Query 006494
Match_columns 643
No_of_seqs 422 out of 2742
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 02:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 5.7E-30 1.9E-34 270.6 22.6 263 376-639 47-335 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 2.5E-29 8.6E-34 276.1 23.4 278 362-640 3-362 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 1.7E-28 5.8E-33 272.8 26.6 279 361-640 48-386 (584)
4 3nmz_A APC variant protein; pr 100.0 6.2E-29 2.1E-33 270.4 21.1 262 378-640 165-452 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 5E-28 1.7E-32 265.7 25.7 282 359-642 42-453 (457)
6 3now_A UNC-45 protein, SD10334 100.0 3.6E-27 1.2E-31 270.5 26.8 280 359-638 419-737 (810)
7 3l6x_A Catenin delta-1; cateni 100.0 6.2E-27 2.1E-31 260.2 25.1 281 359-641 88-479 (584)
8 3nmz_A APC variant protein; pr 99.9 1.3E-26 4.3E-31 252.2 22.1 281 358-638 67-408 (458)
9 3nmw_A APC variant protein; AR 99.9 5.9E-27 2E-31 247.5 18.9 243 359-601 71-339 (354)
10 3ul1_B Importin subunit alpha- 99.9 8E-26 2.7E-30 251.8 28.4 280 359-638 98-387 (510)
11 3tpo_A Importin subunit alpha- 99.9 2.1E-25 7.3E-30 249.5 30.2 280 359-638 117-406 (529)
12 3now_A UNC-45 protein, SD10334 99.9 8.4E-26 2.9E-30 259.1 23.0 281 359-640 493-784 (810)
13 3ul1_B Importin subunit alpha- 99.9 3.9E-25 1.3E-29 246.2 25.6 277 362-638 58-345 (510)
14 4b8j_A Importin subunit alpha- 99.9 3.2E-24 1.1E-28 239.6 31.4 281 359-639 115-401 (528)
15 4hxt_A De novo protein OR329; 99.9 1.1E-24 3.7E-29 218.1 23.4 238 362-599 3-244 (252)
16 4hxt_A De novo protein OR329; 99.9 1.8E-24 6.1E-29 216.6 24.3 238 403-640 2-243 (252)
17 4b8j_A Importin subunit alpha- 99.9 6.5E-24 2.2E-28 237.1 31.1 278 361-638 74-358 (528)
18 4db8_A Armadillo-repeat protei 99.9 9.3E-25 3.2E-29 219.5 20.3 236 362-597 13-252 (252)
19 3tpo_A Importin subunit alpha- 99.9 3.5E-24 1.2E-28 239.6 25.2 280 359-638 160-449 (529)
20 1wa5_B Importin alpha subunit; 99.9 2.5E-23 8.4E-28 232.7 31.3 281 359-639 128-413 (530)
21 4db8_A Armadillo-repeat protei 99.9 4.1E-24 1.4E-28 214.8 20.4 236 403-638 12-251 (252)
22 2jdq_A Importin alpha-1 subuni 99.9 1.3E-22 4.3E-27 221.0 33.3 277 361-638 64-347 (450)
23 1wa5_B Importin alpha subunit; 99.9 7.7E-23 2.6E-27 228.6 31.6 278 361-638 87-370 (530)
24 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-22 3.6E-27 226.6 23.9 276 360-638 58-339 (529)
25 2jdq_A Importin alpha-1 subuni 99.9 3.1E-22 1.1E-26 217.9 26.9 278 360-638 106-390 (450)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-22 3.7E-27 226.4 21.1 277 359-639 15-296 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 3.8E-22 1.3E-26 228.4 25.5 278 360-638 13-336 (644)
28 3tt9_A Plakophilin-2; cell adh 99.9 6.1E-23 2.1E-27 202.9 16.0 195 361-556 8-230 (233)
29 3opb_A SWI5-dependent HO expre 99.9 9.2E-22 3.2E-26 221.7 22.3 280 359-638 374-728 (778)
30 2z6h_A Catenin beta-1, beta-ca 99.9 3.1E-21 1.1E-25 220.8 25.9 277 361-639 98-383 (644)
31 3tt9_A Plakophilin-2; cell adh 99.9 3.3E-22 1.1E-26 197.6 15.3 194 403-597 8-230 (233)
32 2z6g_A B-catenin; FULL-length, 99.9 6.1E-21 2.1E-25 222.7 24.3 276 360-638 191-472 (780)
33 4db6_A Armadillo repeat protei 99.9 5.5E-21 1.9E-25 186.5 20.1 197 401-597 10-210 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 3.5E-21 1.2E-25 224.7 20.7 276 360-639 149-429 (780)
35 4db6_A Armadillo repeat protei 99.9 8.3E-21 2.8E-25 185.2 20.0 197 360-556 11-210 (210)
36 2f42_A STIP1 homology and U-bo 99.8 9.5E-21 3.2E-25 177.5 7.1 77 266-342 100-176 (179)
37 2kre_A Ubiquitin conjugation f 99.8 1.1E-20 3.6E-25 161.5 6.2 75 265-340 22-96 (100)
38 2kr4_A Ubiquitin conjugation f 99.8 9.2E-21 3.1E-25 157.2 5.2 74 267-341 9-82 (85)
39 1wgm_A Ubiquitin conjugation f 99.8 2E-20 6.7E-25 159.2 6.5 75 267-342 17-92 (98)
40 3opb_A SWI5-dependent HO expre 99.8 9.7E-19 3.3E-23 197.2 21.5 277 360-637 333-682 (778)
41 1xqr_A HSPBP1 protein; armadil 99.8 1.8E-18 6.1E-23 177.9 20.5 222 417-638 54-287 (296)
42 1xqr_A HSPBP1 protein; armadil 99.8 1.2E-17 4.2E-22 171.7 23.9 238 358-596 25-287 (296)
43 1t1h_A Gspef-atpub14, armadill 99.8 7E-19 2.4E-23 143.8 6.9 76 267-342 3-78 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 1.8E-17 6.1E-22 169.7 13.2 78 265-342 201-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 6.6E-18 2.3E-22 142.9 4.6 73 268-340 3-84 (94)
46 3m62_A Ubiquitin conjugation f 99.7 8.2E-17 2.8E-21 183.2 9.9 75 266-341 885-960 (968)
47 2bay_A PRE-mRNA splicing facto 99.6 4.7E-16 1.6E-20 119.7 2.0 55 272-327 3-58 (61)
48 3ztg_A E3 ubiquitin-protein li 99.5 9.7E-15 3.3E-19 123.1 7.0 76 267-342 8-86 (92)
49 3grl_A General vesicular trans 99.5 9.5E-13 3.2E-17 145.0 23.3 276 359-638 19-342 (651)
50 3htk_C E3 SUMO-protein ligase 99.5 1.6E-13 5.3E-18 134.3 11.4 71 268-338 177-251 (267)
51 3fl2_A E3 ubiquitin-protein li 99.4 7.8E-14 2.7E-18 124.4 4.6 70 269-338 49-119 (124)
52 1z6u_A NP95-like ring finger p 99.4 2E-13 6.7E-18 125.6 4.6 69 269-337 75-144 (150)
53 3grl_A General vesicular trans 99.3 6.8E-11 2.3E-15 130.3 23.3 280 359-638 58-394 (651)
54 2y43_A E3 ubiquitin-protein li 99.3 8.3E-13 2.8E-17 112.8 3.3 70 269-339 19-89 (99)
55 3lrq_A E3 ubiquitin-protein li 99.3 2E-12 7E-17 110.4 3.9 70 269-338 19-89 (100)
56 2egp_A Tripartite motif-contai 99.3 3.9E-13 1.3E-17 109.7 -0.8 66 267-332 7-78 (79)
57 1oyz_A Hypothetical protein YI 99.2 2.6E-10 8.8E-15 115.9 19.3 225 361-636 23-248 (280)
58 2ecw_A Tripartite motif-contai 99.2 2.5E-12 8.7E-17 106.2 3.5 66 267-332 14-84 (85)
59 2ckl_A Polycomb group ring fin 99.2 2.9E-12 9.9E-17 111.2 4.0 68 269-337 12-84 (108)
60 3ltm_A Alpha-REP4; protein eng 99.2 3.4E-10 1.2E-14 109.9 18.8 190 360-600 18-207 (211)
61 3ltm_A Alpha-REP4; protein eng 99.2 5.1E-10 1.7E-14 108.6 19.9 188 402-640 18-205 (211)
62 3hct_A TNF receptor-associated 99.2 3E-12 1E-16 113.0 3.5 69 267-335 13-81 (118)
63 2ecy_A TNF receptor-associated 99.2 9.1E-12 3.1E-16 97.8 5.6 56 267-322 10-65 (66)
64 2ecv_A Tripartite motif-contai 99.2 2.9E-12 9.8E-17 105.9 2.7 66 267-332 14-84 (85)
65 3l11_A E3 ubiquitin-protein li 99.2 2.1E-12 7.3E-17 113.4 1.5 69 268-336 11-86 (115)
66 2ckl_B Ubiquitin ligase protei 99.2 3.8E-12 1.3E-16 119.3 3.4 70 268-337 50-121 (165)
67 4ayc_A E3 ubiquitin-protein li 99.2 5.4E-12 1.8E-16 114.6 3.9 64 270-336 51-114 (138)
68 2csy_A Zinc finger protein 183 99.2 6E-12 2E-16 103.2 3.8 61 268-330 11-71 (81)
69 3ltj_A Alpharep-4; protein eng 99.2 1.2E-09 4.1E-14 105.1 20.6 187 359-596 12-198 (201)
70 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.4E-16 99.2 5.4 59 267-325 10-71 (74)
71 1jm7_B BARD1, BRCA1-associated 99.2 5.3E-12 1.8E-16 111.2 3.1 68 269-339 19-87 (117)
72 3ltj_A Alpharep-4; protein eng 99.2 1.2E-09 4.1E-14 105.1 18.8 185 403-638 14-198 (201)
73 1jm7_A BRCA1, breast cancer ty 99.2 1.5E-11 5.1E-16 107.4 4.7 68 270-337 19-88 (112)
74 2djb_A Polycomb group ring fin 99.2 3E-11 1E-15 96.5 5.9 58 267-325 10-68 (72)
75 2ysl_A Tripartite motif-contai 99.1 6.1E-11 2.1E-15 94.9 4.9 55 267-321 15-71 (73)
76 1g25_A CDK-activating kinase a 99.1 5.2E-11 1.8E-15 93.1 4.3 55 271-325 2-61 (65)
77 3knv_A TNF receptor-associated 99.1 1.6E-11 5.4E-16 111.6 0.8 67 267-333 26-101 (141)
78 3hcs_A TNF receptor-associated 99.1 4E-11 1.4E-15 112.9 3.5 69 267-335 13-81 (170)
79 1rmd_A RAG1; V(D)J recombinati 99.1 3.3E-11 1.1E-15 105.9 2.7 66 269-334 20-86 (116)
80 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4E-15 90.4 5.1 47 267-313 15-63 (63)
81 3ng2_A RNF4, snurf, ring finge 99.0 1.1E-10 3.7E-15 92.9 3.7 58 268-326 6-70 (71)
82 1oyz_A Hypothetical protein YI 99.0 6.5E-09 2.2E-13 105.4 17.8 201 400-638 20-221 (280)
83 4fdd_A Transportin-1; heat rep 99.0 3.1E-09 1.1E-13 125.1 14.6 273 360-638 173-471 (852)
84 2ct2_A Tripartite motif protei 98.9 6.8E-10 2.3E-14 92.2 5.8 54 267-320 10-69 (88)
85 2ecj_A Tripartite motif-contai 98.9 5.3E-10 1.8E-14 85.0 4.6 46 268-313 11-58 (58)
86 2d8t_A Dactylidin, ring finger 98.9 3.6E-10 1.2E-14 89.9 3.4 50 269-319 12-61 (71)
87 4fdd_A Transportin-1; heat rep 98.9 1E-08 3.5E-13 120.7 16.7 271 361-638 128-429 (852)
88 2xeu_A Ring finger protein 4; 98.9 3.2E-10 1.1E-14 88.1 2.1 55 271-326 2-63 (64)
89 2ea6_A Ring finger protein 4; 98.9 1.1E-09 3.6E-14 86.5 3.7 52 267-319 10-68 (69)
90 1e4u_A Transcriptional repress 98.8 2.7E-09 9.1E-14 86.2 5.3 55 268-322 7-65 (78)
91 2ect_A Ring finger protein 126 98.8 2.4E-09 8.3E-14 86.7 4.6 57 268-325 11-70 (78)
92 1b3u_A Protein (protein phosph 98.8 8.1E-08 2.8E-12 107.3 17.8 264 361-636 164-429 (588)
93 1b3u_A Protein (protein phosph 98.8 4.4E-08 1.5E-12 109.4 15.6 265 360-638 323-587 (588)
94 4gmo_A Putative uncharacterize 98.8 3.3E-08 1.1E-12 113.4 14.3 193 444-637 34-257 (684)
95 4gmo_A Putative uncharacterize 98.7 3.3E-08 1.1E-12 113.4 12.2 192 403-595 34-257 (684)
96 1ibr_B P95, importin beta-1 su 98.7 6.3E-08 2.2E-12 104.7 13.3 273 361-639 128-438 (462)
97 1chc_A Equine herpes virus-1 r 98.7 9.1E-09 3.1E-13 80.9 4.1 48 271-319 4-52 (68)
98 2ecm_A Ring finger and CHY zin 98.7 9.5E-09 3.2E-13 77.1 3.6 47 271-318 4-54 (55)
99 2ecn_A Ring finger protein 141 98.7 4.8E-09 1.6E-13 83.0 1.9 52 268-321 11-62 (70)
100 2ep4_A Ring finger protein 24; 98.7 2E-08 6.8E-13 80.4 5.5 52 268-320 11-65 (74)
101 4ap4_A E3 ubiquitin ligase RNF 98.7 6E-09 2.1E-13 93.4 2.5 55 270-325 5-66 (133)
102 2vgl_B AP-2 complex subunit be 98.7 4.9E-07 1.7E-11 101.9 18.6 264 360-637 120-418 (591)
103 1iym_A EL5; ring-H2 finger, ub 98.6 1.5E-08 5.1E-13 76.0 3.5 49 269-318 2-54 (55)
104 2kiz_A E3 ubiquitin-protein li 98.6 2.7E-08 9.2E-13 78.4 5.0 51 268-319 10-63 (69)
105 1bor_A Transcription factor PM 98.6 7.5E-09 2.6E-13 78.0 1.5 46 270-319 4-49 (56)
106 2vgl_B AP-2 complex subunit be 98.6 5.6E-07 1.9E-11 101.4 17.5 258 362-638 50-311 (591)
107 2l0b_A E3 ubiquitin-protein li 98.6 2.3E-08 8E-13 83.5 4.4 50 269-319 37-89 (91)
108 1x4j_A Ring finger protein 38; 98.6 3.1E-08 1.1E-12 79.5 3.9 50 269-319 20-72 (75)
109 1v87_A Deltex protein 2; ring- 98.6 4.6E-08 1.6E-12 85.3 5.0 50 270-319 23-94 (114)
110 2y1n_A E3 ubiquitin-protein li 98.5 7.4E-08 2.5E-12 100.5 4.6 50 271-320 331-380 (389)
111 4ic3_A E3 ubiquitin-protein li 98.5 3.2E-08 1.1E-12 79.2 1.3 45 270-319 22-67 (74)
112 3b2a_A TON_1937, putative unch 98.5 4.1E-06 1.4E-10 80.3 15.9 244 325-591 9-256 (265)
113 1qgr_A Protein (importin beta 98.4 1.2E-05 4.2E-10 94.2 21.0 273 361-639 128-438 (876)
114 4ap4_A E3 ubiquitin ligase RNF 98.4 7.5E-08 2.6E-12 86.2 1.5 57 269-326 69-132 (133)
115 2bpt_A Importin beta-1 subunit 98.4 7E-06 2.4E-10 96.0 18.4 271 361-638 369-668 (861)
116 1w63_A Adapter-related protein 98.3 1.2E-05 4.2E-10 90.9 19.3 255 363-638 72-379 (618)
117 1qgr_A Protein (importin beta 98.3 6.7E-06 2.3E-10 96.4 17.7 274 360-639 171-480 (876)
118 1w63_A Adapter-related protein 98.3 2.2E-05 7.7E-10 88.8 20.9 253 360-639 141-415 (618)
119 1ibr_B P95, importin beta-1 su 98.3 4.9E-06 1.7E-10 89.7 14.4 265 363-639 3-289 (462)
120 2ecg_A Baculoviral IAP repeat- 98.3 2.1E-07 7.3E-12 74.5 2.3 45 270-319 23-68 (75)
121 2bpt_A Importin beta-1 subunit 98.2 2E-05 6.8E-10 92.2 18.7 271 361-639 134-441 (861)
122 2ecl_A Ring-box protein 2; RNF 98.2 5E-07 1.7E-11 73.5 3.5 48 271-319 14-76 (81)
123 1u6g_C TIP120 protein, CAND1; 98.2 1.3E-06 4.5E-11 106.9 8.7 271 361-639 6-285 (1230)
124 2qk2_A LP04448P; mini spindles 98.2 1.3E-05 4.3E-10 79.3 13.8 184 447-638 18-205 (242)
125 1wim_A KIAA0161 protein; ring 98.2 2.9E-07 1E-11 77.2 1.5 66 271-337 4-83 (94)
126 2vje_A E3 ubiquitin-protein li 98.2 8.7E-07 3E-11 68.5 3.7 48 270-318 6-56 (64)
127 3b2a_A TON_1937, putative unch 98.1 1.1E-05 3.7E-10 77.4 10.5 221 404-637 34-260 (265)
128 2vje_B MDM4 protein; proto-onc 98.1 1.4E-06 4.7E-11 67.2 3.4 47 271-318 6-55 (63)
129 3dpl_R Ring-box protein 1; ubi 98.1 2.3E-06 7.8E-11 73.2 4.2 47 271-318 36-100 (106)
130 2qk2_A LP04448P; mini spindles 98.1 9.7E-06 3.3E-10 80.1 9.3 180 366-556 20-206 (242)
131 2yho_A E3 ubiquitin-protein li 98.0 1.2E-06 4.1E-11 70.8 0.7 45 270-319 16-61 (79)
132 3t6p_A Baculoviral IAP repeat- 98.0 1.4E-06 4.8E-11 90.4 1.0 46 269-319 292-338 (345)
133 1u6g_C TIP120 protein, CAND1; 97.9 3E-05 1E-09 94.7 12.3 229 359-598 46-286 (1230)
134 2vgl_A Adaptor protein complex 97.9 0.00058 2E-08 77.1 21.3 254 361-637 111-397 (621)
135 2vgl_A Adaptor protein complex 97.9 0.0005 1.7E-08 77.6 19.6 255 360-637 145-432 (621)
136 1te4_A Conserved protein MTH18 97.8 3.5E-06 1.2E-10 75.0 0.9 120 402-552 11-130 (131)
137 2d8s_A Cellular modulator of i 97.8 1.6E-05 5.5E-10 64.1 4.6 50 270-319 13-70 (80)
