01356777777776543 344568899999
Q ss_pred HhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH-HHh-cCcHHHHHHHHhcCChHHHHHH
Q 006494 511 NLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE-IGR-LSFIETLVEIIKNGTPKNKECA 587 (643)
Q Consensus 511 nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~-i~~-~g~i~~Lv~lL~~~s~~~ke~A 587 (643)
||++.. ..|.+++..-+++.+-+++.+.++..+..++..+.||..++..-+. +++ ....+.....+....+...-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 999844 4588899888888888888888899999999999999999865443 344 3556666666665445555556
Q ss_pred HHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 588 TSVLLELGLNNSYFILAALQ-YGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 588 ~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
++++..+......+|..+.. ......++.++.++.+.++.......-
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 66666666666666553222 456788888888888888766555433
No 152
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.73 E-value=0.54 Score=51.90 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC--hhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN--PDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
...+..++..|++..++++.+|+.....|++-- -..-..+...|.| |..-|...++++.-..+.++..+...-. -
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~-~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR-F 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc-c
Confidence 457788889999999999999998888777421 0111223334443 6667777778876555555544321111 0
Q ss_pred HHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 438 RHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 438 ~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
..+. -.|.+|.|..+|++....+..+..+.+..++..........+ ...--.|+++|++.+.+.+++|...+..++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1111 357899999999999988999999888888754432211111 2233567888888888888877665554432
Q ss_pred C--C--------------CchH--------HHHh--cCcHHHHHHHhcc---CChhhHHHHHHHHHHHhCCh--hhHHHH
Q 006494 515 N--Q--------------SNKS--------RAIK--AGIIPSLLKLLED---KALGMVDEALSILQLLASHP--EGRNEI 563 (643)
Q Consensus 515 ~--~--------------en~~--------~iv~--~G~v~~Lv~lL~~---~~~~~~~~Al~iL~nLa~~~--~~~~~i 563 (643)
- + +-+. .++. .|-...|=.++.+ ++..++...+.+++-+-..- ..+.-+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 0000 0111 2323333333333 44455555555555443321 111111
Q ss_pred HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
....|.|-..|.+.++.-++.|..++.+|.-+
T Consensus 840 --y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 840 --YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred --HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 12344455555566777777777777776654
No 153
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.092 Score=59.30 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE 434 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~ 434 (643)
.......+.+.+++.++.+|..++-.+..+- ..+.......|.++.|-.++.+.++.+..+|+.+|..+...+
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 3567788999999999999999888877765 334556677899999999999889999999999999886544
No 154
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.008 Score=60.78 Aligned_cols=52 Identities=25% Similarity=0.509 Sum_probs=44.8
Q ss_pred CCCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 266 TMLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 266 ~~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
...+|+.-.||+|+.--.+|.++. ||..||..||-++..+ +..||+|+-|..
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 345678889999999999998775 6999999999999995 789999998765
No 155
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.67 E-value=0.0045 Score=57.78 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=39.8
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQIL 317 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l 317 (643)
.|.|-||.+-+..||++.|||.||..|--+-...| .+|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhh
Confidence 49999999999999999999999999988877764 7898888654
No 156
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.64 E-value=0.29 Score=55.00 Aligned_cols=257 Identities=12% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhH---HHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNR---ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
..+..++..|++.++.++.+|+..+..+++- -.++ ..+...|.| |...|...++++.-..+.+|..+... -.-
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nv-igm 874 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNV-IGM 874 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHh-ccc
Confidence 4556677788999999999999998888742 1111 123334444 77788877888765544444432210 011
Q ss_pred HHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 438 RHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 438 ~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
..+. -.+.+|.|.-+|++....++++....+..++..........+ ...--.|+.+|++.+...+++|...+.-++.
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1122 357899999999999999999999999988743322111111 2334568888899888999999888776653
Q ss_pred CCCchHHHHhcCcHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
- +--..++..|++-|+.. +.....-|.++.+.-|.-- .++|.|+.=-+.....+|.-.+.+|
T Consensus 955 a------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF---------tVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 955 A------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF---------TVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred h------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch---------hhhHHHHhhccCchhHHHHhHHHHH
Confidence 1 11133445555555432 1122233333333333211 2233333333333334444444444
Q ss_pred HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..+-..-++.....+ ..+.|.|-..+.+.+.-=+.-|..++++|.
T Consensus 1020 sf~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 444332221111111 123444445555555555666666666553
No 157
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.50 E-value=0.5 Score=54.45 Aligned_cols=100 Identities=26% Similarity=0.227 Sum_probs=49.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCc
Q 006494 448 AIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGI 527 (643)
Q Consensus 448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~ 527 (643)
.+.+=+++.++.+|..|..++..+=. ++.+ ...++++.+++.++++.+++.|+.|+.++-.. .+....+.|.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~ 167 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGL 167 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccH
Confidence 34444445555555555555544411 0111 12445555555555555556555555555321 2333344555
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 528 IPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
+..+..++.+.++.+...|+..|..+..
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 5555555555555555555555555543
No 158
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.50 E-value=0.4 Score=47.26 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCCh--hhHHHHHhcCcHHHHH
Q 006494 501 GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASHP--EGRNEIGRLSFIETLV 573 (643)
Q Consensus 501 ~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~~--~~~~~i~~~g~i~~Lv 573 (643)
-..+|+..|..++++++.|..++++..--.|..+|.. +.+-+.-.++++++.|..+. +.-.-+...++||..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3457888888899999999999999888888888753 23456778999999999873 3444556689999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhccCCHH---HHHHHHH----cCcHHHHH-HHHhhCCHHHHHHHHHHHHHhhh
Q 006494 574 EIIKNGTPKNKECATSVLLELGLNNSY---FILAALQ----YGVYEHLV-EITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 574 ~lL~~~s~~~ke~A~~~L~~L~~~~~~---~~~~~~~----~g~i~~L~-~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.+..||+..|.-|..++-.+-..+.+ .|+..-. .-++..++ .+...+++|.-+.+.++..+|++
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999888776543 2222222 12333333 34556678887777777777664
No 159
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.50 E-value=0.2 Score=57.79 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=146.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH-HHHHh
Q 006494 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK-RHIAR 442 (643)
Q Consensus 365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k-~~i~~ 442 (643)
.|++.+.++|.+.|+-|...|..=...+..+-..-.+...+..|+++|.+.+.++|..|+.+|.-|+.. .+.+ ..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 788999999999999998877532211111111112345678899999999999999999999987621 1111 111
Q ss_pred cCChHHHHHHHccCCHHHHHHHH-HHHHHccccccccchhhccCChHHHHHHccc------CChhhHHHHHHHHHHhhc-
Q 006494 443 EGAIPAIIEILQNGTNEARENSA-AALFSLSMLDENRVMVGNLNGIPPLVNLLRY------GSIRGKKDAATALFNLSI- 514 (643)
Q Consensus 443 ~g~i~~Lv~lL~~~~~~~~~~Aa-~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s------~~~~~k~~A~~aL~nLs~- 514 (643)
++.|+.-+-+|....|..+. +.....+.....-.......+++.+..-+.. ....++..++..|..+.+
T Consensus 87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 22222222233333333222 2222222222222222233344544444432 233467777777665443
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLE 593 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~ 593 (643)
..+--.. ...+....++--+.+....+...|+.+|..|+..- ++... .+.+..|++=|.. .+...-.--..+|..
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAA 239 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 2221111 33455666666666666678899999999998852 12222 2344444444432 222333334556667
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHH---hhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEIT---RCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL~~l~~ 638 (643)
+|+..+.+.-.- -..++|.+..+. ...+++.+++....|..+-+
T Consensus 240 i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 240 ICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHhcchhhcc-cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 776543321110 134678888887 67789999999998887654
No 160
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.52 Score=53.30 Aligned_cols=270 Identities=14% Similarity=0.095 Sum_probs=160.3
Q ss_pred HHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcC--CCHHHHHHHHHHHHhccc-Chhh
Q 006494 362 EICSLIQNLSSSQL-NIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSY--PDSKIQEHTVTALLNLSL-DETN 436 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~-~~~~ 436 (643)
.+..|+.......+ .++..++..|+.++.+ -........ +.++-.++.-... ++..++-.|..+|.|--. -..|
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 44455555544433 3677788999988843 333333222 2233334443332 366788889999988321 1111
Q ss_pred HHHHHhc-CChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 437 KRHIARE-GAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 437 k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
-..=.+. -.+..+++.-.+++.+++..|..+|..+.. ..+.-..-.....+..-+.-+++.++++...|+..=.++|.
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 1111111 234445555567788899888888888753 22322211222234444555678888888877766665653
Q ss_pred CC----------------CchHHHH---hcCcHHHHHHHhccCC-------hhhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494 515 NQ----------------SNKSRAI---KAGIIPSLLKLLEDKA-------LGMVDEALSILQLLASHPEGRNEIGRLSF 568 (643)
Q Consensus 515 ~~----------------en~~~iv---~~G~v~~Lv~lL~~~~-------~~~~~~Al~iL~nLa~~~~~~~~i~~~g~ 568 (643)
.. +....+. -.+++|.|+++|...+ -.....|-.+|.-++.. +....
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~I 361 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDI 361 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccc
Confidence 11 0111111 1478899999996521 12334444555444432 22345
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 569 IETLVEIIK----NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 569 i~~Lv~lL~----~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
++..+.+++ +.+-+.++.|+.++..+-.+....+..-+..+++|.++.++.+.+--+|+-+.+.|-.+.++
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 555555554 55667788899999888887766666666678999999999988889999999999888764
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.63 Score=52.22 Aligned_cols=263 Identities=14% Similarity=0.109 Sum_probs=140.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC--HHHHHHHHHHHHhcc-cChh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD--SKIQEHTVTALLNLS-LDET 435 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs-~~~~ 435 (643)
.+..+..+.+.|.+.++--..-|+..+.+.. +.+++..+.. -|+ ++|.+++ .-++..|+-+|+.|- ..++
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 3456667777888888888888999888875 3445544432 334 5665543 234444444444443 2222
Q ss_pred hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHcccC-------------Chh
Q 006494 436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLLRYG-------------SIR 500 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~s~-------------~~~ 500 (643)
.+-..+....++++|.+.+..+...+...+-.|+... +++..+.. ++..|....... .+=
T Consensus 182 ---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 182 ---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred ---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChH
Confidence 1112356788888888777666666666666665322 23322211 222222222111 123
Q ss_pred hHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHhcc--CChh-----hHHHHHHHHHHHhCChhhHHHHHhcCcHHH
Q 006494 501 GKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLED--KALG-----MVDEALSILQLLASHPEGRNEIGRLSFIET 571 (643)
Q Consensus 501 ~k~~A~~aL~nLs~--~~en~~~iv~~G~v~~Lv~lL~~--~~~~-----~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~ 571 (643)
.....+.+|.+.=. ++..+.++.+ ++..++....+ .... .+...+-=.-+|+.+-+.-..+.. .++..
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~ 333 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQ 333 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHH
Confidence 34455555555532 1222333322 23333333321 1111 122233334455555333333332 46788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHhhhc
Q 006494 572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l~~~ 639 (643)
|..+|.+.....|..|+..++.||+.... ..++... ...++..+. ..+.-++++|..+|..|++.
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 88888888888888888888888887432 2222222 455555555 55777888888888888764
No 162
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1.1 Score=50.50 Aligned_cols=218 Identities=15% Similarity=0.199 Sum_probs=147.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChh-hHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD-NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~ 436 (643)
.++-.+-++.+|+++-+-+|.+|+-.+..+.-..++ .|. ++|.|+.-|..+|+.+|..|+.+++.|+ .++.|
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 356677888999999999999998877655433333 343 4588999999999999999999999998 56666
Q ss_pred HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCC-hhhHHHHHHHHH--Hh
Q 006494 437 KRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKDAATALF--NL 512 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~~k~~A~~aL~--nL 512 (643)
--.+ -|.+.++|.+. +.-..........+|+-.+. .+| ...+++|..++.+.. ......++.++. |+
T Consensus 216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 5433 35666777543 22233334555566654332 111 246799999998764 234444444433 44
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
+....+....+.. +++.|-.++.+.++.+.-.++-++..+... +....+. -..++..|.+.++.+|-.|+..|
T Consensus 287 s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 287 SSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred ccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHH
Confidence 4444455555544 678888888888888888788777777663 4333222 34567888889999999999999
Q ss_pred HHhccC
Q 006494 592 LELGLN 597 (643)
Q Consensus 592 ~~L~~~ 597 (643)
..+...
T Consensus 361 ~gmVsk 366 (877)
T KOG1059|consen 361 YGMVSK 366 (877)
T ss_pred HHHhhh
Confidence 887764
No 163
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.34 E-value=0.065 Score=51.74 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcccChhhHHHHHh----------------cCChHHHHHHHccC------CHHHHHHHHHHHHHccc
Q 006494 416 DSKIQEHTVTALLNLSLDETNKRHIAR----------------EGAIPAIIEILQNG------TNEARENSAAALFSLSM 473 (643)
Q Consensus 416 ~~~~~~~a~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~ 473 (643)
+......++.+|.||+..+.....+.. ..++..|+..+..| ...-....+.++.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556678888899888777764441 12677777777552 23456788999999999
Q ss_pred cccccchhhcc--CC--hHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhc---CcHHHHHHHhc
Q 006494 474 LDENRVMVGNL--NG--IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA---GIIPSLLKLLE 536 (643)
Q Consensus 474 ~~~~k~~i~~~--g~--i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~---G~v~~Lv~lL~ 536 (643)
..+.|..+.+. +. +..|+.++.+.+.--+.-++.+|.|+|...+.+..+... +++|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999874 34 677888777777777788899999999999998888773 45555555444
No 164
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.012 Score=56.99 Aligned_cols=53 Identities=19% Similarity=0.465 Sum_probs=46.8
Q ss_pred CcccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494 271 HEFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 324 (643)
..|.||+|.+.+++.+ +-+|||.++..|.++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 6799999999999854 3489999999999999986 678999999999888775
No 165
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.25 E-value=0.38 Score=48.15 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHH-------hcCCC-----HHHHHHHHHHHHhcccChhhHHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQL-------LSYPD-----SKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~l-------L~~~~-----~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
+++.|..|+.+|..--...++-...+-. .|.+..|+.= ++.+. ..-..+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677888888776543222333333322 4666655442 22221 123456677777778999999999
Q ss_pred HhcCChHHHHHHHccCC-----HHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 441 AREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
.++...--|..+|...+ +..|..+.+++..|...++ .-..+...+.+|..+..+..|+.-.|..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887767777776432 4578899999999986544 4555667899999999999999999999999998876
Q ss_pred cCCCch-------HHHHh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHHHh
Q 006494 514 INQSNK-------SRAIK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGRNEIGR 565 (643)
Q Consensus 514 ~~~en~-------~~iv~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~ 565 (643)
.++..- .++-. ..++..++.-+ .++++.+....+.+-..|+.++.++.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 655432 22222 23444444444 447889999999999999999999998864
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.07 E-value=0.07 Score=46.97 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 006494 360 IEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNL 430 (643)
Q Consensus 360 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL 430 (643)
-..+..|++.|. +.++.+..-|+..|..+.+..|..|..+.+.|+-..+..++.++|++++..|+.++-.+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 367889999994 45667777899999999999999999998999999999999999999999999887654
No 167
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.07 E-value=0.044 Score=41.23 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc
Q 006494 417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSL 471 (643)
Q Consensus 417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L 471 (643)
|.++..|+.+|.+++........-.....++.|+.+|++.+..+|.+|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5688999999999886655444445556899999999998889999999999864
No 168
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.03 E-value=0.03 Score=42.14 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHH
Q 006494 499 IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLL 553 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nL 553 (643)
+.++..|+.+|.+++........-....+++.|+.+|.++++.+...|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578899999999887666655556678999999999988889999999999875
No 169
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.99 E-value=0.02 Score=56.30 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=38.4
Q ss_pred CcccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCCCCcc
Q 006494 271 HEFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPKTGQI 316 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~ 316 (643)
-+++|||+......||+ ..|||.|+|..|+..+... ...||+-+-.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 46899999999999998 4799999999999999852 3459995544
No 170
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.014 Score=56.63 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=33.5
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS 305 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~ 305 (643)
.+-+.-+|.+|++-.+|||+.+.||.|||+||.+++-.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 34455589999999999999999999999999999874
No 171
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.83 E-value=0.64 Score=52.38 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=102.9
Q ss_pred hHHHHHHcccCChhhHHHHHHHHHHhhcCCCch---HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNK---SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 487 i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~---~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
+...+..|++.++.++..|+..+..|+.--.++ ..|...|+ .|.+.|....+++.-..+.+++.++...+.....
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 445566788999999999999998887533332 22223443 3677787777777766666666665432211111
Q ss_pred H-hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 564 G-RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 564 ~-~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
- -.+.+|.|..+|++..+.++++++..+..+|..++++.-.-.=.-+---|++++...+...++.|...+-.+.+
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0 13789999999999999999999999999999988754321111233346677778888899999888776654
No 172
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.81 E-value=0.71 Score=53.23 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=99.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
-.+.+++.+.+.|.+.++-.-.-|...++.+|+-... ++..+.+=|.++++.+|..|+++|..+-..+ +
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e-----l- 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE-----L- 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH-----H-
Confidence 4555566666666666555555566667666522211 3566777888899999999999887653221 1
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
-..+++++.+.+.++++.+|.+|+-+++++=.. .+....+.|.+..+..++.+.++.++.+|+.+|..+.-
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 123678888999999999999999999887432 33445567788888899989999999999999988754
No 173
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.77 E-value=0.91 Score=47.47 Aligned_cols=211 Identities=19% Similarity=0.184 Sum_probs=113.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHcccc---ccccchhhc
Q 006494 409 VQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSML---DENRVMVGN 483 (643)
Q Consensus 409 v~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~i~~ 483 (643)
+..+.......++.++..+.++....-....+. ..-.+..+.+.++.|..+-+..|+.++.-|+.. ......+.
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~- 127 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF- 127 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-
Confidence 334444456777777777766543322222222 223577888888888766666677766666543 12222332
Q ss_pred cCChHHHHHHcccCCh--hhHHHHHHHHHHhhcCCC-chHHHHh-cCcHHHHHHH--hcc-C---------ChhhHHHHH
Q 006494 484 LNGIPPLVNLLRYGSI--RGKKDAATALFNLSINQS-NKSRAIK-AGIIPSLLKL--LED-K---------ALGMVDEAL 547 (643)
Q Consensus 484 ~g~i~~Lv~lL~s~~~--~~k~~A~~aL~nLs~~~e-n~~~iv~-~G~v~~Lv~l--L~~-~---------~~~~~~~Al 547 (643)
....|.|...+.+++. ..+..++.+|.-++.... .-..+.+ ...+..+... +.. + ++.++..|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 2466888888877643 444455556665554211 1111110 1223322111 221 1 235777777
Q ss_pred HHHHHHhCC-hhh-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH---HHcCcHHHHHHHHhhC
Q 006494 548 SILQLLASH-PEG-RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA---LQYGVYEHLVEITRCG 621 (643)
Q Consensus 548 ~iL~nLa~~-~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~---~~~g~i~~L~~ll~~g 621 (643)
..-+-|... +.. ..... ...++.|+.+|.+.+..+|-.|-.+|.-|........... -...++..|..|...+
T Consensus 208 ~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 666666655 332 22222 3579999999999999999888777766543222100000 1123456666666554
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.75 E-value=3.6 Score=48.34 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=144.8
Q ss_pred HHhhCChHHHHHHhcCC-----CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHc----cCC----HHHHHHHH
Q 006494 399 IANNGGIRPLVQLLSYP-----DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ----NGT----NEARENSA 465 (643)
Q Consensus 399 i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~~~~~~Aa 465 (643)
+.+.|++..++.++.+- +.+.....+..|...+.-..||..+.+.|+++.|++.|. .+. .+.-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45679999999988752 334555566666666778999999999999999999885 222 34444444
Q ss_pred HHHHHccc---cccccchhh----------ccCChHHHHHHcccC----ChhhHHHHHHHHHHhhcCCCchHHH-HhcCc
Q 006494 466 AALFSLSM---LDENRVMVG----------NLNGIPPLVNLLRYG----SIRGKKDAATALFNLSINQSNKSRA-IKAGI 527 (643)
Q Consensus 466 ~~L~~Ls~---~~~~k~~i~----------~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~en~~~i-v~~G~ 527 (643)
.++-.|.. .+....... ...-+..|++.+.+. ++......+.+|-+|+...+.+... ++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 44443321 111111111 112366777776654 4667777788888998765554333 321
Q ss_pred HHHHHHHh--ccCChhhHHHHHHHHHHHhCC-------hhhHHHHHhcCcHHHHHHHHhc--------CChHHHH-----
Q 006494 528 IPSLLKLL--EDKALGMVDEALSILQLLASH-------PEGRNEIGRLSFIETLVEIIKN--------GTPKNKE----- 585 (643)
Q Consensus 528 v~~Lv~lL--~~~~~~~~~~Al~iL~nLa~~-------~~~~~~i~~~g~i~~Lv~lL~~--------~s~~~ke----- 585 (643)
+.+.+++= ......--...+..++.++.. ..-+..|++.|++...+.+|.. .+++.++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 22222211 111111112235555555543 2358888999999988888864 3444554
Q ss_pred ---HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhhc
Q 006494 586 ---CATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 586 ---~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~~ 639 (643)
.++.+|.-||.+....... +..++++.|..|-+.. +..+-..|..+|..|.+.
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 4778888899876654443 5567787777776544 566777888888888764
No 175
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.49 Score=52.71 Aligned_cols=219 Identities=13% Similarity=0.141 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh------hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP------DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL- 432 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~------~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~- 432 (643)
+......++.++..+.++|..|+..+...++..+ .+...+.+ .+...++..+.+....++..|..+|..+-.
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 4567888899999899999999887776655442 11222222 356678888888888888888888765431
Q ss_pred ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHH-HHHHHc--c------------ccccccchhhccCChHHHHHHcccC
Q 006494 433 DETNKRHIAREGAIPAIIEILQNGTNEARENSA-AALFSL--S------------MLDENRVMVGNLNGIPPLVNLLRYG 497 (643)
Q Consensus 433 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa-~~L~~L--s------------~~~~~k~~i~~~g~i~~Lv~lL~s~ 497 (643)
+++.-.+-.+.. ++.-++.. ....... ....+. | .+++.-..|..+|+--+++.=|.++
T Consensus 312 See~i~QTLdKK----lms~lRRk--r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE 385 (823)
T KOG2259|consen 312 SEEIIQQTLDKK----LMSRLRRK--RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE 385 (823)
T ss_pred HHHHHHHHHHHH----Hhhhhhhh--hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH
Confidence 111111111111 11111100 0001111 111111 0 1233455677889989999988888
Q ss_pred ChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH
Q 006494 498 SIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII 576 (643)
Q Consensus 498 ~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL 576 (643)
-.+++++|+..++.|+.+ +....+ ++..|+.++.++...+...|+.+|..++.+-.. +..-++.+++-|
T Consensus 386 f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i-----~eeql~~il~~L 455 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI-----REEQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee-----cHHHHHHHHHHH
Confidence 889999999999999874 444444 467799999888888999999999999887322 334577888888
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 006494 577 KNGTPKNKECATSVLLELG 595 (643)
Q Consensus 577 ~~~s~~~ke~A~~~L~~L~ 595 (643)
.+.++++|+..-..|.+.-
T Consensus 456 ~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 456 EDRSVDVREALRELLKNAR 474 (823)
T ss_pred HhcCHHHHHHHHHHHHhcC
Confidence 8888888887766654433
No 176
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.59 E-value=0.17 Score=43.31 Aligned_cols=64 Identities=28% Similarity=0.336 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhccc-ChhhHHHHHh
Q 006494 379 RDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLSL-DETNKRHIAR 442 (643)
Q Consensus 379 ~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~-~~~~k~~i~~ 442 (643)
...++.|.+++..++.++..+.+.|+++.++..... .+|-+++.|+.++.||.. +++|+..|.+
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 455778899999999999999999999999998764 478999999999999985 5788887763
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.55 E-value=0.015 Score=61.15 Aligned_cols=44 Identities=23% Similarity=0.515 Sum_probs=36.8
Q ss_pred cccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 272 EFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
--+||+|++-|-+-| ++.|.|+|.-.|+.+|+.. +||+||--..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 348999999998876 4689999999999999864 7898876554
No 178
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.025 Score=59.08 Aligned_cols=43 Identities=26% Similarity=0.615 Sum_probs=38.5
Q ss_pred cccCccCcccccC---CeecCCcccccHHhHHHHHhcCC--CCCCCCC
Q 006494 272 EFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNH--KTCPKTG 314 (643)
Q Consensus 272 ~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~--~~cP~~~ 314 (643)
-|.|||..+--+| |+.+.|||..++.+|.+-..+|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999998886 99999999999999999999887 6799883
No 179
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=1.4 Score=50.41 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=50.6
Q ss_pred HHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhc---CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH---
Q 006494 532 LKLLEDKALGMVDEALSILQLLASHPEGRNEIGRL---SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA--- 605 (643)
Q Consensus 532 v~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~---g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~--- 605 (643)
+++|..++++..+....+|+.++.+.+.-..+..+ .+|..+..+. .+...++.|+.+|...-.+...+..-+
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 44455556666666677777777653321111111 2333333322 223345555555555444332211110
Q ss_pred -----HH--cCc----HHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 606 -----LQ--YGV----YEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 606 -----~~--~g~----i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++ ..+ -..+++-+.+.++-.|++|.+++..|-+
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 00 001 2234455666777888888888877654
No 180
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.32 E-value=0.016 Score=60.35 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=31.1
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHh
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLN 304 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~ 304 (643)
.+++.||||...++||+|++|||..|+.|-..-+-
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 36899999999999999999999999999775543
No 181
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.78 Score=52.11 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=98.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
..+.+++.+...|.+...-.---+.+.++..++.. .+++..+++=..++++.++..|++.+.-+-.+.-.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~----- 119 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT----- 119 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH-----
Confidence 45555666655554433333334445554444322 34566677777788999999998887665432211
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e 517 (643)
.....++.+.++++++.+|..++....++= +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.
T Consensus 120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred -HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 125678889999999999987777777663 3455556668999999999998899999999999999986444
No 182
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=1.1 Score=53.19 Aligned_cols=228 Identities=16% Similarity=0.178 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHHhhhhChhhHHHHHhh--CChHHHHHHhcCCCHHHHHHHHHHHHhccc--ChhhHHHHHhcCChH
Q 006494 372 SSQLNIKRDSVMKIRMLSKENPDNRILIANN--GGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKRHIAREGAIP 447 (643)
Q Consensus 372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~k~~i~~~g~i~ 447 (643)
+.+..+|.++-+.|..++.. +......... ..-..|...+++.+...+...+.+|..|-. +.+....+.. .|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence 45788999999999988854 3333222211 122334445555556666666666655532 2233444333 355
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccc----cccccchhhccCChHHHHHHcccC--ChhhHHHH--HHHHHHhhcCCCch
Q 006494 448 AIIEILQNGTNEARENSAAALFSLSM----LDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDA--ATALFNLSINQSNK 519 (643)
Q Consensus 448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A--~~aL~nLs~~~en~ 519 (643)
-++-.++..+...|.+|-.+|..+.. .+...+. ....|...+..+..| .......| +.++..+... -
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---F 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---H
Confidence 55555577788999999999998862 1111111 123667777777655 22222222 3444444432 2
Q ss_pred HHHHhc----CcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 520 SRAIKA----GIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 520 ~~iv~~----G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
..+++. +.+..+...|.+.++++...|+..+..++.. |+..-.-.....++.+..++++.....+...-..|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222333 3445555556678899999999999999886 55443333345788999999888888888888888888
Q ss_pred ccC-CHHHHHHHHH
Q 006494 595 GLN-NSYFILAALQ 607 (643)
Q Consensus 595 ~~~-~~~~~~~~~~ 607 (643)
++. +.+.......
T Consensus 897 irkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 897 IRKFGAEELESFLP 910 (1176)
T ss_pred HHHhCHHHHHhhCH
Confidence 864 3344444433
No 183
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.12 E-value=3.1 Score=45.91 Aligned_cols=264 Identities=9% Similarity=0.025 Sum_probs=139.5
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh----cCC-CHHHHHHHHHHHHhcccChhhHHHHHh
Q 006494 368 QNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL----SYP-DSKIQEHTVTALLNLSLDETNKRHIAR 442 (643)
Q Consensus 368 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL----~~~-~~~~~~~a~~~L~nLs~~~~~k~~i~~ 442 (643)
+-|.+..+.....|...+..++... .-.|..|-|...+ ..+ ....+..++.++.+.+....-...+..
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 4455555555566666666555321 1134444444433 333 345677888999998765544444443
Q ss_pred cC-C-hHHHHHHHccC-CHHHHHHHHHHHHH-ccccccccchhhccC-ChHHHHHHcccCChhhHHHHHHHHHHhhc-CC
Q 006494 443 EG-A-IPAIIEILQNG-TNEARENSAAALFS-LSMLDENRVMVGNLN-GIPPLVNLLRYGSIRGKKDAATALFNLSI-NQ 516 (643)
Q Consensus 443 ~g-~-i~~Lv~lL~~~-~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~ 516 (643)
.+ + +..+..-++++ +..+|..|..+|.+ |-+...+-..=.+.+ .+......-+..+.+++..|..+|..+-. +-
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 22 2 33333455665 56778888888887 543333222222222 22333444445566777777777665543 33
Q ss_pred CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHH----------------hcCcHHHHHHHHhc-
Q 006494 517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIG----------------RLSFIETLVEIIKN- 578 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~----------------~~g~i~~Lv~lL~~- 578 (643)
..-.-.++.-......+.+++++.++.-.|+..-..+|.. .++.-.+. -.+++|.|+.+|..
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 3333334443444445555666666666665555444432 11111110 02355666666542
Q ss_pred --------------------------------------------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHH
Q 006494 579 --------------------------------------------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHL 614 (643)
Q Consensus 579 --------------------------------------------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 614 (643)
.+-..++.|+.++..+-.+..+.+..-.-..++|.+
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i 413 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI 413 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence 233445556666666555543333333334567777
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 615 VEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 615 ~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
...+.+..-.+|..+++.+-.+..
T Consensus 414 ~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 414 ENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred HHhcccceeehhhHHHHHHHHHHH
Confidence 777777777888888888877754
No 184
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=2.3 Score=48.36 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=121.2
Q ss_pred hHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSS-------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
-...+|.|++.|.. ++|.....|-.+|..++.. .+..|+. .++|++-.-++++|+.-++.|+.++...-
T Consensus 317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSIL 392 (859)
T ss_pred HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence 45678888888864 2444555666667666632 2223333 35555556778899999999999988766
Q ss_pred cChh-hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cCChhhHHHHHH
Q 006494 432 LDET-NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YGSIRGKKDAAT 507 (643)
Q Consensus 432 ~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~~~~~k~~A~~ 507 (643)
..++ .+..=...+++|.++.++.+.+.-++..+++++..++..-. ..+...-..+.++..+- ++.+++-.++++
T Consensus 393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~DePrva~N~CW 470 (859)
T KOG1241|consen 393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLNDEPRVASNVCW 470 (859)
T ss_pred cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhhCchHHHHHHH
Confidence 5543 33332356789999999998888889999999999873222 23333223333333332 235788889999
Q ss_pred HHHHhhc--CC---Cc-hHHHHhcCcHHHHHHHh----cc---CChhhHHHHHHHHHHHhCC-hhhHHHH
Q 006494 508 ALFNLSI--NQ---SN-KSRAIKAGIIPSLLKLL----ED---KALGMVDEALSILQLLASH-PEGRNEI 563 (643)
Q Consensus 508 aL~nLs~--~~---en-~~~iv~~G~v~~Lv~lL----~~---~~~~~~~~Al~iL~nLa~~-~~~~~~i 563 (643)
++.+|+. +. .+ ...... -..+.++.-| .. ....+...|..+|..|..+ ++....+
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999983 11 11 111111 1222333322 11 2335677788899988887 4444444
No 185
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.06 E-value=1.3 Score=51.48 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=124.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHH-hcCCCHHHHHHHHH---HHHhcccCh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQL-LSYPDSKIQEHTVT---ALLNLSLDE 434 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~---~L~nLs~~~ 434 (643)
+...+..+++.|...+.++|..|++.+.-|++.-.+.+..- .++.|+.- ++..+..--..++. .+.|+.
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~--- 117 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLP--- 117 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCC---
Confidence 45789999999999999999999999998885443333221 22334333 32221111122222 233333
Q ss_pred hhHHHHHhcCChHHHHHHHccC-----C-HHHHHHHHHHHHHccccccccchh--hccCChHHHHHHcccCChhhHHHHH
Q 006494 435 TNKRHIAREGAIPAIIEILQNG-----T-NEARENSAAALFSLSMLDENRVMV--GNLNGIPPLVNLLRYGSIRGKKDAA 506 (643)
Q Consensus 435 ~~k~~i~~~g~i~~Lv~lL~~~-----~-~~~~~~Aa~~L~~Ls~~~~~k~~i--~~~g~i~~Lv~lL~s~~~~~k~~A~ 506 (643)
...........++.++..|..+ + ..++-.+.-.+...-.. .-..+ ...+.+..++.-+.+....+++.|+
T Consensus 118 P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr--~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai 195 (1233)
T KOG1824|consen 118 PSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR--FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAI 195 (1233)
T ss_pred CccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh--hcccCcchHHHHHHHHhhcccChHHHHHHHHH
Confidence 1111122233444444444332 2 22333333333222100 00001 1234455566666676778999999
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH---hcCChH
Q 006494 507 TALFNLSINQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII---KNGTPK 582 (643)
Q Consensus 507 ~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~ 582 (643)
.+|..|++...+ ..-.+++..|++=|... .......-..+|..++.....|.----...+|.+..+. ...+++
T Consensus 196 ~~l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDE 272 (1233)
T KOG1824|consen 196 TALGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDE 272 (1233)
T ss_pred HHHHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHH
Confidence 999999874322 12234555566656442 22334444566666666443332211135678888888 557788
Q ss_pred HHHHHHHHHHHhccCCHHH
Q 006494 583 NKECATSVLLELGLNNSYF 601 (643)
Q Consensus 583 ~ke~A~~~L~~L~~~~~~~ 601 (643)
.+|..+.+|..+-...+..
T Consensus 273 LrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHHHHhChhh
Confidence 9999999998887766543
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.86 E-value=1.6 Score=43.81 Aligned_cols=136 Identities=22% Similarity=0.223 Sum_probs=95.9
Q ss_pred ChhhHHHHHHHHHHhhcCCCc----hHHHHh-cCcHHHHHHHhcc-----CCh-------hhHHHHHHHHHHHhCChhhH
Q 006494 498 SIRGKKDAATALFNLSINQSN----KSRAIK-AGIIPSLLKLLED-----KAL-------GMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 498 ~~~~k~~A~~aL~nLs~~~en----~~~iv~-~G~v~~Lv~lL~~-----~~~-------~~~~~Al~iL~nLa~~~~~~ 560 (643)
+++.++.| |..|+...+. ...+.. -|.+..|++=+.+ ..+ .-+-.|+++|-.+|+|++.|
T Consensus 8 ~~~~Re~A---l~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENA---LLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHH---HHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHH---HHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 34455555 5555554332 344444 6777777655433 111 22456888999999999999
Q ss_pred HHHHhcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 561 NEIGRLSFIETLVEIIKNGT-----PKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
..+.++...-.|..+|...+ +..|-.+++++..|...+ ++....+++..++|..++.+..|++-.|-.|..++.
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlq 164 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQ 164 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998888888887644 456778889999998765 456666778899999999999999999999999988
Q ss_pred Hh
Q 006494 635 HM 636 (643)
Q Consensus 635 ~l 636 (643)
.+
T Consensus 165 KI 166 (262)
T PF04078_consen 165 KI 166 (262)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 187
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.84 E-value=2.2 Score=43.75 Aligned_cols=220 Identities=17% Similarity=0.144 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhhHHHHHh-cCChHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAI 449 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~k~~i~~-~g~i~~L 449 (643)
++-.+.-|+..+.++. -.++.|..+ ++...-..++.+++.. +.++|.+.+-+++-|+.++.....|-+ ...+..+
T Consensus 162 ~~lTrlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3346677888888887 456666665 5555666788888753 678899999999999988766644432 2356677
Q ss_pred HHHHccCC-HHHHHHHHHHHHHccccccccchhhc---cCChHHHHHHcccC---ChhhHHH---------------HHH
Q 006494 450 IEILQNGT-NEARENSAAALFSLSMLDENRVMVGN---LNGIPPLVNLLRYG---SIRGKKD---------------AAT 507 (643)
Q Consensus 450 v~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~---~g~i~~Lv~lL~s~---~~~~k~~---------------A~~ 507 (643)
+.+.+... ..+-..+++++.++.. ...|..|.. .|-+.+-+++|..+ +.+...+ ...
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77776542 4455567788888764 223334433 45566666666543 2222211 100
Q ss_pred --HHHHh-----hcCC---------CchHHHHh--cCcHHHHHHHhccCChh-hHHHHHHHHHHHhC-ChhhHHHHHhcC
Q 006494 508 --ALFNL-----SINQ---------SNKSRAIK--AGIIPSLLKLLEDKALG-MVDEALSILQLLAS-HPEGRNEIGRLS 567 (643)
Q Consensus 508 --aL~nL-----s~~~---------en~~~iv~--~G~v~~Lv~lL~~~~~~-~~~~Al~iL~nLa~-~~~~~~~i~~~g 567 (643)
-+..| +..+ .|..++.+ -..+..|.++|...++. ...-|+.=+..+.. .|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 01111 2222 13344444 34788899999875554 34445655666665 499999999999
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 568 FIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
+=..++.++.+.++++|-.|+.++..+-
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999886543
No 188
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.032 Score=59.30 Aligned_cols=51 Identities=14% Similarity=0.381 Sum_probs=39.6
Q ss_pred CCCcccCccCcccc-----------------cCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIM-----------------TDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m-----------------~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
+....-|+||+.-. ++-+++||.|.|.+.|+++|.+.-.-.||.||.+|+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44556799995422 1356679999999999999999645689999999864
No 189
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.72 E-value=0.92 Score=49.57 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=111.8
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCCh----hhHHHHHHHHHHhhcCCCchH
Q 006494 445 AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSI----RGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~----~~k~~A~~aL~nLs~~~en~~ 520 (643)
....+.+++.+|+...+..|...|.+|+.+......+....++..|.+++.+|.. ......+.++..|-.+.-.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566788889999888888999999999988888888888999999999998864 334444455544433322222
Q ss_pred HHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 521 RAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
..+.-.+|.....+..- .+..+...|+.+|.++..+.. -+..+.+.--+..|+..+..++...+.+|.+.+-.+-..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 22333344444444422 345678889999999999865 666677777799999999999988888888888777654
Q ss_pred C
Q 006494 598 N 598 (643)
Q Consensus 598 ~ 598 (643)
.
T Consensus 244 a 244 (713)
T KOG2999|consen 244 A 244 (713)
T ss_pred C
Confidence 3
No 190
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=2.7 Score=47.96 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=140.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhc
Q 006494 364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE 443 (643)
Q Consensus 364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~ 443 (643)
..|.++|.+........|.+.|-.+...+.+... ..|.+|+...+.+.+++.-.---|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 4577788888888889998876554434433222 3567888888888998877655555545444443322
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHH
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRA 522 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~i 522 (643)
-|..+=+-|++++..+|..|..+|..+ |..+...=++-++-+...+.++.+++.|+.||--|-+ .++.+..+
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 245566678889999997777777655 2222222222333344456688999999999999876 44455554
Q ss_pred HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+ ..+-.+|.+.++.++-.|+.+...+|-+ .-+.| .+-...|+.+|...++..|-.....|..-|++
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 3 4456667788888888888877776653 33333 24578888988888888888888888887764
No 191
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.65 E-value=1.4 Score=48.73 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=94.6
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH---HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccch
Q 006494 404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK---RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVM 480 (643)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k---~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~ 480 (643)
.|..++.+|+++.+.++++|+.....|+.-=.++ ..+..-|. .|.+-|....+++.-....++..+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3556777888888999999988777665321111 11223332 244555556677776666666666544333221
Q ss_pred h-hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc----hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 481 V-GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN----KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 481 i-~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en----~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
- --.|.+|.|..+|++....+..+.+..+..+|.+.+. |..| .+--.|+++|.+.+.++...|...+..++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 1257899999999999999999998888888875443 3333 233457777877777887777776666654
No 192
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.64 E-value=1.1 Score=47.34 Aligned_cols=197 Identities=14% Similarity=0.130 Sum_probs=142.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHH-----HHHhh--CChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRI-----LIANN--GGIRPLVQLLSYPDSKIQEHTVTALLNLSLD 433 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 433 (643)
+.+..|+..|..-+-+.+..++....++.+.....+. ++..+ ..+..|+.-- +++++--.+-..|.....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 4677888888888888888888888888777655543 23222 2333333333 3566777788888888888
Q ss_pred hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhc---cCChHHHHHHcccCChhhHHHHHHHH
Q 006494 434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGN---LNGIPPLVNLLRYGSIRGKKDAATAL 509 (643)
Q Consensus 434 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~---~g~i~~Lv~lL~s~~~~~k~~A~~aL 509 (643)
+.....+.....+..+.+.+..++-++...|..++..|-.. ...-..... ...+.....+|.+++--+++.++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 88888888888888899999999999998899888886433 222222222 24677888999999999999999999
Q ss_pred HHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494 510 FNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG 559 (643)
Q Consensus 510 ~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~ 559 (643)
..|..++.|-.-|.. ..-+..+..+|.+.+..++-+|..+..-.+.+|..
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 999999999665543 45678888999999999999999999988887643
No 193
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.59 E-value=0.067 Score=39.53 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=25.1
Q ss_pred cccCccCcccccCCeec-CCccc--ccHHhHHHHH-hcCCCCCCCCCcc
Q 006494 272 EFLCPVTLEIMTDPVIV-ATGQT--YERESIQRWL-NSNHKTCPKTGQI 316 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~-~~g~t--~~r~~I~~w~-~~~~~~cP~~~~~ 316 (643)
.+.|||+...|.-||-- .|-|. ||-...-+.. ..+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999974 57664 8875444444 3556789999864
No 194
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=3.1 Score=46.96 Aligned_cols=160 Identities=13% Similarity=0.215 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHhccc--ChhhHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHc---c-ccccccchhhcc
Q 006494 415 PDSKIQEHTVTALLNLSL--DETNKRHIAREGAIPAIIEILQN----GTNEARENSAAALFSL---S-MLDENRVMVGNL 484 (643)
Q Consensus 415 ~~~~~~~~a~~~L~nLs~--~~~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~L---s-~~~~~k~~i~~~ 484 (643)
+.+..+.+.+++|.+... ++..+..+.+ .++.++...+. .++.-....-++||.. + ..|...+.+.
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-- 328 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-- 328 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--
Confidence 467788888888888753 3344444433 34444444432 1222222222344432 2 3344444444
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
.++..|-++|.+.....+..|+..+..|++.......+-.. ...++..|+ +.+-.++..|+..|..+|.....+ .
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-~- 404 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-Q- 404 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-H-
Confidence 36788888888888888999999999998885555444333 667777787 567788999999999998854333 2
Q ss_pred HhcCcHHHHHHHHhcCChHHHHH
Q 006494 564 GRLSFIETLVEIIKNGTPKNKEC 586 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~~~ke~ 586 (643)
+|.-|+..|.+.+...||.
T Consensus 405 ----IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 405 ----IVAELLQYLETADYSIREE 423 (938)
T ss_pred ----HHHHHHHHHhhcchHHHHH
Confidence 3445666666666666654
No 195
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=2.3 Score=49.79 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=152.9
Q ss_pred HHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCC----
Q 006494 383 MKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGT---- 457 (643)
Q Consensus 383 ~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~---- 457 (643)
..|-.+.|.+.+|...+.++.++..++.++-++ +-+...++++.-|. .++. + +....+-.++..|++|-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpk-q---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPK-Q---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcc-c---ccHHHHHHHHHHHHhcceecc
Confidence 456677888999999999998888888877543 23333344443332 2221 0 11223455666676642
Q ss_pred --------HHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHccc----------CChhhHHHHHHHHHHh-----h
Q 006494 458 --------NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRY----------GSIRGKKDAATALFNL-----S 513 (643)
Q Consensus 458 --------~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s----------~~~~~k~~A~~aL~nL-----s 513 (643)
........++++.+...+ ..+..+++.+++..|...|.. ++.-+...-...|+.+ |
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 123344556777765444 578888999999888877631 1222222333344332 3
Q ss_pred cCCCchHHHHh-------------cC---------cHHHHHHHhcc--CChhhHH--HHHHHHHHHhCC------h----
Q 006494 514 INQSNKSRAIK-------------AG---------IIPSLLKLLED--KALGMVD--EALSILQLLASH------P---- 557 (643)
Q Consensus 514 ~~~en~~~iv~-------------~G---------~v~~Lv~lL~~--~~~~~~~--~Al~iL~nLa~~------~---- 557 (643)
.++.|+.++-. .| +|..|.++--. ..+.+.. .|++-+-.+-.+ |
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 46666655422 23 22222222110 1111111 122222222111 1
Q ss_pred -hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHH---hhCCHHHHHHHHHHH
Q 006494 558 -EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEIT---RCGTNRGQRKANSLL 633 (643)
Q Consensus 558 -~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL 633 (643)
..++.|..+|++..|+..+-...|..+-.-+..|-.+++.++.........|+++.|++++ .+|+..--..|.+++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 1466778889999999988888999888888999999998887777777789999999886 467777777788888
Q ss_pred HHhhhccCCC
Q 006494 634 QHMSKREHIP 643 (643)
Q Consensus 634 ~~l~~~~e~p 643 (643)
.+|+-+.-.|
T Consensus 978 emLgayrlsp 987 (2799)
T KOG1788|consen 978 EMLGAYRLSP 987 (2799)
T ss_pred HHHhhccCCc
Confidence 8777655443
No 196
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.25 E-value=0.35 Score=47.64 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhCChhhHHHHHhcCcHH-------HHHHHHh-cCChHHHHHHHHHHHHhccCCHHHH-HHHHHcCcHH
Q 006494 542 MVDEALSILQLLASHPEGRNEIGRLSFIE-------TLVEIIK-NGTPKNKECATSVLLELGLNNSYFI-LAALQYGVYE 612 (643)
Q Consensus 542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~-------~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~-~~~~~~g~i~ 612 (643)
-+..|+.+|+.|+-.+.+...+.+.+-.. .|++++. ++++..||.|+.+|.+||.++...+ ..+.+.+++.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 47899999999999999888887765433 3444443 3678899999999999999988766 4566789999
Q ss_pred HHHHHHhhCCHHHHH
Q 006494 613 HLVEITRCGTNRGQR 627 (643)
Q Consensus 613 ~L~~ll~~g~~~~k~ 627 (643)
.|+.++..+...+..
T Consensus 220 ~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887554443
No 197
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.23 E-value=0.56 Score=44.91 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=76.2
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCC--chHHHHhcCcHHHHHHHhcc---------CChhhHHHHHHHHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQS--NKSRAIKAGIIPSLLKLLED---------KALGMVDEALSILQLL 553 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e--n~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~Al~iL~nL 553 (643)
.....+++.+.++.... ..+.-|.-...+.+ -...+++.||+..|+++|.. .+......++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556777776664332 22222222122222 25678899999999999865 1225678899999999
Q ss_pred hCChhhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 554 ASHPEGRNEIGR-LSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 554 a~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
..+..|...+.+ .+++..|+..|.+.+..++..|+.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999998887 488999999999999999999999999988
No 198
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.13 E-value=1.5 Score=47.26 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=98.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccccc----ccchhhccCChHHHHHHcccCC-------hhhHHHHHHHHHHhhcCCC
Q 006494 449 IIEILQNGTNEARENSAAALFSLSMLDE----NRVMVGNLNGIPPLVNLLRYGS-------IRGKKDAATALFNLSINQS 517 (643)
Q Consensus 449 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~s~~-------~~~k~~A~~aL~nLs~~~e 517 (643)
+..+++..+.+-|-.|.-..-.+...++ +|..+.+.-+++.+=.++.+++ .-.+..++..|...|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4444444444444333333344544333 6777888878888888886542 2335566788888998887
Q ss_pred c--hHHHHhcCcHHHHHHHhcc-CCh------hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHH
Q 006494 518 N--KSRAIKAGIIPSLLKLLED-KAL------GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECA 587 (643)
Q Consensus 518 n--~~~iv~~G~v~~Lv~lL~~-~~~------~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A 587 (643)
- ...|++ .||.|.+++.. .++ .+.+.+-.+|..++.++.|..+++..|+++.+.++-.-.+ .....-|
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 556665 59999999965 233 3899999999999999999999999999999998764322 2334455
Q ss_pred HHHHHHhc
Q 006494 588 TSVLLELG 595 (643)
Q Consensus 588 ~~~L~~L~ 595 (643)
+.++.-+.
T Consensus 174 l~Vlll~~ 181 (698)
T KOG2611|consen 174 LKVLLLLV 181 (698)
T ss_pred HHHHHHHH
Confidence 55555443
No 199
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.97 E-value=19 Score=42.57 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc----CCC----HHHHHHHHHH
Q 006494 360 IEEICSLIQNLSS-----SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS----YPD----SKIQEHTVTA 426 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~~ 426 (643)
.+++..++..+.+ ...+.....++.|+..++ -..||..+.+.|+++.|+..|. ... ..+-+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3456666666653 233334445566666664 4889999999999999988775 323 4555555555
Q ss_pred HHhcccChh---hHH--HHHhc--------CChHHHHHHHccC----CHHHHHHHHHHHHHccccccccchhhccCChHH
Q 006494 427 LLNLSLDET---NKR--HIARE--------GAIPAIIEILQNG----TNEARENSAAALFSLSMLDENRVMVGNLNGIPP 489 (643)
Q Consensus 427 L~nLs~~~~---~k~--~i~~~--------g~i~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~ 489 (643)
+..|..... ... ..... ..+..+++.+.+. +..+....+.+|-+|+..++.+ +..
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~~ 266 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MDA 266 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HHH
Confidence 544432111 100 00111 1256666666543 5777888899999998765542 233
Q ss_pred HHHHccc---------C-ChhhHHHHHHHHHHhhc----CC---CchHHHHhcCcHHHHHHHhccCCh--------h---
Q 006494 490 LVNLLRY---------G-SIRGKKDAATALFNLSI----NQ---SNKSRAIKAGIIPSLLKLLEDKAL--------G--- 541 (643)
Q Consensus 490 Lv~lL~s---------~-~~~~k~~A~~aL~nLs~----~~---en~~~iv~~G~v~~Lv~lL~~~~~--------~--- 541 (643)
|++.++. . +.+. ...+..+..++. +. .-|..+++.|++...++.|....+ +
T Consensus 267 Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 267 LVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred HHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 3333221 1 1111 122344444442 11 127889999999999998865222 2
Q ss_pred -----hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhccC
Q 006494 542 -----MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT--PKNKECATSVLLELGLN 597 (643)
Q Consensus 542 -----~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~ 597 (643)
....++.+|.-||......+.+...+++ .++.-|...+ ..+-..|=.+|-.|+.+
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 2445788888888876555555556666 4445454422 33334455556666663
No 200
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.87 E-value=0.57 Score=39.92 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=56.4
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..+++++..+.+.+.++|..|+.+|.+++....+.... --..+...|.+++.+.++++|..|.-+-++|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888999999999999999999999999764432221 12568899999999999999999977777664
No 201
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.054 Score=56.49 Aligned_cols=61 Identities=25% Similarity=0.529 Sum_probs=48.3
Q ss_pred cccCccCcccccCCe-----ecCCcccccHHhHHHHHhcC-CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494 272 EFLCPVTLEIMTDPV-----IVATGQTYERESIQRWLNSN-HKTCPKTGQILDHLSLAPNYALRNLI 332 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv-----~~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~pn~~lr~lI 332 (643)
..+||||++-..-|+ ++.|||-|-..||++|+... ...||.|.-.-....+.|-+.+|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 468999999888775 46899999999999999521 24599998777777788877777653
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.83 E-value=1.6 Score=47.78 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=115.5
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhCChhhH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL----GMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~~~~~~ 560 (643)
.....+..++.+++...+..|..-|..|+..+.....++...++..|.+++.++.. .+....+.++..|-.+.-..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 35567888899999999999999999999999999999999999999999987533 44555556655555543211
Q ss_pred HHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 561 NEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
=..+...+|.....+..- ....+-..|+.+|-++..++....+.+.++--+..|...++.++.+...+|.++|..|-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111223445555555422 233455789999999998888777888888889999999999999999999999987643
No 203
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.78 E-value=0.12 Score=37.94 Aligned_cols=40 Identities=25% Similarity=0.596 Sum_probs=31.0
Q ss_pred CccCcc--cccCCeecCCc-----ccccHHhHHHHHhcC-CCCCCCCC
Q 006494 275 CPVTLE--IMTDPVIVATG-----QTYERESIQRWLNSN-HKTCPKTG 314 (643)
Q Consensus 275 Cpi~~~--~m~dPv~~~~g-----~t~~r~~I~~w~~~~-~~~cP~~~ 314 (643)
|-||++ --.+|.+.||. +.+.+.|+.+|+... +.+||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 677775 44578888874 779999999999853 56799884
No 204
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.43 E-value=0.92 Score=38.66 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=49.7
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSL 471 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L 471 (643)
..+++++..+.++|++++..|+++|.|++..-.......-...++.|.+++.+.++.++. ++..|-.|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRS-AAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHH
Confidence 468899999999999999999999999985443222222345777888888888888775 44555443
No 205
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.31 E-value=6.7 Score=41.00 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcC---CCchH
Q 006494 446 IPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSIN---QSNKS 520 (643)
Q Consensus 446 i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~---~en~~ 520 (643)
+...+..+.......|+.+...+..+-...-....+.. .-.+..+.+.++.|...-+..|+.++.-|+.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444445555677777777777766432222222222 22567788888888776667777777777654 23444
Q ss_pred HHHhcCcHHHHHHHhccCChh--hHHHHHHHHHHHhCCh-hhHHHHHh-cCcHHHHH--HHHhc-C---------ChHHH
Q 006494 521 RAIKAGIIPSLLKLLEDKALG--MVDEALSILQLLASHP-EGRNEIGR-LSFIETLV--EIIKN-G---------TPKNK 584 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~~~--~~~~Al~iL~nLa~~~-~~~~~i~~-~g~i~~Lv--~lL~~-~---------s~~~k 584 (643)
.+.+ ...|.|.+.+.+.... ....++.+|+.++.-. ..-..+.+ ...+..+. ...+. + ++...
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 4444 5788999999875433 3344555555544421 11111110 01222111 11221 1 13345
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 585 ECATSVLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 585 e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
-.|+..-..|... +........ ...++.|..++.+.+..+|-.|.+.|-.|.+
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5555443333332 232233222 3579999999999999999999998887753
No 206
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.26 E-value=6.5 Score=39.50 Aligned_cols=196 Identities=20% Similarity=0.225 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---h
Q 006494 360 IEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---E 434 (643)
Q Consensus 360 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~ 434 (643)
...++.|+..|.. ..+-+|-+|..+|..+. . .+..+.|-+..+.+...+.+.+-.++..+-.- +
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 4678888888874 45667778888888765 1 23445566666555555555444444443211 1
Q ss_pred h--hH-HHH-Hh------cCChHHHHHHHccCC--HHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhH
Q 006494 435 T--NK-RHI-AR------EGAIPAIIEILQNGT--NEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGK 502 (643)
Q Consensus 435 ~--~k-~~i-~~------~g~i~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k 502 (643)
. +. ..+ ++ .+-+..+-..|.+.+ .--|. .++|.|- .++...+|..|++=+..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry---~amF~LR-------n~g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY---RAMFYLR-------NIGTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH---hhhhHhh-------ccCcHHHHHHHHHhcccchHHHH
Confidence 0 00 000 11 111333333332221 11222 2233321 12333477888888877788888
Q ss_pred HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC
Q 006494 503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT 580 (643)
Q Consensus 503 ~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s 580 (643)
..++.++..|-+ .-+||.|.+.|.+ .++-+.-+|+.+|..++. ..++..|.+++....
T Consensus 205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 888888877643 4578999999876 566788889998876654 467888999998888
Q ss_pred hHHHHHHHHHHHHhcc
Q 006494 581 PKNKECATSVLLELGL 596 (643)
Q Consensus 581 ~~~ke~A~~~L~~L~~ 596 (643)
+.+++.+..+|..+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877765543
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.16 E-value=0.36 Score=45.13 Aligned_cols=146 Identities=22% Similarity=0.202 Sum_probs=97.3
Q ss_pred CChHHHHHHHcc--CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chH
Q 006494 444 GAIPAIIEILQN--GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKS 520 (643)
Q Consensus 444 g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~ 520 (643)
..++.++..|.. .+.++|..+.-++..+- +..+....+ -.-+.+-.++..+..+....++.++..|-..+. ...
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345666666654 46678887887777762 223332221 122333344455555677788888888776443 444
Q ss_pred HHH-hcCcHHHHHHHhc--cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hH-HHHHHHHHHHH
Q 006494 521 RAI-KAGIIPSLLKLLE--DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PK-NKECATSVLLE 593 (643)
Q Consensus 521 ~iv-~~G~v~~Lv~lL~--~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~-~ke~A~~~L~~ 593 (643)
.+. ..|..+.++.+.. ..+..++..++.+|..=|.+...|..|.+ .+++.|-++++... +. .|..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 544 5899999999998 57778888889999888888888887775 58899999886544 44 67777777654
No 208
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.039 Score=54.28 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=44.0
Q ss_pred CcccCccCcccccCCe----------ecCCcccccHHhHHHHHhcC-CCCCCCCCcccCCCCCCch
Q 006494 271 HEFLCPVTLEIMTDPV----------IVATGQTYERESIQRWLNSN-HKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv----------~~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~pn 325 (643)
++-.|.+|++-+-+-| .++|+|.|.-.||.-|+--| ..+||-|.+.++...+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 5567999987766555 58999999999999999855 4789999998876555544
No 209
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.00 E-value=0.051 Score=43.33 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=23.1
Q ss_pred cccCccCccccc-C---Ceec----CCcccccHHhHHHHHhc--CC--------CCCCCCCcccC
Q 006494 272 EFLCPVTLEIMT-D---PVIV----ATGQTYERESIQRWLNS--NH--------KTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~-d---Pv~~----~~g~t~~r~~I~~w~~~--~~--------~~cP~~~~~l~ 318 (643)
+..|+||..... + |+++ .||++|...|+.+||.. +. .+||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998765 2 5543 58999999999999972 11 13999998875
No 210
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.93 E-value=0.15 Score=40.68 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=32.0
Q ss_pred cCccCcccccC----Ceec-CCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 274 LCPVTLEIMTD----PVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 274 ~Cpi~~~~m~d----Pv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
+||=|.-=|.. ||.- -|.|.|.-+||.+|++. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 45555544421 3433 58899999999999997 678999998754
No 211
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.93 E-value=0.069 Score=60.96 Aligned_cols=47 Identities=13% Similarity=0.456 Sum_probs=35.8
Q ss_pred cccCccCccccc--CCee-----cCCcccccHHhHHHHHh-cCCCCCCCCCcccC
Q 006494 272 EFLCPVTLEIMT--DPVI-----VATGQTYERESIQRWLN-SNHKTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~--dPv~-----~~~g~t~~r~~I~~w~~-~~~~~cP~~~~~l~ 318 (643)
.-.|+||..++. |.-. ..|.|-|..+|+-+||. +++.+||.||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 347999999976 4322 23678899999999998 45678999996543
No 212
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.87 E-value=4.9 Score=43.04 Aligned_cols=239 Identities=21% Similarity=0.205 Sum_probs=134.0
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHH-HHHHHHHhcccChhh
Q 006494 360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQE-HTVTALLNLSLDETN 436 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~-~a~~~L~nLs~~~~~ 436 (643)
.+.+..++..|.+ .+...|+.++-.|..-+ .++..|..+..+|.+..+++.+... +..... .++.++.-++.+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 4678888888873 35567888887777766 4789999999999999999999543 332333 334444445555444
Q ss_pred HHHHHhcCChHHHHHHHcc--C---CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---------cCChhhH
Q 006494 437 KRHIAREGAIPAIIEILQN--G---TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---------YGSIRGK 502 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~--~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------s~~~~~k 502 (643)
-..+.+.+.+..++.++.. . ......... .+++ ++. ...+..+-..+. ......+
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~ls-------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLS-------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhh-------HHH-HHHHHHHHHHHhccccccccCCcccccc
Confidence 4444456667777777761 1 000000000 0000 000 001111111110 0112233
Q ss_pred HHHHHHHHHhh--------------cC-CCchHHHHhcCcHHHHHHHhcc----C-------C-----hhhHHHHHHHHH
Q 006494 503 KDAATALFNLS--------------IN-QSNKSRAIKAGIIPSLLKLLED----K-------A-----LGMVDEALSILQ 551 (643)
Q Consensus 503 ~~A~~aL~nLs--------------~~-~en~~~iv~~G~v~~Lv~lL~~----~-------~-----~~~~~~Al~iL~ 551 (643)
--|..+|..++ .. +-.+.++...|++..++.++.+ . . -...+.++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 44555555553 11 1236777888999999999862 1 1 124567889999
Q ss_pred HHhCC-hhhHHHHHhc--CcHHHH-HHHHhcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Q 006494 552 LLASH-PEGRNEIGRL--SFIETL-VEIIKNG---TPKNKECATSVLLELGLNNSYFILAALQYGV 610 (643)
Q Consensus 552 nLa~~-~~~~~~i~~~--g~i~~L-v~lL~~~---s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~ 610 (643)
+.+.. .+++...... +.++.+ ..++... .......++.++.|+..+++..+......++
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 88875 4556666543 333333 3333322 2344568899999999999877666554433
No 213
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.64 E-value=6.3 Score=37.55 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL 453 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 453 (643)
++.+|..++..+..|+...+..-. ..++.+...|.++++.++..|+.+|..|...+-.|. +...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 467888999999988876553222 246789999999999999999999999875543322 122337788888
Q ss_pred ccCCHHHHHHHHHHHHHcccc
Q 006494 454 QNGTNEARENSAAALFSLSML 474 (643)
Q Consensus 454 ~~~~~~~~~~Aa~~L~~Ls~~ 474 (643)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999888754
No 214
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.59 E-value=5.7 Score=37.85 Aligned_cols=93 Identities=25% Similarity=0.207 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc
Q 006494 457 TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE 536 (643)
Q Consensus 457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~ 536 (643)
++.+|.++..++..|+....+ +. ...++.+...|+++++.+++.|+.+|.+|...+-.+.+ ...+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 467888999999988754332 11 24578899999999999999999999999865433322 122367788888
Q ss_pred cCChhhHHHHHHHHHHHhCC
Q 006494 537 DKALGMVDEALSILQLLASH 556 (643)
Q Consensus 537 ~~~~~~~~~Al~iL~nLa~~ 556 (643)
++++.++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999998886
No 215
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.14 Score=50.12 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCcccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494 270 PHEFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 324 (643)
...|.|||++-.|.+-. +-+|||.|.-.++++.- ..+|+.|+++....++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 46799999999999865 46899999999987754 468999999999887765
No 216
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.26 E-value=0.95 Score=36.31 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcC
Q 006494 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLS 567 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g 567 (643)
.|.|++|+.|+++.+.....+-+.++++.++++... +.-.++--|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999988888888888999999999975 566788889999999999999999887765
No 217
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.14 E-value=25 Score=38.26 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=110.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccC----hhhHHHHHhcCChHHHHHHHccC-------CHHHHHHHHHHHHHcccccc
Q 006494 408 LVQLLSYPDSKIQEHTVTALLNLSLD----ETNKRHIAREGAIPAIIEILQNG-------TNEARENSAAALFSLSMLDE 476 (643)
Q Consensus 408 Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~ 476 (643)
+..+++..+.+-|-.|+-..-.+..+ ..||..+.++=+++.+=++|.++ +.-.+..+.++|.-++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 44445444444444444444444433 35777888887888888888653 22356677788888887776
Q ss_pred c--cchhhccCChHHHHHHcccC-Chh------hHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCC-hhhHHHH
Q 006494 477 N--RVMVGNLNGIPPLVNLLRYG-SIR------GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEA 546 (643)
Q Consensus 477 ~--k~~i~~~g~i~~Lv~lL~s~-~~~------~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~A 546 (643)
. -..+. ..||.|..++..+ +++ ...++..+|+.++..+.....++..|+++.+-++-.-++ ..-...|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 22232 4789999998654 333 677889999999999999999999999999998765422 2223344
Q ss_pred HHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 547 LSILQLLASH----PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 547 l~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
+.++.-+... ++.-..+.. .|..+..=+..-....|-.++.+|..+
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444432 223333322 233333333333344455556666543
No 218
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.064 Score=39.42 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=38.5
Q ss_pred ccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 273 FLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
-.|.||.+--.|-|+-.|||- .|..|=.+.+..++..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 349999999999999999995 7888877777767889999998764
No 219
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.19 Score=52.63 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=41.0
Q ss_pred CCcccCccCcccccCCe-----e---cCCcccccHHhHHHHHhcCC------CCCCCCCcccC
Q 006494 270 PHEFLCPVTLEIMTDPV-----I---VATGQTYERESIQRWLNSNH------KTCPKTGQILD 318 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv-----~---~~~g~t~~r~~I~~w~~~~~------~~cP~~~~~l~ 318 (643)
-.++.|-||++...+++ . .+|.|+||-.||.+|-.... ..||+|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46889999999999998 4 56999999999999996433 56999997754
No 220
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.13 Score=52.45 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.9
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
++-.||||.---..-|+.||||.-|..||.+++-+ ...|=+|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 67899999998888999999999999999999986 466777765443
No 221
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=17 Score=43.41 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=129.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC-HHHHHHHHHHHHhcccChhhH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~k 437 (643)
-+..+..|++.|++.+..++-.|++.+..++.+.| ..+++ .+|...+.++.-.+ ...=..++.+|..|+.---..