138 2qk1_A Protein STU2; STU2P, XM 97.8 0.00014 4.7E-09 72.4 12.5 188 449-638 21-220 (249)
139 2ea5_A Cell growth regulator w 97.8 1.6E-05 5.5E-10 62.1 3.9 45 270-319 13-58 (68)
140 3dad_A FH1/FH2 domain-containi 97.7 0.00044 1.5E-08 70.4 14.9 149 488-636 121-284 (339)
141 1te4_A Conserved protein MTH18 97.7 5.3E-06 1.8E-10 73.8 0.7 121 442-593 10-130 (131)
142 2qk1_A Protein STU2; STU2P, XM 97.7 9.6E-05 3.3E-09 73.5 9.1 187 366-555 21-220 (249)
143 4a0k_B E3 ubiquitin-protein li 97.7 6.2E-06 2.1E-10 71.5 0.0 45 273-318 49-111 (117)
144 1ho8_A Vacuolar ATP synthase s 97.7 0.00078 2.7E-08 71.9 16.1 230 407-637 171-475 (480)
145 3dad_A FH1/FH2 domain-containi 97.6 0.00099 3.4E-08 67.8 15.4 178 360-537 117-316 (339)
146 2db0_A 253AA long hypothetical 97.4 0.058 2E-06 49.8 22.3 214 359-596 30-246 (253)
147 2iw3_A Elongation factor 3A; a 97.4 0.013 4.5E-07 68.5 22.9 262 361-640 54-326 (986)
148 3tjz_B Coatomer subunit gamma; 97.3 0.002 6.9E-08 67.0 13.6 264 322-629 78-344 (355)
149 4ady_A RPN2, 26S proteasome re 97.2 0.019 6.5E-07 66.6 21.7 235 362-638 430-676 (963)
150 1ho8_A Vacuolar ATP synthase s 97.2 0.0072 2.4E-07 64.6 15.8 229 366-596 172-476 (480)
151 2db0_A 253AA long hypothetical 97.0 0.14 4.7E-06 47.4 20.8 210 403-636 32-244 (253)
152 3tjz_B Coatomer subunit gamma; 97.0 0.011 3.7E-07 61.5 15.6 245 362-638 69-316 (355)
153 2ct0_A Non-SMC element 1 homol 97.0 0.00067 2.3E-08 53.5 4.6 47 273-319 16-64 (74)
154 2iw3_A Elongation factor 3A; a 96.8 0.008 2.7E-07 70.3 13.1 262 361-642 14-284 (986)
155 1vyx_A ORF K3, K3RING; zinc-bi 96.6 0.0017 5.9E-08 49.0 4.2 48 271-318 5-58 (60)
156 4ffb_C Protein STU2; tubulin f 96.3 0.062 2.1E-06 53.7 14.8 186 366-556 14-213 (278)
157 3oc3_A Helicase MOT1, MOT1; re 96.3 0.018 6.3E-07 62.0 10.6 242 362-634 175-432 (800)
158 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0011 3.8E-08 67.1 0.4 48 271-318 307-372 (381)
159 4ady_A RPN2, 26S proteasome re 96.0 0.87 3E-05 52.9 23.9 204 360-598 471-678 (963)
160 3vk6_A E3 ubiquitin-protein li 96.0 0.0025 8.4E-08 52.5 2.1 45 275-319 4-49 (101)
161 2fv2_A RCD1 required for cell 95.7 0.56 1.9E-05 45.7 17.5 230 362-594 4-266 (268)
162 1wa5_C Importin alpha RE-expor 95.4 0.076 2.6E-06 62.9 12.7 252 376-637 376-669 (960)
163 2fv2_A RCD1 required for cell 95.1 0.18 6E-06 49.2 11.8 135 499-636 15-172 (268)
164 3i2d_A E3 SUMO-protein ligase 94.9 0.016 5.6E-07 59.6 4.2 64 271-334 248-315 (371)
165 4ffb_C Protein STU2; tubulin f 94.7 0.37 1.3E-05 47.9 13.7 186 408-599 14-215 (278)
166 2of3_A ZYG-9; multifunctional 94.6 0.27 9.4E-06 48.6 12.0 179 366-556 51-237 (266)
167 3ebb_A Phospholipase A2-activa 94.4 0.43 1.5E-05 48.3 13.3 172 362-535 104-285 (304)
168 3ebb_A Phospholipase A2-activa 94.1 0.3 1E-05 49.5 11.4 136 498-635 161-303 (304)
169 4fo9_A E3 SUMO-protein ligase 94.0 0.035 1.2E-06 57.0 4.2 65 270-334 213-281 (360)
170 2f31_A Diaphanous protein homo 93.4 1.8 6.3E-05 41.8 15.3 162 380-542 20-215 (233)
171 1upk_A MO25 protein; transfera 93.3 1.3 4.4E-05 45.0 14.1 198 361-558 78-286 (341)
172 3eg5_B Protein diaphanous homo 92.5 4.8 0.00016 42.0 17.8 161 380-542 86-281 (383)
173 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.059 2E-06 45.0 2.1 34 271-304 2-38 (101)
174 3oc3_A Helicase MOT1, MOT1; re 91.8 0.26 8.8E-06 53.3 6.9 186 376-591 243-431 (800)
175 2of3_A ZYG-9; multifunctional 91.4 1.8 6.2E-05 42.7 12.3 183 407-601 50-241 (266)
176 1wa5_C Importin alpha RE-expor 91.3 2.3 7.8E-05 50.1 15.4 218 372-594 416-668 (960)
177 3nw0_A Non-structural maintena 90.9 0.17 6E-06 49.3 4.4 49 272-320 180-230 (238)
178 1lrv_A LRV, leucine-rich repea 90.4 0.17 5.9E-06 49.6 3.8 21 406-426 101-121 (244)
179 2bnx_A Diaphanous protein homo 90.0 7.7 0.00026 40.4 16.4 162 381-542 25-219 (386)
180 2x1g_F Cadmus; transport prote 89.6 12 0.00041 43.9 19.6 171 456-637 476-662 (971)
181 3u0r_A Apoptosis inhibitor 5; 88.4 10 0.00034 40.4 15.5 132 361-511 29-160 (507)
182 2x1g_F Cadmus; transport prote 87.9 15 0.00051 43.0 18.9 211 415-638 476-722 (971)
183 2x19_B Importin-13; nuclear tr 87.4 31 0.0011 40.1 21.2 219 360-597 23-269 (963)
184 2x19_B Importin-13; nuclear tr 87.0 11 0.00038 44.0 17.1 173 454-636 459-644 (963)
185 1lrv_A LRV, leucine-rich repea 85.7 0.61 2.1E-05 45.6 4.3 20 406-425 125-144 (244)
186 2f31_A Diaphanous protein homo 85.0 6 0.00021 38.1 11.1 141 443-583 42-215 (233)
187 3eg5_B Protein diaphanous homo 82.8 8.6 0.00029 40.0 11.9 142 484-625 108-281 (383)
188 1upk_A MO25 protein; transfera 82.5 24 0.00083 35.7 14.4 156 480-636 73-236 (341)
189 3c2g_A SYS-1 protein; beta-cat 82.3 23 0.00077 36.1 13.8 112 509-621 266-379 (619)
190 3m1i_C Exportin-1; heat repeat 80.1 32 0.0011 40.7 17.1 221 360-597 15-264 (1049)
191 3u0r_A Apoptosis inhibitor 5; 79.2 18 0.00062 38.5 12.6 121 495-634 38-159 (507)
192 3gjx_A Exportin-1; transport, 75.8 39 0.0013 40.1 15.7 222 359-598 26-277 (1073)
193 3c2g_A SYS-1 protein; beta-cat 75.3 56 0.0019 33.2 14.1 127 426-553 265-401 (619)
194 3ibv_A Exportin-T; karyopherin 75.2 1.3E+02 0.0045 35.1 20.7 219 362-598 7-262 (980)
195 4hat_C Exportin-1; heat repeat 75.1 45 0.0015 39.4 16.2 221 359-597 14-264 (1023)
196 2bnx_A Diaphanous protein homo 75.0 18 0.00061 37.6 11.4 125 458-583 72-219 (386)
197 4hat_C Exportin-1; heat repeat 74.0 16 0.00054 43.3 11.8 141 456-599 465-621 (1023)
198 3m1i_C Exportin-1; heat repeat 71.2 42 0.0014 39.7 14.8 206 414-637 27-262 (1049)
199 3qml_C Protein SLS1, nucleotid 70.8 58 0.002 32.5 13.1 147 485-637 22-188 (315)
200 1mhq_A ADP-ribosylation factor 70.8 11 0.00039 33.4 7.4 74 358-431 35-115 (148)
201 1x5b_A Signal transducing adap 70.7 10 0.00035 34.3 7.2 73 359-431 50-124 (163)
202 1lsh_A Lipovitellin (LV-1N, LV 67.0 2E+02 0.007 33.9 19.7 198 361-592 311-539 (1056)
203 1juq_A ADP-ribosylation factor 65.4 13 0.00045 33.9 6.8 73 359-431 48-127 (171)
204 3ldz_A STAM-1, signal transduc 65.0 14 0.00048 32.4 6.7 74 358-431 39-113 (140)
205 3l9t_A Putative uncharacterize 64.8 53 0.0018 31.5 11.1 137 451-607 78-218 (240)
206 2bay_A PRE-mRNA splicing facto 64.6 2.7 9.3E-05 31.2 1.7 43 307-350 3-48 (61)
207 3qml_C Protein SLS1, nucleotid 63.5 46 0.0016 33.2 10.7 145 446-595 24-188 (315)
208 3a6p_A Exportin-5; exportin-5, 61.4 65 0.0022 38.8 13.9 218 363-598 13-278 (1204)
209 1vdy_A Hypothetical protein (R 61.1 11 0.00038 33.1 5.2 75 567-641 49-133 (140)
210 3mjh_B Early endosome antigen 60.3 1.8 6.3E-05 28.1 0.0 19 271-289 4-22 (34)
211 1lsh_A Lipovitellin (LV-1N, LV 60.0 1.1E+02 0.0037 36.3 15.2 170 407-599 315-510 (1056)
212 3l9t_A Putative uncharacterize 57.3 1.1E+02 0.0039 29.1 12.0 142 362-524 71-218 (240)
213 1weo_A Cellulose synthase, cat 56.4 19 0.00066 28.7 5.2 48 272-319 16-70 (93)
214 2kkx_A Uncharacterized protein 56.3 7.4 0.00025 31.7 2.9 52 269-321 24-81 (102)
215 3ldz_A STAM-1, signal transduc 55.6 20 0.00068 31.4 6.0 68 528-595 44-113 (140)
216 2jvx_A NF-kappa-B essential mo 55.3 3.6 0.00012 25.5 0.7 19 270-288 1-19 (28)
217 3g2s_A C-terminal fragment of 54.4 31 0.0011 30.5 7.1 74 358-431 45-125 (149)
218 1x5b_A Signal transducing adap 54.4 26 0.0009 31.5 6.7 72 567-638 52-125 (163)
219 2yu4_A E3 SUMO-protein ligase 53.5 7 0.00024 31.7 2.5 42 307-348 7-56 (94)
220 2f42_A STIP1 homology and U-bo 52.4 6.7 0.00023 36.1 2.4 44 307-350 106-151 (179)
221 2kre_A Ubiquitin conjugation f 49.4 9.8 0.00033 31.3 2.7 34 271-306 62-95 (100)
222 3ibv_A Exportin-T; karyopherin 48.5 3.8E+02 0.013 31.2 18.5 208 325-556 21-261 (980)
223 3gae_A Protein DOA1; UFD3, CDC 48.4 34 0.0012 33.2 7.0 129 378-516 71-219 (253)
224 3gae_A Protein DOA1; UFD3, CDC 46.7 16 0.00053 35.7 4.2 131 496-632 101-252 (253)
225 1juq_A ADP-ribosylation factor 46.7 28 0.00095 31.6 5.6 72 567-638 50-128 (171)
226 3g2s_A C-terminal fragment of 45.4 40 0.0014 29.9 6.3 69 527-595 49-125 (149)
227 1mhq_A ADP-ribosylation factor 43.8 30 0.001 30.6 5.3 72 567-638 38-116 (148)
228 6rxn_A Rubredoxin; electron tr 42.0 7.9 0.00027 27.0 0.9 13 268-280 26-38 (46)
229 1elk_A Target of MYB1; superhe 41.8 62 0.0021 28.8 7.1 73 359-431 51-129 (157)
230 3zyq_A Hepatocyte growth facto 41.4 33 0.0011 32.7 5.5 73 359-431 43-117 (226)
231 1dvp_A HRS, hepatocyte growth 40.5 44 0.0015 31.5 6.3 73 359-431 40-114 (220)
232 3a6p_A Exportin-5; exportin-5, 39.8 1.8E+02 0.0063 34.8 13.0 120 416-555 26-162 (1204)
233 3zyq_A Hepatocyte growth facto 39.0 45 0.0015 31.7 6.1 69 527-595 46-117 (226)
234 3pst_A Protein DOA1; protein d 38.9 1E+02 0.0036 32.1 9.2 128 378-515 243-390 (425)
235 2c2l_A CHIP, carboxy terminus 38.8 15 0.0005 35.9 2.7 44 307-350 208-253 (281)
236 1wgm_A Ubiquitin conjugation f 38.1 17 0.00057 29.7 2.4 33 272-306 57-89 (98)
237 3gjx_A Exportin-1; transport, 37.5 5.7E+02 0.02 30.1 17.0 213 405-638 30-275 (1073)
238 3a8y_C BAG family molecular ch 36.8 40 0.0014 29.4 4.6 99 7-107 14-119 (142)
239 2ko5_A Ring finger protein Z; 36.5 12 0.0004 30.3 1.1 49 271-321 27-75 (99)
240 1e8j_A Rubredoxin; iron-sulfur 36.2 13 0.00045 26.6 1.3 14 267-280 31-44 (52)
241 4rxn_A Rubredoxin; electron tr 35.7 11 0.00038 27.2 0.9 13 268-280 32-44 (54)
242 2kw6_A Cyclin-dependent kinase 35.0 14 0.00048 27.4 1.3 39 63-104 15-56 (65)
243 1dvp_A HRS, hepatocyte growth 33.2 62 0.0021 30.5 6.0 69 527-595 43-114 (220)
244 2cs3_A Protein C14ORF4, MY039 32.6 35 0.0012 26.6 3.2 44 270-313 13-64 (93)
245 3pst_A Protein DOA1; protein d 31.2 1.9E+02 0.0065 30.2 9.6 131 496-632 273-424 (425)
246 1m3v_A FLIN4, fusion of the LI 31.2 27 0.00094 29.5 2.8 51 270-321 30-83 (122)
247 2kn9_A Rubredoxin; metalloprot 31.1 17 0.00058 28.6 1.2 15 267-281 55-69 (81)
248 1yk4_A Rubredoxin, RD; electro 30.8 15 0.00052 26.3 0.9 13 268-280 31-43 (52)
249 3l3f_X Protein DOA1, DOA1/UFD3 30.1 85 0.0029 32.1 6.7 127 378-514 180-326 (362)
250 2v3b_B Rubredoxin 2, rubredoxi 30.0 15 0.00053 26.6 0.8 13 268-280 32-44 (55)
251 3pwf_A Rubrerythrin; non heme 30.0 1.2E+02 0.0041 27.3 7.1 30 269-318 135-164 (170)
252 2k5c_A Uncharacterized protein 28.4 26 0.00088 27.3 1.8 54 273-326 9-70 (95)
253 2o35_A Hypothetical protein DU 27.9 23 0.00078 28.8 1.5 13 293-305 42-54 (105)
254 2kr4_A Ubiquitin conjugation f 27.7 22 0.00075 28.0 1.4 32 272-305 48-79 (85)
255 3fyb_A Protein of unknown func 27.5 24 0.0008 28.7 1.5 13 293-305 41-53 (104)
256 1dx8_A Rubredoxin; electron tr 27.4 18 0.00063 27.6 0.9 14 268-281 36-49 (70)
257 3l3f_X Protein DOA1, DOA1/UFD3 25.6 1E+02 0.0034 31.5 6.3 130 496-631 210-360 (362)
258 1t1h_A Gspef-atpub14, armadill 25.4 41 0.0014 25.5 2.6 33 272-306 43-75 (78)
259 2xjy_A Rhombotin-2; oncoprotei 25.2 45 0.0015 28.3 3.2 49 270-319 27-78 (131)
260 3o2t_A Symplekin; heat repeat, 24.9 1.9E+02 0.0065 29.8 8.3 158 443-604 62-264 (386)
261 1s24_A Rubredoxin 2; electron 24.5 23 0.00077 28.3 0.9 13 268-280 64-76 (87)
262 2xqn_T Testin, TESS; metal-bin 23.8 37 0.0013 28.6 2.3 47 270-319 28-75 (126)
263 2m1l_A Cyclin-dependent kinase 23.5 32 0.0011 25.8 1.5 22 83-104 39-60 (69)
264 3gs3_A Symplekin, LD45768P; he 23.1 5E+02 0.017 24.8 15.4 107 444-554 53-172 (257)
265 1elk_A Target of MYB1; superhe 22.4 1.4E+02 0.0049 26.3 6.0 72 567-638 53-130 (157)
266 1rut_X Flinc4, fusion protein 22.4 26 0.00089 32.2 1.1 49 270-319 30-81 (188)
267 3vld_A DNA mismatch repair pro 21.9 6.9E+02 0.023 26.5 11.8 102 486-592 117-221 (500)
268 1sz9_A PCF11 protein; RNA poly 20.0 2.7E+02 0.0091 24.2 7.1 70 567-636 43-112 (144)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.7e-30 Score=270.60 Aligned_cols=263 Identities=18% Similarity=0.227 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccCh-hhHHHHH-h
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDE-TNKRHIA-R 442 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~-~~k~~i~-~ 442 (643)
..+..|++.|.+++. ++++|..+++.|++++|+.+|.. .++.+|.+|+++|.||+.++ .+|..+. .
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456689999999995 58999999999999999999952 24678999999999999765 4888886 4
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCc
Q 006494 443 EGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSN 518 (643)
Q Consensus 443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en 518 (643)
.|+|+.|+.+|++++.+++++|+++|.+|+.. +++|..|.+.|+|++|+.+| ++++..+++.|+.+|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999974 46899999999999999975 66788999999999999999 6688
Q ss_pred hHHHH-hcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494 519 KSRAI-KAGIIPSLLKLLEDKAL----GMVDEALSILQLLAS----HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATS 589 (643)