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 45778888899999999999999999999998777 33333 25566666665433 333346777777665321111
Q ss_pred HHHHhcCChHHHHHHHcc----C----CHHHHHHHHHHHHHcccccccc--chhhccCChHHHHHHcccCChhhHHHHHH
Q 006494 438 RHIAREGAIPAIIEILQN----G----TNEARENSAAALFSLSMLDENR--VMVGNLNGIPPLVNLLRYGSIRGKKDAAT 507 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~----~----~~~~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~ 507 (643)
.... ...+|.+++-|.- | ...+|..|+.+++.++...+.. ..+...=+-..|+..+-+.....++.|..
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 1111 1234445544421 1 2358899999999998544432 11111001112223334456677888888
Q ss_pred HHHHhhcCCCch--------------------------HHHHh-cCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhC
Q 006494 508 ALFNLSINQSNK--------------------------SRAIK-AGIIPSLLKLLED-----KALGMVDEALSILQLLAS 555 (643)
Q Consensus 508 aL~nLs~~~en~--------------------------~~iv~-~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~ 555 (643)
|+........|. ..+.+ .|...++++-|.. -+..+.+.+..+|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 888765433322 11112 4555666655532 466789999999999887
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006494 556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECA 587 (643)
Q Consensus 556 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A 587 (643)
.. ......+.+++++....+.+...+.-+
T Consensus 574 ~~---pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 574 TE---PKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred hh---HHhhcccchhhhhhhhcCCChHHhhhh
Confidence 52 233445677888777766666555433
No 222
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.74 E-value=6.2 Score=41.00 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=108.7
Q ss_pred HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch--HH-------
Q 006494 451 EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK--SR------- 521 (643)
Q Consensus 451 ~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~--~~------- 521 (643)
.-+++.+..+|+.|..+|+-.+..+.. + ....++.+...++.++..++..|+.+++.+....+.. ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 556788899999999999998876652 1 1235677888888889999999999999987643321 11
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc----CChHHHHHHHHHHHHhccC
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN----GTPKNKECATSVLLELGLN 597 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~ 597 (643)
.-....+..+.+.+.+.+++++..|+..++.|-.+..... ...++..|+-+.-+ .+++.|+.-...+-..|..
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 1124567778888887888899999999998777543221 12344444444332 2345565555556666776
Q ss_pred CHHHHHHHHHcCcHHHHHHHHhhC
Q 006494 598 NSYFILAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 598 ~~~~~~~~~~~g~i~~L~~ll~~g 621 (643)
++.+.. .+..+.++.+..+....
T Consensus 187 ~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 187 SPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred CHHHHH-HHHHHHHHHHHHHHhCc
Confidence 666644 44556777777776544
No 223
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.13 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=25.4
Q ss_pred cCCcccccHHhHHHHHhcC--CCCCCCCCcccC
Q 006494 288 VATGQTYERESIQRWLNSN--HKTCPKTGQILD 318 (643)
Q Consensus 288 ~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~ 318 (643)
-.|.|.|-..||.+|++.. ...||+||+...
T Consensus 49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3689999999999999843 356999998654
No 224
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.40 E-value=3.9 Score=43.16 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=141.2
Q ss_pred HHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hh-----HHHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHH
Q 006494 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TN-----KRHIAREGAIPAIIEILQN--GTNEARENSAAALFS 470 (643)
Q Consensus 399 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~-----k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~ 470 (643)
+...|.+..|+..|..-+.+++..++.+..++-... ++ ...+... -+-++..|-. ++++....+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 344688889999999889999999999888875322 22 2223321 1223333322 245666777888888
Q ss_pred ccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhc---CcHHHHHHHhccCChhhHHHH
Q 006494 471 LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKA---GIIPSLLKLLEDKALGMVDEA 546 (643)
Q Consensus 471 Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~---G~v~~Lv~lL~~~~~~~~~~A 546 (643)
....+.....|.....+..+.+.++.++=++.-+|..++..|-. ++.-...+... ..+.....+|.+++=-.+..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88777777778888889999999999998999999999998665 44455666653 456677888888777788999
Q ss_pred HHHHHHHhCChhhHHHHHh----cCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 547 LSILQLLASHPEGRNEIGR----LSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 547 l~iL~nLa~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+..|..|-..+.+...+.. ..-+..++.+|++.|...|-.|..+.--...+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999998877665543 35688889999999999999999988766654
No 225
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.29 E-value=0.13 Score=53.29 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=41.0
Q ss_pred cCccCcccccCCeecCCcccccHHhHHHHHhc-CCCCCCCCCcccCCC
Q 006494 274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNS-NHKTCPKTGQILDHL 320 (643)
Q Consensus 274 ~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~ 320 (643)
.|-||-+==+|--|-||||-.|-.|+..|-.+ +..+||+||-.+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 68999999999989999999999999999964 368999999877643
No 226
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.28 E-value=6.4 Score=45.94 Aligned_cols=188 Identities=19% Similarity=0.234 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc--Chhh
Q 006494 360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETN 436 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~ 436 (643)
+..+....+.+.. .++.++..++..+.++++.-+. .....+.++.+..+.......+++.|+..+.++.. +...
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 3455555655553 4566777777788877754332 55667888999999988888889988888877642 1221
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc--
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-- 514 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-- 514 (643)
=......+.++....+++...+...+.....|+..-.- ..+...-+++...+++....++...++.-...++.
T Consensus 312 ---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 312 ---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 11234677888888889999988888887777532222 34445567778888777666666666665555554
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
+.+....+...-++|.+..++.+.+..+....+.....++.
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p 427 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP 427 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence 33345555566668888888877777776666666665543
No 227
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.90 E-value=21 Score=39.76 Aligned_cols=149 Identities=11% Similarity=0.010 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSS-------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
-.+.+|.|+++|.. ++|.....|..+|...+.. ....|.+. ++.++-.-+.++++.-++.|+.++...-
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 45688999999964 3556777777788776632 12223332 4444445667788999999999998765
Q ss_pred cCh--hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc---CChhhHHHHH
Q 006494 432 LDE--TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY---GSIRGKKDAA 506 (643)
Q Consensus 432 ~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s---~~~~~k~~A~ 506 (643)
..+ .....++ ..++|.|...+.+....++..+|+++..++. .....|...|-++..++-.-- +.+....++.
T Consensus 395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad--~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIAD--HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHH--HHHHhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 433 2333444 3578999988887777888999999998873 223333445555555544332 3566777888
Q ss_pred HHHHHhhc
Q 006494 507 TALFNLSI 514 (643)
Q Consensus 507 ~aL~nLs~ 514 (643)
+...||..
T Consensus 472 w~~~nlv~ 479 (858)
T COG5215 472 WRKENLVD 479 (858)
T ss_pred HHHHhHHH
Confidence 88888875
No 228
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.80 E-value=2.5 Score=40.40 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhCChHHHHHHhcC---------CCHHHHHHHHHHHHhc
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN-RILIANNGGIRPLVQLLSY---------PDSKIQEHTVTALLNL 430 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~nL 430 (643)
.....++..|.+..... +.+..|+...+..+.. -..|.+.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45566677776544332 4455555444444332 4456678999999998863 3457788899999998
Q ss_pred ccChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcc
Q 006494 431 SLDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLS 472 (643)
Q Consensus 431 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 472 (643)
..+..+...+. ..+++..|+..|.+.+..++..+.-+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88888877777 6889999999999999999999988887764
No 229
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.80 E-value=6.9 Score=44.07 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=101.9
Q ss_pred cCCCHHHHHHHHHHHHHhhhhChhhHHHHH---hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChH
Q 006494 371 SSSQLNIKRDSVMKIRMLSKENPDNRILIA---NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIP 447 (643)
Q Consensus 371 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~ 447 (643)
-.-.++.+.-|+..||.+.++...+-..+- .+..+..++..+. .++..+..++++|.|+-.++.++..+... ..
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~ 630 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LE 630 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HH
Confidence 344677888899999999877665544332 1235555666665 46778889999999999998888888743 23
Q ss_pred HHHHHH---ccC-CHHHHHHHHHHHHHccc--cccccchhhccCChHHHHHHcccC-----ChhhHHHHHHHHHHhhcCC
Q 006494 448 AIIEIL---QNG-TNEARENSAAALFSLSM--LDENRVMVGNLNGIPPLVNLLRYG-----SIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 448 ~Lv~lL---~~~-~~~~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~s~-----~~~~k~~A~~aL~nLs~~~ 516 (643)
.+..-+ +++ +...+...+...+|++. ...+- + .+..+.|...+... +.+....++.||.+|+..+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-Q---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-c---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 232222 233 34455545555556552 22221 1 34555555554322 3356677788999999988
Q ss_pred CchHHHHhcCcHHHHHHHhcc
Q 006494 517 SNKSRAIKAGIIPSLLKLLED 537 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~~ 537 (643)
.+..++...--+..+..-+++
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 888888776677777777765
No 230
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.57 E-value=3.7 Score=41.43 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhc-ccChhhHHHHHhcCChHHHHHHHc
Q 006494 377 IKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQ 454 (643)
Q Consensus 377 ~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~ 454 (643)
....|++.|.-++--++..|..+....++..|+.+|. ...+.++..++.+|..+ ..++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3456777777777778999999999999999999994 45788999998888765 467889888889999999999998
Q ss_pred cC--CHHHHHHHHHHHHH
Q 006494 455 NG--TNEARENSAAALFS 470 (643)
Q Consensus 455 ~~--~~~~~~~Aa~~L~~ 470 (643)
+. +.+++-..+-.|+-
T Consensus 187 ~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYF 204 (257)
T ss_pred cccccHHHhHHHHHHHHH
Confidence 75 45666666665543
No 231
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.54 E-value=7.5 Score=40.38 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=113.9
Q ss_pred HHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cc-------h
Q 006494 410 QLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RV-------M 480 (643)
Q Consensus 410 ~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~-------~ 480 (643)
..+.+.++.+++.|+.+|.-.+.-+. .++. ..++.+...++.++.+++..|..+++.+...... -. .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 56778899999999999988775443 1221 2477788888778999999999999998643321 11 1
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK----ALGMVDEALSILQLLASH 556 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~ 556 (643)
......+..+.+.+.+.++.++..|+..+.-|..+..... ...++..|+-+..++ +..+...--..+-..+..
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 2224567788888888898999999999998876544433 234455565555442 234444444445566655
Q ss_pred hhhHHHHHhcCcHHHHHHHHhcCC----hHH---HHHHHHHHHHhccC
Q 006494 557 PEGRNEIGRLSFIETLVEIIKNGT----PKN---KECATSVLLELGLN 597 (643)
Q Consensus 557 ~~~~~~i~~~g~i~~Lv~lL~~~s----~~~---ke~A~~~L~~L~~~ 597 (643)
....+......+++.+-.+.+... +.. -.+.+..+..++..
T Consensus 187 ~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 187 SPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 443334444567787777765432 211 22445555666653
No 232
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.45 E-value=0.78 Score=40.45 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=56.2
Q ss_pred cHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 527 IIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 527 ~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
++..|+++|.. .++.+..-|+.=|..++.+ |.|+..+-..|+=..+++++.+.++++|..|+.++-.+-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 57789999943 5566667778888888886 8899888888999999999999999999999998876543
No 233
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.06 E-value=4.5 Score=40.83 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHHHHHHh-cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh
Q 006494 542 MVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIK-NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR 619 (643)
Q Consensus 542 ~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 619 (643)
....|+.+|.-++- ||..+..+.+...+..++.+|. +..+.++-.++.+|..+...++.+.....+.+++..+..++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34557777877666 6888999998999999999994 467889999999999999999999999999999999999997
Q ss_pred hC--CHHHHHHHHHHHHHhh
Q 006494 620 CG--TNRGQRKANSLLQHMS 637 (643)
Q Consensus 620 ~g--~~~~k~~A~~lL~~l~ 637 (643)
+. +...|-|..+.|....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 65 5678888888887554
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.83 E-value=8.9 Score=46.09 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc----ChhhHHHHHhcCChHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL----DETNKRHIAREGAIPAI 449 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~L 449 (643)
..+.+..|+.-|..|+.....- ..-.-.+|+++.++.++..++|..|+.+|..+-. -+..-..|.-.-.+|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 3467788999999888643221 1112368999999999999999999888876531 12233344444577888
Q ss_pred HHHHccC-CHHHHHHHHHHHHHccc------------------cccccchhhc----c------CChHHHH-HHcccCCh
Q 006494 450 IEILQNG-TNEARENSAAALFSLSM------------------LDENRVMVGN----L------NGIPPLV-NLLRYGSI 499 (643)
Q Consensus 450 v~lL~~~-~~~~~~~Aa~~L~~Ls~------------------~~~~k~~i~~----~------g~i~~Lv-~lL~s~~~ 499 (643)
-+++.+. ...+|..=|..|..|+. ++.+-+...+ . ..+..++ .+|....+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 8888763 33444433444433331 1111111111 0 1222333 33333344
Q ss_pred hhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc
Q 006494 500 RGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN 578 (643)
Q Consensus 500 ~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 578 (643)
-+|+.-+..|.-||.. ...+ ...=.++.|+..|.+.+..+.-.-..-+.-+|..-.-| -++...+|.|..-|.+
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC
Confidence 5555555566666641 1000 01124566677776654443322223232222221111 1234567777777777
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 579 GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 579 ~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.+.+-..|+..|..||..+--....+.+ ++.-..-++-..+.-+|+.+..++....+
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 88888888888888888754322222211 23333345556677888888887765543
No 235
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=88.78 E-value=0.36 Score=35.08 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred CccCcccc--cCCeec--CCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494 275 CPVTLEIM--TDPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQIL 317 (643)
Q Consensus 275 Cpi~~~~m--~dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l 317 (643)
||+|.+-| +|--+. +||+.+||.|..+-...++..||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 233344 47999999998888776678999999874
No 236
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.76 E-value=0.11 Score=58.34 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=40.3
Q ss_pred CcccCccCcccccCCee---cCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 271 HEFLCPVTLEIMTDPVI---VATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~---~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.+-.||+|..-+.|-.+ .+|||-||.+||..|... ..+||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 34579999999998876 469999999999999986 5899999987653
No 237
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.49 E-value=0.11 Score=59.50 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=41.5
Q ss_pred ccCccCcccccCCeecCCcccccHHhHHHHHhcCC-CCCCCCCcccCCCCCC
Q 006494 273 FLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNH-KTCPKTGQILDHLSLA 323 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~-~~cP~~~~~l~~~~l~ 323 (643)
+.|+||.+ ..+|+++.|||-||+.|+.+.+.... ..||.|+..+....+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 89999999 88899999999999999999998433 3599998877654433
No 238
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.41 E-value=7.8 Score=45.11 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHH
Q 006494 457 TNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKL 534 (643)
Q Consensus 457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~l 534 (643)
.+.++..|+.++..... ...+.. .+.+..|.++....+.++...-+.+|...+...+......++-+.|..+.+
T Consensus 504 ~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCK----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred CCchhHHHHHHHHhccC----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 34455556665555441 112222 567788888887777777777888899999887777777888888888888
Q ss_pred hcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC----hHHHHHHHHHHHHhccCCHHHHHHHHHc
Q 006494 535 LED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT----PKNKECATSVLLELGLNNSYFILAALQY 608 (643)
Q Consensus 535 L~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~~~~~ 608 (643)
+.. .++.+...+-.++..|+....+..-+.+ -.+|.++..|.... .....-|+.+|-.+.++.+.-.....-.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 743 6778888888888888875544444433 57999999997644 4556677788887777765433322333
Q ss_pred CcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494 609 GVYEHLVEIT-RCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 609 g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~ 637 (643)
-+.|++.+.. ++++...-..|.++|+.+-
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 4677777754 5666677789999998764
No 239
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.36 E-value=3 Score=46.72 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHH
Q 006494 455 NGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLL 532 (643)
Q Consensus 455 ~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv 532 (643)
.|+...+..|+..+...-. .++. +..+|..+++|..+++..+++.|+..|-.+|.. ++...+++ ..|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHH
Confidence 3678888889998887643 2332 235889999999999999999999999999984 56777764 4688
Q ss_pred HHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh---cCChHHHHHHHHHHH
Q 006494 533 KLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK---NGTPKNKECATSVLL 592 (643)
Q Consensus 533 ~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~---~~s~~~ke~A~~~L~ 592 (643)
++|..+++.-...+=.+|..|-... ..+.+..+...+. ++++.+|+.++..|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9998765544444444444433311 1234444544444 567778888887664
No 240
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.24 E-value=8.7 Score=44.17 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=144.9
Q ss_pred hHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHH-hcccChhhHHHHHhcCChHHHHHHHccCC-HHHHHHHHHHHHHcc
Q 006494 395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALL-NLSLDETNKRHIAREGAIPAIIEILQNGT-NEARENSAAALFSLS 472 (643)
Q Consensus 395 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls 472 (643)
.|...+..|+...|.++..........+...+|. .++...+ + ....++++...+.+.. .-..-.+.-++.||+
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 3445567789999999888777777777777776 1111100 0 1123333333332211 011223555677776
Q ss_pred cccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH-HHh-cCcHHHHHHHhccCChhhHHHHHHH
Q 006494 473 MLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR-AIK-AGIIPSLLKLLEDKALGMVDEALSI 549 (643)
Q Consensus 473 ~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~-iv~-~G~v~~Lv~lL~~~~~~~~~~Al~i 549 (643)
..++ .|..|...-+++.+-.++-..++..+..++..+.||..++-.-.+ +++ ...++.....+..........++.+
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a 650 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGA 650 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccc
Confidence 5544 566677766666666667777888999999999999987765333 334 3445555555544444444555566
Q ss_pred HHHHhCCh-hhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHH
Q 006494 550 LQLLASHP-EGRNEIGR-LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQR 627 (643)
Q Consensus 550 L~nLa~~~-~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~ 627 (643)
+..+.... ..+..+.+ ......++.++.++++.+|...+.+.+++.....+....+.....++.+..+-.-.-...++
T Consensus 651 ~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~ 730 (748)
T KOG4151|consen 651 LAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKRE 730 (748)
T ss_pred ccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhh
Confidence 66444443 33332333 36778888999999999999988888887777667777776777777777665544444455
Q ss_pred HHHHHHHH
Q 006494 628 KANSLLQH 635 (643)
Q Consensus 628 ~A~~lL~~ 635 (643)
.|...|..
T Consensus 731 ~~~~~l~~ 738 (748)
T KOG4151|consen 731 DAAPCLSA 738 (748)
T ss_pred hhhhHHHH
Confidence 55555543
No 241
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.05 E-value=16 Score=39.44 Aligned_cols=224 Identities=14% Similarity=0.154 Sum_probs=131.3
Q ss_pred HHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhc--ccChhhHHH------H--HhcCChHHH
Q 006494 380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNL--SLDETNKRH------I--AREGAIPAI 449 (643)
Q Consensus 380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL--s~~~~~k~~------i--~~~g~i~~L 449 (643)
.|+..|-.+....+..-..+.+.+++..++..+...-....+. .-..+- ...++.+.. + ...+.++.|
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l 80 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL 80 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence 3555666666555666667788999999999887631111110 000000 000111111 1 123344444
Q ss_pred HHHHccCCHHHHHHHHHHHHHccc-cccc---cchhhc-cCChHHHHHHcccC---ChhhHHHHHHHHHHhhcCCCc-hH
Q 006494 450 IEILQNGTNEARENSAAALFSLSM-LDEN---RVMVGN-LNGIPPLVNLLRYG---SIRGKKDAATALFNLSINQSN-KS 520 (643)
Q Consensus 450 v~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~---k~~i~~-~g~i~~Lv~lL~s~---~~~~k~~A~~aL~nLs~~~en-~~ 520 (643)
++++.. +.. .... -..+.+ ...+..|..++++. .+.+--.|+.++..+..+.+. -.
T Consensus 81 Lk~l~~---------------~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 81 LKFLSH---------------AMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred HHHHHH---------------HhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 444321 111 1111 112233 33445666666664 356677888888888876665 55
Q ss_pred HHHhcCcHHHHHHHhc-c---CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCCh----HHHHHHH---H
Q 006494 521 RAIKAGIIPSLLKLLE-D---KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTP----KNKECAT---S 589 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~-~---~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~----~~ke~A~---~ 589 (643)
.+.++|.++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+..- ..++.|. .
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN 225 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence 6677999999999998 4 45566667778899999999999999999999999999865221 1112222 3
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g 621 (643)
.+-.|.++.+.-+..+.+. ++..+.++..-|
T Consensus 226 ~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~~g 256 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDIIDA-IIKILDRLVELG 256 (379)
T ss_pred HHHHHHccCHHHHHHHHHH-HHHHHHHHHHHh
Confidence 5667888888766655542 444444444433
No 242
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=4.9 Score=49.24 Aligned_cols=270 Identities=15% Similarity=0.103 Sum_probs=136.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc--cChhhHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS--LDETNKR 438 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~~k~ 438 (643)
....|...+.+.++..|..++-=|-.+.++-...+... ...........+|...|.-+|..|.+-|.-.= .+...|.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 34455566678888888765432222222111111111 11223367888999888888888877654321 2334444
Q ss_pred HHHhcCChHHHHHHHccCC-------HHHHHHHHHHHH------Hcccccccc---chhhccCChHHHHHHcccC-Chhh
Q 006494 439 HIAREGAIPAIIEILQNGT-------NEARENSAAALF------SLSMLDENR---VMVGNLNGIPPLVNLLRYG-SIRG 501 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~-------~~~~~~Aa~~L~------~Ls~~~~~k---~~i~~~g~i~~Lv~lL~s~-~~~~ 501 (643)
.+++ .|++-|..|. .++....-++|. +++...+.+ ..++++..|-..+++.++. ....
T Consensus 899 ~LV~-----sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 899 SLVD-----SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNS 973 (1702)
T ss_pred HHHH-----HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhc
Confidence 4433 3333332221 111111222222 222222211 2334445556666666554 5566
Q ss_pred HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCC
Q 006494 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGT 580 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s 580 (643)
|+-|+.-+..++.....+.+=.-...||.|.+.=.+++..++.....|=..|...+. ...... ..++.-|+.-+.+..
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKE 1052 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchh
Confidence 777776666666533221111123467777777777777777666665556665532 222222 245555555555555
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 581 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
=++||.++-+|..|-.+.+.....-.-...-..+++.+.+=.+-+|+.|..+.+.++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998875532211111123344444444444555555555555544
No 243
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=0.36 Score=48.46 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=38.3
Q ss_pred cCccCc-ccccCCee----cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC
Q 006494 274 LCPVTL-EIMTDPVI----VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA 323 (643)
Q Consensus 274 ~Cpi~~-~~m~dPv~----~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~ 323 (643)
.||+|. +....|-+ =+|||+.|-+|.-.-|..|...||.|+.+|....+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 488874 34444432 289999999999999999999999999888754433
No 244
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.78 E-value=0.33 Score=48.97 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=37.6
Q ss_pred CcccCccCcccccC---CeecCCcccccHHhHHHHHhcCC--CCCCCCC
Q 006494 271 HEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNH--KTCPKTG 314 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~--~~cP~~~ 314 (643)
.-|.||+..+.-+| ||.++|||..-..+..+.-++|. +.||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34899999999886 99999999999999998888774 4599883
No 245
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.45 Score=49.42 Aligned_cols=57 Identities=32% Similarity=0.453 Sum_probs=48.9
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhH
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALR 329 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr 329 (643)
...|.+++--+.|||-+..|..|+-..|-.|+.. +.+=|.|++++...+|++-..-|
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL~F~K 96 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKLKFHK 96 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceeeeecc
Confidence 3468899999999999999999999999999996 56789999999988888743333
No 246
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=0.45 Score=40.02 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=23.8
Q ss_pred CCcccccHHhHHHHHhcCCCCCCCCCcc
Q 006494 289 ATGQTYERESIQRWLNSNHKTCPKTGQI 316 (643)
Q Consensus 289 ~~g~t~~r~~I~~w~~~~~~~cP~~~~~ 316 (643)
.|.|.|.-.||.+|++. +..||.++++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 47899999999999997 5789998865
No 247
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=19 Score=41.89 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHH-
Q 006494 415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNL- 493 (643)
Q Consensus 415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l- 493 (643)
+.+.++-.++..|..+...-.-+..+...+.+...+..|++.+.-+-.+|...+..|+.. .....+|-|...
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 334556677777777765554555566778888888888887776666777766666532 122355666653
Q ss_pred cccC--C-hhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHHHhcC
Q 006494 494 LRYG--S-IRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG--RNEIGRLS 567 (643)
Q Consensus 494 L~s~--~-~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g 567 (643)
.... . ++.+...-.++.++.. ..+-..+..+ -.+...+..+.+++......+++++++||.--.+ ...+ ..
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~--~e 888 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF--HE 888 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH--HH
Confidence 2221 1 2222233355555543 2222222222 2334444445555556677888999998875321 2222 23
Q ss_pred cHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHc---CcHHHHHHHHhhC-CHHHHHHHHHHHHHh
Q 006494 568 FIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQY---GVYEHLVEITRCG-TNRGQRKANSLLQHM 636 (643)
Q Consensus 568 ~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~ll~~g-~~~~k~~A~~lL~~l 636 (643)
++..++.+.+. ++.-.|..|+.++..+-.+.+.....+... .....+..+.... .+.+|-.|...|..+
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 55556665554 678889999988888877666544444432 3344444445444 444566665555433
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.50 E-value=9.8 Score=45.74 Aligned_cols=227 Identities=13% Similarity=0.180 Sum_probs=129.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh---h-ChhhHHHHHhhCChHHHHHHhcCCCH-HHHHHHHHHHHhccc---
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK---E-NPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSL--- 432 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~-~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~--- 432 (643)
-.+|.++.++..+..++|..|+..|..+.. . .+.+-..+.+. ..|.|-.++.+.+. .++..-+..|..|+.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 467788888888889999999888765532 1 11222222222 45566666665322 222222222222211
Q ss_pred ---------------Ch-hhHH---------HHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhcc--
Q 006494 433 ---------------DE-TNKR---------HIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNL-- 484 (643)
Q Consensus 433 ---------------~~-~~k~---------~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~-- 484 (643)
++ ++.. .-. -.++=..+..+|.+..+-++..-...|.-|+ .-+|+.
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ks 614 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKS 614 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhccc
Confidence 11 1100 000 0111122233444444444433333333333 223332
Q ss_pred -C-ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494 485 -N-GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 485 -g-~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
+ .++.|+.+|.+.+...+-.-...|..+|..-+ .+-++.+.+|.|.+-|.++.+.+...|+.+|..|+...-.++.
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~ 692 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP 692 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH
Confidence 2 46888889988877666554455555554322 2235678899999999999999999999999999987554443
Q ss_pred HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
.+- +.+.....+|-..+..+|..++.++......
T Consensus 693 ~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 693 AVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 332 3556666677778889999999998887664
No 249
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=86.39 E-value=40 Score=34.09 Aligned_cols=193 Identities=18% Similarity=0.150 Sum_probs=106.6
Q ss_pred CChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc---
Q 006494 403 GGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--- 477 (643)
Q Consensus 403 g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--- 477 (643)
.+++.|+..|... .+-++-.|..+|.++. ....++.+-+..+.+..++++....++..+-..+..