Q Consensus 519 ~~~iv-~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 589 (643)
+..++ ..|+++.|+++|.++++ .+++.|+++|.||+. +++++..+.+.|+++.|+.+|++++...+++|+.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 69999999999987544 489999999999996 7899999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
+|++|+.++++..+.+.+.|++++|+.++.++++++++.|...|++|...
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988899999999999999999999999999999999999999864
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.5e-29 Score=276.10 Aligned_cols=278 Identities=22% Similarity=0.283 Sum_probs=243.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHI 440 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i 440 (643)
.++.|+..|++++++++..|+..|++++.+++.++..+.+.|+||.|+.+|+++++++|..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 478999999999999999999999999988888898999999999999999999999999999999999976 8999999
Q ss_pred HhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc--------cC--------ChhhHH
Q 006494 441 AREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR--------YG--------SIRGKK 503 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------s~--------~~~~k~ 503 (643)
++.|++++|+++|+ +++++++++|+++|++|+..+++|..+.+ |++++|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 22 345666
Q ss_pred HHHHHHHHhhcCCCchHHHHhc-CcHHHHHHHhcc------CChhhHHHHHHHHHHHhCC--------------------
Q 006494 504 DAATALFNLSINQSNKSRAIKA-GIIPSLLKLLED------KALGMVDEALSILQLLASH-------------------- 556 (643)
Q Consensus 504 ~A~~aL~nLs~~~en~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~-------------------- 556 (643)
+|+++|.|||.+++++..+++. |++++|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998889999997 999999999975 3567899999999999742
Q ss_pred -------------------------------hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCHHH---
Q 006494 557 -------------------------------PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLNNSYF--- 601 (643)
Q Consensus 557 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~--- 601 (643)
+.+.+.+...|+++.|+.+|.++ ++..++.|+++|.+||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 12334455668899999999764 6899999999999999875432
Q ss_pred H-HHH-HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494 602 I-LAA-LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 602 ~-~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~ 640 (643)
. +.+ .+.|++|.|+.++.++++++++.|.++|++|....
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 1 333 36899999999999999999999999999998643
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.7e-28 Score=272.81 Aligned_cols=279 Identities=18% Similarity=0.245 Sum_probs=241.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc--ChhhHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKR 438 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~k~ 438 (643)
..++.||+.|.+++++++..|+..|++++..++.+|..+++.|+|+.|+.+|++++.++|+.|+++|.||+. +++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 469999999999999999999999999999899999999999999999999999999999999999999997 489999
Q ss_pred HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc------------------cCCh
Q 006494 439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR------------------YGSI 499 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------s~~~ 499 (643)
.|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++++|+.++. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 67999999872 1246
Q ss_pred hhHHHHHHHHHHhhcCCCc-hHHHHh-cCcHHHHHHHhcc------CChhhHHHHHHHHHHHhCCh--------------
Q 006494 500 RGKKDAATALFNLSINQSN-KSRAIK-AGIIPSLLKLLED------KALGMVDEALSILQLLASHP-------------- 557 (643)
Q Consensus 500 ~~k~~A~~aL~nLs~~~en-~~~iv~-~G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~~-------------- 557 (643)
.++++|+.+|+||+.+.++ |..+++ .|+++.|+.+|.+ .+...++.|+++|.||+..-
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999999997754 888888 5667899999974 35578999999999999762
Q ss_pred ------------hhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHH----HHHHHHHcCcHHHHHHHHhh
Q 006494 558 ------------EGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNSY----FILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 558 ------------~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~----~~~~~~~~g~i~~L~~ll~~ 620 (643)
.+.+.+...++++.|+.+|.. .++.++++|+.+|.+||.++.. ....+.+.|+++.|+.++.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 122233344667889999964 6799999999999999987632 22334457899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcc
Q 006494 621 GTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 621 g~~~~k~~A~~lL~~l~~~~ 640 (643)
+++++++.|.++|++|+...
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCh
Confidence 99999999999999998753
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=270.41 Aligned_cols=262 Identities=18% Similarity=0.227 Sum_probs=236.3
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccChh-hHHHHH-hcC
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDET-NKRHIA-REG 444 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~-~k~~i~-~~g 444 (643)
+..|++.|.+++ .++++|..+.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 458999999998 569999999999999999999952 246789999999999997654 777776 456
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCchH
Q 006494 445 AIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSNKS 520 (643)
Q Consensus 445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en~~ 520 (643)
+|+.|+.+|++++.+++.+|+++|.+|+.. +++|..|.+.|+|++|+.+| .+++..+++.|+.+|+||+. +++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 699999999999999999999999999974 46899999999999999975 66788999999999999999 778999
Q ss_pred HHH-hcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494 521 RAI-KAGIIPSLLKLLEDKAL----GMVDEALSILQLLAS----HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591 (643)
Q Consensus 521 ~iv-~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 591 (643)
.++ ..|+++.|+++|.+... .+++.|+++|.||+. +++++..+.+.|+++.|+.+|++++...+++|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 998 69999999999987544 389999999999995 789999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494 592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~ 640 (643)
++|+.++++....+.+.|++++|+.++.++++++++.|...|++|....
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999888999999999999999999999999999999999999998654
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=5e-28 Score=265.75 Aligned_cols=282 Identities=20% Similarity=0.258 Sum_probs=247.1
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
..+.++.|++.|++++++++..|+..|++|+..++++|..+++.|+|+.|+.+|+ +++.++++.|+++|.||+.++++|
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 5578999999999999999999999999999888999999999999999999999 889999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHc--------cC--------CHHHHHHHHHHHHHccccccccchhhcc-CChHHHHHHcccC---
Q 006494 438 RHIAREGAIPAIIEILQ--------NG--------TNEARENSAAALFSLSMLDENRVMVGNL-NGIPPLVNLLRYG--- 497 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~s~--- 497 (643)
..+++ |++++|+.+|. ++ +..+..+|+++|+||+..++++..+.+. |++++|+.+|+++
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 99999 99999999993 33 3445569999999999888899999987 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 006494 498 -------------------------------------------------------------------------------- 497 (643)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (643)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------ChhhHHHHHHHHHHhhcCCCch-----HHHH-hcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 498 ----------------SIRGKKDAATALFNLSINQSNK-----SRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 498 ----------------~~~~k~~A~~aL~nLs~~~en~-----~~iv-~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
++..++.|+++|.||+...... ..++ ++|++|.|+++|.+++..++..|+++|.||+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 1345566789999998755431 2233 58999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhcCC------hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHH
Q 006494 556 HPEGRNEIGRLSFIETLVEIIKNGT------PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRK 628 (643)
Q Consensus 556 ~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~ 628 (643)
++..+..|. .|+++.|+++|.+++ ++....++.+|.++..++++....+.+.|+++.|+.++.++ +++++++
T Consensus 361 ~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 361 HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence 998887776 479999999998864 35677899999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhhccCC
Q 006494 629 ANSLLQHMSKREHI 642 (643)
Q Consensus 629 A~~lL~~l~~~~e~ 642 (643)
|..+|.+++.+.++
T Consensus 440 A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 440 ARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHTTSSSTTC
T ss_pred HHHHHHHHHcchhh
Confidence 99999999987765
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=3.6e-27 Score=270.48 Aligned_cols=280 Identities=16% Similarity=0.135 Sum_probs=251.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-----------------------------hhH---HHHHhhCChH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-----------------------------DNR---ILIANNGGIR 406 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~~~g~i~ 406 (643)
+.+.++.|++.|++.+..+++.|++.|.+++...+ ..+ ..++++|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 46899999999999999999999999999997442 123 5678899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh---c
Q 006494 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG---N 483 (643)
Q Consensus 407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~---~ 483 (643)
.|+.+|+++++.+|+.|+++|.||+.+++++..+++.|++++|+.+|++++...+.+|+++|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986544333222 1
Q ss_pred cCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 006494 484 LNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRN 561 (643)
Q Consensus 484 ~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~ 561 (643)
.|++++|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.+|.+++..++..|+++|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999876 4455679999999999864 679999999999999999999889999999999999999999988
Q ss_pred HHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 562 EIGR-LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ-YGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 562 ~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.++. .|+++.|+.++.+.+...|..|+++|.+|+.+++..++.+.+ .|++++|+.++.+++...++.|.+.|.++..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8886 689999999999999999999999999999987888888888 8999999999999999999999999999865
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=6.2e-27 Score=260.23 Aligned_cols=281 Identities=21% Similarity=0.195 Sum_probs=237.0
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-ChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKE-NPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~ 436 (643)
..+.|+.||+.|.+++.+++..|+..|++|+.. ++++|..|++.|+|+.|+.+|++ .+.+++++|+.+|+||+.++++
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 457899999999999999999999999999975 69999999999999999999997 5789999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHc------------------cCCHHHHHHHHHHHHHcccccc-ccchhhcc-CChHHHHHHccc
Q 006494 437 KRHIAREGAIPAIIEILQ------------------NGTNEARENSAAALFSLSMLDE-NRVMVGNL-NGIPPLVNLLRY 496 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~-g~i~~Lv~lL~s 496 (643)
|..|++ +++++|+++|. ..+.+++.+|+++|+||+..++ +|..|.+. |+++.|+.++++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999995 57999999872 1257899999999999998764 47777663 445566665542
Q ss_pred --------------------------------------------------------------------------CChhhH
Q 006494 497 --------------------------------------------------------------------------GSIRGK 502 (643)
Q Consensus 497 --------------------------------------------------------------------------~~~~~k 502 (643)
.+..++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 234445
Q ss_pred HHHHHHHHHhhcCCC-----chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh
Q 006494 503 KDAATALFNLSINQS-----NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK 577 (643)
Q Consensus 503 ~~A~~aL~nLs~~~e-----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 577 (643)
+.|+.||.|||.... ++..+.+.|+++.|+++|.+++..+++.|+++|.||+.++..+..| ..|+++.||.+|.
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence 566666666665331 2223344789999999999999999999999999999999888877 6799999999998
Q ss_pred cC--------ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhhccC
Q 006494 578 NG--------TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSKREH 641 (643)
Q Consensus 578 ~~--------s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~~~e 641 (643)
++ ++.....|+.+|.+|+..++...+.+.+.|+++.|+.++.++ .+++++.|..+|.+|+.+.+
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 76 467788999999999999999999999999999999999987 89999999999999987543
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=252.20 Aligned_cols=281 Identities=19% Similarity=0.151 Sum_probs=243.7
Q ss_pred HhHHHHHHHHHhhcC------------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCCh----------HHHHHHhcCC
Q 006494 358 ALIEEICSLIQNLSS------------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGI----------RPLVQLLSYP 415 (643)
Q Consensus 358 ~~~~~i~~Lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i----------~~Lv~lL~~~ 415 (643)
...+.+|.||+.|.. ++++.+.+|+++|.+++...++......+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 356889999999985 337999999999999999888888887777777 6677777764
Q ss_pred C--HH-----HH-------HHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-----------CCHHHHHHHHHHHHH
Q 006494 416 D--SK-----IQ-------EHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-----------GTNEARENSAAALFS 470 (643)
Q Consensus 416 ~--~~-----~~-------~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~Aa~~L~~ 470 (643)
+ .+ ++ .+|+++|.|++.++++|..|.+.|++++|+.+|.. .++..+.+|+++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 2 12 33 38999999999999999999999999999999952 236789999999999
Q ss_pred cccccc-ccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcC--CCchHHHHhcCcHHHHHHHhc-cCChhhHHH
Q 006494 471 LSMLDE-NRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSIN--QSNKSRAIKAGIIPSLLKLLE-DKALGMVDE 545 (643)
Q Consensus 471 Ls~~~~-~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~--~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~ 545 (643)
|+..++ ++..+.. .|+|+.|+.+|++++..++..|+++|.||+.. .+++..+++.|++++|+++|. +.+..+++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998776 6666754 56799999999999999999999999999984 468899999999999999864 467789999
Q ss_pred HHHHHHHHhC-ChhhHHHHH-hcCcHHHHHHHHhcCCh----HHHHHHHHHHHHhcc---CCHHHHHHHHHcCcHHHHHH
Q 006494 546 ALSILQLLAS-HPEGRNEIG-RLSFIETLVEIIKNGTP----KNKECATSVLLELGL---NNSYFILAALQYGVYEHLVE 616 (643)
Q Consensus 546 Al~iL~nLa~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~ke~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ 616 (643)
|+.+|+||+. +++++..|+ ..|+++.|+.+|.++++ ..++.|+++|.+|+. .+++..+.+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999999 778888998 68999999999988765 489999999999997 68888888999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHHhhh
Q 006494 617 ITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 617 ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++.+++..+++.|.++|++|..
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999973
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=5.9e-27 Score=247.47 Aligned_cols=243 Identities=20% Similarity=0.250 Sum_probs=218.9
Q ss_pred hHHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHH
Q 006494 359 LIEEICSLIQNLSS-----------SQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTA 426 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~ 426 (643)
+.+.++.|+..|.+ .+++.+..|++.|.+|+..++.+|..+.. .|+||.|+.+|++++.++++.|+.+
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 150 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence 45789999999842 24678999999999999888888888864 5679999999999999999999999
Q ss_pred HHhcccC--hhhHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHccc-cccccchhh-ccCChHHHHHHcccCCh--
Q 006494 427 LLNLSLD--ETNKRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSM-LDENRVMVG-NLNGIPPLVNLLRYGSI-- 499 (643)
Q Consensus 427 L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~s~~~-- 499 (643)
|.||+.. +.+|..+++.|++++|+++| ++++.++++.|+++|++|+. .+++|..|+ ..|+++.|+.+|.+++.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 9999974 67899999999999999975 56789999999999999998 667898998 68999999999987754
Q ss_pred --hhHHHHHHHHHHhhc----CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHH
Q 006494 500 --RGKKDAATALFNLSI----NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETL 572 (643)
Q Consensus 500 --~~k~~A~~aL~nLs~----~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~L 572 (643)
.+++.|+.+|.||+. +++++..+++.|+++.|+++|.+++..+++.|+++|.||+. +++.+..+++.|+++.|
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 489999999999996 78889999999999999999999888999999999999995 68999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494 573 VEIIKNGTPKNKECATSVLLELGLNNSYF 601 (643)
Q Consensus 573 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 601 (643)
+++|+++++..++.|+.+|.+|+.+.+..
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999987653
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=8e-26 Score=251.76 Aligned_cols=280 Identities=19% Similarity=0.226 Sum_probs=252.6
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494 359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 436 (643)
..|.+|.||+.|++ +++++|..|++.|.+++..+++++..+++.|+||.|+.+|++++.++++.|+++|.||+.+ +..
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 45789999999974 5689999999999999999999999999999999999999999999999999999999976 577
Q ss_pred HHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494 437 KRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF 510 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~ 510 (643)
+..+.+.|++++|+.+|...+ ...+.++++++.+++........+.. .|+++.|+.++.+++..++..|+++|.
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888889999999999998653 45678899999999987665554444 789999999999999999999999999
Q ss_pred HhhcCCCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006494 511 NLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECAT 588 (643)
Q Consensus 511 nLs~~~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~ 588 (643)
+|+....++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +..+..+.+.|+++.|+.+|.+.++..++.|+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 999876654 4566799999999999999999999999999999886 56778888999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 589 SVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 589 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999864
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=2.1e-25 Score=249.46 Aligned_cols=280 Identities=18% Similarity=0.214 Sum_probs=253.7
Q ss_pred hHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494 359 LIEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 436 (643)
..+.++.||+.|. +.+++++..|++.|.+++.+++.++..+++.|+|+.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 5579999999997 45689999999999999999999999999999999999999999999999999999999975 678
Q ss_pred HHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494 437 KRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF 510 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~ 510 (643)
+..+.+.|++++|+.+|..++ .....+++++|.+++........+.. .|+++.|+.++.++++.++.+|+++|.
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 889999999999999998643 45678899999999987665544443 789999999999999999999999999
Q ss_pred HhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006494 511 NLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECAT 588 (643)
Q Consensus 511 nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~ 588 (643)
+|+...++ ...+++.|+++.|+++|.+++..++..|+.+|.|++.+ +..+..+.+.|+++.|+.+|.+.++..+..|+
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 99987665 45566899999999999999999999999999999986 66788888999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 589 SVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 589 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999864
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=8.4e-26 Score=259.13 Aligned_cols=281 Identities=15% Similarity=0.145 Sum_probs=251.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
+.+.++.|++.|+++++.++..|++.|.+++ .++++|..++++|++++|+.+|.+++...++.|+++|.||+.+.+...
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 4478999999999999999999999999999 578899999999999999999999999999999999999986433322
Q ss_pred HH---HhcCChHHHHHHHccC-CHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 439 HI---AREGAIPAIIEILQNG-TNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 439 ~i---~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
.+ ...|++++|+.+|.++ +...+..|+.+|.||+.. ++++..|.+.|+++.|+.++.++++.+++.|+.+|.||+
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 1246999999999866 455567899999999976 468889999999999999999999999999999999999
Q ss_pred cCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHH
Q 006494 514 INQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGR-LSFIETLVEIIKNGTPKNKECATSV 590 (643)
Q Consensus 514 ~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~ 590 (643)
.+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++.....+++ .|+++.|+.++.+++...+..|+++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999888886 7999999999999888999999999999999 6788888888 8999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHcCcHHHHHHHHhhC---CHHHHHHHHHHHHHhhhcc
Q 006494 591 LLELGLNNSYFILAALQYGVYEHLVEITRCG---TNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g---~~~~k~~A~~lL~~l~~~~ 640 (643)
|.+++.++.+....+.+.|++++|+.++... +.++.+.|...|.++-++.
T Consensus 732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9999998888889999999999999998644 7899999999999987654
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=3.9e-25 Score=246.21 Aligned_cols=277 Identities=18% Similarity=0.198 Sum_probs=245.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhh-hhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhccc-ChhhHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLS-KENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSL-DETNKR 438 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~-~~~~k~ 438 (643)
.++.+|+.++|++.+.|..|+..+|.+. ++.......+++.|+||.|+.+|++. ++.+|..|+++|.|++. +++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5889999999999999999999999754 43333467788999999999999754 58999999999999975 567888
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCC-----hhhHHHHHHHHHHh
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGS-----IRGKKDAATALFNL 512 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~-----~~~k~~A~~aL~nL 512 (643)
.+++.|++|.|+.+|++++.++++.|+++|.+|+.+. +.+..+.+.|++++|+.++.+.+ ....+.++++|.|+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 57888899999999999998654 34678899999999
Q ss_pred hcCCCchHHH-HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494 513 SINQSNKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATSV 590 (643)
Q Consensus 513 s~~~en~~~i-v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~ 590 (643)
+.+......+ ...|++|.|+++|.+.+..++..|+++|.+|+.++ +....+.+.|+++.|+.+|.+.++..+..|+.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9977665444 34789999999999999999999999999999975 456677788999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 591 LLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999975
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3.2e-24 Score=239.64 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=256.5
Q ss_pred hHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494 359 LIEEICSLIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 436 (643)
..+.++.|++.|.+.+ +.++..|++.|.+++..+++++..+.+.|+++.|+.+|.+++..+++.|+++|.||+.+ +.+
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 3467999999999876 99999999999999988899999999999999999999999999999999999999965 567
Q ss_pred HHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 437 KRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
+..+...|++++|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.+++..++..|+++|.+|+..
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999 56689999999999999998765555566689999999999999999999999999999987
Q ss_pred CCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006494 516 QSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLL 592 (643)
Q Consensus 516 ~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~ 592 (643)
.+++ ..+++.|+++.|+.+|.+++..++..|+.+|.||+.. +.....+.+.|+++.|+.+|.++ ++..+..|+++|.
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6654 5777899999999999998899999999999999995 66788888899999999999998 8999999999999
Q ss_pred HhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 593 ELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 593 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
+|+.+++.....+.+.|+++.|+.++.++++.+++.|..+|.++...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99998888888888999999999999999999999999999998754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.1e-24 Score=218.13 Aligned_cols=238 Identities=22% Similarity=0.301 Sum_probs=222.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHI 440 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i 440 (643)
.++.|++.|.+++++++..|+..|.+++..+++++..+.+.|+++.|+.+|++++.+++..|+.+|.|++.+ +.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 689999999999999999999999999988888999999999999999999999999999999999999987 8889999
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHcc-ccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-c
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-N 518 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n 518 (643)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+++++++.++..|+.+|.||+...+ +
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 566788899999999999999999999999999999999998544 5
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+..+++.|+++.|+++|.++++.++..|+.+|.+|+.. +..+..+.+.|+++.|++++.++++..++.|+.+|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 67888999999999999998899999999999999984 77888899999999999999999999999999999999976
Q ss_pred CH
Q 006494 598 NS 599 (643)
Q Consensus 598 ~~ 599 (643)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 53
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.8e-24 Score=216.55 Aligned_cols=238 Identities=23% Similarity=0.279 Sum_probs=222.7
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccch
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVM 480 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~ 480 (643)
|+++.|+.+|.+++++++..|+.+|.+++.++ +++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999998655 5888999999999999999999999999999999999987 678999
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhh-cCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE 558 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs-~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~ 558 (643)
+.+.|+++.|+.+++++++.++..|+.+|.||+ .+++++..+++.|+++.|+++|.++++.++..|+++|.+|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5677899999999999999999998999999999999999986 56
Q ss_pred hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.+..+.+.|+++.|+.++.+.++..+..|+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|..+|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 66888889999999999999999999999999999999889888889999999999999999999999999999999987
Q ss_pred cc
Q 006494 639 RE 640 (643)
Q Consensus 639 ~~ 640 (643)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=6.5e-24 Score=237.12 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=252.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcCCC-HHHHHHHHHHHHhcccC-hhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLD-ETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~-~~~k 437 (643)
..++.|++.|.+++++.+..|+..|+.++.... .....+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999865544 66788889999999999999886 99999999999999975 7888
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcC
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~ 515 (643)
..+++.|+++.|+.+|++++..++..|+++|.+|+... .++..+...|++++|+.+| .+.+..++..|+++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88899999999999999999999999999999998664 4788888899999999999 566889999999999999998
Q ss_pred CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG-RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
.++.......|+++.|+.+|.+.+..++..|+++|.+|+..... ...+.+.|+++.|+.+|.+.++..+..|+.+|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 76666667799999999999999999999999999999988544 46777889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhh
Q 006494 595 GLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~ 638 (643)
+.+++.....+.+.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988888889999999999999999 99999999999999975
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=9.3e-25 Score=219.46 Aligned_cols=236 Identities=23% Similarity=0.316 Sum_probs=217.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHI 440 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i 440 (643)
..+.++..|.+++++++..|+..|+++...++.++..+.+.|+++.|+.+|.+++++++..|+.+|.|++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58889999999999999999999977665677888899999999999999999999999999999999997 68899999
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-chhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC-Cc
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SN 518 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-en 518 (643)
.+.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+.+.|+++.|+.+|.+++..++..|+.+|.||+... ++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999988888 88889999999999999999999999999999999854 56
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+..+++.|+++.|+++|.++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.++.++++..++.|+.+|.+|+.+
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 77888999999999999998999999999999999964 77888899999999999999999999999999999999863
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=3.5e-24 Score=239.65 Aligned_cols=280 Identities=19% Similarity=0.219 Sum_probs=250.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC-----HHHHHHHHHHHHhcccC
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD-----SKIQEHTVTALLNLSLD 433 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~ 433 (643)
..+.++.|+..|.+++.+++..|++.|.+++..++.+|..+.+.|++++|+.+|...+ ...+..++.+|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999989999999999999999999998764 34678899999999876
Q ss_pred hhhHHH-HHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494 434 ETNKRH-IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN 511 (643)
Q Consensus 434 ~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n 511 (643)
...... ....|+++.|+.+|.+++++++..|+++|.+|+..+. ....+...|+++.|+.+|.+.+..++..|+.+|.|
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 644433 3356789999999999999999999999999997665 45566779999999999999999999999999999
Q ss_pred hhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494 512 LSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATS 589 (643)
Q Consensus 512 Ls~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 589 (643)
|+.. ++++..+++.|+++.|+.+|.+++..++..|+++|.||+.+ +..+..+.+.|+++.|+.++.+++...+..|++
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 9874 45678888999999999999999999999999999999986 677888889999999999999999999999999
Q ss_pred HHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 590 VLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 590 ~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+|.+++.+ +.+....+.+.|++++|+.++.+.++++...+...|.++.+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999874 56777888899999999999999999999999999998864
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.5e-23 Score=232.65 Aligned_cols=281 Identities=14% Similarity=0.127 Sum_probs=255.9
Q ss_pred hHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494 359 LIEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 436 (643)
..+.++.|++.|.+. ++.++..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 346799999999987 899999999999999988888999999999999999999999999999999999999976 578
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
+..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999765 4555566689999999999999999999999999999975
Q ss_pred C-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 516 Q-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 516 ~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
. +....+++.|+++.|+.+|.+.+..++..|+.+|.+|+.. +.....+.+.|+++.|+.+|.++++..+..|+.+|.+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 4577788899999999999988889999999999999986 5667778888999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
++.+++.....+.+.|+++.|+.++.++++.++..|.++|.+|...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9998888888888899999999999999999999999999999753
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=4.1e-24 Score=214.77 Aligned_cols=236 Identities=20% Similarity=0.244 Sum_probs=219.5
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhc-ccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccch
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVM 480 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~ 480 (643)
...+.++..|.++++++|..|+.+|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678899999999999999999999764 4567788889999999999999999999999999999999997 5678999
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE 558 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~ 558 (643)
+.+.|+++.|+.+|+++++.++..|+.+|.||+...+++ ..+++.|+++.|+++|.+++..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999888 8899999999999999998999999999999999986 67
Q ss_pred hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.+..+.+.|+++.|+.++.++++..++.|+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|..+|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77888889999999999999999999999999999999999888889999999999999999999999999999999864
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=1.3e-22 Score=221.02 Aligned_cols=277 Identities=17% Similarity=0.182 Sum_probs=250.0
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHH
Q 006494 361 EEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKR 438 (643)
Q Consensus 361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~ 438 (643)
+.++.|++.|.+. ++.++..|++.|.+++..++++...+.+.|+++.|+.+|+++++.+++.|+.+|.|++.+ +.++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 899999999999999987888888888999999999999999999999999999999976 46788
Q ss_pred HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
.+.+.|+++.|+.+|++ .+..++..|+++|.+|+... ..+..+. .++++.|+.++.+++..++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999998654 2333333 78999999999999999999999999999985
Q ss_pred C-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 516 Q-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 516 ~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
. +++..++..|+++.|+.+|.+++..++..|+.+|.+|+.+ +..+..+.+.|+++.|+.++.+.++..+..|+.+|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 5677788899999999999988899999999999999987 4556677888999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++.+++.....+.+.|+++.|+.++.++++++++.|..+|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888888889999999999999999999999999999864
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=7.7e-23 Score=228.63 Aligned_cols=278 Identities=17% Similarity=0.208 Sum_probs=252.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-ChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccC-hhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKE-NPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLD-ETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~~k 437 (643)
..++.+++.|.+++++++..|+..|+.+... +..++..+.+.|+++.|+.+|.++ ++.++..|+++|.+++.+ ++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3589999999999999999999999988643 245567788899999999999997 899999999999999975 5677
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
..++..|+++.|+.+|++++++++..|+++|.+|+.. +.++..+...|+++.|+.++.+.+..++..|+++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 7888999999999999999999999999999999976 457888888999999999999989999999999999999876
Q ss_pred -CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 517 -SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 517 -en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
+........|+++.|+.+|.+.+..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.++..+..|+.+|.++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 6666777799999999999988899999999999999987 56778888889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 595 GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99988888888889999999999999999999999999999975
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=1.1e-22 Score=226.55 Aligned_cols=276 Identities=22% Similarity=0.281 Sum_probs=246.7
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH
Q 006494 360 IEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k 437 (643)
.+.++.|++.|.++ +++++..|+..|++++. +++++..+.+.|+++.|+.+|+++++.++..|+.+|.|++.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999754 89999999999999995 567999999999999999999999999999999999999976 5667
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCCh-hhHHHHHHHHHHhhcC
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSI-RGKKDAATALFNLSIN 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~-~~k~~A~~aL~nLs~~ 515 (643)
..+.+.|+++.|+.+|++++.+.+..++.+|.+|+.. ++++..+.+.|+++.|+.++++++. ..+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999999999999999874 5788899999999999999988754 4556778899999999
Q ss_pred CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
++++..+++.|+++.|+.++.+++..++..++++|.+|+....... ...++++.|++++.+.++..++.|+.+|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888999999999999998753322 22478999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhh
Q 006494 596 LNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 596 ~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~ 638 (643)
.++++.+..+.+.|+++.|+.++.+. ++.++..|..+|.+|..