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 4566666666543 3444556666665543 222334444444444455555555555555321111
Q ss_pred --cchhh--------ccCChHHHHHHcccCC-h-hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHH
Q 006494 478 --RVMVG--------NLNGIPPLVNLLRYGS-I-RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDE 545 (643)
Q Consensus 478 --k~~i~--------~~g~i~~Lv~lL~s~~-~-~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 545 (643)
..... ..+.+..|-..|.+.+ + --+..|+..|.|+-. ..+|..|++-+..++.-.+.+
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHE 206 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHH
Confidence 00110 1123444444443332 1 223344444444321 124555666666566667777
Q ss_pred HHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCH
Q 006494 546 ALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTN 623 (643)
Q Consensus 546 Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~ 623 (643)
+..++..|-+ .-+||.|.+.|.. ..+.+|-.|+.+|..++.. .++..|.+++.+..+
T Consensus 207 vAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 207 VAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEER 265 (289)
T ss_pred HHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHH
Confidence 8777776544 3468888888865 5688999999999888762 356667777777777
Q ss_pred HHHHHHHHHHHHh
Q 006494 624 RGQRKANSLLQHM 636 (643)
Q Consensus 624 ~~k~~A~~lL~~l 636 (643)
-+++-+...|..+
T Consensus 266 vv~esc~valdm~ 278 (289)
T KOG0567|consen 266 VVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666554
No 250
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.30 E-value=3.5 Score=40.21 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHH
Q 006494 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVE 574 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~ 574 (643)
..+|+..|..++++++.+..++++..--.|...|.. ..+-+.-.++++++.|..+ +.....+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 457788888899999999999998766556666532 2334667799999999987 445666677899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhccCCHH
Q 006494 575 IIKNGTPKNKECATSVLLELGLNNSY 600 (643)
Q Consensus 575 lL~~~s~~~ke~A~~~L~~L~~~~~~ 600 (643)
++..||+-.|.-|+.++..+-..+.+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchh
Confidence 99999999999999998877766543
No 251
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.82 E-value=2.5 Score=41.82 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHhhcCCCchHHHHhcC-------cHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhh--HHHHHhcCc
Q 006494 499 IRGKKDAATALFNLSINQSNKSRAIKAG-------IIPSLLKLLED-KALGMVDEALSILQLLASHPEG--RNEIGRLSF 568 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G-------~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~ 568 (643)
...++.|+.+|..||..+.|...++..+ .+..|+++|.. ++....|-|+.+|.+|+...+. +....+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4668999999999999999988877654 45556666654 5677899999999999998543 333345689
Q ss_pred HHHHHHHHhcCC
Q 006494 569 IETLVEIIKNGT 580 (643)
Q Consensus 569 i~~Lv~lL~~~s 580 (643)
|..|+.++....
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997644
No 252
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.79 E-value=0.52 Score=48.01 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=37.3
Q ss_pred cccCccCccccc--CCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494 272 EFLCPVTLEIMT--DPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL 322 (643)
Q Consensus 272 ~f~Cpi~~~~m~--dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 322 (643)
+-.||+|.+-|. |--.. +||...||.|...--+.-+..||.||...+.+.+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 334999999885 44444 5799989988665555446789999998876553
No 253
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=9 Score=45.50 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=98.4
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
+++..|+..+++.+..++-.|+.-+.-+...-+ ..++ ..++...++++.. .+......|+-+|+.|+...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 577788888888899999999999999887554 3332 3467777776654 33455667888898888753222111
Q ss_pred HhcCcHHHHHHHHh--------cCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 564 GRLSFIETLVEIIK--------NGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~--------~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
. ..++|.++.-|. +....+|+.|+.++|.+.+.... ...-+++.=.-..|...+.+..-..|+.|.+.+.
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 1 135565555442 34568899999999999986433 2222222212222334455667788888877665
Q ss_pred -HhhhccCCC
Q 006494 635 -HMSKREHIP 643 (643)
Q Consensus 635 -~l~~~~e~p 643 (643)
+++|+...|
T Consensus 497 E~VGR~~n~p 506 (1133)
T KOG1943|consen 497 ENVGRQGNFP 506 (1133)
T ss_pred HHhccCCCCC
Confidence 666655554
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.01 E-value=2.2 Score=41.63 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-----ChHHHHHHHHHHHHhccCCHHHHH-HHHHcCcHHHHH
Q 006494 542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-----TPKNKECATSVLLELGLNNSYFIL-AALQYGVYEHLV 615 (643)
Q Consensus 542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-----s~~~ke~A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~ 615 (643)
-+-.|+.+|..++++|+.+..++++..--.|-.+|... -+..|-.+++++..|..++..+.. ..+...++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 35568999999999999999999876654555555432 245677899999999998766554 455688999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHh
Q 006494 616 EITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 616 ~ll~~g~~~~k~~A~~lL~~l 636 (643)
+++..|++-.|--|..++..+
T Consensus 196 rIme~gSElSktvaifI~qki 216 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 999999999998888887654
No 255
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.91 E-value=0.78 Score=54.92 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=38.4
Q ss_pred CcccCccCccccc-CCeecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494 271 HEFLCPVTLEIMT-DPVIVATGQTYERESIQRWLNSNHKTCPKTG 314 (643)
Q Consensus 271 ~~f~Cpi~~~~m~-dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~ 314 (643)
..|.|+||+++|+ .--+.-|||.||..|+.-|+.. +..||.|.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 4568999999999 6667889999999999999997 68899997
No 256
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.81 E-value=7.8 Score=39.46 Aligned_cols=136 Identities=15% Similarity=0.038 Sum_probs=90.7
Q ss_pred CChhhHHHHHHHHHHhhcCCCchHHHHhcC--cHHHHHHHhccC----ChhhHHHHHHHHHHHhCCh-hhH-HHHHhcCc
Q 006494 497 GSIRGKKDAATALFNLSINQSNKSRAIKAG--IIPSLLKLLEDK----ALGMVDEALSILQLLASHP-EGR-NEIGRLSF 568 (643)
Q Consensus 497 ~~~~~k~~A~~aL~nLs~~~en~~~iv~~G--~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~~-~~~-~~i~~~g~ 568 (643)
..+..+.-+++++.|+-.++..+..+.+.. .+-..+..+... +..++..++.++.|++..- ..+ ..=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 456778889999999999999988887643 333333333333 5667888888999998741 111 00011123
Q ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHH
Q 006494 569 IETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSL 632 (643)
Q Consensus 569 i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~l 632 (643)
+..+++.+.. .+++..-.++.+|.+|+..++.....+...|+...+..... ...+|.++.+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 5555553322 57888889999999999877766666555677777776664 4478999888764
No 257
>PRK14707 hypothetical protein; Provisional
Probab=84.77 E-value=76 Score=41.08 Aligned_cols=275 Identities=13% Similarity=0.045 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHh-cccChhhH
Q 006494 360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLN-LSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~~k 437 (643)
...|..+++-++. .+......|+..|.....+....+..+-..|....|=.+.+-++.....+++..|.. |+.+..-+
T Consensus 204 ~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 204 AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 3455555655542 233334455555554332334444444334444444445566777777777777654 33333333
Q ss_pred HHHHhcCChHHHHHHHcc-CCHHHHHHHHH-HHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHH-Hhhc
Q 006494 438 RHIAREGAIPAIIEILQN-GTNEARENSAA-ALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALF-NLSI 514 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~-~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~-nLs~ 514 (643)
..+ +...+.-.+.-|+. .+..+...|+. +-..|..+.+.+..+-..+.-..|-.+-+=.+......|+.+|. -|+.
T Consensus 284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 333 33344445555554 34444444444 44446554444443333332233333323345556666666666 4666
Q ss_pred CCCchHHHHhcCcHHHHHHHhcc-CCh-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHH
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLED-KAL-GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVL 591 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~-~~~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L 591 (643)
+++-+..+- ..++..+++-|.. ++. .+...|...-..|+.+++-++.+-. ..|...+.-|.. .+..++..|+..|
T Consensus 363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 666565554 4456666677765 443 4444555555577777888877744 455555555554 4556777778888
Q ss_pred HHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhh
Q 006494 592 LELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMS 637 (643)
Q Consensus 592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~ 637 (643)
..-..++.+.++.+--.++...|-.++.=. ++-.+..|..+...|.
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 776677777666554455555555555544 3444455555555554
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=84.72 E-value=55 Score=34.54 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=111.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh-hChhhHHHHHh-hC-ChHHHHHHhcCC-----C--------HHHHHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK-ENPDNRILIAN-NG-GIRPLVQLLSYP-----D--------SKIQEHTV 424 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~i~~-~g-~i~~Lv~lL~~~-----~--------~~~~~~a~ 424 (643)
..++.+-+.|++........+++-|..+.. .+......+.. -+ -.+.+.+++... + +.++...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 347778888888888888888888888886 44444444433 23 345667776432 1 27788888
Q ss_pred HHHHhcc--cChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHH-ccccc----cccchhhccCChHHHHHHccc
Q 006494 425 TALLNLS--LDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFS-LSMLD----ENRVMVGNLNGIPPLVNLLRY 496 (643)
Q Consensus 425 ~~L~nLs--~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~----~~k~~i~~~g~i~~Lv~lL~s 496 (643)
..+..+. .++..+..+. ..+.+..+.+-|...+.++......+|.. +..+. ..|..+....++..|+.+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7666654 3556777776 56678888888888888888878887775 33222 246666667788999998776
Q ss_pred CCh----hhHHHHHHHHHHhhcCCCchH
Q 006494 497 GSI----RGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 497 ~~~----~~k~~A~~aL~nLs~~~en~~ 520 (643)
.+. .+...+-..|..+|.++.+-.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCccc
Confidence 655 777888888999998776533
No 259
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.44 E-value=1.6 Score=28.48 Aligned_cols=29 Identities=14% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 569 IETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+|.+++++.+.++++|..|+.+|..++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999988753
No 260
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.23 E-value=39 Score=38.13 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~ 438 (643)
......++..-+ ++..+..-|+.-|....++.|+.... ++..++.++...|..++..|+..|-.++.+. +...
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 345666666555 46777788888888888888876655 4567999999999999999999999998763 3444
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cCChhhHHHHHHHHH
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YGSIRGKKDAATALF 510 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~~~~~k~~A~~aL~ 510 (643)
.+ ...|+.+|.+.+......+-.+|..|-..+. .+.+..|.+.+. +++..++..++..|.
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 33 4567888887765544444444444422111 234555555554 566677777776654
No 261
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.69 E-value=1.4 Score=47.46 Aligned_cols=176 Identities=16% Similarity=0.065 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcccChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccc--ccc--c----cchhhccC-ChHH
Q 006494 420 QEHTVTALLNLSLDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSM--LDE--N----RVMVGNLN-GIPP 489 (643)
Q Consensus 420 ~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~--~~~--~----k~~i~~~g-~i~~ 489 (643)
...|++++.-+..++..+.... -.++...++..|.+.....|+.+++++.+++. .+. + ...+ .| -+..
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~--sg~ll~~ 485 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF--SGLLLLK 485 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--HHHHHHH
Confidence 3445555555556666554333 45567777777777777889999999999862 111 1 1111 11 1223
Q ss_pred HHHHc---ccCChhhHHHHHHHHHHhhcCCC----chHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHH
Q 006494 490 LVNLL---RYGSIRGKKDAATALFNLSINQS----NKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRN 561 (643)
Q Consensus 490 Lv~lL---~s~~~~~k~~A~~aL~nLs~~~e----n~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~ 561 (643)
++... ...+.+++.+|..+|.|+...-+ -.-..+..|.+..++.... ...-.++..|+.++.||-.++...-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 33222 23467889999999999975211 1222233455555544432 3566789999999999999875421
Q ss_pred HH--HhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccC
Q 006494 562 EI--GRLSFIETLVEIIKN-GTPKNKECATSVLLELGLN 597 (643)
Q Consensus 562 ~i--~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~ 597 (643)
.- ....+.+.|..++.+ .+=.+|.+|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 11 222457888888876 4457788888888776654
No 262
>PRK14707 hypothetical protein; Provisional
Probab=83.63 E-value=64 Score=41.69 Aligned_cols=251 Identities=18% Similarity=0.158 Sum_probs=139.7
Q ss_pred HHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CC
Q 006494 380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GT 457 (643)
Q Consensus 380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~ 457 (643)
.++..|.......+..+..+ ...+|..++. +-+-++.....+++..|.....++.....-++...+...+.-|.. .+
T Consensus 183 ~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~ 261 (2710)
T PRK14707 183 AVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWAD 261 (2710)
T ss_pred HHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCC
Confidence 34444433332334444444 3334444444 444456566667777666544444444444466667777777765 34
Q ss_pred HHHHHHHHHHHHH-ccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH-hhcCCCchHHHHhcCcHHHHHHHh
Q 006494 458 NEARENSAAALFS-LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN-LSINQSNKSRAIKAGIIPSLLKLL 535 (643)
Q Consensus 458 ~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~en~~~iv~~G~v~~Lv~lL 535 (643)
..+..+++..|.. |+.....+..+...+.-..|-.+-+=.+..+...|+..|.. |...++-+ .-++.-.+..+++-|
T Consensus 262 ~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~~~~~~~~LNal 340 (2710)
T PRK14707 262 TPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALNARGLSTALNAL 340 (2710)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccchHHHHHHHHHh
Confidence 5556666666553 44444445444443333333333344466677777666654 55444444 334445566667777
Q ss_pred cc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Q 006494 536 ED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYE 612 (643)
Q Consensus 536 ~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~ 612 (643)
+. ++..+.+.|.++-..|+.+++-+..+- ..++..++.-|.. .....+..|+..|..=...+++....+-..|+-.
T Consensus 341 sKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van 419 (2710)
T PRK14707 341 SKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSN 419 (2710)
T ss_pred hcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHH
Confidence 65 344556666677778888888887774 3455666666655 3345566667777665556666666555566666
Q ss_pred HHHHHHhhCCHHHHHHHHHHH
Q 006494 613 HLVEITRCGTNRGQRKANSLL 633 (643)
Q Consensus 613 ~L~~ll~~g~~~~k~~A~~lL 633 (643)
.|-.+..=....+.+.|+..|
T Consensus 420 ~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 420 ALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred HHHHhhcCCcchhHHHHHHHH
Confidence 666666655555555554443
No 263
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=65 Score=37.27 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=52.9
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHH
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRA 522 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~i 522 (643)
.+|..+..+|.+.+..++..||++|..|+.++..-. .+...+++++... +-.+|.-.+.-|..|. .+...+
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~i 314 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKI 314 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHH
Confidence 355666666666666666666666666654332110 1223444444222 2223333333333332 111111
Q ss_pred HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
. .|.+--++++|.+++-++...++.+..-|+++
T Consensus 315 l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 315 L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 1 34455566777777778888888887777775
No 264
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.48 E-value=0.69 Score=47.99 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.5
Q ss_pred cccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
.-.|=||+.=-+|-+++||-|. .|..|-+... -.+..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 4579999999999999999997 8888865544 44678999999875
No 265
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.37 E-value=6.9 Score=46.86 Aligned_cols=139 Identities=24% Similarity=0.210 Sum_probs=103.4
Q ss_pred ChHHHHHHhc----CCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccc
Q 006494 404 GIRPLVQLLS----YPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDEN 477 (643)
Q Consensus 404 ~i~~Lv~lL~----~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~ 477 (643)
..|.++..++ .+++++|..|.-+|..+- .+..... ..++.++.+|. ++++.+|.|++.++..|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4566777774 358999999988888764 2322222 35788999997 67899999999999999864443
Q ss_pred cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 478 RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 478 k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
- .+ ..-+.|...|++.++.+++.|..+|.+|-.+. |+. .|.++.+..+|.++++++.+.|=.....|+..
T Consensus 995 l---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 1 11 12366778888999999999999999997654 333 68999999999999998888887666666654
No 266
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=83.15 E-value=0.66 Score=34.62 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=34.6
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
+..|=.+...-+..++.+|||..++.|..- +.-.-||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 344556777778899999999999998433 22346999999987543
No 267
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=83.14 E-value=0.75 Score=44.63 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=41.1
Q ss_pred cccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCC--CCcccCCCCCCch
Q 006494 272 EFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPK--TGQILDHLSLAPN 325 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~--~~~~l~~~~l~pn 325 (643)
+.+|||+..-.--|.+ ..|.|-|++..|.+.++.. ...||. |-+.+.-..+.-+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d 246 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD 246 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence 4799999999999987 4799999999999999842 355887 6555554444433
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.95 E-value=13 Score=37.74 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHHhhC--ChHHHHHHhcC----CCHHHHHHHHHHHHhcccChhhHHHHHhc-C-ChH
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIANNG--GIRPLVQLLSY----PDSKIQEHTVTALLNLSLDETNKRHIARE-G-AIP 447 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~k~~i~~~-g-~i~ 447 (643)
+.+.-++..+|.+.. ++..-..+...+ ....+..++.. .....+--+++++.|+..++..+..+... + .+-
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL 156 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence 446677777777764 444444444332 24455555433 35667788999999999999998888743 2 333
Q ss_pred HHHHHHccC----CHHHHHHHHHHHHHccccccccch--hhccCChHHHHHHccc--CChhhHHHHHHHHHHhhcCCCch
Q 006494 448 AIIEILQNG----TNEARENSAAALFSLSMLDENRVM--VGNLNGIPPLVNLLRY--GSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 448 ~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~--i~~~g~i~~Lv~lL~s--~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
..+..+... +..++..++.+++|++..-..... =.....+..++..+.. .++++...++.||.+|...++..
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 333333333 567888899999999843221111 1112245566664432 48899999999999999777666
Q ss_pred HHHHh-cCcHHHH
Q 006494 520 SRAIK-AGIIPSL 531 (643)
Q Consensus 520 ~~iv~-~G~v~~L 531 (643)
..... .|+-..+
T Consensus 237 ~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 237 KQLAKSLDVKSVL 249 (268)
T ss_dssp HHHCCCCTHHHHH
T ss_pred HHHHHHcChHHHH
Confidence 66655 3444333
No 269
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.79 E-value=18 Score=39.49 Aligned_cols=186 Identities=19% Similarity=0.200 Sum_probs=107.9
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 362 EICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 362 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
.+..++.... ..++..+..+++.+..+.-.-+..- .+ ...+..+...+ ...+...+..++.++..++ |..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence 4455555443 3345666667776666652211100 00 01222333333 2334445555555554432 333
Q ss_pred HHh-----cCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccc--------cchhhcc----CChHHHHHHcccCChhh
Q 006494 440 IAR-----EGAIPAIIEILQNGTNEARENSAAALFSLSML-DEN--------RVMVGNL----NGIPPLVNLLRYGSIRG 501 (643)
Q Consensus 440 i~~-----~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~--------k~~i~~~----g~i~~Lv~lL~s~~~~~ 501 (643)
++. ...+..++.+|.+ ++....+|..+.-|..+ ++. -..+... ..+|.|++-.++.+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 331 1235556666655 45566677777776554 221 1122222 35677777777766668
Q ss_pred HHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 006494 502 KKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASHP 557 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~ 557 (643)
|.+-+.||.++..+-+...-+-+ ...+|.|++-|..++..+...++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88889999999886665444444 568888999998788889999999999888864
No 270
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.39 E-value=2.6 Score=27.42 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSK 390 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~ 390 (643)
+|.+++.+++.++++|..|+..|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999998875
No 271
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.29 E-value=9.1 Score=30.72 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCH
Q 006494 543 VDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 543 ~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~ 599 (643)
...|++++.++++.+.|...+-+.++++.++++..+ .....|--|..+|..+++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 467999999999999999988888999999999876 457889999999988887543
No 272
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.23 E-value=0.91 Score=47.29 Aligned_cols=49 Identities=14% Similarity=0.397 Sum_probs=33.9
Q ss_pred CcccCccCcccccCC---e-ecCCcccccHHhHHHHHhcC--CCCCCCCCcccCC
Q 006494 271 HEFLCPVTLEIMTDP---V-IVATGQTYERESIQRWLNSN--HKTCPKTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dP---v-~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~ 319 (643)
-.-.|.||-+..-.- - |-.|||+|.--|+.+||..- +++||.|+-.+..
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 345688885443211 1 23599999999999999843 3579999955553
No 273
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=81.48 E-value=24 Score=41.63 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=112.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcCCCchHHHHhcC
Q 006494 448 AIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSINQSNKSRAIKAG 526 (643)
Q Consensus 448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G 526 (643)
.+-.-+.+.++.-|..|+.-+.............+..|-+-.++... .+.+..+...|+..|..++..-..-..=...+
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 33333445556556555555544332222111112234445555544 34477788888888888886322223333457
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAA 605 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~ 605 (643)
+.+.++.-+.+....+.+.++.++-..+.. ..-....+.+..++++++|..+......+.......+ .....-
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 888999999887778888888777665551 1112456778888999999999887776665544333 211111
Q ss_pred HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 606 LQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 606 ~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.-.+++|.++....+.+..+|..|.+.+-.+-
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 11357888888888888888988887765443
No 274
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=80.91 E-value=66 Score=33.34 Aligned_cols=214 Identities=17% Similarity=0.165 Sum_probs=140.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-----hCChHHHHHHhcCCC-HHHHHHHHHHHHhcccC
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-----NGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLD 433 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-----~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~ 433 (643)
.+.+..|++.+...+.+.+..++....++-+..-..|...++ ...+..|+.- ..+ +++..++-..|..-..+
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence 346677888888777777777777777776665555555443 1223333332 122 44444444445444455
Q ss_pred hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhcc---CCh-HHHHHHcccCChhhHHHHHHH
Q 006494 434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNL---NGI-PPLVNLLRYGSIRGKKDAATA 508 (643)
Q Consensus 434 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~---g~i-~~Lv~lL~s~~~~~k~~A~~a 508 (643)
+.....|..+..+......++.++-++..-|.++...+..... ....+... ..+ +.--.++.+++.-.++.+..+
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 6666666677778888888888877777777777777643222 22222221 122 336677899999999999999
Q ss_pred HHHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh----hHHHHHhcCcHHHHHHHHh
Q 006494 509 LFNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPE----GRNEIGRLSFIETLVEIIK 577 (643)
Q Consensus 509 L~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~----~~~~i~~~g~i~~Lv~lL~ 577 (643)
|..+.....|...|.. ...+..+..+|.++....+-+|..+-+....++. .+..+++. =+.|++++.
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l~ 310 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKLLELLH 310 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHHHHHHH
Confidence 9999998888776654 4678899999999888999999999998888753 33333332 345555554
No 275
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.57 E-value=8.6 Score=35.87 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHhhcC--CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHH
Q 006494 365 SLIQNLSS--SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIA 441 (643)
Q Consensus 365 ~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~ 441 (643)
.++..|.. ..+++|..++-.+..+- +..+..+.+ -.-+++-..+..++.+....++.++..|- ..++....+.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34444432 34456666555554442 222222221 12234444555544556667777776654 4566666666
Q ss_pred -hcCChHHHHHHHc--cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-Chh-hHHHHHHHHHH
Q 006494 442 -REGAIPAIIEILQ--NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIR-GKKDAATALFN 511 (643)
Q Consensus 442 -~~g~i~~Lv~lL~--~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~-~k~~A~~aL~n 511 (643)
..|.++.++.++. ..+...+ .++.=+.+.+..++.+.......+++.|-++++.+ +.. ++..|+..|.-
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~-~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQ-KAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHH-HHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHH-HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7899999999998 4444444 44444555566677666666677889999999644 555 67777776653
No 276
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.01 E-value=24 Score=41.29 Aligned_cols=90 Identities=23% Similarity=0.228 Sum_probs=64.4
Q ss_pred HHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH--HHHHHHHhcCCh-H
Q 006494 508 ALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFI--ETLVEIIKNGTP-K 582 (643)
Q Consensus 508 aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i--~~Lv~lL~~~s~-~ 582 (643)
+|+++.. +++++..+++.|++..+...+.. .+..+...++.++.|++...+.+....-...+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888886 77889999999999999999976 56788999999999999876544333222222 233334444443 5
Q ss_pred HHHHHHHHHHHhccC
Q 006494 583 NKECATSVLLELGLN 597 (643)
Q Consensus 583 ~ke~A~~~L~~L~~~ 597 (643)
.-.+|+.+|..+...
T Consensus 574 rsY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 574 RSYNAASILALLLSD 588 (699)
T ss_pred HHHHHHHHHHHHHhC
Confidence 566788888877765
No 277
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=1.5 Score=45.55 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=46.4
Q ss_pred cCccCccccc------CCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC-----CCCCCchhhhHHHHHHH
Q 006494 274 LCPVTLEIMT------DPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD-----HLSLAPNYALRNLIVQW 335 (643)
Q Consensus 274 ~Cpi~~~~m~------dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~-----~~~l~pn~~lr~lI~~w 335 (643)
.|-||.+-++ -|-++.||||+|..|+.+.+..+...||+||.+.. ...+..|..+-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4666655544 46777899999999999999888888999999843 23456677777777654
No 278
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.02 E-value=4.3 Score=43.89 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhhhChhhHH-HHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc----ChhhHHHHHh--cC-ChHH
Q 006494 377 IKRDSVMKIRMLSKENPDNRI-LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL----DETNKRHIAR--EG-AIPA 448 (643)
Q Consensus 377 ~~~~Al~~L~~La~~~~~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~k~~i~~--~g-~i~~ 448 (643)
++..|.+.+..+.-+ +..|. ...-..+...+...|.+.....|+++..++.|++. +-.+.....+ .| .+..
T Consensus 407 v~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 334455555444422 22222 22223445556666766667888999999998752 1111111110 11 1222
Q ss_pred HHHHHc---cCCHHHHHHHHHHHHHcccccc--ccchhh--ccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcCCCchH
Q 006494 449 IIEILQ---NGTNEARENSAAALFSLSMLDE--NRVMVG--NLNGIPPLVNLL-RYGSIRGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 449 Lv~lL~---~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~--~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~~en~~ 520 (643)
++..-. .....++.+|..+|.+++..-+ .+-..+ ..|.+..++... ..+.-.++-+|+.++.||-.++..+-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222111 1346788899999999873222 111111 134444444333 45577899999999999998876532
Q ss_pred HH--HhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 006494 521 RA--IKAGIIPSLLKLLED-KALGMVDEALSILQLLASH 556 (643)
Q Consensus 521 ~i--v~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~ 556 (643)
.- ...-+++.|..++.+ .|-.+...|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 22 234477888888876 5556778888888766554
No 279
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.40 E-value=11 Score=34.46 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|.++++.++..|+..|-.+.+.. ...+..++..+.+..|++++. ..++.++..++..+.+.+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999998763 456777788889999999887 457788999999888765
No 280
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.36 E-value=65 Score=37.90 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=158.1
Q ss_pred chhhhHHHHHHHHhhccccC-CCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-ChhhHHHHHh
Q 006494 324 PNYALRNLIVQWCEKNNVEL-PKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKE-NPDNRILIAN 401 (643)
Q Consensus 324 pn~~lr~lI~~w~~~~~~~~-p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~ 401 (643)
++...+.++.+||..-...+ |. .. ....++.....++...++.+..++.....++.. +...+..+..
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~-~~----------~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~ 396 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPS-AT----------RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD 396 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccc-cC----------cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence 44566777777775422111 20 00 012345556666666667777766666655532 1122344444
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccc
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRV 479 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~ 479 (643)
...+|.+-.+..+.+..++...+....+++- .+ +..- -.-.++.++..++...++++.+....+..+-.+.+ .-.
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence 5556777777777777776666555555431 11 1111 12356666667777778888777766655433332 233
Q ss_pred hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494 480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG 559 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~ 559 (643)
......-++.++.+-.....+++......+..++.... ..+...-..+.+..-+.+..-.+.+.|...+..++..-.
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G- 550 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG- 550 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-
Confidence 33344566777777666677888888888877776443 223222222222222333334567777777777766432
Q ss_pred HHHHHhcCcHHHHHHHHhcCC---hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 560 RNEIGRLSFIETLVEIIKNGT---PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 560 ~~~i~~~g~i~~Lv~lL~~~s---~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
.+.- ....++.++.+....+ ...--.++..|..++... +.....+|.+..+..+..+.+|-+++..|..+
T Consensus 551 ~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 551 SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 1111 1234555554444332 223334444444444422 22234678888888888888888888887766
Q ss_pred hh
Q 006494 637 SK 638 (643)
Q Consensus 637 ~~ 638 (643)
..
T Consensus 624 ~~ 625 (759)
T KOG0211|consen 624 LK 625 (759)
T ss_pred Hh
Confidence 54
No 281
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.86 E-value=18 Score=42.09 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh
Q 006494 456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL 535 (643)
Q Consensus 456 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL 535 (643)
+-+.++..+...|..+...-+.+..+...+++...++.|++.++-+--+|+..+..||-- .....+|.|.+.-
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 334456666667776665444555566678899999999999888888888888888742 2345666676644
Q ss_pred ccC-C---hhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Q 006494 536 EDK-A---LGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGV 610 (643)
Q Consensus 536 ~~~-~---~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~ 610 (643)
.+. + .+..-..=.++.+++.. .+......+ -.+...+..+++.+...|..++++|.++|...........- .+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HH
Confidence 331 1 11111122334443332 221111111 23344445555444555888889999998754322222111 12
Q ss_pred HHHHHHHH-hhCCHHHHHHHHHHHHHhhh
Q 006494 611 YEHLVEIT-RCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 611 i~~L~~ll-~~g~~~~k~~A~~lL~~l~~ 638 (643)
...++.+. .+|..-.||.|+-++..+-.
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 33333333 46788999999999887643
No 282
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=77.70 E-value=40 Score=36.77 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=110.0
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-ccCChhhHHHHH----HHHHHhhc-CCC
Q 006494 445 AIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAA----TALFNLSI-NQS 517 (643)
Q Consensus 445 ~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~----~aL~nLs~-~~e 517 (643)
.+..++.+..+. +...+..++..+..|.--...-. .-...+..+...+ .......+..+. |+...|.. +++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 455566655443 46666667776666641100000 0012233333333 222333333333 34444443 222
Q ss_pred chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhh-------------HHHHHhcCcHHHHHHHHhcCChHH
Q 006494 518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEG-------------RNEIGRLSFIETLVEIIKNGTPKN 583 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~-------------~~~i~~~g~i~~Lv~lL~~~s~~~ 583 (643)
.- ...+..|+++|.+ +.+-..|+..+..|... ++. ++.+. ...+|.|++-.++.+...
T Consensus 268 ~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 268 LA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEI 339 (415)
T ss_pred hH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhh
Confidence 22 2245567777765 55667777777777776 331 33333 256888888888877778
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 584 KECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 584 ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
|.+-+.+|..+..+-|.....-.-..++|.|++-+...++..+..+..+|..+-+
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999877554433335688999998888888999999998887654
No 283
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.62 E-value=13 Score=38.36 Aligned_cols=143 Identities=18% Similarity=0.173 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
....+...+..|.+.+|+....++.-|+.|+...++...... ...|-.+++-++.....+-..|+.++..+...-.++-
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999865554333322 2367778888888888888888888877754333322
Q ss_pred HHHhcCChHHHHHHH-ccC---CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 439 HIAREGAIPAIIEIL-QNG---TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL-~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
.- .++.++..| ..+ +.-+++.|-.+|..+...-. ..-+++.|+..++..+++++..++.+..+.
T Consensus 165 ~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 165 DQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 21 344444443 222 34567777777776642111 123567777778888888877777665544
No 284
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=77.56 E-value=1e+02 Score=36.41 Aligned_cols=220 Identities=16% Similarity=0.107 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhHHHHH---hcCChHH
Q 006494 373 SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNKRHIA---REGAIPA 448 (643)
Q Consensus 373 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k~~i~---~~g~i~~ 448 (643)
..+....++...+...++....+...+.. .....+..+. +..+.++..|+.++...+ +..+. -.+.++.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILDG 534 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHHH
Confidence 45555556666666555433333222211 1222333333 233445566666665544 12111 3566777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc--cCChhhHHHHHHHHHHhhcCCCchHHHHhcC
Q 006494 449 IIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR--YGSIRGKKDAATALFNLSINQSNKSRAIKAG 526 (643)
Q Consensus 449 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G 526 (643)
|.++....+.++...-.-+|......+.......+....|..+.+.- +.++.+...+-.++..|+....|...+. .-
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HH
Confidence 77777666667666666666666655554444444556677776653 3467677777777777876444444433 34
Q ss_pred cHHHHHHHhccCC----hhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHH-HhcCChHHHHHHHHHHHHhccCCH
Q 006494 527 IIPSLLKLLEDKA----LGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEI-IKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 527 ~v~~Lv~lL~~~~----~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~l-L~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.+|.+++.|..+. ......|+.+|..+..+ ++--+.+.. -+.|++.+. +++++...-++|-.+|..+-..+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 7999999997644 67888899999888876 333333332 356777665 566777777888888888877655
Q ss_pred HH
Q 006494 600 YF 601 (643)
Q Consensus 600 ~~ 601 (643)
+.
T Consensus 693 eq 694 (1005)
T KOG2274|consen 693 EQ 694 (1005)
T ss_pred HH
Confidence 43
No 285
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.49 E-value=1.1e+02 Score=35.60 Aligned_cols=207 Identities=14% Similarity=0.153 Sum_probs=128.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCC
Q 006494 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG 486 (643)
Q Consensus 407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~ 486 (643)
-|..+|.+.....+..|+.-+.++-....+ -..++|.+|+-..+.+.+++...---|...+..+.+-.. =.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LS 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LS 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----ee
Confidence 477888887666777777666655433333 123678888888888999887666555555533332211 14
Q ss_pred hHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHh
Q 006494 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGR 565 (643)
Q Consensus 487 i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~ 565 (643)
|..+-+-|.+.++-++..|+.+|..+ |.-++..=++-.+-+...+..+.+...|+.++-.|=+- ++-...
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q--- 180 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ--- 180 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH---
Confidence 56666677888888887777776543 33333333334445556667788888888877777664 444433
Q ss_pred cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 566 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.+..+-.+|.+.++-+--.|+.+.-.+|-.. ...+ .+-...|+.++..-++.++-..-.+|-.-.|
T Consensus 181 --L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 181 --LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred --HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 3445556778888988889999988888643 2211 2345566666666666666555555544433
No 286
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.42 E-value=1.3e+02 Score=33.85 Aligned_cols=87 Identities=18% Similarity=0.100 Sum_probs=53.5
Q ss_pred HHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHH
Q 006494 382 VMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEAR 461 (643)
Q Consensus 382 l~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~ 461 (643)
++.+..+.+.++..+..+. |.|-.-|++.-..++-.+++++..++...- -...++ ..+..|-.+|+++....|
T Consensus 248 vr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 248 VRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcchHHHH
Confidence 3444555666666555543 556666666556667777777776653221 111111 245666667778888889
Q ss_pred HHHHHHHHHccccc
Q 006494 462 ENSAAALFSLSMLD 475 (643)
Q Consensus 462 ~~Aa~~L~~Ls~~~ 475 (643)
-.|..+|-.|+...
T Consensus 321 FsA~Riln~lam~~ 334 (898)
T COG5240 321 FSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHhhC
Confidence 89999999987543
No 287
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.40 E-value=1.8 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=41.6
Q ss_pred ccCccCcccccC---CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494 273 FLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320 (643)
Q Consensus 273 f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 320 (643)
..|.|++++|-| |++.|.|++|-..+|+.|=...+-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 578999999986 999999999999999999886558899998877643
No 288
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.40 E-value=1.5e+02 Score=34.50 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHH
Q 006494 373 SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEI 452 (643)
Q Consensus 373 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l 452 (643)
-++..|.--+.-|+.-+..++.-+... |..+..+|.+.++.+...|...|.+|+.++..-..- ...++.+
T Consensus 218 ~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l 287 (948)
T KOG1058|consen 218 FNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDL 287 (948)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHH
Confidence 345666666777777776566555443 567888998888888888888888888776443222 1223333
Q ss_pred Hcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 453 LQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 453 L~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
+.. .+..++....--|..+. ..-..+. .|.+--.+.+|.+.+.+++..++.....|++++
T Consensus 288 ~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 288 LVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 321 11122211111122221 1111111 134445556677778888888888877777654
No 289
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.26 E-value=1.7e+02 Score=35.07 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=81.7
Q ss_pred hCChHHHHHHhcC--------CCHHHHHHHHHHHHhcc----cChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHH
Q 006494 402 NGGIRPLVQLLSY--------PDSKIQEHTVTALLNLS----LDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALF 469 (643)
Q Consensus 402 ~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs----~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~ 469 (643)
.|.++.++..|.+ .++.-.+-|+.++.+|+ ..+..+..+ +.=.+..+.-.++++..-.|..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 3567778887762 24555667777777775 122222222 2223444555567777778888999999
Q ss_pred Hccccc-cccchhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHhc---CcHHHHHHHhcc
Q 006494 470 SLSMLD-ENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIKA---GIIPSLLKLLED 537 (643)
Q Consensus 470 ~Ls~~~-~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~~---G~v~~Lv~lL~~ 537 (643)
.++..+ .....+ ..++....+.|. +....++..|+.||..+-++.+....-+.+ +.++.|+.+...
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 998322 232222 346677777777 557789999999999988766654333333 344444444444
No 290
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.02 E-value=1.7e+02 Score=35.01 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=72.4
Q ss_pred HHHHHHHHhhc------CC--CHHHHHHHHHHHHHhhh---hChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 006494 361 EEICSLIQNLS------SS--QLNIKRDSVMKIRMLSK---ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLN 429 (643)
Q Consensus 361 ~~i~~Lv~~L~------s~--~~~~~~~Al~~L~~La~---~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n 429 (643)
+.++++++-|. .. ++.....|+..+..++. .+...+. ..+.-.+..+.-.++++---.+..|++.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 46667777665 11 22233346666655542 1111122 2233345566667778777889999999998
Q ss_pred cc-cChhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHcccccc-ccchhhc--cCChHHHHHHc
Q 006494 430 LS-LDETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDE-NRVMVGN--LNGIPPLVNLL 494 (643)
Q Consensus 430 Ls-~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--~g~i~~Lv~lL 494 (643)
.+ .+=.+...+.+ ++....+.|. +.+..++..||-+|..+-.+.+ +...+.. .+.++.|+++.
T Consensus 489 ~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 87 33223332222 4666777777 5566778888888877754443 3343333 23444444443
No 291
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.97 E-value=38 Score=38.97 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=76.2
Q ss_pred cCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchH
Q 006494 443 EGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 443 ~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~ 520 (643)
.++|..|+++ ..+.+.++|..|+-+|....+.+. ...+..+.+|. +.++.++..|+.+|.--|...+++.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4567777777 456788888888888877665443 34577788885 4588899999999998888887776
Q ss_pred HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-C-hhhHHHHHhcCcHHHHHHHHhcCCh
Q 006494 521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-H-PEGRNEIGRLSFIETLVEIIKNGTP 581 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~-~~~~~~i~~~g~i~~Lv~lL~~~s~ 581 (643)
.+ ..|-.+..+...-+...|+-+++.+-. + +..+..+ .++...+.+++.+..+
T Consensus 625 Ai------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 625 AI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred HH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence 54 222223334444455666655554433 2 2222222 2445566666655443
No 292
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.95 E-value=74 Score=36.59 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=79.0
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV 481 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 481 (643)
+|.+..|++...+++..++..++..|.-++....-...-+-.+....+..-+.+..+.+|.+|.-+|..+-.++..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence 4567778888888899999999998887765332233333345566677777777888999999999888532221
Q ss_pred hccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494 482 GNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIK 524 (643)
Q Consensus 482 ~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~iv~ 524 (643)
-+..++..+..+++++ ++++++.| |.|++.++.....+++
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 0124678889999876 67777765 5566655555555553
No 293
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.80 E-value=1.4 Score=48.84 Aligned_cols=38 Identities=29% Similarity=0.628 Sum_probs=31.5
Q ss_pred CcccCccCccccc----CCeecCCcccccHHhHHHHHhcCCCCCC
Q 006494 271 HEFLCPVTLEIMT----DPVIVATGQTYERESIQRWLNSNHKTCP 311 (643)
Q Consensus 271 ~~f~Cpi~~~~m~----dPv~~~~g~t~~r~~I~~w~~~~~~~cP 311 (643)
+-.+|+||...+- .||.+-||||.|+.|.+.-.+. +||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 4568999976664 6999999999999999997764 566
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.49 E-value=16 Score=33.02 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChh-hHHHHHhhCChHHHHHHhcC---CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD-NRILIANNGGIRPLVQLLSY---PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~nLs 431 (643)
.+..+..|-..|+++++.++..|+..|-.+.+.... .+..++....+..|++++.. .+..++..++..+.+.+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999986644 56666666777789999875 47889999999988765
No 295
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.17 E-value=41 Score=39.81 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=108.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCCh---HHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGI---RPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i---~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
+.+-..+.+.+|..+.+|+..+........ .....+.. ..++... .+.+..+...|+..|..++..-.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 344455668899999999998887764322 11222333 3333332 233455555566666555432111111
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CC-C
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQ-S 517 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~-e 517 (643)
=...+.++.|++.++..-..++..+..++-.... .-.-...++....+++++++..+......+.-... .. .
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 1234578888888887766677666665544432 11113456778888899999888876665554443 32 2
Q ss_pred chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
+...-.-.+.++.++....+.+.++...|..++..+-.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 33333345678888888888888888888777766554
No 296
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=76.00 E-value=40 Score=36.35 Aligned_cols=83 Identities=10% Similarity=0.189 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CC---CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHH
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YP---DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAI 449 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~L 449 (643)
-+.+-..|+..+..+....|..-..+.++|.++.++..+. .+ +.++....-.+|..|+.+....+.+.+.+.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 3455666777788887777888888899999999999887 43 4566666667788889999999999999999999
Q ss_pred HHHHccC
Q 006494 450 IEILQNG 456 (643)
Q Consensus 450 v~lL~~~ 456 (643)
++++.+.
T Consensus 202 f~if~s~ 208 (379)
T PF06025_consen 202 FEIFTSP 208 (379)
T ss_pred HHHhCCH
Confidence 9999764
No 297
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.90 E-value=1.5 Score=45.61 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
...|..-.|-||.+=-.+-+.+||||+.| |+.-... ...||+|++...
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 44566667999999999999999999988 5544333 356999998654
No 298
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.68 E-value=2.8 Score=37.29 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=42.1
Q ss_pred CcccCccCcccccCCeec----CCcccccHHhHHHHHh--cCCCCCCCCCcccCCCC
Q 006494 271 HEFLCPVTLEIMTDPVIV----ATGQTYERESIQRWLN--SNHKTCPKTGQILDHLS 321 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~----~~g~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~ 321 (643)
.-+.|-||.+.-.|+..+ .||...|..|....|+ .-++.||.|+..+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 457899999999999986 3899999999998887 33678999988776543
No 299
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=75.58 E-value=44 Score=39.10 Aligned_cols=192 Identities=19% Similarity=0.113 Sum_probs=120.0
Q ss_pred HHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcCChH--HHHHHHccCC-HH
Q 006494 384 KIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREGAIP--AIIEILQNGT-NE 459 (643)
Q Consensus 384 ~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~--~Lv~lL~~~~-~~ 459 (643)
.|.+.+..++++...+.+.|+...+...++. ...+.+..++..+.|++...+++........+. .+-.++...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888899999999999999999999984 456788999999999987766655444222222 2333444444 37
Q ss_pred HHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH-hhcCCCchHHHHhcCcHHH-HHHHhcc
Q 006494 460 ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN-LSINQSNKSRAIKAGIIPS-LLKLLED 537 (643)
Q Consensus 460 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~en~~~iv~~G~v~~-Lv~lL~~ 537 (643)
.-.+|+++|+.+....+.. .. ...+..+...+.. .........++.-...+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~---------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TE---------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---cc---------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 7788888888876543331 11 1111122222222 2223333333333344444 5566644
Q ss_pred -CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006494 538 -KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLE 593 (643)
Q Consensus 538 -~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~ 593 (643)
..++.+--|++++.++... ++.+..+...|+++.+.++-.. .....++.+..++-.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 5667888899999999986 6777777777888877665432 234555555555433
No 300
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=73.37 E-value=1e+02 Score=35.19 Aligned_cols=201 Identities=18% Similarity=0.090 Sum_probs=102.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH----HHHh---cCChHHHHHHHccCCHHHHHHHHHHHHHcc-cc-c
Q 006494 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR----HIAR---EGAIPAIIEILQNGTNEARENSAAALFSLS-ML-D 475 (643)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~----~i~~---~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls-~~-~ 475 (643)
+-.|+++|+.-+.+..+....-+.. .. ...+. .+.. ..++..+.+.++++.....+ ++.++..+. .. .
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~ 389 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLE-AAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhhc
Confidence 4456777776555554444444433 11 22222 2222 34667777777776422211 222222221 11 1
Q ss_pred cccchhhccCChHHHHHHcccC----ChhhHHHHHHHHHHhh----cCCCchHHHHhcCcHHHHHHHhcc----CChhhH
Q 006494 476 ENRVMVGNLNGIPPLVNLLRYG----SIRGKKDAATALFNLS----INQSNKSRAIKAGIIPSLLKLLED----KALGMV 543 (643)
Q Consensus 476 ~~k~~i~~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs----~~~en~~~iv~~G~v~~Lv~lL~~----~~~~~~ 543 (643)
.. ...+..+..++.+. ...++..|+.++.+|. .+.+.+...+....++.|.+.|.. .+..-.
T Consensus 390 Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 390 PT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred CC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 11 23567777777654 3445556666666554 333333233334467777776643 233334
Q ss_pred HHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh---cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh
Q 006494 544 DEALSILQLLASHPEGRNEIGRLSFIETLVEIIK---NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 544 ~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~---~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 620 (643)
..++.+|+|+... ..++.+..++. ..+...|-.|+.+|..++...+.. +.+.|+.+..+
T Consensus 464 ~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n 525 (574)
T smart00638 464 QLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLN 525 (574)
T ss_pred eeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcC
Confidence 4567777765542 34455555554 234678889999999887654432 33445555544
Q ss_pred C--CHHHHHHHHHH
Q 006494 621 G--TNRGQRKANSL 632 (643)
Q Consensus 621 g--~~~~k~~A~~l 632 (643)
. ++.+|-.|.-+
T Consensus 526 ~~e~~EvRiaA~~~ 539 (574)
T smart00638 526 RAEPPEVRMAAVLV 539 (574)
T ss_pred CCCChHHHHHHHHH
Confidence 3 34555444443
No 301
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.41 E-value=10 Score=31.93 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL 432 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 432 (643)
+..+...+..|.++.+.+|..++..|+.|..... ...+-..+.+..+...|+++|+-+--+|+..|..|+.
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3567788888999999999999999999986554 1112224566778888999999999999999988763
No 302
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.18 E-value=1e+02 Score=31.33 Aligned_cols=209 Identities=15% Similarity=0.077 Sum_probs=119.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhcccChhhHHHHHhcCC
Q 006494 368 QNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLSLDETNKRHIAREGA 445 (643)
Q Consensus 368 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~ 445 (643)
..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++.++..|...... ..+.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~~~~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----SPES 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----Chhh
Confidence 45778899999999888886654433221 112224555555533 3566665556666665522211 1111
Q ss_pred hHHHHHH-Hcc-----CCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCC
Q 006494 446 IPAIIEI-LQN-----GTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 446 i~~Lv~l-L~~-----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~ 516 (643)
...+++. .++ -....|...-.++..|... ....+.. .+.+..+++++..+ +|+....+...+..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 2222222 222 2234566666666666432 3333433 34678888888654 8888888888777776533
Q ss_pred CchHHHHhcCcHHHHHHHhcc-------C---Ch-hh--HHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHH
Q 006494 517 SNKSRAIKAGIIPSLLKLLED-------K---AL-GM--VDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKN 583 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~~-------~---~~-~~--~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ 583 (643)
+. ....+.+.+.+.. + ++ ++ .+...+....|++++.- ..-++|.|++-|.+.++.+
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHH
Confidence 31 3344455555533 1 11 12 23334444455555422 2357999999999999999
Q ss_pred HHHHHHHHHHhccC
Q 006494 584 KECATSVLLELGLN 597 (643)
Q Consensus 584 ke~A~~~L~~L~~~ 597 (643)
|.-++.+|...+..
T Consensus 225 K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 225 KLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876654
No 303
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.04 E-value=21 Score=32.84 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 431 (643)
.+..+..|.+.|.+.++.++..|+..|-.+.+... ..+..++....+..|++++.. .+..++..++..+...+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999987654 346667778889999999987 68889999999888765
No 304
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=71.59 E-value=1.5e+02 Score=31.76 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=61.7
Q ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CCHHHHHHH-HHHHHHccccccccchh
Q 006494 405 IRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GTNEARENS-AAALFSLSMLDENRVMV 481 (643)
Q Consensus 405 i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A-a~~L~~Ls~~~~~k~~i 481 (643)
+.+++.=+.. ....++..++--|..-..++..+..+...|.++.+++.+.. ++......+ +++++-|+.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 5566666653 35577888888888778899999999999999999999954 444244444 44444455444444444
Q ss_pred hccCChHHHHHHcc
Q 006494 482 GNLNGIPPLVNLLR 495 (643)
Q Consensus 482 ~~~g~i~~Lv~lL~ 495 (643)
-+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566677788877
No 305
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=71.50 E-value=63 Score=35.31 Aligned_cols=144 Identities=19% Similarity=0.054 Sum_probs=89.0
Q ss_pred hHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHH-HHHHHHhCChhhHHHHH
Q 006494 487 IPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEAL-SILQLLASHPEGRNEIG 564 (643)
Q Consensus 487 i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al-~iL~nLa~~~~~~~~i~ 564 (643)
+..++..|.. .+...|+.|+..|..+|.+...+-.=-..-++..+++.-.+..+++...|. .++..++++..-
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----- 405 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----- 405 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----
Confidence 3556677766 678889999999999998765543322234566666666665555554443 445555555322
Q ss_pred hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
-.|..+..++.+.+...--.++..+-.++..=...-..-+-..+.|.+++--.+.+..+|+.|+-.|-.|.
T Consensus 406 --~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 --QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred --hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 23455556565544333334445566666543222222222568888888888889999999998887664
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.45 E-value=12 Score=43.32 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=34.7
Q ss_pred CcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCc
Q 006494 271 HEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQ 315 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~ 315 (643)
..-.|..|.-.+.=|++- .|||.|.++|.+ .+...||.|.-
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 445899999999999875 899999999988 45688999975
No 307
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=71.43 E-value=1.1e+02 Score=30.39 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=78.9
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHh
Q 006494 364 CSLIQNL-SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR 442 (643)
Q Consensus 364 ~~Lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~ 442 (643)
+.|+..+ +..++..+...++.|..++.++..+... ++..|..+...+..+.+.-+.+.+..+...++ +..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH---
Confidence 3444433 3567888889999999998765222222 23456666666656654455555555442221 111
Q ss_pred cCChHHHHHHH--------ccC--CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHH
Q 006494 443 EGAIPAIIEIL--------QNG--TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFN 511 (643)
Q Consensus 443 ~g~i~~Lv~lL--------~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~n 511 (643)
+.+..++..+ .++ ..+.....++++..++....+ --...++.+..+| ++.++..+..|+.+|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444444431 111 234444556677777654444 1123677888888 67788888888889998
Q ss_pred hh
Q 006494 512 LS 513 (643)
Q Consensus 512 Ls 513 (643)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 88
No 308
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.38 E-value=90 Score=35.94 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
-.+.+..+++...+.+..+|.+.+..|+.+...+. -+..-+-.+....+..-+.+..+.++..|+.+|..+-.++.+-
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 35678888888889999999999999998884322 2222233455566666666667899999999998876433221
Q ss_pred HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhh
Q 006494 439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
+..++..+..++++ +++++|. ++|.+++.++...-.|.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIV 199 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHH
Confidence 12245566677765 4688884 45666766555444443
No 309
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=70.92 E-value=39 Score=31.60 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=81.4
Q ss_pred CChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 485 NGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 485 g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
..++.|+++|+++ +...+++++++|..|-.-++.+-+.+..+.-... -.+.+....+..+ .+....+ .-+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l---~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL---PMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH---hhccCCC-chHHH
Confidence 3467788888776 6889999999999998777766664432111000 0111112222222 1111111 22333
Q ss_pred HhcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494 564 GRLSFIETLVEIIKNGTP-KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 635 (643)
.-.-++..|+.+|++.+- .-...++.++..+....+..+...+ .-++|.++..+.+.++..++.-..-|..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334578889999987653 3344566676666644333333222 3489999999998888767664444433
No 310
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.25 E-value=72 Score=37.71 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=94.6
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNE 562 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~ 562 (643)
..+|.|++.....+...|-+=..+|.++..+-+...-+=+ ...+|.|++.|.-++..++-.++.++..+... +.-...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 4778888888866667777888888888775544322222 45778888888777777777888888766654 222222
Q ss_pred HHhcCcHHHHHHHHhcCC---hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHH
Q 006494 563 IGRLSFIETLVEIIKNGT---PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANS 631 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~s---~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~ 631 (643)
-++ -.+|.++.+=.+.+ -.+|+-|+..|..|.+.-|.....--+..++..|...+.+.--.+|+.|..
T Consensus 947 ~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 947 HLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 222 35677766655543 568999999999999854432222223456667777666655555666654
No 311
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.07 E-value=1.5e+02 Score=37.34 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred HHHHHHHhh----cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhh-
Q 006494 362 EICSLIQNL----SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN- 436 (643)
Q Consensus 362 ~i~~Lv~~L----~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~- 436 (643)
.++.||-.| -.++..+|..-......|.. +..+-..-.-.....-|+.-|.+..|++++.++-+|..|-...++
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~-D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT-DSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 344444444 35566666554444444442 221111111123556677777888899999999999998754322
Q ss_pred --HHHHHhcCChHHHHHHHccCCHHHHH---HHHHHHHHccc--cccccchhhccCChHHHHHHc-c----cCChhhHHH
Q 006494 437 --KRHIAREGAIPAIIEILQNGTNEARE---NSAAALFSLSM--LDENRVMVGNLNGIPPLVNLL-R----YGSIRGKKD 504 (643)
Q Consensus 437 --k~~i~~~g~i~~Lv~lL~~~~~~~~~---~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL-~----s~~~~~k~~ 504 (643)
++.+- .....+.+++.+-...+|+ .++.+|..|+. .+... ......++..++.+| . +.-.++++-
T Consensus 1074 ~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-~~~~~~~l~~iLPfLl~~gims~v~evr~~ 1150 (1702)
T KOG0915|consen 1074 QVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-GAKGKEALDIILPFLLDEGIMSKVNEVRRF 1150 (1702)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-cccHHHHHHHHHHHHhccCcccchHHHHHH
Confidence 22222 2344555555443334444 45556666542 11100 000012333333333 2 445688889
Q ss_pred HHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc
Q 006494 505 AATALFNLSINQSNKSRAIKAGIIPSLLKLLED 537 (643)
Q Consensus 505 A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~ 537 (643)
++.++.-|+.+.+..-+---...+|.|++.+..
T Consensus 1151 si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 999999998755442222224567777776655
No 312
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=69.86 E-value=72 Score=36.58 Aligned_cols=334 Identities=13% Similarity=0.114 Sum_probs=164.9
Q ss_pred ccCcccccCCeec-CCccccc----HHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccccCCCCCCCC
Q 006494 276 PVTLEIMTDPVIV-ATGQTYE----RESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNT 350 (643)
Q Consensus 276 pi~~~~m~dPv~~-~~g~t~~----r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~~p~~~~~~ 350 (643)
++...-+.+|..+ +++-++| .-+|.+-++ | .|+.. ..+.....+| +..|..+|++-+..--.++...
T Consensus 165 ~~~~~s~~~P~~~~~s~~s~D~~~Lg~li~el~n-g--~~~~~-~~~~~~~~ip----k~~~~~~~k~~~~~~~~r~n~~ 236 (690)
T KOG1243|consen 165 LYLIESFDDPEEIDPSEWSIDSWGLGCLIEELFN-G--SLLTK-TDLSNTGKIP----KALIELYCKKLGATELKRPNKL 236 (690)
T ss_pred chhhhcccChhhcCccccchhhhhHHHHHHHHhC-c--ccCcc-hhhhccCccc----hhHHHHHHHHhccccccccchh
Confidence 5566777888865 4432222 223333333 2 34432 2344455566 6667777765443311111011
Q ss_pred C------CCC-CcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHH
Q 006494 351 G------SDA-SSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHT 423 (643)
Q Consensus 351 ~------~~~-~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a 423 (643)
+ ... .....--.+-..+..+...+.+.+.+=...|.. ..+..-..++..-..+.|+..+..++ .-...
T Consensus 237 ~~~~~~~~~~gff~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ 311 (690)
T KOG1243|consen 237 RFILECRLLGGFFRNDFVDTLLFLEELRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDF 311 (690)
T ss_pred hHHHHHHhccccccchHHHHHHHHHhcccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhh
Confidence 0 000 000001122233344444555555443333332 22222333444455667777766655 22233
Q ss_pred HHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcc-ccccccchhhccCChHHHHHHcccCChhhH
Q 006494 424 VTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGK 502 (643)
Q Consensus 424 ~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k 502 (643)
+..|..+...-+... ...+.+|.|+++++..+..+| ...|.++- ..+..-..+.....+|.+..-+.+.++..+
T Consensus 312 ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR---~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lr 386 (690)
T KOG1243|consen 312 LTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIR---LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLR 386 (690)
T ss_pred hhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHH---HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHH
Confidence 444443322111111 456789999999999987776 33343432 122344556667788999998999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc-HHHHHHHHhcCCh
Q 006494 503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF-IETLVEIIKNGTP 581 (643)
Q Consensus 503 ~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~s~ 581 (643)
...+.++..|+..=.-+ -+....+..+-++-.+....+.....-+|..++.+-. ..++.++ +....+-+++.-.
T Consensus 387 e~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~ 461 (690)
T KOG1243|consen 387 EQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFV 461 (690)
T ss_pred HHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCC
Confidence 99999888876421111 1111122222222223334455555555555555421 1112222 2333444555445
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494 582 KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635 (643)
Q Consensus 582 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 635 (643)
..|..++.+|+..+..-+..-. ..-+.|.+.-+..+...-++..|...++.
T Consensus 462 paR~a~v~~l~at~~~~~~~~v---a~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 462 PARKAGVLALAATQEYFDQSEV---ANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred CchhhhhHHHhhcccccchhhh---hhhccccccccccCcccchhhHHHHHHHH
Confidence 5677777777777665332211 13466666666666666666666665554
No 313
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.82 E-value=1.1 Score=45.00 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=32.3
Q ss_pred cccCccCcccccCCeecCCccc-ccHHhHHHHHhcCC--CCCCCCCcccC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNH--KTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~--~~cP~~~~~l~ 318 (643)
...|.||++.-+|=|.++|||. -|-.| |. ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHHH
Confidence 6789999999999999999995 45555 33 25999998653
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=69.63 E-value=14 Score=32.83 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=52.3
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHH-HHHHH-cCcHHHHHHHHh-----hC---CHHHHHHHHHHHHHhh
Q 006494 568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFI-LAALQ-YGVYEHLVEITR-----CG---TNRGQRKANSLLQHMS 637 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~-~~~~~-~g~i~~L~~ll~-----~g---~~~~k~~A~~lL~~l~ 637 (643)
++..|.+-|...++.+|-+|+.+|..+|..+++.. ..+.+ ..+|..+..+-. .| +..+|..|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45667777788889999999999999998776544 33333 345666665544 33 3578999999999886
Q ss_pred hc
Q 006494 638 KR 639 (643)
Q Consensus 638 ~~ 639 (643)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 53
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.51 E-value=26 Score=31.60 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcCCC--HHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSYPD--SKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs 431 (643)
.+..+..|.+.|++.++.++..|+..|-.+.+.. ...+..+...+++..|+++++... +.++..++..+.+.+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998763 456677778888999999887652 337888888887654
No 316
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=69.35 E-value=1.2e+02 Score=30.02 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC--C-----------h-----hhHHHHHHHHHHHhCChhhH
Q 006494 499 IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK--A-----------L-----GMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--~-----------~-----~~~~~Al~iL~nLa~~~~~~ 560 (643)
......++..+..|..+++....+.+.+.++.+.+.|..- . + .+...=...|+.|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455567778888888888777777889999888888542 1 0 11223357889999999999
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..+-+.+....+..+....+. .....-+|.+|=-...+... ..|-+.+.+|+..+|..|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999889999999998876533 12222244444222222222 23446788999999999999998764
No 317
>PF04641 Rtf2: Rtf2 RING-finger
Probab=69.23 E-value=5.2 Score=40.74 Aligned_cols=36 Identities=22% Similarity=0.507 Sum_probs=32.1
Q ss_pred CcccCccCcccccCCeec-CCcccccHHhHHHHHhcC
Q 006494 271 HEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSN 306 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~ 306 (643)
..+.|+||++.+.+||+. .-|+-|....|-+|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 578999999999999975 569999999999999864
No 318
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.19 E-value=27 Score=31.85 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcC------CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSY------PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs 431 (643)
.+.++..+.+.|.+.++.++..|+..|-.+.+.. ...+..++..+++..|+++++. .+..++...+..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999888743 4456777778888899999963 46788998888887765
No 319
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.97 E-value=5.6 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=22.7
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcC-CCCCCCCCc
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN-HKTCPKTGQ 315 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~-~~~cP~~~~ 315 (643)
+.|.||.|++- -|- ..+.+.+.+.+...+ ...||+|..
T Consensus 1 ~~f~CP~C~~~-~~~------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKG-FSE------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCc-cCH------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46999998873 222 234445555554432 356999975
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.54 E-value=25 Score=31.67 Aligned_cols=72 Identities=24% Similarity=0.183 Sum_probs=57.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhh---CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRC---GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~---g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|-+-|+++++.++..|+.+|-.+..+.+. ....+.....+..|+.++.. .++.+++++..++.....
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888888899999999999999999887765 55555555666678888875 367999999999987764
No 321
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=67.64 E-value=42 Score=28.59 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHH-hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHc
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIA-NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ 454 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 454 (643)
++|.+|+..|..=-.++--.-..++ ..+.+..|++-++.+....++.++..|..|..++.....+.+-|+...+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4667777655422212222222222 344566677777888778889999999999999999999999999988666554
Q ss_pred cCCHHHHHHHHHHH
Q 006494 455 NGTNEARENSAAAL 468 (643)
Q Consensus 455 ~~~~~~~~~Aa~~L 468 (643)
.-++..+...-.++
T Consensus 82 ~~~~~~~~~id~il 95 (98)
T PF14726_consen 82 NVEPNLQAEIDEIL 95 (98)
T ss_pred cCCHHHHHHHHHHH
Confidence 44555554444433
No 322
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.66 E-value=1.4e+02 Score=29.68 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=81.4
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHhcccCh-hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc
Q 006494 406 RPLVQ-LLSYPDSKIQEHTVTALLNLSLDE-TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN 483 (643)
Q Consensus 406 ~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 483 (643)
+.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+..+.+..+...+..+-..+ .+ .+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r--~f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DR--HF- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-ch--HH-
Confidence 33444 445568899999999999998777 33222 3444555556666655444444444442211 11 11
Q ss_pred cCChHHHHHHc--c------cC--ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh-ccCChhhHHHHHHHHHH
Q 006494 484 LNGIPPLVNLL--R------YG--SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL-EDKALGMVDEALSILQL 552 (643)
Q Consensus 484 ~g~i~~Lv~lL--~------s~--~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL-~~~~~~~~~~Al~iL~n 552 (643)
+.+..++..+ + ++ ..+.....+.++..+|...++ -....++.+..+| .+.++..+..++..|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444444441 1 11 233444456788888886666 2234677888888 67777888899999999
Q ss_pred HhC
Q 006494 553 LAS 555 (643)
Q Consensus 553 La~ 555 (643)
|+.