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99888888899999999999999763 37999999999999865
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=3.1e-22 Score=217.89 Aligned_cols=278 Identities=16% Similarity=0.130 Sum_probs=247.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCh--hh
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDE--TN 436 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~--~~ 436 (643)
.+.++.|++.|.+++++++..|+..|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+.+|.|++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3689999999999999999999999999998888899999999999999999995 68999999999999998653 33
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~ 515 (643)
+..+. .++++.|+.++++++..++..++++|.+|+... +.+..+...|+++.|+.++.+++..++..|+.+|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 33333 789999999999999999999999999998754 4666777889999999999999999999999999999986
Q ss_pred CCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 516 QSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 516 ~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
.+. ...+++.|+++.|+++|.++++.++..|+++|.+++. +++....+.+.|+++.|+.+|.++++..|..|+.+|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 554 5567789999999999998888999999999999997 46777788888999999999999999999999999999
Q ss_pred hccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 594 LGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 594 L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
++.+ +++....+.+.|+++.|+.++.++++++++.|...|.++..
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9976 66777777789999999999999999999999999998865
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=1.1e-22 Score=226.45 Aligned_cols=277 Identities=17% Similarity=0.165 Sum_probs=246.5
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~ 436 (643)
..+.++.|+..|+++++.++..|+..|.+++. +..++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 35689999999999999999999999999995 4567766664 58999999999754 899999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI- 514 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~- 514 (643)
+..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..+ ..+..+.+.|+++.|+.++++++..++..++.+|.+|+.
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999774 567778889999999999999999999999999999997
Q ss_pred CCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
+++++..+++.|+++.|+++|.+. .......++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+++|+++|.+
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567899999999999999999874 4456778899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
||...+... ...|+++.|+.++.++++.++..|.++|.+|...
T Consensus 254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 998754321 1247899999999999999999999999999763
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=228.40 Aligned_cols=278 Identities=19% Similarity=0.214 Sum_probs=244.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k 437 (643)
.+.++.|+..|++.++.++..|+..|.+++..+ .++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467999999999999999999999999999654 56766664 48999999999865 8999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-C
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-N 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~ 515 (643)
..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..+ ..+..+.+.|+++.|+.+|++++.+.+..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998764 567777889999999999999998888888999999997 7
Q ss_pred CCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH------------------
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII------------------ 576 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL------------------ 576 (643)
++++..+++.|+++.|+++|.+. ....++.++.+|.+|+.+++++..+++.|+++.|+.++
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 78899999999999999999874 45678889999999999999999998888777665544
Q ss_pred ---------------------hcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh-CC-HHHHHHHHHHH
Q 006494 577 ---------------------KNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC-GT-NRGQRKANSLL 633 (643)
Q Consensus 577 ---------------------~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL 633 (643)
.+.++..++.|+.+|.+|+.+++.....+.+.|+++.|+.++.+ ++ +.++..|..+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 44567778888888888888888888888899999999999976 33 79999999999
Q ss_pred HHhhh
Q 006494 634 QHMSK 638 (643)
Q Consensus 634 ~~l~~ 638 (643)
.+|..
T Consensus 332 ~nL~~ 336 (644)
T 2z6h_A 332 RHLTS 336 (644)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 99964
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=202.89 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=175.7
Q ss_pred HHHHHHHHhhcCCCH--HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhH
Q 006494 361 EEICSLIQNLSSSQL--NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k 437 (643)
..++.+|+.|.++++ +++..|+..|++++..++.+|..+.+.|+||+|+.+|++++.++|+.|+++|.||+. +++||
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999999888 889999999999999999999999999999999999999999999999999999997 58999
Q ss_pred HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cC-------------Chh
Q 006494 438 RHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YG-------------SIR 500 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~-------------~~~ 500 (643)
..|++.|+|++|+++|+ +++.+++++|+++|++||..+.+|..|.+ +++++|+.++. +| +..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 57999999999999999999999999987 47999998763 22 458
Q ss_pred hHHHHHHHHHHhhc-CCCchHHHHhc-CcHHHHHHHhccC------ChhhHHHHHHHHHHHhCC
Q 006494 501 GKKDAATALFNLSI-NQSNKSRAIKA-GIIPSLLKLLEDK------ALGMVDEALSILQLLASH 556 (643)
Q Consensus 501 ~k~~A~~aL~nLs~-~~en~~~iv~~-G~v~~Lv~lL~~~------~~~~~~~Al~iL~nLa~~ 556 (643)
++.+|+.+|+||++ ++++|..|.+. |+|+.|+.++... +...+|.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998 45889999885 7789999999752 456899999999999975
No 29
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.2e-22 Score=221.65 Aligned_cols=280 Identities=16% Similarity=0.169 Sum_probs=237.8
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChh--------------------------------------hHHHH
Q 006494 359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPD--------------------------------------NRILI 399 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~--------------------------------------~r~~i 399 (643)
+.+.+..|+..+++ .+....+.++..|.|++...+. ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 46779999999984 6778889999999988763321 45667
Q ss_pred HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHH---HHHHHHHHHHHcccccc
Q 006494 400 ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE---ARENSAAALFSLSMLDE 476 (643)
Q Consensus 400 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~---~~~~Aa~~L~~Ls~~~~ 476 (643)
.++|+++.|+.+++++++.+++.|+++|.||+.++++|..++..|++++|+.+|.+++.. .+.+|+.+|.+|+...+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999988654 89999999999986655
Q ss_pred ccchhhc---cCChHHHHHHccc--CCh------------hhHHHHHHHHHHhhcCCCc-----hHHHHhc-CcHHHHHH
Q 006494 477 NRVMVGN---LNGIPPLVNLLRY--GSI------------RGKKDAATALFNLSINQSN-----KSRAIKA-GIIPSLLK 533 (643)
Q Consensus 477 ~k~~i~~---~g~i~~Lv~lL~s--~~~------------~~k~~A~~aL~nLs~~~en-----~~~iv~~-G~v~~Lv~ 533 (643)
....+.. .|+|++|+.+|.. +.. ..+..|+.||.||++.++| +.+++.. |+++.|.+
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 4444432 4899999999983 211 1278999999999998743 7889995 99999999
Q ss_pred HhccCChhhHHHHHHHHHHHhCChhhH-HHHHhc------CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 006494 534 LLEDKALGMVDEALSILQLLASHPEGR-NEIGRL------SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL 606 (643)
Q Consensus 534 lL~~~~~~~~~~Al~iL~nLa~~~~~~-~~i~~~------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~ 606 (643)
+|.+++..++..|+++++||+.+++++ ..+... +.++.|+.++.+++...|..|+++|.+++...+..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999988899999999999999998875 355432 2488999999999999999999999999888888777777
Q ss_pred Hc-CcHHHHHHHHhh--CCHHHHHHHHHHHHHhhh
Q 006494 607 QY-GVYEHLVEITRC--GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 607 ~~-g~i~~L~~ll~~--g~~~~k~~A~~lL~~l~~ 638 (643)
+. ++++.|+.++.+ .++..+..+..++.+|..
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 75 899999999999 899999999999999986
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=3.1e-21 Score=220.85 Aligned_cols=277 Identities=19% Similarity=0.171 Sum_probs=246.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRH 439 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~ 439 (643)
+.++.|++.|.+.++.++..|+..|.+++..++..+..+.+.|+++.|+.+|++++++++..++.+|.+|+. +++++..
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 689999999999999999999999999998878888889999999999999999999999999999999996 7889999
Q ss_pred HHhcCChHHHHHHHccCC-HHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 440 IAREGAIPAIIEILQNGT-NEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
+.+.|+++.|+.+|++++ ...+..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.||+.....
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 999999999999999874 6778899999999999999999999999999999999999999999999999999975433
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhc
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGT--PKNKECATSVLLELG 595 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~ 595 (643)
. ....|+++.|+++|.+.+..+++.|+++|.+|+.+ ++.+..+.+.|+++.|+.++.+.+ +..++.|+.+|.+|+
T Consensus 258 ~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 258 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp C--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 2 12248899999999998999999999999999997 578999999999999999998733 799999999999999
Q ss_pred cCCH---HHHHHHHHcCcHHHHHHHHhhCC-HHHHHHHHHHHHHhhhc
Q 006494 596 LNNS---YFILAALQYGVYEHLVEITRCGT-NRGQRKANSLLQHMSKR 639 (643)
Q Consensus 596 ~~~~---~~~~~~~~~g~i~~L~~ll~~g~-~~~k~~A~~lL~~l~~~ 639 (643)
...+ .....+.+.|+++.|+.++.+.+ +..++.|.++|.+|...
T Consensus 336 ~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 336 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp SSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 8644 23344777899999999998875 69999999999998753
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=197.62 Aligned_cols=194 Identities=20% Similarity=0.302 Sum_probs=173.8
Q ss_pred CChHHHHHHhcCCCH--HHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-ccccc
Q 006494 403 GGIRPLVQLLSYPDS--KIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENR 478 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~--~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k 478 (643)
-.++.|+.+|.++++ ++|..|+..|.+|+ .++.++..+.+.|+||+|+.+|++++.+++..|+++|.+|+. ++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999988 88999999999999 467899999999999999999999999999999999999997 46799
Q ss_pred chhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc----------------CChh
Q 006494 479 VMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED----------------KALG 541 (643)
Q Consensus 479 ~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~----------------~~~~ 541 (643)
..|.+.|+|++|+.+|. +++..+++.|+.+|+||+.++++|..+++. ++++|++++.. .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 478999999999999999999999999875 69999987631 1447
Q ss_pred hHHHHHHHHHHHhCC-hhhHHHHHhc-CcHHHHHHHHhcC------ChHHHHHHHHHHHHhccC
Q 006494 542 MVDEALSILQLLASH-PEGRNEIGRL-SFIETLVEIIKNG------TPKNKECATSVLLELGLN 597 (643)
Q Consensus 542 ~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~ 597 (643)
+++.|..+|.||++. +++|..+.+. |.|+.|+.+++.+ +...+|+|+.+|.+||..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 899999999999984 7999999986 6789999999863 457899999999999975
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=6.1e-21 Score=222.65 Aligned_cols=276 Identities=23% Similarity=0.293 Sum_probs=245.0
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH
Q 006494 360 IEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k 437 (643)
.+.++.|++.|.++ +++++..|+..|++|+. +..++..+.+.|+++.|+.+|++++..++..|+.+|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47899999999754 89999999999999985 577888999999999999999999999999999999999976 5667
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCCh-hhHHHHHHHHHHhhcC
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSI-RGKKDAATALFNLSIN 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~-~~k~~A~~aL~nLs~~ 515 (643)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+.+.|+++.|+.++++++. ..+..++.+|.+|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 777789999999999999999999999999999986 46788899999999999999988755 4556788999999999
Q ss_pred CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
++++..+++.|+++.|+.+|.+.+..++..|+++|.+|+...... ....++++.|+.+|.+.++..++.|+.+|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888899999999999999874321 122478999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHhh-CC-HHHHHHHHHHHHHhhh
Q 006494 596 LNNSYFILAALQYGVYEHLVEITRC-GT-NRGQRKANSLLQHMSK 638 (643)
Q Consensus 596 ~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL~~l~~ 638 (643)
.+++..+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9998888889999999999999976 43 4899999999999874
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=5.5e-21 Score=186.48 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=180.3
Q ss_pred hhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-ccccc
Q 006494 401 NNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENR 478 (643)
Q Consensus 401 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k 478 (643)
..|..+.|+.+|.+++++++..|+.+|.+++ .+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3578899999999999999999999999999 567888899999999999999999999999999999999995 55688
Q ss_pred chhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-
Q 006494 479 VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH- 556 (643)
Q Consensus 479 ~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~- 556 (643)
..+.+.|+++.|+.+|++++..++..|+++|.||+.. ++++..+++.|+++.|+++|.+++..++..|+++|.||+.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999974 44567888999999999999998899999999999999998
Q ss_pred hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
++.+..+.+.|+++.|+.++.++++..++.|+.+|.+|+.+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999863
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=3.5e-21 Score=224.68 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=245.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k 437 (643)
.+.++.|+..|.+.++.++..|+..|.+++. +..++..+.+ .|+++.|+.+|.++ +++++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 5789999999999999999999999999996 4566767764 48999999999754 8999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-C
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-N 515 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~ 515 (643)
..+.+.|+++.|+.+|++++..++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999764 567777789999999999999998999999999999997 5
Q ss_pred CCchHHHHhcCcHHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 516 QSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 516 ~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
++++..+++.|+++.|+.+|.+.+ ....+.++.+|.+|+.++..+..+++.|+++.|+.++.++++..++.|+.+|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 778999999999999999998754 4466788999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 595 GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
|...... ....++++.|+.++.+.++.+++.|..+|.+|...
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9876431 11246899999999999999999999999999753
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=8.3e-21 Score=185.20 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=181.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~ 438 (643)
.+..+.|+..|.+.+++++..|+..|.+++..++.++..+.+.|+++.|+.+|++++++++..|+.+|.|++. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567889999999999999999999999998899999999999999999999999999999999999999994 678888
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-C
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-Q 516 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~ 516 (643)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.++++++..++..|+.+|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999654 4667788899999999999999999999999999999986 6
Q ss_pred CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
+++..+++.|+++.|++++.+++..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 7788889999999999999999999999999999999864
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.82 E-value=9.5e-21 Score=177.48 Aligned_cols=77 Identities=26% Similarity=0.426 Sum_probs=71.9
Q ss_pred CCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494 266 TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE 342 (643)
Q Consensus 266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~ 342 (643)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+.++...+++||..++.+|..|+..||+.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 35689999999999999999999999999999999999975558999999999999999999999999999999875
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.81 E-value=1.1e-20 Score=161.50 Aligned_cols=75 Identities=31% Similarity=0.420 Sum_probs=70.3
Q ss_pred cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494 265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN 340 (643)
Q Consensus 265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~ 340 (643)
....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+|++++...+++||..++.+|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 6899999999999999999999999999999876
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.81 E-value=9.2e-21 Score=157.23 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=69.6
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV 341 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~ 341 (643)
..+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+|++++....++||..++++|+.|+.+++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999999999999999999996 68999999999999999999999999999988753
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.81 E-value=2e-20 Score=159.21 Aligned_cols=75 Identities=29% Similarity=0.442 Sum_probs=71.0
Q ss_pred CCCCCcccCccCcccccCCeecCCc-ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATG-QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE 342 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~ 342 (643)
..+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+|++++....++||..++.+|+.|+..++..
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 5689999999999999999999999 99999999999987 679999999999999999999999999999988765
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.7e-19 Score=197.18 Aligned_cols=277 Identities=14% Similarity=0.115 Sum_probs=227.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChh--
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDET-- 435 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~-- 435 (643)
....+.+++.|...+.+.+..|++.|..++. +++.|..+++ .|+++.|+.+++. .+..+...++.+|.||+.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3477888888888777789999999999994 6777888875 5779999999995 788899999999999975211
Q ss_pred -------------------------------------hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc
Q 006494 436 -------------------------------------NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR 478 (643)
Q Consensus 436 -------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k 478 (643)
++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4456668999999999999999999999999999999999999
Q ss_pred chhhccCChHHHHHHcccCChh---hHHHHHHHHHHhhcCCCchHHHH--h-cCcHHHHHHHhcc-CChh----------
Q 006494 479 VMVGNLNGIPPLVNLLRYGSIR---GKKDAATALFNLSINQSNKSRAI--K-AGIIPSLLKLLED-KALG---------- 541 (643)
Q Consensus 479 ~~i~~~g~i~~Lv~lL~s~~~~---~k~~A~~aL~nLs~~~en~~~iv--~-~G~v~~Lv~lL~~-~~~~---------- 541 (643)
..+.+.|++++|+.+|.+++.. ++..|+.+|.+|+...+....+- . .|++++|+++|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999988644 89999999999986554433321 1 4999999999973 2111
Q ss_pred --h-HHHHHHHHHHHhCCh-----hhHHHHHhc-CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-----
Q 006494 542 --M-VDEALSILQLLASHP-----EGRNEIGRL-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ----- 607 (643)
Q Consensus 542 --~-~~~Al~iL~nLa~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~----- 607 (643)
. +-.|+.+|.|||..+ +.|..|++. |+++.|..+|.+.++..|..|+.++++|+.+.....+.+.+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 2 668999999999986 457888885 99999999999999999999999999999855432122221
Q ss_pred -cCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 608 -YGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 608 -~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.+.++.|+.++.+++.+.|+.|.++|.++.
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 123889999999999999999999999985
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=1.8e-18 Score=177.94 Aligned_cols=222 Identities=16% Similarity=0.146 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHc
Q 006494 417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE-ILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLL 494 (643)
Q Consensus 417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL 494 (643)
.+.+..|+..|.++..+.+|...+.+.|++++++. +|++++++++..|+++|.+++.++ ..+..+.+.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677889999999998889999999999999999 999999999999999999998765 5788899999999999999
Q ss_pred ccC-ChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHH
Q 006494 495 RYG-SIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIET 571 (643)
Q Consensus 495 ~s~-~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~ 571 (643)
+++ +..+++.|+++|.||+.+. +....++++|+++.|+.+|.+++..++..|+++|.+|+.. ++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 875 7889999999999999754 4567888999999999999999999999999999999885 788999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHc--CcHHHH---HHHHh-hC-CHHHHHHHHHHHHHhhh
Q 006494 572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQY--GVYEHL---VEITR-CG-TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~ll~-~g-~~~~k~~A~~lL~~l~~ 638 (643)
|+.+|.+.++..++.|+.+|.+|+...+......... .....| .+-++ .. +....++|..++..+..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999866544433221 122222 22233 22 56888999999987753
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=1.2e-17 Score=171.70 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=191.1
Q ss_pred HhHHHHHHHHHhhcCC------------CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHH
Q 006494 358 ALIEEICSLIQNLSSS------------QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTV 424 (643)
Q Consensus 358 ~~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~ 424 (643)
.+...++..+..|.+. +.+.+..|+..|..+. .+.++...+...|++++|+. +|.++++.+++.|+
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 3445566666666653 2356788999999999 46778888999999999999 99999999999999
Q ss_pred HHHHhcccC-hhhHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhh
Q 006494 425 TALLNLSLD-ETNKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRG 501 (643)
Q Consensus 425 ~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~ 501 (643)
++|.|++.+ +..+..+++.|++++|+.+|+++ +..++..|+++|.+|+... ..+..+.+.|+++.|+.+|++++..+
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999999865 66788888999999999999964 7899999999999998654 45667888899999999999999999
Q ss_pred HHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhc-CcHH-HH---HH
Q 006494 502 KKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRL-SFIE-TL---VE 574 (643)
Q Consensus 502 k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~-~L---v~ 574 (643)
++.|+++|.+|+. +++.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+.. +......... ..+. .| .+
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~ 263 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ 263 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999987 567789999999999999999998899999999999999987 3333333221 1122 22 22
Q ss_pred HHhcC--ChHHHHHHHHHHHHhcc
Q 006494 575 IIKNG--TPKNKECATSVLLELGL 596 (643)
Q Consensus 575 lL~~~--s~~~ke~A~~~L~~L~~ 596 (643)
-++.. ..+..+.|..++..+..
T Consensus 264 ~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 264 LLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HccchHHHHHHHHHHHHHHHHHcC
Confidence 33322 24666777777766654
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.76 E-value=7e-19 Score=143.83 Aligned_cols=76 Identities=58% Similarity=1.099 Sum_probs=72.0
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE 342 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~ 342 (643)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++....+.||..++.+|+.|..+++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999987889999999999999999999999999999999864
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=1.8e-17 Score=169.67 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=72.7
Q ss_pred cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494 265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE 342 (643)
Q Consensus 265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~ 342 (643)
....+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+.++....++||..++.+|..|+..+|+.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 345789999999999999999999999999999999999986677999999999999999999999999999999865
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-18 Score=142.92 Aligned_cols=73 Identities=33% Similarity=0.518 Sum_probs=64.9
Q ss_pred CCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcC-----CCCCCCCCcc---cCCCCCCchhhhHHHHHHHHhh
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSN-----HKTCPKTGQI---LDHLSLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~-----~~~cP~~~~~---l~~~~l~pn~~lr~lI~~w~~~ 338 (643)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+|+.+ +...+++||..|+.+|..|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999853 4689995544 8889999999999999999987
Q ss_pred cc
Q 006494 339 NN 340 (643)
Q Consensus 339 ~~ 340 (643)
++
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.66 E-value=8.2e-17 Score=183.19 Aligned_cols=75 Identities=32% Similarity=0.418 Sum_probs=70.2
Q ss_pred CCCCCCcccCccCcccccCCeecCCc-ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494 266 TMLVPHEFLCPVTLEIMTDPVIVATG-QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV 341 (643)
Q Consensus 266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~ 341 (643)
..++|++|.|||++++|+|||++|+| +||||.+|++|+.. +.+||+|+++|.+..++||+.+|..|++||.+++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999997 79999999999997 67999999999999999999999999999998753
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.57 E-value=4.7e-16 Score=119.69 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=50.4
Q ss_pred cccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhh
Q 006494 272 EFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~ 327 (643)
.|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|+++|...+++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999986 357999999999999999864
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=123.08 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=68.1
Q ss_pred CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhc-CCCCCCCCCccc-CCCCCCchhhhHHHHHHHHhhcccc
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS-NHKTCPKTGQIL-DHLSLAPNYALRNLIVQWCEKNNVE 342 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~-~~~~cP~~~~~l-~~~~l~pn~~lr~lI~~w~~~~~~~ 342 (643)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.||..++.+|+.|...+++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 46789999999999999999999 9999999999999974 457899999997 5678999999999999999877653
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.51 E-value=9.5e-13 Score=144.99 Aligned_cols=276 Identities=18% Similarity=0.197 Sum_probs=220.7
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccCh-
Q 006494 359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDE- 434 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~- 434 (643)
..++|+.|+..+.+ .-.+.|+.|+..|+.+++. ++..+ ..++++.|+..|+.+ |.++...++.+|.++...+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 35799999999974 5778999999999999864 44444 356899999999764 8888999999998864321
Q ss_pred h-----------------hHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhc-cCChHHHHHH
Q 006494 435 T-----------------NKRHI-AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGN-LNGIPPLVNL 493 (643)
Q Consensus 435 ~-----------------~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~-~g~i~~Lv~l 493 (643)
. +...+ .+.+.++.|+.+|++.+..+|.++..+|..|+.... ++..|.. .++|+.|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 11223 367899999999999999999999999999975443 6777775 7999999999
Q ss_pred cccCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHHHhcC
Q 006494 494 LRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH-PEGRNEIGRLS 567 (643)
Q Consensus 494 L~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g 567 (643)
|.+....++-.|+..|.+|+.+..+.++++. .|+++.|+.++..+ ...+++.|+.+|.||..+ +.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999998888888887 69999999999873 336899999999999997 67999999999
Q ss_pred cHHHHHHHHhcCCh------HHHHH---HHHHHHHhccCC------HHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHH
Q 006494 568 FIETLVEIIKNGTP------KNKEC---ATSVLLELGLNN------SYFILAALQYGVYEHLVEITRCG--TNRGQRKAN 630 (643)
Q Consensus 568 ~i~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~ 630 (643)
+++.|..++..+.+ ..-.+ ++.++..|+..+ ..+...+.+.|++..|++++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975322 12223 667777777752 34667788899999999998755 567787777
Q ss_pred HHHHHhhh
Q 006494 631 SLLQHMSK 638 (643)
Q Consensus 631 ~lL~~l~~ 638 (643)
.++-.+.+
T Consensus 335 ~tla~~ir 342 (651)
T 3grl_A 335 NTVSEVIR 342 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77776654
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.6e-13 Score=134.33 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=64.3
Q ss_pred CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhc-CCCCCCC--CCcccCCCCCCchhhhHHHHHHHHhh
Q 006494 268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNS-NHKTCPK--TGQILDHLSLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~-~~~~cP~--~~~~l~~~~l~pn~~lr~lI~~w~~~ 338 (643)
....+|+||||+++|+|||+. .|||+|||.||.+||.. +..+||+ |++++...++.||..|+.+|..|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457899999999999999985 99999999999999986 3568999 99999999999999999999999764
No 51
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=7.8e-14 Score=124.38 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=64.0
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC-CCCCchhhhHHHHHHHHhh
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~~ 338 (643)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++.++..|.-.
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 357899999999999999999999999999999999766799999999987 7899999999999998753
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=125.59 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=64.0
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC-CCCchhhhHHHHHHHHh
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL-SLAPNYALRNLIVQWCE 337 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-~l~pn~~lr~lI~~w~~ 337 (643)
++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..++.++..|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999998667899999999987 89999999999998874
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.35 E-value=6.8e-11 Score=130.32 Aligned_cols=280 Identities=14% Similarity=0.079 Sum_probs=215.6
Q ss_pred hHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhChh-----------------hH-HHHHhhCChHHHHHHhcCCCHH
Q 006494 359 LIEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENPD-----------------NR-ILIANNGGIRPLVQLLSYPDSK 418 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~~~ 418 (643)
...+++.|+..|+. .|.+....++..|.++...++. +. ..+.+.+.|+.|+.+|...+..
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~ 137 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence 45678999999975 4777777888888776543332 11 1234568899999999999999
Q ss_pred HHHHHHHHHHhcccC-h-hhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHc
Q 006494 419 IQEHTVTALLNLSLD-E-TNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLL 494 (643)
Q Consensus 419 ~~~~a~~~L~nLs~~-~-~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL 494 (643)
++.+++..|..|+.+ + .++..|. ..++++.|+.+|++....+|..+..+|.+|+..+..-.+++. .|+++.|++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 999999999998854 3 3788888 569999999999999999999999999999987776555555 79999999999
Q ss_pred ccCC----hhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChh------hH---HHHHHHHHHHhCC----
Q 006494 495 RYGS----IRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALG------MV---DEALSILQLLASH---- 556 (643)
Q Consensus 495 ~s~~----~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~------~~---~~Al~iL~nLa~~---- 556 (643)
+.+. ..+..+++.+|.||..+ ..|+..+.+.|+++.|..+|..+... .. ..++.++..|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7643 36778999999999985 45899999999999999999653221 22 2367788888775
Q ss_pred ---hhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhccCCHHHHHHHHHcC-----cHHHHHH----HHhhC-
Q 006494 557 ---PEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLELGLNNSYFILAALQYG-----VYEHLVE----ITRCG- 621 (643)
Q Consensus 557 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g-----~i~~L~~----ll~~g- 621 (643)
..++..+.+.|++..|++++... +...+..|+.++..+.++++.....+.+.. ..|.++. ++.+.
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 24688889999999999999864 578899999999999999998777766532 1233333 34333
Q ss_pred CHHHHHHHHHHHHHhhh
Q 006494 622 TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 622 ~~~~k~~A~~lL~~l~~ 638 (643)
....|-.|..+++.+..