T Consensus 149 Lc~ 151 (234)
T PF12530_consen 149 LCE 151 (234)
T ss_pred HHH
Confidence 994
No 323
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=66.47 E-value=3.9 Score=41.56 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=36.3
Q ss_pred CcccCccCccccc----CCeecCCcccccHHhHHHHHhcCCCCCCCCCc
Q 006494 271 HEFLCPVTLEIMT----DPVIVATGQTYERESIQRWLNSNHKTCPKTGQ 315 (643)
Q Consensus 271 ~~f~Cpi~~~~m~----dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~ 315 (643)
.++-||||.+.+. +|...+|||+.-..|.++....+ .+||.|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3455999987765 67788999999988888888887 99999976
No 324
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.93 E-value=4 Score=43.18 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=27.5
Q ss_pred CeecCCcccccH-----HhHHHHHhc------------CCCCCCCCCcccCCCCC
Q 006494 285 PVIVATGQTYER-----ESIQRWLNS------------NHKTCPKTGQILDHLSL 322 (643)
Q Consensus 285 Pv~~~~g~t~~r-----~~I~~w~~~------------~~~~cP~~~~~l~~~~l 322 (643)
|...+|++.||| .|+-+||.+ |..+||.||.++...++
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 344578888866 699999963 33469999998875543
No 325
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.15 E-value=3e+02 Score=32.23 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=60.7
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccc-----
Q 006494 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRV----- 479 (643)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~----- 479 (643)
.+.+-+.|++....+...|..++.+|..- +-..+.. ++..+=-+++++..-.|-.|..+|..++.......
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 45566677777778888888888887521 1122222 56666667778888889889999998874333221
Q ss_pred ----hhhccC---ChHHHHHHcccCChhhHHHHHHHHHH
Q 006494 480 ----MVGNLN---GIPPLVNLLRYGSIRGKKDAATALFN 511 (643)
Q Consensus 480 ----~i~~~g---~i~~Lv~lL~s~~~~~k~~A~~aL~n 511 (643)
.|.+.+ +-.+...+|+.|+...+..-..-+.+
T Consensus 323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISS 361 (865)
T ss_pred hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 122211 33555666666655444333333333
No 326
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.94 E-value=39 Score=38.59 Aligned_cols=107 Identities=18% Similarity=0.104 Sum_probs=70.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh------cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494 528 IPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR------LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYF 601 (643)
Q Consensus 528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 601 (643)
...++++|.+.+-.+.-..+.+.+|++.+-.....+++ +..+..+++-+.+.+|-.|.+|+.++..+|..+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 34577788766555555557777777765222222222 244566666677789999999999999999765432
Q ss_pred HHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 602 ILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 602 ~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
... ...++.....-+++.+.-+|++|.+++.-|
T Consensus 381 ~~~--r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VGR--RHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cch--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 111 112445555667888999999999988754
No 327
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.64 E-value=34 Score=31.32 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=58.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++..+-.|+.+|-.+..+. ......+...+.+..|+.++.. .++++++++..++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999998888774 4466667777889999998864 467999999999987654
No 328
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.99 E-value=34 Score=31.38 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=59.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+..|..++.. ..+.++++...+++....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 5677788888889999999999999998887654 55566677889999999887 788999999999987654
No 329
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=61.98 E-value=3.1 Score=35.77 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCCCcccCccCcccccCCee--cCCcccccHHhHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVI--VATGQTYERESIQ 300 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~--~~~g~t~~r~~I~ 300 (643)
..+.++-.|++|+.-+.++++ .||||.|..+|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 356777889999999998775 4999999999875
No 330
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=61.22 E-value=28 Score=40.88 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=92.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKR 438 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~ 438 (643)
..+|.|++...+.....+..=+..|...-.+-|. ...+-+ ....|.|+..|+-+|..+|..+.+++.-+. .++.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 4567777777754444444444555544433332 111112 356788899999999999988888876543 2222211
Q ss_pred HHHhcCChHHHHHHHccCC---HHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHH
Q 006494 439 HIAREGAIPAIIEILQNGT---NEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATA 508 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~---~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~a 508 (643)
.-+ .-.+|.++.+=++.+ ..+|+.|..+|..|.. .+...-.-.+..++.+|+..|.+...-+++.|+.+
T Consensus 946 ~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 111 124555555444443 6789999999999987 45554455557789999999988887888888776
No 331
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=60.32 E-value=90 Score=35.93 Aligned_cols=205 Identities=20% Similarity=0.104 Sum_probs=101.8
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH----hc---CChHHHHHHHccCCHHHHHHHHHHHHHccccccc
Q 006494 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA----RE---GAIPAIIEILQNGTNEARENSAAALFSLSMLDEN 477 (643)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~----~~---g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~ 477 (643)
+-.|+++|+.-+.+.......-+..-......+..+. .. .++..+.+++.++..... .|+.+|..|......
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~ 427 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRR 427 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCC
Confidence 4456777766554443333333322111123333322 23 356777777777543222 245555555422100
Q ss_pred cchhhccCChHHHHHHccc----CChhhHHHHHHHHHHhh----cCC------CchHHHHhcCcHHHHHHHhcc----CC
Q 006494 478 RVMVGNLNGIPPLVNLLRY----GSIRGKKDAATALFNLS----INQ------SNKSRAIKAGIIPSLLKLLED----KA 539 (643)
Q Consensus 478 k~~i~~~g~i~~Lv~lL~s----~~~~~k~~A~~aL~nLs----~~~------en~~~iv~~G~v~~Lv~lL~~----~~ 539 (643)
-....+..+..++++ .+..++..|+.++..|. ... ..+...+....++.|...|.. ++
T Consensus 428 ----Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 503 (618)
T PF01347_consen 428 ----PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGD 503 (618)
T ss_dssp ------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-
T ss_pred ----CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 012345666666654 24556666777766664 231 112222334566677766652 44
Q ss_pred hhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHH
Q 006494 540 LGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG---TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE 616 (643)
Q Consensus 540 ~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~---s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 616 (643)
......++.+|+|+.. ...++.|..++... +...|-.|+.+|..+....+.. +.+.|+.
T Consensus 504 ~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~ 565 (618)
T PF01347_consen 504 EEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLP 565 (618)
T ss_dssp HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHH
T ss_pred HHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHH
Confidence 4566778888888753 24677777777665 5677888888888776655532 3455666
Q ss_pred HHhhC--CHHHHHHHHHH
Q 006494 617 ITRCG--TNRGQRKANSL 632 (643)
Q Consensus 617 ll~~g--~~~~k~~A~~l 632 (643)
+..+. +..+|-.|..+
T Consensus 566 I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 566 IFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp HHH-TTS-HHHHHHHHHH
T ss_pred HhcCCCCChhHHHHHHHH
Confidence 65543 34555555433
No 332
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=59.20 E-value=7.9 Score=34.75 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=38.0
Q ss_pred cccCccCcccccC--Cee-cCCc------ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494 272 EFLCPVTLEIMTD--PVI-VATG------QTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324 (643)
Q Consensus 272 ~f~Cpi~~~~m~d--Pv~-~~~g------~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 324 (643)
..-|.||.+-..+ -|+ +++| +-||..|+++|-.. ....|..|...-.-...|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccceEEEEeCCC
Confidence 5679999998887 554 5777 45999999999643 678998876544444444
No 333
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.06 E-value=54 Score=33.93 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=85.3
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG 564 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~ 564 (643)
++...+..|.+++...+.+++..|..|+.++. ....+. ..++-.+++-+++....+...|+.++..+.+.-.. .+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--SID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 45666677788888899999999999887543 222222 23555566666666667888888888877764211 111
Q ss_pred hcCcHHHH-HHHHhcCCh---HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHH
Q 006494 565 RLSFIETL-VEIIKNGTP---KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLL 633 (643)
Q Consensus 565 ~~g~i~~L-v~lL~~~s~---~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL 633 (643)
+ ....+ ..++..++. =+++-|-.+|..+..+-.. .-+++.|....++.+++++.+|....
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccc
Confidence 1 23333 334444433 3577777888777665221 23566777777888888888887544
No 334
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=59.03 E-value=2.4e+02 Score=29.70 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=107.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhccc-Ch-hhHHHHHh--cCChHHHHHHHcc----CC---------HHHHHHHHHH
Q 006494 405 IRPLVQLLSYPDSKIQEHTVTALLNLSL-DE-TNKRHIAR--EGAIPAIIEILQN----GT---------NEARENSAAA 467 (643)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-~~k~~i~~--~g~i~~Lv~lL~~----~~---------~~~~~~Aa~~ 467 (643)
++.+.+.|++....++..++..|..+.. +. .....+.. .--.+.+.+++.. +. ..+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888998888888888899888876 44 33344442 2245566666631 11 1677777776
Q ss_pred HHHccc--cccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHH-hhcCCC----chHHHHhcCcHHHHHHHhccCC
Q 006494 468 LFSLSM--LDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFN-LSINQS----NKSRAIKAGIIPSLLKLLEDKA 539 (643)
Q Consensus 468 L~~Ls~--~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~e----n~~~iv~~G~v~~Lv~lL~~~~ 539 (643)
+..+-. ....+..+.. .+.+..+.+-|..++.++....+.+|.. +...+. .|.++....++..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666532 3335555555 6678889999988888999999888884 444332 3566667778999999776655
Q ss_pred h----hhHHHHHHHHHHHhCChh
Q 006494 540 L----GMVDEALSILQLLASHPE 558 (643)
Q Consensus 540 ~----~~~~~Al~iL~nLa~~~~ 558 (643)
+ .+.+.+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 5 788999999999998754
No 335
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=58.72 E-value=6 Score=31.65 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=29.8
Q ss_pred CCCCCCCcccCCCCCCc--hhhhHHHHHHHHhhccccCCCCCCC
Q 006494 308 KTCPKTGQILDHLSLAP--NYALRNLIVQWCEKNNVELPKKDTN 349 (643)
Q Consensus 308 ~~cP~~~~~l~~~~l~p--n~~lr~lI~~w~~~~~~~~p~~~~~ 349 (643)
..||+|+..+....+.| ...-|..|.+|...++...|.+...
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~ 48 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQP 48 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCc
Confidence 57999999998777666 4667899999999866666766443
No 336
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.19 E-value=2.2e+02 Score=28.98 Aligned_cols=214 Identities=11% Similarity=0.112 Sum_probs=118.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHHccccccccchhhcc
Q 006494 408 LVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQN--GTNEARENSAAALFSLSMLDENRVMVGNL 484 (643)
Q Consensus 408 Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~ 484 (643)
|=..|.++|..++..|+..|..+.. -+... ....-+..|+.++.+ .+......+...+..|..... ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSP 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CCh
Confidence 4456778889999999888776432 12111 122235566666543 244444444555555542221 111
Q ss_pred CChHHHHHH-ccc-----CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCCh
Q 006494 485 NGIPPLVNL-LRY-----GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHP 557 (643)
Q Consensus 485 g~i~~Lv~l-L~s-----~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~ 557 (643)
+....++.- .++ -....+..+...|..|..+......-+..+.+..+++.+.. .+|.....+..++..+...-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 112222222 222 23456667777777776553322222335677788888865 68888888888888887753
Q ss_pred hhHHHHHhcCcHHHHHHHHh----------cCCh--HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHH
Q 006494 558 EGRNEIGRLSFIETLVEIIK----------NGTP--KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRG 625 (643)
Q Consensus 558 ~~~~~i~~~g~i~~Lv~lL~----------~~s~--~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~ 625 (643)
+. ......+.+.+. .++| -.++.-...|...-...+.... -++|.|++-+.++.+.+
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSV 224 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence 31 122333333332 1222 1233333333333333444332 47999999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 006494 626 QRKANSLLQHMSKRE 640 (643)
Q Consensus 626 k~~A~~lL~~l~~~~ 640 (643)
|.-+..+|......+
T Consensus 225 K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 225 KLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999888766543
No 337
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.28 E-value=53 Score=37.70 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=88.3
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcCCCchHHH
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSINQSNKSRA 522 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~~en~~~i 522 (643)
.++|.|...+++.+...++.+...+-.++..-+ ...+..-.+|.|-++. +..+..++.+++.++..+. +...+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 456666666777788888888887777653222 2223334556666553 4557788999999998887 222222
Q ss_pred HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006494 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC 586 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~ 586 (643)
.-..-+.++.+.....++.++...+.+..++.........+....++|.++.+...++-...+.
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHH
Confidence 2223344455555557788888889999888887444344445678999988887766443333
No 338
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.14 E-value=99 Score=28.85 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=74.4
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHH
Q 006494 445 AIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI 523 (643)
Q Consensus 445 ~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv 523 (643)
.++.|+.+|+++ +...|..+..+|+.|-..|.++-+....+. +.-. -.+.+.... . ..+.+... ...-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~-~--~~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDEST-D--ISLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccch-h--hHHhhccC-CCchHHHH
Confidence 466788888876 688999999999998666665444322110 0000 000011111 1 11111111 11333444
Q ss_pred hcCcHHHHHHHhccCCh-hhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 524 KAGIIPSLLKLLEDKAL-GMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 524 ~~G~v~~Lv~lL~~~~~-~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
-..++..|+++|.+..- .-...++.++.++-... ..+-... ..++|.++..+++.++..+|.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45578888888877422 12233444444444321 1122222 25789999999987777777765555443
No 339
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.75 E-value=45 Score=30.44 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=54.8
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc------CChHHHHHHHHHHHHhc
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN------GTPKNKECATSVLLELG 595 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~------~s~~~ke~A~~~L~~L~ 595 (643)
++..|.+-|.++++.++-.|+.+|-.+..+ ......|.+.+++..|++++.. .++.+++..+..+..-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455567777788889999999999999886 5677888888899999999953 45788888888776554
No 340
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=55.49 E-value=36 Score=31.94 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=65.3
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccC--ChHHHHHHcccC-ChhhHHHHHHHHHHhhcC----CC
Q 006494 445 AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLN--GIPPLVNLLRYG-SIRGKKDAATALFNLSIN----QS 517 (643)
Q Consensus 445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~----~e 517 (643)
.+..+..+|++++++.|-.++..+........ .+.+.+.+ -+..|+.+|+.. +..+++.|+.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45567778888888888766655555543222 34443432 568888888765 556777888887777643 33
Q ss_pred chHHHHh---cCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 518 NKSRAIK---AGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 518 n~~~iv~---~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
...++.- .+.++.+++++.+ ....+.++.+|..|-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3333332 3345555555543 4566777777776655
No 341
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.49 E-value=97 Score=35.68 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=88.8
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHccccccccch
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVM 480 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~ 480 (643)
..++|.|.+.++..+..+|+.++..+-.++..-+ ...++.-.+|.|-.+- +..+..++.+++.++..+. +....
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK 462 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence 4577889999999999999999999988764322 3333444566665553 3456788888888888887 22111
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK 538 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~ 538 (643)
..-..-+.++....+..++........+..++.....+....+...++|.++.+...+
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 1112344555555667788888888888888877555545556677888888777654
No 342
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=55.16 E-value=3.1e+02 Score=29.75 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-----CHHHHHHHHHHHHhcc-cChhhHHHHH-hcCCh
Q 006494 374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-----DSKIQEHTVTALLNLS-LDETNKRHIA-REGAI 446 (643)
Q Consensus 374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs-~~~~~k~~i~-~~g~i 446 (643)
+-++..+|+++|.++..++...|....++..+..++..+... ..+++..=++.|.-|+ .....+.++. +.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 457888999999999999999999988877766666655321 1234444555565554 3445666554 88999
Q ss_pred HHHHHHHccC---------CH------HHHHHHHHHHHHcccccc
Q 006494 447 PAIIEILQNG---------TN------EARENSAAALFSLSMLDE 476 (643)
Q Consensus 447 ~~Lv~lL~~~---------~~------~~~~~Aa~~L~~Ls~~~~ 476 (643)
+.+...|.+. ++ +....+..++||+.....
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 9999998531 11 123456678888875443
No 343
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=55.10 E-value=55 Score=27.93 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=52.0
Q ss_pred cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 525 AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 525 ~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
.+.+..|++-+..++....+.++..|..|..++.+...+.+-|++..|.++=...++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566667776666666689999999999999999999999999999977766666666665554444
No 344
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.73 E-value=1.1e+02 Score=35.42 Aligned_cols=154 Identities=17% Similarity=0.117 Sum_probs=89.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHH-cccCChhhHHHHHHHHHHhhc-CCCchHHHHh
Q 006494 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNL-LRYGSIRGKKDAATALFNLSI-NQSNKSRAIK 524 (643)
Q Consensus 447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~ 524 (643)
+.+-+++.+.++-.|...+-++..-- .--+..++|..|++. +.+.+.++++.|..+|.-++. +++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy------~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAY------VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHH------hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence 33444555666666655444433211 111335688888888 456689999999999987665 443
Q ss_pred cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc-cCCHHHH
Q 006494 525 AGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG-LNNSYFI 602 (643)
Q Consensus 525 ~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~-~~~~~~~ 602 (643)
.++..+++|.+ -++.+.-.++-+|..-|.....+.+| ..|-.+..+...-+|+-|+-++..+. .+++..+
T Consensus 589 --~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 589 --QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred --hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence 34556777865 57778777888888877776666544 33333344444556777766665543 3333222
Q ss_pred HHHHHcCcHHHHHHHHhhCCH
Q 006494 603 LAALQYGVYEHLVEITRCGTN 623 (643)
Q Consensus 603 ~~~~~~g~i~~L~~ll~~g~~ 623 (643)
-.+ .|....+.+++.+..+
T Consensus 661 pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 661 PKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred chH--HHHHHHHHHHhhhhhh
Confidence 221 2344444455544433
No 345
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.64 E-value=33 Score=31.16 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcCC-CHH---HHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSYP-DSK---IQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~nLs 431 (643)
....+..|.+.|.++++.++..|+..|-.+.+.. +..+..+.....+..|.+++... ... +++.++..|...+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999875 45566777777888888887643 333 7888888877654
No 346
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=54.42 E-value=3.2e+02 Score=31.41 Aligned_cols=143 Identities=14% Similarity=0.054 Sum_probs=77.3
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc----cCChhhHHHHHHHHHHHhCC--hhh
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE----DKALGMVDEALSILQLLASH--PEG 559 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~----~~~~~~~~~Al~iL~nLa~~--~~~ 559 (643)
.+..++..+. +++..+..++++|.|+-.++-++.-+... ...+...+. ..+..++........|++-. .+.
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~ 666 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN 666 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444 56777888999999999887666666543 222222221 12333333333333344321 111
Q ss_pred HHHHHhcCcHHHHHHHHhcC-----ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHH
Q 006494 560 RNEIGRLSFIETLVEIIKNG-----TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLL 633 (643)
Q Consensus 560 ~~~i~~~g~i~~Lv~lL~~~-----s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL 633 (643)
- +.+..+.+...+... +-++.-.++.+|.+|+..+....+.+...++-...-.+-.. .++..+.-|..+|
T Consensus 667 ~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il 742 (745)
T KOG0301|consen 667 E----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDIL 742 (745)
T ss_pred c----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHH
Confidence 1 134444444444321 12345567778889999887777776666544433344333 3677777777766
Q ss_pred HH
Q 006494 634 QH 635 (643)
Q Consensus 634 ~~ 635 (643)
++
T Consensus 743 ~~ 744 (745)
T KOG0301|consen 743 SL 744 (745)
T ss_pred hc
Confidence 54
No 347
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=53.95 E-value=6.7 Score=41.11 Aligned_cols=44 Identities=16% Similarity=0.361 Sum_probs=35.4
Q ss_pred CcccCccCcccccC--C--eecCCcccccHHhHHHHHhc-CCCCCCCCC
Q 006494 271 HEFLCPVTLEIMTD--P--VIVATGQTYERESIQRWLNS-NHKTCPKTG 314 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d--P--v~~~~g~t~~r~~I~~w~~~-~~~~cP~~~ 314 (643)
-++.|-.|++..-- - --+||.|.|.-.|.+.++.+ +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 45789999988752 2 24799999999999999974 457899998
No 348
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=53.57 E-value=8.9 Score=33.04 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCcccCccCcccccCCeecCC-c-----ccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVAT-G-----QTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~-g-----~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
.+..+|||++++=..-|.+.- + .-||..++.+....| ..=|.+|.|+...-
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sM 94 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSM 94 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhh
Confidence 456799999999999998742 2 469999999999874 45688888887543
No 349
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.23 E-value=20 Score=31.06 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHH
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQE 421 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~ 421 (643)
....++.+..|+ ..|+.-..+++.|+++.|+.+|.+.+.++..
T Consensus 63 Ld~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345677788888 5678888889999999999999999877643
No 350
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.14 E-value=1.3e+02 Score=37.60 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=71.9
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc--hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN--KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRN 561 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en--~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~ 561 (643)
+.+..++..|.+....++..|+.+|.++..-++. ....+..|+. .-+.+....+.+.|+..++.-.. +++...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 4667777888888889999999999999875443 3333444433 33445667889999998874433 233222
Q ss_pred HHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH
Q 006494 562 EIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY 600 (643)
Q Consensus 562 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 600 (643)
.. ...+.+-+.+.+-.+|.++..+|..+|...+.
T Consensus 892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 22 23344444556678899999999999987764
No 351
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.58 E-value=16 Score=41.91 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=32.8
Q ss_pred CCCCCcccCccCcccccCCe----ecC---CcccccHHhHHHHHhc
Q 006494 267 MLVPHEFLCPVTLEIMTDPV----IVA---TGQTYERESIQRWLNS 305 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv----~~~---~g~t~~r~~I~~w~~~ 305 (643)
...++.-+|++|-.-+.+|| +.+ |++.+|..||+.|.+.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 45678889999999999976 344 8999999999999983
No 352
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=51.27 E-value=1.1e+02 Score=31.41 Aligned_cols=71 Identities=24% Similarity=0.235 Sum_probs=49.6
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH--HHHhcCcHHHHHHHh----c--------cCChhhHHHHHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS--RAIKAGIIPSLLKLL----E--------DKALGMVDEALSIL 550 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~--~iv~~G~v~~Lv~lL----~--------~~~~~~~~~Al~iL 550 (643)
=.+|+++.++++.++..|..++.+|..+...-+... .+.+.|..+.+.+.| . +....+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999987443322 355577665554443 2 22334667777777
Q ss_pred HHHhC
Q 006494 551 QLLAS 555 (643)
Q Consensus 551 ~nLa~ 555 (643)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77744
No 353
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.25 E-value=18 Score=33.24 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=22.7
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHh-cCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLN-SNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~-~~~~~cP~~~~~l~~ 319 (643)
...|.||-|+ ++|.-.-.....+ .|.+.||.|+.+|..
T Consensus 97 ~~~Y~Cp~C~------------~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQ------------SKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCC------------CEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 5789999655 4443222222211 244789999998864
No 354
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.06 E-value=16 Score=38.95 Aligned_cols=59 Identities=14% Similarity=0.311 Sum_probs=38.8
Q ss_pred CcccCccCcccccC---CeecCCcccccHHhHHHHHh----cCCC---CCCCCCcccCCCCCCchhhhHHHHH
Q 006494 271 HEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLN----SNHK---TCPKTGQILDHLSLAPNYALRNLIV 333 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~----~~~~---~cP~~~~~l~~~~l~pn~~lr~lI~ 333 (643)
.-|.|-||.+-..- =+.+||+|.||+.|...++. .|.. .||-++ ... ..|-..++.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~---C~~-~a~~g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK---CGS-VAPPGQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC---Ccc-cCCchHHHHHHH
Confidence 45889999876543 44689999999999999996 3322 366543 222 333336666653
No 355
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.77 E-value=1.2e+02 Score=37.07 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHH
Q 006494 372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAII 450 (643)
Q Consensus 372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv 450 (643)
.++++.|..|.-+|..+.--+.+... -..|.|+..+. ++++.++.+++-++..|+..-.|- ++ -.-+.+.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---ie-~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---IE-PWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc---cc-hhhHHHH
Confidence 45788999888888877643332221 24688899887 778999999999998877432221 11 1345566
Q ss_pred HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 451 EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 451 ~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
..|.+.++.+|.+|.-+|.+|-..+ .|--.|.+.-+..+|.+++.+++..|=.....|+
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 6777889999999999999986543 3334688899999999888877766654444444
No 356
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.70 E-value=7.6 Score=38.36 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=33.8
Q ss_pred cCCe-ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494 283 TDPV-IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC 336 (643)
Q Consensus 283 ~dPv-~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 336 (643)
.||- +++|+|.||-.|...-. .+.||.|++++....+.+| |-.-|..+.
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHc
Confidence 5666 46899999999854321 2389999999877666665 444454444
No 357
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.56 E-value=86 Score=34.51 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHccccccccchhhccCChHHHHHHc----ccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh
Q 006494 460 ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL----RYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL 535 (643)
Q Consensus 460 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL----~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL 535 (643)
-+..-.+.+..+..... +-..|.+..++..+ .+.+...+..|+..|.|.++..+.+.+-...-.+..++.-|
T Consensus 233 ~ritd~Af~ael~~~~~----l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL 308 (533)
T KOG2032|consen 233 GRITDIAFFAELKRPKE----LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGL 308 (533)
T ss_pred chHHHHHHHHHHhCccc----ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHH
Confidence 34444555555542222 11345444333333 33456778899999999998744443333333455555555
Q ss_pred cc-CChhhHHHHHHHHHHHhCChhhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHH---HhccCCHH--HHHHHHHc
Q 006494 536 ED-KALGMVDEALSILQLLASHPEGRNEIGR-LSFIETLVEIIKNGTPKNKECATSVLL---ELGLNNSY--FILAALQY 608 (643)
Q Consensus 536 ~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~---~L~~~~~~--~~~~~~~~ 608 (643)
.+ .+.+++-+++.+|..+.....+...--- -++.-.+-.+..+..+..+-+|...+. .+|.++.+ ....+ .
T Consensus 309 ~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v--~ 386 (533)
T KOG2032|consen 309 YDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV--K 386 (533)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH--H
Confidence 44 5677888888888877765333221100 133445566777777888877766544 44544322 11112 1
Q ss_pred CcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 609 GVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 609 g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
+-..+|+..+++.++.+-++....++.+
T Consensus 387 k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 387 KRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred hccccceeeeCCCChHHHHHHHHHHHhc
Confidence 2344556666777777666666666543
No 358
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=50.40 E-value=6.9 Score=44.56 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=40.8
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCCCcccCCCC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKTGQILDHLS 321 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~ 321 (643)
...||||.....+|+.+.|-|-||+.|+-.-|.. +...||+|+.......
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 4569999999999999999999999999887764 3456999986665433
No 359
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.84 E-value=65 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=54.7
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH
Q 006494 528 IPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY 600 (643)
Q Consensus 528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 600 (643)
....+..|.++...++-+++..|..|....+ ...+.-..++..+...|++.++-+--+|+..|..||...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445666777778899999999999999866 11122235667777888888888999999999999987664
No 360
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.27 E-value=4e+02 Score=29.38 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhCh-hhHH-HHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhh
Q 006494 361 EEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENP-DNRI-LIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETN 436 (643)
Q Consensus 361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~-~~r~-~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~ 436 (643)
..+..++..++.. ..+.+..|+..|..+...+. .... ++. ..+..++..|+. .+...+..|+++|..+..+...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 3555566666544 45667778887776654441 1121 111 134457788877 6777888899999887655433
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHH-HHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSA-AALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa-~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
+-.=...-+|..+++.-++...++...|+ .++.-++..+..+ .|..+..++...+...-..++..+..|+..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 22111112333344443444443332232 3333344333322 233444444444333223333344444421
Q ss_pred CCchHHHHh--cCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 516 QSNKSRAIK--AGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 516 ~en~~~iv~--~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
- .+..+.. ..+.|.+++-..+.+..+...|+.+|..+..
T Consensus 437 l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 437 L-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred c-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 1 1222222 5678888888888777888888888876654
No 361
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=49.05 E-value=65 Score=30.19 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=67.3
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhc--CcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHH
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA--GIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~--G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
.+..+.++|++++...+-.++..+.-++...+ ...+.+. --+..|+.+|.. .+..+.+.|+.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44667788888888888888777777765432 3444443 357778888876 4455777888887777664333333
Q ss_pred HHhc-------CcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 563 IGRL-------SFIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 563 i~~~-------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
+.+. +.++.++.++.. +...+.++.+|..+-...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 3222 334444444443 455566666666665543
No 362
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.92 E-value=75 Score=28.62 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=56.5
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhC-C-HHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCG-T-NRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g-~-~~~k~~A~~lL~~l~~ 638 (643)
.++..|-+-|.++++.++..|+.+|-.+..+. ......+...+.+..|..++... + +.+++++..++..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999888874 44566677778889999887654 3 3489999998887654
No 363
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.86 E-value=1.9e+02 Score=32.59 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=52.9
Q ss_pred cCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchH
Q 006494 443 EGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 443 ~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~ 520 (643)
.|++..++++ ..+++.++|..|+-+|...++.+.+ .++..+.+|. +.+..++...+.+|.--|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3455556555 4556677777666666666654432 4555666663 4466666666666666666554433
Q ss_pred HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHh
Q 006494 521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLA 554 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa 554 (643)
. +..|-.++.+.+.-+...|+-++..+.
T Consensus 622 a------~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 622 A------TDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred H------HHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 2 222333344444445555554444433
No 364
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.95 E-value=4.7e+02 Score=29.79 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=65.7
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG 564 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~ 564 (643)
|.+..++.-+.+.+..+++..+..|.-++.+-.-....+..|.+..|.+-+.+..+.+..+|+.+|+.+-....+-+..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 3445555556667778888888888877765555556666777778877777777888888888888776543322211
Q ss_pred hcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcc
Q 006494 565 RLSFIETLVEIIKN-GTPKNKECATSVLLELGL 596 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~ 596 (643)
.+..|+.++++ .|.++|..| |+++..
T Consensus 170 ---~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 170 ---IVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred ---HHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 22345555554 445555443 444443
No 365
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.54 E-value=1.5e+02 Score=34.63 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---hhhHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---ETNKR 438 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~k~ 438 (643)
...++...++++....+..|...+ ...+|-+ ....++.|+.+++.....-...++.+|..|-++ ++-|-
T Consensus 197 d~k~l~siiSsGT~~DkitA~~Ll---vqesPvh-----~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKL 268 (988)
T KOG2038|consen 197 DAKWLYSIISSGTLTDKITAMTLL---VQESPVH-----NLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKL 268 (988)
T ss_pred hHHHHHHHHhcCcchhhhHHHHHh---hcccchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhh
Confidence 455666777777777676665433 2334432 223456678777766444445555565554432 22111
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
.......+..|. +....-+... +|.+ +..-.+.-...|..|..+-...-..++..|+.++++|..+.+-
T Consensus 269 k~f~qrp~~~l~----~~~~~~k~Ll---~Wyf----E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE 337 (988)
T KOG2038|consen 269 KYFSQRPLLELT----NKRLRDKILL---MWYF----EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE 337 (988)
T ss_pred HHHhhChhhhcc----ccccccceeh---HHHH----HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH
Confidence 111111111110 1100001111 1111 1111222234667777766666678999999999998775554
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhc
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELG 595 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~ 595 (643)
.... .+..||.-|.++...+...|...|.+|.. ||..+..+ +..+..++.. .+.+.+.+|+..|..+.
T Consensus 338 qE~~----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 338 QENN----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHH----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 3332 45567888877766777777776666654 56655433 3334444432 34566666666665543
No 366
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.91 E-value=93 Score=35.02 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=64.6
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC--CHHHHH
Q 006494 526 GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN--NSYFIL 603 (643)
Q Consensus 526 G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~--~~~~~~ 603 (643)
|.+..+++-+.+++..+...++.+|+.++..-.-....+..|.+..|.+-+-...+.+|..|+.+|..+-.- +++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 556666666666777888888888888887744444445557777787777777788888888888766432 2221
Q ss_pred HHHHcCcHHHHHHHHhhC-CHHHHHHHH
Q 006494 604 AALQYGVYEHLVEITRCG-TNRGQRKAN 630 (643)
Q Consensus 604 ~~~~~g~i~~L~~ll~~g-~~~~k~~A~ 630 (643)
.+...|+.++++. ++.+|+.|.
T Consensus 169 -----~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 -----RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred -----HHHHHHHHHHhcCcHHHHHHHHH
Confidence 2334556666554 556666654
No 367
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=46.10 E-value=7.6 Score=37.98 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=37.3
Q ss_pred CcccCccCc-ccccCCee----cC-CcccccHHhHHHHHhcCCCCCC--CCCcccCC
Q 006494 271 HEFLCPVTL-EIMTDPVI----VA-TGQTYERESIQRWLNSNHKTCP--KTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~-~~m~dPv~----~~-~g~t~~r~~I~~w~~~~~~~cP--~~~~~l~~ 319 (643)
.+-+||+|. +.+-+|-+ -| |=|..|-+|..+-|..|...|| -|+..|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 456899995 44445543 24 8999999999999999999999 57766653
No 368
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.60 E-value=67 Score=29.15 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhC-CHH---HHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCG-TNR---GQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g-~~~---~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+ .....+.....+..|..++.+. +.. +++++..+|.....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457778888888999999999999999988775 4445555567888999987654 443 89999999887654
No 369
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=45.37 E-value=16 Score=27.31 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=23.9
Q ss_pred cccCccCcccc--cCCeec--CCcccccHHhHH
Q 006494 272 EFLCPVTLEIM--TDPVIV--ATGQTYERESIQ 300 (643)
Q Consensus 272 ~f~Cpi~~~~m--~dPv~~--~~g~t~~r~~I~ 300 (643)
.-.||+|++.+ .|.+++ .||-.|.|.|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45799999999 777775 489999999943
No 370
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=45.36 E-value=15 Score=38.08 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=42.5
Q ss_pred CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHH
Q 006494 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQ 334 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 334 (643)
..+=+.||+|.+.|.-|..= ..||.-|-.|=.+ -...||.|+.++.+ +-++.+...++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHh
Confidence 45668999999999999764 4599999998542 25689999988873 244555444443
No 371
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=44.69 E-value=25 Score=24.97 Aligned_cols=39 Identities=15% Similarity=0.413 Sum_probs=20.8
Q ss_pred CccCcccccCCeec---CCcccccHHhHHHHHhcCCC-CCCCC
Q 006494 275 CPVTLEIMTDPVIV---ATGQTYERESIQRWLNSNHK-TCPKT 313 (643)
Q Consensus 275 Cpi~~~~m~dPv~~---~~g~t~~r~~I~~w~~~~~~-~cP~~ 313 (643)
|-+|.++..-=+.= .|+-.+-..|++++|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 44555555555543 37788999999999986443 59976
No 372
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=44.57 E-value=1.5e+02 Score=31.41 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-------CHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-------DSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs 431 (643)
-+.....+.+.+.+.+...+..|+..|+. ++.. ...+|.++.++... +.......+..+..|.
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~t----D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLRT----DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcc----CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 34455666666666677777777776653 2211 12467777766542 4555566666666676
Q ss_pred cChhhHHHHHhcCChHHHHHHHcc----------CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--Ch
Q 006494 432 LDETNKRHIAREGAIPAIIEILQN----------GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SI 499 (643)
Q Consensus 432 ~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~ 499 (643)
.++...-...-.-.++.++..+-. ..+..|..||.+|..++..-.....-.....+..|.+.+.+. ..
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 666554433333367777766621 236899999999999974322222122333444555555433 22
Q ss_pred hhHHHHHHHHHHhh
Q 006494 500 RGKKDAATALFNLS 513 (643)
Q Consensus 500 ~~k~~A~~aL~nLs 513 (643)
....-|+..|..|.
T Consensus 326 ~~~YGAi~GL~~lG 339 (343)
T cd08050 326 TTHYGAIVGLSALG 339 (343)
T ss_pred chhhHHHHHHHHhC
Confidence 33555555555553
No 373
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.73 E-value=1.9e+02 Score=32.57 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=64.0
Q ss_pred ccCChHHHHHH-cccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhH
Q 006494 483 NLNGIPPLVNL-LRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 483 ~~g~i~~Lv~l-L~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
..|++..|++. +.+++.++++.|+-||.-+|.... ..++..+++|.+ .+..+.-..+-+|..-|.....+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 45788888888 567789999999999988876443 356667778865 45555555555565555543322
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
-++..|-.++....+-+|+.|.-++..+.
T Consensus 621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 621 ------VATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 13444455566666667777766665544
No 374
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=43.57 E-value=3.7e+02 Score=27.35 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcccCh--------hhHHHHHhcCChHHHHHHHccCC----HHHHHHHHHHHHHccccccccchhhcc
Q 006494 417 SKIQEHTVTALLNLSLDE--------TNKRHIAREGAIPAIIEILQNGT----NEARENSAAALFSLSMLDENRVMVGNL 484 (643)
Q Consensus 417 ~~~~~~a~~~L~nLs~~~--------~~k~~i~~~g~i~~Lv~lL~~~~----~~~~~~Aa~~L~~Ls~~~~~k~~i~~~ 484 (643)
+.+.+.++..|..|...+ +++-.+.--+.+|.++.-+.+++ ......+|..|..++.... .
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~ 148 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------L 148 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------C
Confidence 445566777777665322 23333333445677777776666 1344466777777762211 1
Q ss_pred CChHHHHHHcccCC----hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494 485 NGIPPLVNLLRYGS----IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 485 g~i~~Lv~lL~s~~----~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
+.+..++.....+. .+....++..|.+-. .++. +...+..|+++|.++.+-++...+.+|..+-.+.+.+
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 23344444333332 223333444443321 1222 2345667899998888889999999999999986666
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
.. ...+.+.++++++++.- ...|+.+|-.+-.
T Consensus 223 ~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred CC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 55 34568999999996532 3567777766543
No 375
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.89 E-value=29 Score=32.16 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=33.8
Q ss_pred CcccCccCcccccCCeecCCcc-----cccHHhHHHHHhc-CCCCCCCCCcccCC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQ-----TYERESIQRWLNS-NHKTCPKTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~~ 319 (643)
.+..|=||.+-.. +..-||.. ...++|+++|++. +...||.|+.+...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4456888877643 34456532 4589999999985 45679999988753
No 376
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=41.56 E-value=1.8e+02 Score=31.23 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=94.2
Q ss_pred cCCCHHHHHHHHHHHHhcccCh---hhHHHHHhcCChHHHHHHHc--------cC---CHHHHHHHHHHHHHcccccccc
Q 006494 413 SYPDSKIQEHTVTALLNLSLDE---TNKRHIAREGAIPAIIEILQ--------NG---TNEARENSAAALFSLSMLDENR 478 (643)
Q Consensus 413 ~~~~~~~~~~a~~~L~nLs~~~---~~k~~i~~~g~i~~Lv~lL~--------~~---~~~~~~~Aa~~L~~Ls~~~~~k 478 (643)
...+.+.+..|...|.+.-... .....+.+ -++.++.+++ .+ +.+...+|..+|..+-...+.-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3445566667766666643211 12222222 2455555442 12 4456677888888776665554
Q ss_pred chhhccC---ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHH
Q 006494 479 VMVGNLN---GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSIL 550 (643)
Q Consensus 479 ~~i~~~g---~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL 550 (643)
..+...- .+...+..+.+++. .|.-+...|.-|+ ......+++....+..++..+.. ++..+..+.+.++
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls-~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLS-DQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-cCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 4444422 33445555544321 1222222333333 23333445555556666665543 3556788899999
Q ss_pred HHHhCChhhHHHHHh-c-CcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 551 QLLASHPEGRNEIGR-L-SFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 551 ~nLa~~~~~~~~i~~-~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
.+|....... +.+ . -.++.++.-+-+.....+..|..++..+.
T Consensus 159 ~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 159 KRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9998863222 222 2 36777777776666677777766665554
No 377
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=41.44 E-value=44 Score=31.87 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=30.6
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC-chhhhHHHHHHHHh
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA-PNYALRNLIVQWCE 337 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~-pn~~lr~lI~~w~~ 337 (643)
+..|.||-|+.-+ ||+- -++ ..+.||.|+.+|...+-. -...++..|...-.
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 5789999776322 2221 122 368999999998753322 12455665655543
No 378
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.06 E-value=13 Score=27.37 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=11.3
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|++|.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999964
No 379
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.97 E-value=15 Score=38.63 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCcccCccCcccccCCe---e-cCCcccccHHhHHHHH-hcCCCC-----CCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494 270 PHEFLCPVTLEIMTDPV---I-VATGQTYERESIQRWL-NSNHKT-----CPKTGQILDHLSLAPNYALRNLIVQWC 336 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv---~-~~~g~t~~r~~I~~w~-~~~~~~-----cP~~~~~l~~~~l~pn~~lr~lI~~w~ 336 (643)
..+|.||+...+|++-- - -.+|+.||..+|++.= ...++. -|++|+.+- +-..||..-+.-+.+|.
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiI-tiQdP~~lek~~~~~F~ 174 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADII-TIQDPNNLEKFNMSDFY 174 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhcee-eecCcchhhccchhhHH
Confidence 57899999999998743 2 3589999999999852 222333 466655442 22346655555455553
No 380
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=39.84 E-value=21 Score=25.88 Aligned_cols=29 Identities=24% Similarity=0.651 Sum_probs=18.7
Q ss_pred CeecCCc-----ccccHHhHHHHHh-cCCCCCCCC
Q 006494 285 PVIVATG-----QTYERESIQRWLN-SNHKTCPKT 313 (643)
Q Consensus 285 Pv~~~~g-----~t~~r~~I~~w~~-~~~~~cP~~ 313 (643)
|.+.||+ ....+.|+++|+. .+..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6777763 3578899999998 445678875
No 381
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.78 E-value=5.3e+02 Score=29.37 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhH------HHHHHHHHHHHH
Q 006494 55 LNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESE------AVMSRFHAVYDK 128 (643)
Q Consensus 55 ~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~------~i~~~~~~~~~~ 128 (643)
.+..+++..+.--++||...+. .+.-...|+.-+..|..+..+.+.+... |.++.++ .+...+..+.+.
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~~~~~ 259 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGEAQLA 259 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHHHHHH
Confidence 3467788888889999987542 3444566666666676666666666543 2222332 355555555555
Q ss_pred HHHH
Q 006494 129 LYEA 132 (643)
Q Consensus 129 l~~~ 132 (643)
+...
T Consensus 260 l~~~ 263 (563)
T TIGR00634 260 LASV 263 (563)
T ss_pred HHHh
Confidence 5444
No 382
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=39.71 E-value=45 Score=25.22 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCCCCCcccCCCCCCch--hhhHHHHHHHHhhccccCCCCCC
Q 006494 308 KTCPKTGQILDHLSLAPN--YALRNLIVQWCEKNNVELPKKDT 348 (643)
Q Consensus 308 ~~cP~~~~~l~~~~l~pn--~~lr~lI~~w~~~~~~~~p~~~~ 348 (643)
..||+|+..+.+..+.|+ ..-+..|.+|...++ .+|....
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~-~cP~~~~ 43 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG-TDPVTGQ 43 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC-CCCCCcC
Confidence 469999999988776664 567888999987743 4565543
No 383
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.56 E-value=18 Score=38.95 Aligned_cols=41 Identities=12% Similarity=0.373 Sum_probs=29.0
Q ss_pred cccCccCc-ccccCCe---ecCCcccccHHhHHHHHhc-----CCCCCCC
Q 006494 272 EFLCPVTL-EIMTDPV---IVATGQTYERESIQRWLNS-----NHKTCPK 312 (643)
Q Consensus 272 ~f~Cpi~~-~~m~dPv---~~~~g~t~~r~~I~~w~~~-----~~~~cP~ 312 (643)
...|+||. +.+...- +..|||.||..|..+++.. +...||-
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 45799998 4443312 4679999999999999982 2345766
No 384
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=39.41 E-value=87 Score=30.00 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhccC
Q 006494 568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREH 641 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~e 641 (643)
.++.++++..+.+...+..|+.++..+...+--+= .-++|.|+.+..+.++..+..|..+++.+.+.++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 35666777777888888899988877766431100 1268999999999999999999999999876553
No 385
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=39.05 E-value=3.8e+02 Score=28.84 Aligned_cols=130 Identities=17% Similarity=0.089 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHhc-c--CChhhHHHHHHHHHHHhCChhh----HHH-------
Q 006494 498 SIRGKKDAATALFNLSINQSNK-SRAIKAGIIPSLLKLLE-D--KALGMVDEALSILQLLASHPEG----RNE------- 562 (643)
Q Consensus 498 ~~~~k~~A~~aL~nLs~~~en~-~~iv~~G~v~~Lv~lL~-~--~~~~~~~~Al~iL~nLa~~~~~----~~~------- 562 (643)
....+..|+..|..|+...+.. ..++ .+.+..++.-.. + .+...++.|+..+..|+..... ...
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 3455677888999998632221 1111 223333332221 2 3446788899999999986422 111
Q ss_pred --HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHH
Q 006494 563 --IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLL 633 (643)
Q Consensus 563 --i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL 633 (643)
+....++|-|. -=.+..|-.|-.|+..+...-..-+... + .+++|.|+..+.+++.-+.-.|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~--l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ--L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH--H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH--H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11222223222 0013457778888888777766543321 1 35899999999999988887777653
No 386
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.71 E-value=1e+02 Score=35.34 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=74.4
Q ss_pred hHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh------cCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh---
Q 006494 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK------AGIIPSLLKLLEDKALGMVDEALSILQLLASHP--- 557 (643)
Q Consensus 487 i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~------~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~--- 557 (643)
...++.+|.+.+-..+-.-+.++.|+..+-.....+++ ...+..|++-|.+.++-+...|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 46788889998887777778888898865444445554 223444444455578889999999998888753
Q ss_pred -hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 558 -EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 558 -~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
..|. .++...++-+.+.+..+|.+|+..+..|-..
T Consensus 381 ~~~r~-----ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRH-----EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 2333 3455566677778888999999988877643
No 387
>PHA02862 5L protein; Provisional
Probab=38.10 E-value=26 Score=31.76 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=31.2
Q ss_pred cCccCcccccCCeecCCc-----ccccHHhHHHHHhc-CCCCCCCCCcccCC
Q 006494 274 LCPVTLEIMTDPVIVATG-----QTYERESIQRWLNS-NHKTCPKTGQILDH 319 (643)
Q Consensus 274 ~Cpi~~~~m~dPv~~~~g-----~t~~r~~I~~w~~~-~~~~cP~~~~~l~~ 319 (643)
.|=||.+--.+. .-||+ .-..+.|+++|++. ++..||.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 366676654443 34543 35789999999984 45679999988753
No 388
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=37.79 E-value=27 Score=32.62 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=22.7
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 320 (643)
-+..|.||-|..-+ ||+ .-++ ..++||.|+.+|...
T Consensus 106 ~~~~Y~Cp~c~~r~----------tf~-----eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 106 NNMFFICPNMCVRF----------TFN-----EAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCCeEECCCCCcEe----------eHH-----HHHH-cCCcCCCCCCEeeec
Confidence 36789999765222 121 1222 368999999998753
No 389
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.75 E-value=35 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhh
Q 006494 504 DAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGM 542 (643)
Q Consensus 504 ~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~ 542 (643)
.++..+..|+..|+-=..+++.|+++.|+.+|.+.|.++
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 567778889999988899999999999999998877654
No 390
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.40 E-value=6.8e+02 Score=28.64 Aligned_cols=206 Identities=20% Similarity=0.203 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh----hC---ChHHHHHHhcCCCHHHHHHHHHHHHhcccCh
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN----NG---GIRPLVQLLSYPDSKIQEHTVTALLNLSLDE 434 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~----~g---~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~ 434 (643)
.+..|++.|..-+.+........+..-. .....|..+.+ .| ++..+..++....... ..|...|..|....
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhc
Confidence 3555666665555444333333332211 11234444433 33 4556666666643222 23444444443221
Q ss_pred -hhHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHccc---cc-------cccchhhccCChHHHHHHcc----
Q 006494 435 -TNKRHIAREGAIPAIIEILQN----GTNEARENSAAALFSLSM---LD-------ENRVMVGNLNGIPPLVNLLR---- 495 (643)
Q Consensus 435 -~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~---~~-------~~k~~i~~~g~i~~Lv~lL~---- 495 (643)
.- ....+..+..+++. .+..++..|.-++..|.. .. ..+........++.|...+.
T Consensus 426 ~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 426 RRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp ---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHH
T ss_pred CCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 11 11234445555553 345566656656665541 11 11122222346677777665
Q ss_pred cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHH
Q 006494 496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~L 572 (643)
.++..-+..++.||.|+-. ...++.|..++.+. +..+...|+.+|..++.... ..+.+.+
T Consensus 501 ~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-------~~v~~~l 563 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-------EKVREIL 563 (618)
T ss_dssp TT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-------HHHHHHH
T ss_pred ccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-------HHHHHHH
Confidence 3456777888999999842 24677788777654 44566777777776644311 1245667
Q ss_pred HHHHhcC--ChHHHHHHHHHH
Q 006494 573 VEIIKNG--TPKNKECATSVL 591 (643)
Q Consensus 573 v~lL~~~--s~~~ke~A~~~L 591 (643)
..++.+. +.+.|-.|+.+|
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHhcCCCCChhHHHHHHHHH
Confidence 7777763 355666655444
No 391
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.96 E-value=16 Score=24.21 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=8.2
Q ss_pred CCCCCCCCCcc
Q 006494 306 NHKTCPKTGQI 316 (643)
Q Consensus 306 ~~~~cP~~~~~ 316 (643)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35789999864
No 392
>PLN02189 cellulose synthase
Probab=36.72 E-value=25 Score=42.28 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=35.6
Q ss_pred cCccCcccc-----cCCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 274 LCPVTLEIM-----TDPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 274 ~Cpi~~~~m-----~dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
.|.||++-. -+|-+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 799998753 345443 367789999998778889999999998876
No 393
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=36.63 E-value=22 Score=34.35 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=36.9
Q ss_pred ccCccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 273 FLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
..|.+|..+.-.-+- -.||-.|.+.|++.++.+ .+.||.|+--.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 479999999876654 367888999999999998 789999975444
No 394
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.76 E-value=4e+02 Score=25.52 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=51.1
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHH--hcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI--KAGIIPSLLKLLEDKALGMVDEALSILQLLASHP 557 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv--~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~ 557 (643)
.++.+++=|++.....+.-|...+..|... ....+++ =...+.+|-..|.+.++++...++.+|..|+...
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 445555556666666777787777777765 3333343 3567888888888889999999999999996653
No 395
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.49 E-value=19 Score=36.27 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=31.5
Q ss_pred CcccCccCcccccCCeecCC----cccccHHhHHHHHh----cCCCCCCC
Q 006494 271 HEFLCPVTLEIMTDPVIVAT----GQTYERESIQRWLN----SNHKTCPK 312 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~----g~t~~r~~I~~w~~----~~~~~cP~ 312 (643)
..++|-+|.+-+.|..++.| +|-||--|-.+.++ .|...||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 45999999999999998866 68898666555554 44455775
No 396
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=35.24 E-value=2.5e+02 Score=31.28 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=68.7
Q ss_pred cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH----HHHHhcCcHHHHHHHHh-cCChHHHHHHHHHHHHhccCC-
Q 006494 525 AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR----NEIGRLSFIETLVEIIK-NGTPKNKECATSVLLELGLNN- 598 (643)
Q Consensus 525 ~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~----~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~- 598 (643)
.+.|..+++.+. .+.+.+--+.++. +..++.. +.+.+.+.|+.|+.+|. +.++..+.+|+.+|..+..-.
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 455566666553 3445555445444 2223333 33445799999999996 466788899998877764321
Q ss_pred ------------HHHHHHHHHcCcHHHHHHHHh--hCCHHHHHHHHHHHHHhhhc
Q 006494 599 ------------SYFILAALQYGVYEHLVEITR--CGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 599 ------------~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~lL~~l~~~ 639 (643)
..-...+.....+..|+..+. .++.-......-++..+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 123344555678888998876 45555555566677777654
No 397
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.48 E-value=24 Score=27.42 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=9.5
Q ss_pred cccHHhHHHHHhc
Q 006494 293 TYERESIQRWLNS 305 (643)
Q Consensus 293 t~~r~~I~~w~~~ 305 (643)
-|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 398
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=34.02 E-value=17 Score=26.41 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=8.3
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999863
No 399
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=34.00 E-value=5.7e+02 Score=26.75 Aligned_cols=198 Identities=11% Similarity=0.067 Sum_probs=127.1
Q ss_pred HHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhH----HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcc
Q 006494 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNK----RHIA-REGAIPAIIEILQNGTNEARENSAAALFSLS 472 (643)
Q Consensus 399 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k----~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 472 (643)
+-++|....|+..|...+.+.+..+..+..|+-.-+ ..+ ..+. ....+..++.--.. .++...++...+..-.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH
Confidence 456789999999999888999998888877764221 111 1111 22222222222011 2444444444444444
Q ss_pred ccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHHHhcCc----HHHHHHHhccCChhhHHHHH
Q 006494 473 MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIKAGI----IPSLLKLLEDKALGMVDEAL 547 (643)
Q Consensus 473 ~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~~G~----v~~Lv~lL~~~~~~~~~~Al 547 (643)
..+.....|..+..+......++.++=++.-+|..+...|...+. ....+..... .+.--.++.+++=-....++
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 444455666667777777777777766777788888887766443 3445544332 33345556666666788899
Q ss_pred HHHHHHhCChhhHHHHH----hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 548 SILQLLASHPEGRNEIG----RLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 548 ~iL~nLa~~~~~~~~i~----~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
..|..+-....+...+. +...+..++.+|+..+...|-.|..+-+-...+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99998887765554443 346788999999999999999999998877765
No 400
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=8.6e+02 Score=28.67 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=78.7
Q ss_pred hCChHHHHHHhcC--------CCHHHHHHHHHHHHhccc--C-hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHH
Q 006494 402 NGGIRPLVQLLSY--------PDSKIQEHTVTALLNLSL--D-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFS 470 (643)
Q Consensus 402 ~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~--~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~ 470 (643)
.|.++.++..|.. +++.-.+.|++.+.++.. . +.--..+.+.=.++.++..+++...-.+..|+-++..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 5888999999943 133444566676666542 2 1222233344455666666777777777888888888
Q ss_pred ccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494 471 LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524 (643)
Q Consensus 471 Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~ 524 (643)
++.+ .+..-.-..+.....+++++.+..+...|+.||.-+-.+.+...++.+
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 8433 332223345667777888888888999999999988887766655544
No 401
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=33.46 E-value=20 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 289 ATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 289 ~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.+.|-.|..|+...+.. ...||+|..+|+.
T Consensus 18 C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 45678899999998876 5789999999875
No 402
>PF14353 CpXC: CpXC protein
Probab=33.05 E-value=35 Score=30.47 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=33.2
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcC--CCCCCCCCcccC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN--HKTCPKTGQILD 318 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~ 318 (643)
+.+||-|+..+.-.+-..-.-..+....++-++.. ..+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 35799999998877765544566777777777532 246999997754
No 403
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.71 E-value=1.9e+02 Score=29.71 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=45.4
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHccccccccc--hhhccCChH----HHHHHcc--------cCChhhHHHHHHHHH
Q 006494 445 AIPAIIEILQNGTNEARENSAAALFSLSMLDENRV--MVGNLNGIP----PLVNLLR--------YGSIRGKKDAATALF 510 (643)
Q Consensus 445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~--~i~~~g~i~----~Lv~lL~--------s~~~~~k~~A~~aL~ 510 (643)
.+|+++.++.+.+++.|..++.+|..+...-.... .+.+.|..+ .|..++- ..+......|.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999998864222211 244555443 3333333 334556667777777
Q ss_pred Hhhc
Q 006494 511 NLSI 514 (643)
Q Consensus 511 nLs~ 514 (643)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 404
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.67 E-value=3.9e+02 Score=35.04 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHhcccChhhHHHH----HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChH
Q 006494 414 YPDSKIQEHTVTALLNLSLDETNKRHI----AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIP 488 (643)
Q Consensus 414 ~~~~~~~~~a~~~L~nLs~~~~~k~~i----~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~ 488 (643)
+.+..+...|+..|..|+..--.+..+ ....++.++..++++ .+.++++....++.++.........=|..-.+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 345667777888777776421112211 123578888888874 478999999999988753322111112222333
Q ss_pred HHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHH--hcCcHHHHHHHhcc----C-ChhhHHHHHHHHHHHhCC-hhh-
Q 006494 489 PLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI--KAGIIPSLLKLLED----K-ALGMVDEALSILQLLASH-PEG- 559 (643)
Q Consensus 489 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv--~~G~v~~Lv~lL~~----~-~~~~~~~Al~iL~nLa~~-~~~- 559 (643)
.|-....+.+......|..++..+.... -..+. ..+.+.-++..|.. . +..+--.|+..|++++.. .++
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 3333334456677777777776655321 11111 12444444444432 2 345566677777765221 000
Q ss_pred -----------------------HHH---HH-----hcCcHHHHHHH---HhcCChHHHHHHHHHHHHhccC-CHHHHHH
Q 006494 560 -----------------------RNE---IG-----RLSFIETLVEI---IKNGTPKNKECATSVLLELGLN-NSYFILA 604 (643)
Q Consensus 560 -----------------------~~~---i~-----~~g~i~~Lv~l---L~~~s~~~ke~A~~~L~~L~~~-~~~~~~~ 604 (643)
... +. ....+|.|..+ .....+++|..|+.+|..+-.. +...-..
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000 00 01244555444 3446678899999998876543 2222222
Q ss_pred HHH---cCcHHHHHHHHh
Q 006494 605 ALQ---YGVYEHLVEITR 619 (643)
Q Consensus 605 ~~~---~g~i~~L~~ll~ 619 (643)
.++ .+++-+++..+.
T Consensus 1386 ~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 222 256666665543
No 405
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=32.58 E-value=3.7e+02 Score=31.12 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=106.3
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS- 517 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e- 517 (643)
.+.....++.|+..+.-|+ +-......++.+...-+... .+.+.+|.|++++...+..++.. .|.++-.+.+
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~ 360 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhh
Confidence 3344445666666666555 22223333343332211111 55678899999999888665543 3444433333
Q ss_pred chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
--..+++.-++|.+..-+.+.++.+++..+..+..|+..=.-+ ......+..+..+-.+.....|.+..-+|..++.+
T Consensus 361 Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccc
Confidence 2456677889999999999999999999999999888752222 12222333333333334455667776666666665
Q ss_pred CHHHHHHHHHcCc-HHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 598 NSYFILAALQYGV-YEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 598 ~~~~~~~~~~~g~-i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
..... +.++ +....+-+.+.-..+|.++...++...++
T Consensus 439 l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 439 LAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred cchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 32211 2222 23333344455556666666666555443
No 406
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.51 E-value=1e+02 Score=37.13 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=67.7
Q ss_pred chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHh---cCChHHHHHHHHHHHH
Q 006494 518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIK---NGTPKNKECATSVLLE 593 (643)
Q Consensus 518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~---~~s~~~ke~A~~~L~~ 593 (643)
.+.++..+|++..|++.+-...+.++-+-+..+..++.. +.+.+...+.|++..|++++. +|+..--.+|..+...
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 377888999999999999888889999999999999986 778888888899999988873 4666667788888888
Q ss_pred hccC
Q 006494 594 LGLN 597 (643)
Q Consensus 594 L~~~ 597 (643)
||..
T Consensus 980 Lgay 983 (2799)
T KOG1788|consen 980 LGAY 983 (2799)
T ss_pred Hhhc
Confidence 8865
No 407
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.06 E-value=1.1e+02 Score=29.03 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc-hhhhHHHHHHHHh
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP-NYALRNLIVQWCE 337 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~w~~ 337 (643)
+..|.||.|..-+ +|+.. +.. .++||.|+..|...+-.+ ...+.+.|...-.
T Consensus 111 ~~~y~C~~~~~r~----------sfdeA-----~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 111 NNYYVCPNCHVKY----------SFDEA-----MEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred CCceeCCCCCCcc----------cHHHH-----HHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 5678999765432 33333 344 389999999998655444 4455555555443
No 408
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.00 E-value=22 Score=36.22 Aligned_cols=26 Identities=12% Similarity=0.425 Sum_probs=18.1
Q ss_pred cccCccCccccc--CCee-cCCcccccHH
Q 006494 272 EFLCPVTLEIMT--DPVI-VATGQTYERE 297 (643)
Q Consensus 272 ~f~Cpi~~~~m~--dPv~-~~~g~t~~r~ 297 (643)
.|.||+|+.-|. +.-. =+.||+||..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999886 3222 2458888766
No 409
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=30.79 E-value=7.3e+02 Score=27.01 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=89.6
Q ss_pred HHHHHHcccCC-hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh--cc--------CChhhHHHHHHHHHHHhCC
Q 006494 488 PPLVNLLRYGS-IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL--ED--------KALGMVDEALSILQLLASH 556 (643)
Q Consensus 488 ~~Lv~lL~s~~-~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL--~~--------~~~~~~~~Al~iL~nLa~~ 556 (643)
..++.+|..+- ...+...+.++.-|+.....-.-+....-++.|+.+- .. .+-.+..+++.+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45666666664 3444556667777776554433332222333333332 11 1236788999999999998
Q ss_pred -hhhHHHHHhcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhh---------
Q 006494 557 -PEGRNEIGRLSFIETLVEIIKNGT-----PKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRC--------- 620 (643)
Q Consensus 557 -~~~~~~i~~~g~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~--------- 620 (643)
+..+....+......+.+.+...- ...+-.=+..|.-|..... .+.+.+.+.++++.+...+.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 567777777777777777664321 2233334445555554443 345566677888888887763
Q ss_pred CC---HHHHHHHHHHHHHhhh
Q 006494 621 GT---NRGQRKANSLLQHMSK 638 (643)
Q Consensus 621 g~---~~~k~~A~~lL~~l~~ 638 (643)
++ +.--..|.++|+.+..
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFN 228 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 22 2556778888877653
No 410
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=30.34 E-value=31 Score=32.38 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=18.7
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcc
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQI 316 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~ 316 (643)
-+.||+|+-+..+ .. ...||+|+.|
T Consensus 134 ~~vC~vCGy~~~g--e~------------------P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG--EA------------------PEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC--CC------------------CCcCCCCCCh
Confidence 6899999766666 22 4789999865
No 411
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.58 E-value=3.7e+02 Score=24.45 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHH-HHHHhcC---CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRP-LVQLLSY---PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~nLs 431 (643)
.+..+..|.+.|.+ .++.++..|+..|-.+.+... ..+..++..+++.. |++++.. .+..++...+..+...+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 46789999999984 588899999999988887543 44666777788886 9999863 23578888888887765
No 412
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.41 E-value=79 Score=29.17 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=21.2
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
.|.+|+++|.+++......|+.+|.+-..