T Consensus 378 ~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 56778888888886653
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.3e-13 Score=112.77 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN 339 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~ 339 (643)
+++++.||||++.|.+||++ +|||+||+.||.+|+.. +.+||.|+.++....+.||..++.+++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35789999999999999998 89999999999999996 579999999999888999999999999997643
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=110.44 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=62.8
Q ss_pred CCCcccCccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhh
Q 006494 269 VPHEFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEK 338 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~ 338 (643)
+.+++.||||+++|.+||+ ++|||+||+.||.+|+..+..+||.|+.++....+.+|..+..+++..-..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4578999999999999999 999999999999999998667999999999999999999888887766543
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=3.9e-13 Score=109.68 Aligned_cols=66 Identities=27% Similarity=0.474 Sum_probs=58.6
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcC------CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN------HKTCPKTGQILDHLSLAPNYALRNLI 332 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~------~~~cP~~~~~l~~~~l~pn~~lr~lI 332 (643)
..+++++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 3567899999999999999999999999999999999863 57899999999988899998876653
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.24 E-value=2.6e-10 Score=115.88 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=158.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..++.|+..|.+.++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++...+.....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 468899999999999999999999988751 23678899999999999999999999887643322111
Q ss_pred HhcCChHHHH-HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494 441 AREGAIPAII-EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 441 ~~~g~i~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
.++.+. .++++.++.+|..++.+|..+...+. .....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 223333 23456788899999999988753221 1123467888888888888888888888877643
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.++++.|+.++.+++..+...|+.+|..+.... ..+++.|+.++.+.++.+|..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 357888888888888888888888888874321 2456778888888888888888888877752
Q ss_pred HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
..+++.|..++.+.+ ++..|...|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 234555555554432 444444444444
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=2.5e-12 Score=106.25 Aligned_cols=66 Identities=26% Similarity=0.506 Sum_probs=58.9
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcC-----CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN-----HKTCPKTGQILDHLSLAPNYALRNLI 332 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~-----~~~cP~~~~~l~~~~l~pn~~lr~lI 332 (643)
..+.++|.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.||..++.+|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4567899999999999999999999999999999999863 57899999999988999998877654
No 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=2.9e-12 Score=111.21 Aligned_cols=68 Identities=13% Similarity=0.353 Sum_probs=61.0
Q ss_pred CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCC----CCCchhhhHHHHHHHHh
Q 006494 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHL----SLAPNYALRNLIVQWCE 337 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~w~~ 337 (643)
+++++.||||+++|.+||++ +|||+||+.||.+|+.. ..+||.|+.++... .+.+|..++.++..|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 46889999999999999998 99999999999999997 48899999999865 67889999999988753
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=3.4e-10 Score=109.86 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=159.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
...++.|++.|.+.++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4578999999999999999999999987652 357899999999999999999999998764
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
..++++.|+..|++.++.+|..|+.+|..+. ..++++.|+.++.+.++.++..|+.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 3467899999999999999999999998874 34688999999999999999999999998842
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
..+++.|..++.++++.+...|+.+|..+.. ..+++.|..++.+.++.+|..|..+|..+.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3578999999988889999999999998853 3578889999999999999999999998887654
Q ss_pred H
Q 006494 600 Y 600 (643)
Q Consensus 600 ~ 600 (643)
.
T Consensus 207 ~ 207 (211)
T 3ltm_A 207 H 207 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=5.1e-10 Score=108.60 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=160.3
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV 481 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 481 (643)
.+.++.|+..|.++++.++..|+..|..+. ..++++.|+.+|.++++.+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 457899999999999999999999998754 2468999999999999999999999998864
Q ss_pred hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 006494 482 GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRN 561 (643)
Q Consensus 482 ~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~ 561 (643)
..++++.|+.+|.+.++.++..|+.+|..+.. .++++.|+++|.++++.+...|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 34688999999999999999999999998753 3588999999998999999999999998853
Q ss_pred HHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494 562 EIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 562 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~ 640 (643)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|...|..+....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999998853 346888999999999999999999999887643
No 62
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=3e-12 Score=113.01 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=63.1
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW 335 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 335 (643)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.|+..++..|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 467889999999999999999999999999999999997666999999999988889999998888765
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.1e-12 Score=97.76 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=49.9
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL 322 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 322 (643)
..+++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 35678999999999999999999999999999999997667899999999876543
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-12 Score=105.94 Aligned_cols=66 Identities=21% Similarity=0.486 Sum_probs=59.0
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc-----CCCCCCCCCcccCCCCCCchhhhHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS-----NHKTCPKTGQILDHLSLAPNYALRNLI 332 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~lI 332 (643)
..+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.||..++.+|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 456789999999999999999999999999999999986 367899999999998999998887654
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=2.1e-12 Score=113.41 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC-------CCCCchhhhHHHHHHHH
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-------LSLAPNYALRNLIVQWC 336 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-------~~l~pn~~lr~lI~~w~ 336 (643)
...++|.||||++++.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..+..+|..|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3457899999999999999999999999999999998877899999999863 56778999999998886
No 66
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=3.8e-12 Score=119.30 Aligned_cols=70 Identities=23% Similarity=0.427 Sum_probs=62.3
Q ss_pred CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccC-CCCCCchhhhHHHHHHHHh
Q 006494 268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILD-HLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~pn~~lr~lI~~w~~ 337 (643)
.+.+++.||||++.+.+||++ +|||+||+.||.+|+..++.+||.|+.++. ...+.||..++.+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999997 999999999999999987889999999985 4568899999999998854
No 67
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20 E-value=5.4e-12 Score=114.55 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=52.8
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC 336 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 336 (643)
.+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|+.++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 357899999999999999999999999999999986 57899999988643 34555556665554
No 68
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6e-12 Score=103.16 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHH
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~ 330 (643)
...+++.||||++.+.+||+++|||+||+.||.+|+.. ..+||.|+.++. ..+.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 45678999999999999999999999999999999986 678999999997 56777755433
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=1.2e-09 Score=105.10 Aligned_cols=187 Identities=19% Similarity=0.239 Sum_probs=160.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
..+..+.+++.|.+.++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35788999999999999999999999987652 257899999999999999999999998754
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en 518 (643)
...+++.|+..|.+.++.+|..|+.+|..+. ...+++.|+.++.+.++.++..|+.+|.++..
T Consensus 74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3457899999999999999999999998863 34588999999999999999999999998852
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
.++++.|+.++.++++.+...|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+-.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4688999999998888999999999998832 3478889999999999999999999987653
No 70
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=99.23 Aligned_cols=59 Identities=32% Similarity=0.488 Sum_probs=49.4
Q ss_pred CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcC-CCCCCCCCcccC-CCCCCch
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSN-HKTCPKTGQILD-HLSLAPN 325 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~-~~~l~pn 325 (643)
..+++++.||||+++|.+||+++ |||+||+.||.+|+... ..+||.|++++. ...+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45789999999999999999999 99999999999999853 468999999754 3334444
No 71
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=5.3e-12 Score=111.17 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=62.3
Q ss_pred CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494 269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN 339 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~ 339 (643)
+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++....+.||..++.++..|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35789999999999999999 9999999999999997 68999999998889999999999999886543
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=1.2e-09 Score=105.11 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=159.4
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
+..+.++..|+++++.++..|+.+|..+. ..+.++.|+..|+++++.+|..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 45688999999999999999999998754 2367899999999999999999999998763
Q ss_pred ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
..++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|.++++.++..|+.+|..+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 34688999999999999999999999998743 3588999999998899999999999998753
Q ss_pred HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.++..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999998842 2368889999999999999999999988764
No 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.5e-11 Score=107.38 Aligned_cols=68 Identities=19% Similarity=0.397 Sum_probs=60.4
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcC--CCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN--HKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 337 (643)
++++.||||++.+.+|++++|||+||+.||.+|+..+ ..+||.|+.++....+.+|..+..++..+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999853 3589999999999999999888888877654
No 74
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=96.52 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=52.2
Q ss_pred CCCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
..+.+++.||||++.+.|||++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4567899999999999999997 99999999999999987 5799999999988777665
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=94.94 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=48.8
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCCCcccCCCC
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKTGQILDHLS 321 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~ 321 (643)
..+++++.||||++.+.+||+++|||+||+.||.+|+.. +...||.|++++...+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999999999999999999999999999973 4678999999887654
No 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=5.2e-11 Score=93.08 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=49.7
Q ss_pred CcccCccCcc-cccCC----eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 271 HEFLCPVTLE-IMTDP----VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 271 ~~f~Cpi~~~-~m~dP----v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777889999999988877765
No 77
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.07 E-value=1.6e-11 Score=111.55 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC---------CCCCchhhhHHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH---------LSLAPNYALRNLIV 333 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~---------~~l~pn~~lr~lI~ 333 (643)
..++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++.. ..+.|+..+++.|.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 35789999999999999999999999999999999999876799999987532 24557777777664
No 78
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=4e-11 Score=112.91 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=62.6
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW 335 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 335 (643)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.|+..++..|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 467899999999999999999999999999999999987667999999999988889998888887653
No 79
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=3.3e-11 Score=105.91 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc-hhhhHHHHHH
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP-NYALRNLIVQ 334 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~ 334 (643)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.+ +..+..++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 45689999999999999999999999999999999976679999999998777654 5555555543
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=90.39 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=42.3
Q ss_pred CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCC
Q 006494 267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKT 313 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~ 313 (643)
..+.+++.||||++.+.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356789999999999999999999999999999999984 45689986
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.03 E-value=1.1e-10 Score=92.89 Aligned_cols=58 Identities=19% Similarity=0.438 Sum_probs=51.8
Q ss_pred CCCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494 268 LVPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY 326 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 326 (643)
...+++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 345789999999999999 89999999999999999987 47999999999988887764
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.02 E-value=6.5e-09 Score=105.44 Aligned_cols=201 Identities=15% Similarity=0.058 Sum_probs=157.9
Q ss_pred HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccc
Q 006494 400 ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRV 479 (643)
Q Consensus 400 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~ 479 (643)
...+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|++.++.+|..|+.+|..+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 34678999999999999999999999998875 2346889999999999999999999998886432210
Q ss_pred hhhccCChHHHHH-HcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494 480 MVGNLNGIPPLVN-LLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE 558 (643)
Q Consensus 480 ~i~~~g~i~~Lv~-lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~ 558 (643)
...++.|.+ ++.+.++.++..|+.+|.++...... ....+++.|+.++.++++.+...|+.+|.++..
T Consensus 89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 012233432 34667889999999999998742211 123468899999999999999999999987653
Q ss_pred hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.++++.|+.++.+.++.++..|+.+|..+...++ .+++.|..++.+.++.++..|...|..+..
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999998864433 367888999999999999999999988764
No 83
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.96 E-value=3.1e-09 Score=125.11 Aligned_cols=273 Identities=14% Similarity=0.077 Sum_probs=193.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
...++.+++.+.+.++.+|..|+..+..+....+..-.. .-.+.++.|+.++.+++++++..|+.+|.+++..... .
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~ 249 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--R 249 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--H
Confidence 457888888899999999999999998877543321100 0124678888889999999999999999998753211 1
Q ss_pred HH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHc-----------cc--------
Q 006494 440 IA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLL-----------RY-------- 496 (643)
Q Consensus 440 i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL-----------~s-------- 496 (643)
+. -.+.++.++..+++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 11 124677788888888899999999999988754433332221 23566666666 22
Q ss_pred ---CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHH
Q 006494 497 ---GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLV 573 (643)
Q Consensus 497 ---~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv 573 (643)
.+..+++.|+.+|..|+...+. .++ ..+++.+.+++.+.+..+++.|+.+|.+++........-.-.++++.++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1234688888999888863321 111 2467778888888888999999999999998743211111236789999
Q ss_pred HHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 574 EIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 574 ~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
..+.+.++.+|..|+.+|..++...+.......-.++++.|+..+.+.+++++..|...|..+.+
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986432211111113578888988888899999999999998875
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6.8e-10 Score=92.21 Aligned_cols=54 Identities=24% Similarity=0.469 Sum_probs=48.1
Q ss_pred CCCCCcccCccCcccccC----CeecCCcccccHHhHHHHHhcC--CCCCCCCCcccCCC
Q 006494 267 MLVPHEFLCPVTLEIMTD----PVIVATGQTYERESIQRWLNSN--HKTCPKTGQILDHL 320 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~ 320 (643)
..+.+++.||||++.+.+ |++++|||+||+.||.+|+..+ ..+||.|+.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456788999999999999 9999999999999999999864 47899999988654
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.3e-10 Score=85.04 Aligned_cols=46 Identities=30% Similarity=0.666 Sum_probs=41.6
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCC
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKT 313 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~ 313 (643)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999875 56789986
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.6e-10 Score=89.89 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
..+++.||||++.+.+||+++|||+||+.||.+|+.. +.+||+|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 4578999999999999999999999999999999987 4799999998764
No 87
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.92 E-value=1e-08 Score=120.68 Aligned_cols=271 Identities=15% Similarity=0.109 Sum_probs=194.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHH----hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhh
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIA----NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN 436 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~----~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 436 (643)
+.++.|++.+.++++..+..++..|..+++..+..-..-. -...++.++.+++++++.++..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 4689999999999999999999999988865433211000 123567788888888999999999999887644322
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
...-.-...++.++..+.++++++|..++.+|..++..... +..+ .+.++.++.++.+.++.++..|+..+.+++.
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 11111235778888888889999999999999998753321 1111 2467888888888888999999999999987
Q ss_pred CCCchHHHHh---cCcHHHHHHHh-----------cc-----------CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH
Q 006494 515 NQSNKSRAIK---AGIIPSLLKLL-----------ED-----------KALGMVDEALSILQLLASHPEGRNEIGRLSFI 569 (643)
Q Consensus 515 ~~en~~~iv~---~G~v~~Lv~lL-----------~~-----------~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i 569 (643)
....+. .+. ...++.++..+ .+ .+..+...|..+|..|+.... ..+. ...+
T Consensus 286 ~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~ 361 (852)
T 4fdd_A 286 QPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHIL 361 (852)
T ss_dssp STTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHH
T ss_pred chhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHH
Confidence 654333 222 24566676666 22 122356778888888886532 1222 2467
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 570 ETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 570 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.+..++.+.+...|+.|+.+|..++.+.+..... .-.++++.|+.++.+.++++|..|...|..+..
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999987653332 224678999999999999999999999988875
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.91 E-value=3.2e-10 Score=88.06 Aligned_cols=55 Identities=20% Similarity=0.476 Sum_probs=49.0
Q ss_pred CcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494 271 HEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY 326 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 326 (643)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++...++.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 88999999999999999997 67999999999887776653
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=86.49 Aligned_cols=52 Identities=17% Similarity=0.446 Sum_probs=46.5
Q ss_pred CCCCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 267 MLVPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
..+++++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3467889999999999998 88999999999999999987 6799999988753
No 90
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=2.7e-09 Score=86.19 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCCcccCccCcccc--cCCeecC--CcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494 268 LVPHEFLCPVTLEIM--TDPVIVA--TGQTYERESIQRWLNSNHKTCPKTGQILDHLSL 322 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m--~dPv~~~--~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 322 (643)
.+.+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 457889999999999 4677776 999999999999998777889999999876543
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=2.4e-09 Score=86.73 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=48.9
Q ss_pred CCCCcccCccCcccccCCe---ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 268 LVPHEFLCPVTLEIMTDPV---IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv---~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
...+++.||||++.|.+|. +++|||+|++.||.+|+.. +.+||.|+.++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 3567899999999999874 4699999999999999986 4799999999988777665
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.80 E-value=8.1e-08 Score=107.30 Aligned_cols=264 Identities=14% Similarity=0.089 Sum_probs=180.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..++.+...+.+.++.+|..|+..|..++...... ......++.+..+++++++.++..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 45666667778889999999999999988543321 123457888999999999999999999998876421111 1
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc--
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN-- 518 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en-- 518 (643)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++++.++.++..|+.+|..++..-..
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2234778888888888999999999999988742211 112245689999999998999999999999999864322
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
+....-..++|.+..++.+.+..+...++.+|..++..-.. ... ....+|.+..++.+.++.+|..|+.+|..++..-
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 22223356788888888888888888888888887754211 111 2346777888888777888888887777666432
Q ss_pred HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
+... ....++|.|..++.+.+.+.+..+...|..+
T Consensus 395 ~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 395 GIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp CHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1110 1123455555555555555555555555444
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.80 E-value=4.4e-08 Score=109.43 Aligned_cols=265 Identities=14% Similarity=0.018 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
...++.+...+.+.++.+|..++..|..++..-.. .. .....++.+..++++.+++++..++.+|..+...-.. ..
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~ 398 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ 398 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH
Confidence 34667777888889999999999988888743211 11 1234778899999998999999998887766532111 11
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519 (643)
Q Consensus 440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~ 519 (643)
.....++.+..++++.++.+|..++.++..++..-.. .......++.+..++.+.+..++..|+.+|..++..-+..