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 47999999999889999999999987543
No 413
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.37 E-value=2.4e+02 Score=24.33 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=49.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHH---hhC---CHHHHHHHHHHHHHh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEIT---RCG---TNRGQRKANSLLQHM 636 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll---~~g---~~~~k~~A~~lL~~l 636 (643)
.++..|.+-|.+.++..+-.|+.+|-.+..+.++ ....+.....+..++.+. ..| +..+|+++..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3566677777788999999999999999987654 444455555555554431 122 578899999988764
No 414
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.35 E-value=5.6e+02 Score=32.58 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=81.9
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh-cCCCchHH
Q 006494 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSR 521 (643)
Q Consensus 443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs-~~~en~~~ 521 (643)
.+++..|+.+|..+...+|..|..+|..+...+.. .+....+-..+-.-+.+.+..++..|+..+.... ++++...+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 35677888888888888999999999998755432 1112222233344455567788888888887433 34444333
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC---ChHHHHHHHHHHHHhc
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG---TPKNKECATSVLLELG 595 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~---s~~~ke~A~~~L~~L~ 595 (643)
.. ..+.+=+.+..-.+...++.++.-+|.....-..+ +..++++|+.. ...++..+..++..+-
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 32 22333344555678899999999988863322222 22333444331 1224555555555554
No 415
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.24 E-value=1.2e+02 Score=26.54 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=33.2
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~ 565 (643)
+++.|+.-|.+.++.++..|+.+|...|..+...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578889999998999999999999999998866666654
No 416
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.21 E-value=1.8e+02 Score=28.27 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHhcCcHHHHHHHhcc---CC---------------hhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCCh
Q 006494 521 RAIKAGIIPSLLKLLED---KA---------------LGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTP 581 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~---~~---------------~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~ 581 (643)
.+...|+...++++|.. .. ..+...+..+|...+.. ..++..+... ++.+...+....-
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 33457888888888865 11 24667888999999987 5677666553 3333333332111
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh
Q 006494 582 KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 582 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 620 (643)
..--.+..+|..+-..+.+-+..+.+. .+..++.++..
T Consensus 116 ~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 116 GYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp -TTHHHHHHHHHHHTT-----------------------
T ss_pred cCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 111356677777888777766665544 37777777665
No 417
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.15 E-value=1.7e+02 Score=30.90 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHccccccccchhhccC--ChHHHHHHcccC---ChhhHHHHHHHHHHhhcCCCchHHHHh-------cCc
Q 006494 460 ARENSAAALFSLSMLDENRVMVGNLN--GIPPLVNLLRYG---SIRGKKDAATALFNLSINQSNKSRAIK-------AGI 527 (643)
Q Consensus 460 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~s~---~~~~k~~A~~aL~nLs~~~en~~~iv~-------~G~ 527 (643)
+|..|.+++..+.........+...+ .+..|+++++.+ ...++..|+.+|..++........++. .|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45556677766666666666666654 889999999765 457888999999999986655444432 566
Q ss_pred HHHHHHH
Q 006494 528 IPSLLKL 534 (643)
Q Consensus 528 v~~Lv~l 534 (643)
++.+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666554
No 418
>PLN02195 cellulose synthase A
Probab=29.14 E-value=37 Score=40.58 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=35.9
Q ss_pred cCccCcc-----cccCCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 274 LCPVTLE-----IMTDPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 274 ~Cpi~~~-----~m~dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
.|-||++ .+-+|-+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888877 44566654 478889999997777889999999998776
No 419
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.08 E-value=3.4e+02 Score=23.38 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhc------CCCHHHHHHHHHHHHhc
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLS------YPDSKIQEHTVTALLNL 430 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~nL 430 (643)
...+..|...|.+.++.++..|+..|-.+.+... .....+........++++.. ..+..++..+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4688889999999999999999999999987653 44555666555555554311 12567777777666543
No 420
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=29.02 E-value=3.9e+02 Score=23.31 Aligned_cols=104 Identities=9% Similarity=0.146 Sum_probs=60.6
Q ss_pred CchhHHHHHHHHHHHHHhccCCCcchhhhhHHHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006494 24 NECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDC 103 (643)
Q Consensus 24 ~~~~~l~~~l~~l~~~i~~~~~~~~~~~k~~~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c 103 (643)
.+...+|+..-.|-+.|+...... .--..-..+++.++.|.-.=-..-|+ ..+|-+.-.|.||-.-|+---..|+.|
T Consensus 5 ~sk~~Ile~~~~L~~~l~~l~~~~-~~~~~~~qL~D~~~~l~~~C~~yaD~--~~~p~~KF~FREllsrLE~~~rqLr~~ 81 (110)
T PF08919_consen 5 VSKESILELAELLENALSNLKSSS-ISMAQWSQLSDKLQQLHSSCSGYADS--IIQPHAKFAFRELLSRLESQSRQLRSC 81 (110)
T ss_dssp --HHHHHHHHHHHHHHCCCTTTC-------HHHHHHHHHHHHHHHHHHGGG---S-CCCHHHHHHHHHHHHHHHHHHCHS
T ss_pred ccHHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHc--CcCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 344556655555555555543331 11222235666676666655555554 235667788888888888888888888
Q ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHh
Q 006494 104 NYGSKIYLAAESEAVMSRFHAVYDKLYEAL 133 (643)
Q Consensus 104 ~~~Sklyl~~~~~~i~~~~~~~~~~l~~~L 133 (643)
..++. .-..+.++.+|+...++|...+
T Consensus 82 ~s~~~---~~~~~~l~~~l~~~ikeI~~~V 108 (110)
T PF08919_consen 82 GSSNS---SPENQRLVSDLQNTIKEISNIV 108 (110)
T ss_dssp SSSSS---STT--THHHHHHHHHHHHHHHH
T ss_pred cCCCC---CcccHHHHHHHHHHHHHHHHHh
Confidence 65433 3445677888888888877654
No 421
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=29.00 E-value=5.8e+02 Score=25.75 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=0.0
Q ss_pred ChHHHHHHcc-----------cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChh--------hHHHH
Q 006494 486 GIPPLVNLLR-----------YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG--------MVDEA 546 (643)
Q Consensus 486 ~i~~Lv~lL~-----------s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~--------~~~~A 546 (643)
.+|.|+.+|. +++......|+..|..+ -+..+.++++++++.++.. +.+..
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Q ss_pred HHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494 547 LSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT--PKNKECATSVLLELGLNNSYFILAALQ 607 (643)
Q Consensus 547 l~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~~~~~~~~~~~ 607 (643)
-.+|+.++. |-+..|.+++.+.+ .-+|..|..+|..+...++..+..+++
T Consensus 102 ~~ilasv~~-----------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 102 PRILASVGD-----------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHhC-----------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
No 422
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.64 E-value=6.5e+02 Score=29.70 Aligned_cols=152 Identities=14% Similarity=0.036 Sum_probs=92.8
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHH
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIG 564 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~ 564 (643)
.-..+...+.+++...-+..+.++.+++.-.....+- ...-+++-..-....-..+.+....+|..++.. ++....+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3356666777778888888888888887533221111 111112222222222234566778888899886 55555554
Q ss_pred h-cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH--HHHHHHHHc-------CcHHHHHHHHhh----CCHHHHHHHH
Q 006494 565 R-LSFIETLVEIIKNGTPKNKECATSVLLELGLNNS--YFILAALQY-------GVYEHLVEITRC----GTNRGQRKAN 630 (643)
Q Consensus 565 ~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~~~~~-------g~i~~L~~ll~~----g~~~~k~~A~ 630 (643)
. .++...++.++-++.++..+.|..+|......++ +....+.+. |+...|..+... ..+++-+...
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~ 600 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLM 600 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 4 5889999999999999999999999999886433 333444442 333344444432 2456666666
Q ss_pred HHHHHhhh
Q 006494 631 SLLQHMSK 638 (643)
Q Consensus 631 ~lL~~l~~ 638 (643)
-+|..|++
T Consensus 601 DIi~~Lcd 608 (727)
T PF12726_consen 601 DIIEVLCD 608 (727)
T ss_pred HHHHHHcC
Confidence 66666654
No 423
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.88 E-value=3.3e+02 Score=24.81 Aligned_cols=111 Identities=18% Similarity=0.102 Sum_probs=57.0
Q ss_pred CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494 485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG 564 (643)
Q Consensus 485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~ 564 (643)
..-..+..+|.+++..+++.|+.||+.--. + .+.. .=..|-.++.+ ..+.++-.... +.......+.--
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~---~l~p--Y~d~L~~Lldd--~~frdeL~~f~--~~~~~~~I~~eh 85 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD--P---YLTP--YKDNLENLLDD--KTFRDELTTFN--LSDESSVIEEEH 85 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---HHHh--HHHHHHHHcCc--chHHHHHHhhc--ccCCcCCCCHHH
Confidence 344677899999999999999999876321 1 1111 11334445543 23444332222 222221222222
Q ss_pred hcCcHHHHHHHHhc------CChHH-HHHHHHHHHHhccCCHHHHHHHH
Q 006494 565 RLSFIETLVEIIKN------GTPKN-KECATSVLLELGLNNSYFILAAL 606 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~------~s~~~-ke~A~~~L~~L~~~~~~~~~~~~ 606 (643)
+.+++|.++++|-. ++... ...=..+|..|.....+.....+
T Consensus 86 R~~l~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~El~~Fl 134 (141)
T PF07539_consen 86 RPELMPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLSEEELGLFL 134 (141)
T ss_pred HhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHHHHHHH
Confidence 34678888888731 22111 12223466677766665544443
No 424
>PRK09169 hypothetical protein; Validated
Probab=27.69 E-value=1.6e+03 Score=30.14 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 006494 362 EICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLN 429 (643)
Q Consensus 362 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n 429 (643)
.+..+++-|+. ++......++..|.......+..+..+-..++...|-.+-+.++......++..|..
T Consensus 164 ~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~ 232 (2316)
T PRK09169 164 SFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAE 232 (2316)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 44555555542 233333444444433332334333333222222222222233444444555544444
No 425
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.42 E-value=31 Score=34.94 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=21.6
Q ss_pred cccHHhHHHHHhc------------CCCCCCCCCcccCCCC
Q 006494 293 TYERESIQRWLNS------------NHKTCPKTGQILDHLS 321 (643)
Q Consensus 293 t~~r~~I~~w~~~------------~~~~cP~~~~~l~~~~ 321 (643)
-.||+|+.+||-. |..+||.|++.+...+
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 3567899999852 4567999999876543
No 426
>PLN02436 cellulose synthase A
Probab=27.26 E-value=43 Score=40.42 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=35.9
Q ss_pred ccCccCcccc-----cCCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 273 FLCPVTLEIM-----TDPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 273 f~Cpi~~~~m-----~dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
-.|.||++=. -+|-+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3799998653 345444 367789999998778888999999998876
No 427
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.16 E-value=5.5 Score=31.50 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
+..||.|..-|. ...|+.+|..|-..+-. ...||-|+++|..
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE----EeCCEEECcccccccee--cccCCCcccHHHH
Confidence 467999987643 33377888887443222 2579999998863
No 428
>PHA03096 p28-like protein; Provisional
Probab=26.92 E-value=38 Score=34.83 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=30.2
Q ss_pred ccCccCcccccCC--------eecCCcccccHHhHHHHHhcC--CCCCCCCCcc
Q 006494 273 FLCPVTLEIMTDP--------VIVATGQTYERESIQRWLNSN--HKTCPKTGQI 316 (643)
Q Consensus 273 f~Cpi~~~~m~dP--------v~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~ 316 (643)
-.|.||++.-.+- .+..|.|+||-.||..|.... ..+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 4588887765532 233589999999999999743 3456666543
No 429
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.67 E-value=2.1e+02 Score=30.20 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHhhcCCCchHHHHhcC--cHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHh-------cC
Q 006494 500 RGKKDAATALFNLSINQSNKSRAIKAG--IIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGR-------LS 567 (643)
Q Consensus 500 ~~k~~A~~aL~nLs~~~en~~~iv~~G--~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~-------~g 567 (643)
.++..|+.++..+...+..-.++...+ .+..|++++..+ ...++..|+.+|..++.+......|.. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 345556666666666666777888766 999999999753 446788999999999987544444432 36
Q ss_pred cHHHHHH
Q 006494 568 FIETLVE 574 (643)
Q Consensus 568 ~i~~Lv~ 574 (643)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6666654
No 430
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.52 E-value=3.4e+02 Score=34.75 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=80.7
Q ss_pred cCChHHHHHHH----ccCCHHHHHHHHHHHHHc-cccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494 443 EGAIPAIIEIL----QNGTNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517 (643)
Q Consensus 443 ~g~i~~Lv~lL----~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e 517 (643)
..+++.++.+. ++.++.++..++.....+ ...+. ..+..+|..|+..+.+|+..-...|+.+|..|+..
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~-- 503 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK-- 503 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--
Confidence 45777777654 567777777666555443 22222 23345778999999999887778899999999963
Q ss_pred chHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH----HHHHHH
Q 006494 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC----ATSVLL 592 (643)
Q Consensus 518 n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~----A~~~L~ 592 (643)
+...+.. +-.+..+++.+.+=+..-......+|+.|+........-...+.--.+-+.|.+.++..|.. |+..+.
T Consensus 504 ~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 504 NPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp -HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 3333333 33445555555543344456678888888864321111111222222333555566655543 444455
Q ss_pred Hhcc
Q 006494 593 ELGL 596 (643)
Q Consensus 593 ~L~~ 596 (643)
.++.
T Consensus 584 ~la~ 587 (1426)
T PF14631_consen 584 HLAA 587 (1426)
T ss_dssp HTT-
T ss_pred HHHH
Confidence 5554
No 431
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=26.35 E-value=5.8e+02 Score=24.40 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=67.0
Q ss_pred ChHHHHHH-cccCChhhHHHHHHHHHHhhcCCCchHHHHh-----cC-----------cH----HHHHHHhcc-CChhhH
Q 006494 486 GIPPLVNL-LRYGSIRGKKDAATALFNLSINQSNKSRAIK-----AG-----------II----PSLLKLLED-KALGMV 543 (643)
Q Consensus 486 ~i~~Lv~l-L~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-----~G-----------~v----~~Lv~lL~~-~~~~~~ 543 (643)
.-+.|+.. +.+.++.++..|+.+|..|-.....--...+ .+ .+ ..|+..|.. .+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 34445544 5677889999999999888643211111111 01 11 234444543 466778
Q ss_pred HHHHHHHHHHhCC-hhhH--HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 544 DEALSILQLLASH-PEGR--NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 544 ~~Al~iL~nLa~~-~~~~--~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
...+++|..|..+ |-.| ..+.. ..+..+-.++.+.++..+..++.++..+.+.
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8899999999987 4333 22221 2445555566678888888888888777654
No 432
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.25 E-value=9.4e+02 Score=26.81 Aligned_cols=266 Identities=11% Similarity=-0.006 Sum_probs=128.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
+.+..+....++++...+..|++.|.+.+..-|....... .-.+..+++-| ...+.+++-.++.+|.-+...-.++..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 4566666667777778888899999998865343322222 22344455544 444678888888888766533333322
Q ss_pred HH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc----cCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 440 IA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN----LNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 440 i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~----~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
.- --.+.-.+..+..+.+++.|.+|......|+.....+..++- .+...+|+-.|.+.++.+ -.|+......|.
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 11 112233455566778888998888888888754443333222 233344554556655532 234555444443
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHH-HHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVD-EALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~-~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
-.-.+... .++++...+...- ..++ ..-+++.--.-+++.--.. ......++.+.-+..++.|+..--+
T Consensus 416 p~l~rke~--~~~~q~~ld~~~~---~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~ 485 (533)
T KOG2032|consen 416 PNLVRKEL--YHLFQESLDTDMA---RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTR 485 (533)
T ss_pred chhHHHHH--HHHHhhhhHHhHH---HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHH
Confidence 21112221 2233322211100 0000 0000000000111111000 1111222233334555555544333
Q ss_pred hccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.--+-. ..+...-..-....|..+.+..-+.+++.|.+.|..+.+
T Consensus 486 ~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 486 SVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 332221 222222112246667777778888898888888887764
No 433
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.37 E-value=7.3e+02 Score=25.22 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=74.0
Q ss_pred CChHHHHHHcccC--ChhhHHHHHHHHHHhhcCCC--------chHHHHhcCcHHHHHHHhccCC----hhhHHHHHHHH
Q 006494 485 NGIPPLVNLLRYG--SIRGKKDAATALFNLSINQS--------NKSRAIKAGIIPSLLKLLEDKA----LGMVDEALSIL 550 (643)
Q Consensus 485 g~i~~Lv~lL~s~--~~~~k~~A~~aL~nLs~~~e--------n~~~iv~~G~v~~Lv~lL~~~~----~~~~~~Al~iL 550 (643)
|.++.+..++-.| +...-..++..|..|...+. ++-.+.=.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4445555555444 34455566667776665433 2333333456777777776554 23455666777
Q ss_pred HHHhCChhhHHHHHhcCcHHHHHHHH-hcCChHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHH
Q 006494 551 QLLASHPEGRNEIGRLSFIETLVEII-KNGTPKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRK 628 (643)
Q Consensus 551 ~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~ 628 (643)
+.+|.... ...+..++... +..-...++....+...|+..- +++. ..++..|..++.+|.+-.|.+
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~-----~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHE-----FQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhH-----HHHHHHHHHHHhCCcHHHHHH
Confidence 77774211 12233333322 2222333444444555555432 2222 234556777777777777777
Q ss_pred HHHHHHHhhh
Q 006494 629 ANSLLQHMSK 638 (643)
Q Consensus 629 A~~lL~~l~~ 638 (643)
...+|+.+-.
T Consensus 208 ~L~iL~~ll~ 217 (262)
T PF14225_consen 208 TLQILKVLLP 217 (262)
T ss_pred HHHHHHHHhc
Confidence 7777776643
No 434
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=24.70 E-value=55 Score=39.86 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=29.3
Q ss_pred cCCCCCCcccCccCc--ccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 265 QTMLVPHEFLCPVTL--EIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 265 ~~~~~p~~f~Cpi~~--~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
+-.++|+++.||=|. +...|+-+- +| | +-.+..||.|+.++..
T Consensus 907 EVNPL~PHY~Cp~Cky~Ef~~d~svg-sG--f---------DLpdK~CPkCg~pl~k 951 (1444)
T COG2176 907 EVNPLPPHYLCPECKYSEFIDDGSVG-SG--F---------DLPDKDCPKCGTPLKK 951 (1444)
T ss_pred ccCCCCccccCCCCceeeeecCCCcC-CC--C---------CCCCCCCCcCCCcccc
Confidence 445789999999884 566666332 12 2 2236789999999863
No 435
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.57 E-value=4.7e+02 Score=27.72 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=58.9
Q ss_pred ChHHHHHHHccC-------CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc----------CChhhHHHHHH
Q 006494 445 AIPAIIEILQNG-------TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY----------GSIRGKKDAAT 507 (643)
Q Consensus 445 ~i~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s----------~~~~~k~~A~~ 507 (643)
.+|-++.++..+ +.........++..|..++...-...-...+|.++.++-+ .....+..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 355555555432 3444445555666665554443322223467887777622 23478889999
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHhccCChh--hHHHHHHHHHHH
Q 006494 508 ALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG--MVDEALSILQLL 553 (643)
Q Consensus 508 aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~--~~~~Al~iL~nL 553 (643)
.|..+|..-.+.-..+...+...|.+.|.++... ..--|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999986433332223444455677777653322 234455555444
No 436
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.54 E-value=4.7e+02 Score=22.95 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH---hcCChHHHHHHHHHHHHhccCCHHHHHHHHH--cCcHHHHH
Q 006494 541 GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII---KNGTPKNKECATSVLLELGLNNSYFILAALQ--YGVYEHLV 615 (643)
Q Consensus 541 ~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~ 615 (643)
+.....+.-|+.++.+......| +..|.+-| ...+.+..-+|+.+|..|+.+++.....-.. ...+..|.
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I-----~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEI-----MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHH-----HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhccccHHHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 44455566677777665444433 45566666 4455678889999999999877664444333 24555555
Q ss_pred HHHh---hCCH---HHHHHHHHHHHHhhhc
Q 006494 616 EITR---CGTN---RGQRKANSLLQHMSKR 639 (643)
Q Consensus 616 ~ll~---~g~~---~~k~~A~~lL~~l~~~ 639 (643)
.+-. .|.+ .+|++|..++.+|.+.
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 5532 2433 4899999999998764
No 437
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=23.45 E-value=51 Score=28.53 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=27.2
Q ss_pred CCeecCC--cccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494 284 DPVIVAT--GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 284 dPv~~~~--g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 337 (643)
.||.++- --|.||.|+++|-.-. . +.+|+.. -...+-..|..|..
T Consensus 64 HPVFiAQHATatCCRgCL~KWH~Ip-----~-gr~Lt~~---eq~yiv~vi~~Wi~ 110 (111)
T PF13811_consen 64 HPVFIAQHATATCCRGCLEKWHGIP-----K-GRELTEE---EQAYIVDVIMRWIE 110 (111)
T ss_pred CCeeeecCCCccchHHHHHHHhCCC-----C-CCCCCHH---HHHHHHHHHHHHHh
Confidence 7998763 2379999999998631 1 1222211 12345566788864
No 438
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.24 E-value=4.4e+02 Score=28.39 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=62.8
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHH
Q 006494 330 NLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPL 408 (643)
Q Consensus 330 ~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~L 408 (643)
.+|...|..-+-+ | ...+..+..+.+.|...++.+...|+..+..++.... ..|..+....++..|
T Consensus 27 ~~IlDvCD~v~~~-~------------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 27 SLILDVCDKVGSD-P------------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred HHHHHHHHhhcCC-C------------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 3467778754433 1 1246789999999999999999999999888875332 335556667888889
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhcc
Q 006494 409 VQLLS-YPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 409 v~lL~-~~~~~~~~~a~~~L~nLs 431 (643)
..++. +..+.+.+....++.+++
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHH
Confidence 99998 445666665555555554
No 439
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.96 E-value=78 Score=25.04 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=27.2
Q ss_pred cccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhh
Q 006494 291 GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328 (643)
Q Consensus 291 g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~l 328 (643)
-+|||..|-+..|. ..||.|+-.|.-.-..|...|
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 58999999988774 589999988877666665444
No 440
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.61 E-value=64 Score=35.55 Aligned_cols=59 Identities=14% Similarity=0.056 Sum_probs=36.3
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 578 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
..+++.++.|..++.+++.+...+...+-....-..+++++...-++.-+.|...+..+
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAIL 397 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHh
Confidence 35788899999999888877655444333444455566666655555544444444443
No 441
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.57 E-value=62 Score=30.32 Aligned_cols=45 Identities=18% Similarity=0.485 Sum_probs=30.5
Q ss_pred cCccCcccccCCee-------cCCcccccHHhHHHHHhcC-----C-----CCCCCCCcccC
Q 006494 274 LCPVTLEIMTDPVI-------VATGQTYERESIQRWLNSN-----H-----KTCPKTGQILD 318 (643)
Q Consensus 274 ~Cpi~~~~m~dPv~-------~~~g~t~~r~~I~~w~~~~-----~-----~~cP~~~~~l~ 318 (643)
-|-||..+--|-.+ +.||+.|..-|+..|+..- . ..||.|..|+.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 46666554433222 5799999999999999731 1 24999987764
No 442
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.45 E-value=1.2e+02 Score=28.06 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=41.2
Q ss_pred HHHHHhccC-ChhhHHHH---HHHHHHHhCChhh--------HHHHHh--cCc--HHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 530 SLLKLLEDK-ALGMVDEA---LSILQLLASHPEG--------RNEIGR--LSF--IETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 530 ~Lv~lL~~~-~~~~~~~A---l~iL~nLa~~~~~--------~~~i~~--~g~--i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
.|+++|.+. .+++-+.| +..|..++..... .-.+.. .|+ |.+|+.+|.+.++.....|+.+|.+
T Consensus 41 ~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 41 FLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 467777653 33443333 4556666654221 111111 133 7888888877777777777777764
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHH
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQ 626 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k 626 (643)
..-- .+...-+..+... +..+|
T Consensus 121 TlLv----------yDaf~dv~~~ak~-N~~Ak 142 (154)
T PF11791_consen 121 TLLV----------YDAFNDVAELAKA-NAYAK 142 (154)
T ss_dssp --TT----------CCHHHHHHHHHHT--HHHH
T ss_pred hHHH----------HhhHHHHHHHHHc-CHHHH
Confidence 3221 2334555555555 55444
No 443
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=22.08 E-value=3.6e+02 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006494 50 QRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKD 102 (643)
Q Consensus 50 ~~k~~~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~ 102 (643)
+-+....|..||+-+.-+||.++-+ +....|..|-.++..++.+...
T Consensus 167 IikDlK~Ln~RVsAlSTVLeDVQAa------sIsRqFtsL~KaI~eLk~lA~~ 213 (231)
T PHA02687 167 ILADFKDLTGRVKALSSVLTDVQAS------GVRRSFSGLGKALTEAAAIAAT 213 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566677889999999999999973 7788999999999999988764
No 444
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=21.65 E-value=4.6e+02 Score=25.00 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
.+..++.+++..-+.+..++..|+..+....+.+-.|-. -.+|.|+.+..++++.++..|...+..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 345677778877788999999999988877654433322 25789999999999999999999988875
No 445
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=21.50 E-value=1.2e+02 Score=28.55 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=32.0
Q ss_pred HHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006494 59 RRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCN 104 (643)
Q Consensus 59 r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 104 (643)
.+-.-|..++||++..-.+--.-...+.+.|..-+..||.|++.|-
T Consensus 135 ~kY~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 135 TKYADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred hHHHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 3444566788888642112122346678899999999999999994
No 446
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.29 E-value=2.4e+02 Score=24.67 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=30.0
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 006494 568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA 605 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~ 605 (643)
+|+.|+.-|.+.++.+...|+.+|...|..+ .+...+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 5788888898889999999999999999876 444433
No 447
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.11 E-value=1e+03 Score=25.46 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHHHHhhcCCCch-------------HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 497 GSIRGKKDAATALFNLSINQSNK-------------SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 497 ~~~~~k~~A~~aL~nLs~~~en~-------------~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
.+.+.|..|+..+..|+...... ..+...-++|-|. -=.+..+-++-.|++.+......- .++.+
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l 344 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL 344 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH
Confidence 46677778888888898755321 2222233333333 001234456666777777666541 22333
Q ss_pred HhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 564 GRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
.+++|.++..|.+.+.-+...|+.++
T Consensus 345 --~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 --LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 25899999999999988888887653
No 448
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=21.08 E-value=94 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 337 (643)
..+|.-|.||-|++ .+-||-+. + ..++..||.|+..... .+.+-..--+.-..|.+
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~~--k-----------~~~h~~C~~CG~y~~~-~V~~l~epIDVY~~wiD 71 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKIK--K-----------NIAIITCGNCGLYTEF-EVPSVYDEVDVYNKFID 71 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeecC--C-----------CcceEECCCCCCccCE-ECCccccchhhHHHHHH
Confidence 46789999999995 23333332 2 2457789999876543 22322222233456754
No 449
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=21.07 E-value=2.2e+02 Score=23.99 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=45.5
Q ss_pred CcchhhhhHHHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Q 006494 46 FRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDC-NYGS 107 (643)
Q Consensus 46 ~~~~~~k~~~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c-~~~S 107 (643)
...+.+++-..|++++.-..|+++.+...+ -+...-...+..-...-++|+.|+..- ..|+
T Consensus 7 ~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~ 68 (94)
T cd08329 7 DLSLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVLVKGN 68 (94)
T ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHHhhhH
Confidence 346778888899999988999999998764 445665666665555669999999875 3344
No 450
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.80 E-value=2.8e+02 Score=23.83 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=52.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..+..+.+.++...+.-|-.++.++-.++.+..............+.+......+++..|.+-..++..-.
T Consensus 37 ~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 37 EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 45666777788888888889999999999876544444444444777777778889999998888776543
No 451
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.70 E-value=4.8e+02 Score=24.15 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=54.2
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh-cC-cHHHHHH-HHhcC--ChHHHHHHHHHHHHh
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR-LS-FIETLVE-IIKNG--TPKNKECATSVLLEL 594 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~-~g-~i~~Lv~-lL~~~--s~~~ke~A~~~L~~L 594 (643)
..+++....+.|++.+.+.+..+...++.++.+|... .+..+.. .+ .+..+.. ++.+. +...|+.++.++..+
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3456677888888888776788889999999999854 2333322 23 3455555 55543 346788899999999
Q ss_pred ccCCH
Q 006494 595 GLNNS 599 (643)
Q Consensus 595 ~~~~~ 599 (643)
|....
T Consensus 145 ~~~p~ 149 (168)
T PF12783_consen 145 CKDPQ 149 (168)
T ss_pred HhChh
Confidence 98543
No 452
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.62 E-value=1.3e+03 Score=26.23 Aligned_cols=130 Identities=23% Similarity=0.105 Sum_probs=67.4
Q ss_pred ChHHHHHHHccC----CHHHHHHHHHHHHHcc----ccccccchhhccCChHHHHHHccc----CChhhHHHHHHHHHHh
Q 006494 445 AIPAIIEILQNG----TNEARENSAAALFSLS----MLDENRVMVGNLNGIPPLVNLLRY----GSIRGKKDAATALFNL 512 (643)
Q Consensus 445 ~i~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls----~~~~~k~~i~~~g~i~~Lv~lL~s----~~~~~k~~A~~aL~nL 512 (643)
.+..+..+++++ ...++..|.-++.+|. ...+.+........++.|...|.. ++..-+..++.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666666643 3445555555555543 111111111123355666665543 3444455667777776
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhc-c--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLE-D--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKECA 587 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~-~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A 587 (643)
-. ...++.|..++. + .+..+...|+.+|..++.... ..+-+.+..++.+. +++.|-.|
T Consensus 474 g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHH
Confidence 43 123445555554 2 244678888999988764210 12345667777663 35566555
Q ss_pred HHHH
Q 006494 588 TSVL 591 (643)
Q Consensus 588 ~~~L 591 (643)
+.+|
T Consensus 537 ~~~l 540 (574)
T smart00638 537 VLVL 540 (574)
T ss_pred HHHH
Confidence 4444
No 453
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.51 E-value=33 Score=20.14 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=8.4
Q ss_pred ccCccCcccccCC
Q 006494 273 FLCPVTLEIMTDP 285 (643)
Q Consensus 273 f~Cpi~~~~m~dP 285 (643)
|.||+|...+.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4677777666655
No 454
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.18 E-value=92 Score=32.01 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=34.6
Q ss_pred CCCcccCccCccccc--------------C---C--eecCCcccccHHhHHHHHh----cC----CCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIMT--------------D---P--VIVATGQTYERESIQRWLN----SN----HKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~--------------d---P--v~~~~g~t~~r~~I~~w~~----~~----~~~cP~~~~~l~~ 319 (643)
=+.+-.||+|+.+-- | | ...||||........-|-+ .| +..||+|...|.-
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 356788999976521 2 1 2358999888887777765 22 2349999888764
No 455
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=20.16 E-value=23 Score=25.00 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=9.2
Q ss_pred CCCCCCCCCcccCCCCCC
Q 006494 306 NHKTCPKTGQILDHLSLA 323 (643)
Q Consensus 306 ~~~~cP~~~~~l~~~~l~ 323 (643)
|...||.|+..+......
T Consensus 18 g~~vC~~CG~Vl~e~~i~ 35 (43)
T PF08271_consen 18 GELVCPNCGLVLEENIID 35 (43)
T ss_dssp TEEEETTT-BBEE-TTBS
T ss_pred CeEECCCCCCEeeccccc
Confidence 344677777666654443
Done!