T Consensus 399 -~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 399 -LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp -HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 1234678888888888999999999999888632111 1122346788889998888999999999999988643322
Q ss_pred HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.....++|.|..++.+.+..+...++.++..++..-.. .. .....++.|+.++.+.++.+|..++.+|..++..-+
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-~~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-DI-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-HH-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-HH-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 22346788888888777888899999999998875221 12 224678999999998999999999999999997533
Q ss_pred HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.. .....++|.|..+..+.+..+|..|...|..+.+
T Consensus 552 ~~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 552 NS---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HH---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hh---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 22 1224578888888888899999999999987753
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.79 E-value=3.3e-08 Score=113.38 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=153.5
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHH-HHcccCChhhHHHHHHHHHHhhcC--CCchH
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLV-NLLRYGSIRGKKDAATALFNLSIN--QSNKS 520 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~s~~~~~k~~A~~aL~nLs~~--~en~~ 520 (643)
..+.++++.|++++++.|..|+++|.+|+.+...+..+...|+|..++ .+|.+.+..++..|+.+|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 356778888999999999999999999998878888888888887765 567888999999999999999974 45688
Q ss_pred HHHhcCcHHHHHHHhccCC---------------------hhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhc
Q 006494 521 RAIKAGIIPSLLKLLEDKA---------------------LGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKN 578 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~---------------------~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~ 578 (643)
.+++.|++++|..+|.... ..+.+.++.+|++||.. .+....+...+.++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999985410 12445688899999975 5667788888999999998854
Q ss_pred ---CChHHHHHHHHHHHHhccCCHHHHHHHHHcCc---HHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 579 ---GTPKNKECATSVLLELGLNNSYFILAALQYGV---YEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 579 ---~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~---i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.....+..|+.+|..++..+......+.+.|. +..|..+ ..+++..+..+..+|+++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 24678999999999999999988888877664 3333333 3445555777888888874
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=3.3e-08 Score=113.36 Aligned_cols=192 Identities=18% Similarity=0.159 Sum_probs=148.8
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHHHcccc--ccccc
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE-ILQNGTNEARENSAAALFSLSML--DENRV 479 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~ 479 (643)
..|.+++..|++++++.|..|+.+|.||+.++..+..+...|++..++. +|.+.+.++|..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3566788889999999999999999999999999999998898887654 67778999999999999999865 45678
Q ss_pred hhhccCChHHHHHHcccCC---------------------hhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhcc
Q 006494 480 MVGNLNGIPPLVNLLRYGS---------------------IRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLED 537 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~~---------------------~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~ 537 (643)
.+...|++++|..++++.. .....+++.+|.+||.. .+....+...|+++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8889999999999985321 12234677888999864 4446677789999999999855
Q ss_pred ---CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcH---HHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 538 ---KALGMVDEALSILQLLASH-PEGRNEIGRLSFI---ETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 538 ---~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
....+...|+.+|.+|+.. ++....+.+.+.. ..+..+.+ .+...+..++.+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 2457899999999999997 5666677665542 33333333 44445677889998874
No 96
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.72 E-value=6.3e-08 Score=104.70 Aligned_cols=273 Identities=15% Similarity=0.098 Sum_probs=186.9
Q ss_pred HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC-h
Q 006494 361 EEICSLIQNLSSS--QLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD-E 434 (643)
Q Consensus 361 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~-~ 434 (643)
+.++.|++.+.++ ++..+..|+..+..+++.. +..-.... ...++.++..|.+. +..++..|+.++.++... .
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999888 8999999999999988643 21100011 23667888899887 789999999999886532 1
Q ss_pred hhH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494 435 TNK-RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN 511 (643)
Q Consensus 435 ~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n 511 (643)
.+- ......-.++.+...+.+.+.+++..++.+|..+...... ...+. .+.++.++..+++.++.++..|+..+.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 110 0111111355666666777899999999999988743321 11111 1567777888888888999999999888
Q ss_pred hhcCCC------------------chHHHHh---cCcHHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 512 LSINQS------------------NKSRAIK---AGIIPSLLKLLEDK-------ALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 512 Ls~~~e------------------n~~~iv~---~G~v~~Lv~lL~~~-------~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
++.... ....+++ ..++|.+++.+.+. +..+...|..+|..|+..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 875420 1111111 34667777777532 23567888889988887532 122
Q ss_pred HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
. ..+++.+...+.+.+...|+.|+.+|..++.+.. ...... -..++|.|+..+.+.++++|..|...|..+...
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 2466777778888889999999999999997543 211111 156899999999999999999999999988764
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.70 E-value=9.1e-09 Score=80.88 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=42.9
Q ss_pred CcccCccCcccccCC-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 271 HEFLCPVTLEIMTDP-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
++..||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 567899999999997 67899999999999999986 4799999998763
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.68 E-value=9.5e-09 Score=77.06 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=42.1
Q ss_pred CcccCccCcccccC----CeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTD----PVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
+++.||||++.+.+ |++++|||.|++.||.+|+..+ .+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 8889999999999999999985 89999998764
No 99
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=4.8e-09 Score=83.05 Aligned_cols=52 Identities=17% Similarity=0.467 Sum_probs=46.5
Q ss_pred CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
.+.+++.||||++.+.+ ++++|||+||+.||.+|+.. +.+||.|+.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 45678999999999999 99999999999999999984 689999999887544
No 100
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2e-08 Score=80.36 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=45.5
Q ss_pred CCCCcccCccCcccccCCeec---CCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494 268 LVPHEFLCPVTLEIMTDPVIV---ATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~dPv~~---~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 320 (643)
...+++.||||++.+.+|..+ +|||.|++.||.+|+.. +.+||.|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 456788999999999988765 99999999999999997 46999999988653
No 101
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.66 E-value=6e-09 Score=93.45 Aligned_cols=55 Identities=18% Similarity=0.439 Sum_probs=49.0
Q ss_pred CCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494 270 PHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 325 (643)
++++.||||++.+.+| |+++|||+||+.||.+|+.. +.+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999987 4699999999987666553
No 102
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.66 E-value=4.9e-07 Score=101.89 Aligned_cols=264 Identities=13% Similarity=0.108 Sum_probs=179.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
...++.+.+.|.+.++.+|..|+..+..+.+.+++. +.+.+.++.|..+|.++++.++.+|+.+|..++.+......
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 456777889999999999999999999998766552 23356789999999999999999999999998865421100
Q ss_pred H-HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc----
Q 006494 440 I-AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI---- 514 (643)
Q Consensus 440 i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~---- 514 (643)
+ ...+.+..|+..+...++..+.....++..+...++. .....++.+..++++.+..++..|+.++.++..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0 1123466677777777777777777777766532221 013466778888888888899999999999874
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh------------------h-HHHH------Hhc--
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE------------------G-RNEI------GRL-- 566 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~------------------~-~~~i------~~~-- 566 (643)
+++.... +-..+.++|+.++. .++.++-.|+..|..++.. ++ . +.++ +..
T Consensus 273 ~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 273 DSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp TTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred CHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 2232222 22345667776554 5667777777777777641 11 0 1111 112
Q ss_pred --CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 567 --SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 567 --g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
..++.|.+++.+.+...+..++..+..+|...+... ..+++.|+.++....+.++..+...++.+-
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 234556666667788999999999999998765432 246778888888777777766666665553
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.63 E-value=1.5e-08 Score=75.98 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=42.9
Q ss_pred CCCcccCccCcccccC---CeecC-CcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 269 VPHEFLCPVTLEIMTD---PVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~d---Pv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
+.++..||||++.+.+ |+.++ |||.|++.||.+|+.. +.+||.|+.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3467889999999998 78887 9999999999999987 679999998763
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=2.7e-08 Score=78.40 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=43.6
Q ss_pred CCCCcccCccCccccc---CCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 268 LVPHEFLCPVTLEIMT---DPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
...++..||||++.+. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3457789999999884 5678999999999999999997 4689999998865
No 105
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=7.5e-09 Score=78.03 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=41.1
Q ss_pred CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999883 5789999988764
No 106
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.62 E-value=5.6e-07 Score=101.44 Aligned_cols=258 Identities=16% Similarity=0.116 Sum_probs=186.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
....+++.+.+.+...+.-+.-.+..+++.+++.. .-++..+.+-|.++++.++..|+.+|.++. .++....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~-- 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY-- 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH--
Confidence 46677888889898888887777888776554432 235677888899999999999999999986 3332222
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch-H
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK-S 520 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~-~ 520 (643)
.++.+...|.+.++.+|..|+.++..+.... ...+...+.++.|..+|.+.++.++..|+.+|..++...+.. .
T Consensus 122 ---l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 122 ---LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp ---HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred ---HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 3567889999999999999999999987532 223333578899999999999999999999999999754322 1
Q ss_pred HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC---
Q 006494 521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN--- 597 (643)
Q Consensus 521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~--- 597 (643)
.-...+.+..|+..+.+.++-.+-..+.+|..++..++.. ....++.+..++++.++.++..|+.++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1112345777888887777777777788887777543211 124577777778888899999999999998742
Q ss_pred CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+++....+. ..+.+.|+.++ ++++.+|..|...|..+..
T Consensus 273 ~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 273 DSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp TTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHH
Confidence 333333222 34567777665 4778888888888887764
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=83.46 Aligned_cols=50 Identities=18% Similarity=0.447 Sum_probs=44.4
Q ss_pred CCCcccCccCcccccC---CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
..++..||||++.+.+ ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4577899999999988 888999999999999999986 5799999988764
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=3.1e-08 Score=79.47 Aligned_cols=50 Identities=16% Similarity=0.431 Sum_probs=44.0
Q ss_pred CCCcccCccCcccccCC---eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIMTDP---VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dP---v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
..++..||||++.+.+| +.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34678899999999988 77899999999999999987 5799999988764
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.56 E-value=4.6e-08 Score=85.34 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCcccCccCcccccCCe------------------ecCCcccccHHhHHHHHhc----CCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPV------------------IVATGQTYERESIQRWLNS----NHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv------------------~~~~g~t~~r~~I~~w~~~----~~~~cP~~~~~l~~ 319 (643)
+.+..||||++.|.+|+ +++|||.|++.||.+|+.. .+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45679999999999886 7899999999999999963 35689999998764
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.47 E-value=7.4e-08 Score=100.49 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=45.3
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 320 (643)
....||||++.+.+||+++|||+||..||..|+..+..+||.|+.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34799999999999999999999999999999996678999999988753
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.46 E-value=3.2e-08 Score=79.20 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=41.1
Q ss_pred CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.+++.||||++.+.+||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 367899999999999999999999 999999999 789999998763
No 112
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.46 E-value=4.1e-06 Score=80.30 Aligned_cols=244 Identities=17% Similarity=0.209 Sum_probs=171.0
Q ss_pred hhhhHHHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhC
Q 006494 325 NYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN-RILIANNG 403 (643)
Q Consensus 325 n~~lr~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g 403 (643)
-..++..+..|.-..-++. ...+++.+..|+..|...|+.++.+++..|..+.+.-+.. +..+.+ .
T Consensus 9 ~~~lre~L~sWkiK~a~el------------a~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~ 75 (265)
T 3b2a_A 9 KTELRELVLSWQILDAVSL------------ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-R 75 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHH------------HHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHhhHHHHHHH------------HHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-H
Confidence 3566777777754322210 1123568889999999999999999999999998874333 333333 4
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494 404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482 (643)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 482 (643)
.++.+++++++.|..+..+|+.+|..|-.+. -....+.. .+..+..+++++++-.+..|+-.+..|...+..
T Consensus 76 ~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~----- 148 (265)
T 3b2a_A 76 HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS----- 148 (265)
T ss_dssp HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-----
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-----
Confidence 7899999999999999999999998876442 22333332 356788888999999999999999999433333
Q ss_pred ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~ 562 (643)
.+.+..+..++.+.+.++|..|+.++.|++...++...+ .+++.-+-.+|.+.++.+++.|+.+|..+.+.+-..+.
T Consensus 149 -~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~ 225 (265)
T 3b2a_A 149 -KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENV 225 (265)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCC
T ss_pred -HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhH
Confidence 356788999998889999999999999999855443322 23455577788888999999999999999987532111
Q ss_pred HHhcCcHHHHHHHH--hcCChHHHHHHHHHH
Q 006494 563 IGRLSFIETLVEII--KNGTPKNKECATSVL 591 (643)
Q Consensus 563 i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~L 591 (643)
+-+.-.+...+.=| ..|.|..+..|-.+-
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 11111222223222 347777777775543
No 113
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.37 E-value=1.2e-05 Score=94.18 Aligned_cols=273 Identities=15% Similarity=0.083 Sum_probs=184.9
Q ss_pred HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHh--hCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC-
Q 006494 361 EEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIAN--NGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD- 433 (643)
Q Consensus 361 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~- 433 (643)
..++.+++.+.+. ++.++..++..+..++..... ..+.. ...++.+...+.++ +..++..|+.+|.++...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3688899999888 899999999999988864211 11211 24567788888876 688999999999887632
Q ss_pred hhh-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-chhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494 434 ETN-KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN 511 (643)
Q Consensus 434 ~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n 511 (643)
..+ .........++.+...+.+.+.++|..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 001111124666777777778899999999999887432211 111112567778887777788899999998888
Q ss_pred hhcCCC-------------------chHHH--HhcCcHHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHH
Q 006494 512 LSINQS-------------------NKSRA--IKAGIIPSLLKLLED-------KALGMVDEALSILQLLASHPEGRNEI 563 (643)
Q Consensus 512 Ls~~~e-------------------n~~~i--v~~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nLa~~~~~~~~i 563 (643)
++.... ....+ .-...++.+++.+.. .+..+...|..+|..++..-. ..+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh
Confidence 875310 00010 113457778888753 234577788888888876522 112
Q ss_pred HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
. ..+++.+...+.+.+...|+.|+.+|..++.+.. +...... ..+++.|+..+.+.++.+|..|..+|..+.+.
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 2 2456666777777889999999999999998654 3322222 45899999999999999999999999988764
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.37 E-value=7.5e-08 Score=86.17 Aligned_cols=57 Identities=19% Similarity=0.450 Sum_probs=50.5
Q ss_pred CCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494 269 VPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY 326 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 326 (643)
.++.+.||||++.+.+| +.++|||+|+..||.+|+.. +.+||.|+.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 35788999999999998 88999999999999999997 57999999999887777654
No 115
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.36 E-value=7e-06 Score=96.02 Aligned_cols=271 Identities=10% Similarity=0.076 Sum_probs=179.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH--
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-- 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k-- 437 (643)
..++.+.+.+.+.++..+..|+..+..++.... ..-.... ...++.|+..+.++++.++..++.+|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 456667777888899999999999999985432 2111111 246888999999999999999999998876321100
Q ss_pred -HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhc--cCChHHHHHHcccCC--hhhHHHHHHHHH
Q 006494 438 -RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGN--LNGIPPLVNLLRYGS--IRGKKDAATALF 510 (643)
Q Consensus 438 -~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~s~~--~~~k~~A~~aL~ 510 (643)
.. .-...++.++..|++. +.++..|+.++.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+|.
T Consensus 448 ~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 00 0123467777777765 8899999999998864311 0122222 345778888887543 678889999999
Q ss_pred HhhcCCCc-hHHHHhcCcHHHHHHHhccC---------------ChhhHHHHHHHHHHHhCChhhHHHHH--hcCcHHHH
Q 006494 511 NLSINQSN-KSRAIKAGIIPSLLKLLEDK---------------ALGMVDEALSILQLLASHPEGRNEIG--RLSFIETL 572 (643)
Q Consensus 511 nLs~~~en-~~~iv~~G~v~~Lv~lL~~~---------------~~~~~~~Al~iL~nLa~~~~~~~~i~--~~g~i~~L 572 (643)
.+....+. ....+. ..++.+++.+.+. ...++..++.+|.+++..-.. .+. -...++.+
T Consensus 526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l 602 (861)
T 2bpt_A 526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLF 602 (861)
T ss_dssp HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHH
T ss_pred HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHH
Confidence 99864333 222222 4677777776531 234566788888888764221 111 12467778
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 573 VEIIKNGTP-KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 573 v~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+.++.+.+. ..++.++.++..++...+....... ..++|.|...+.+.++..+..|..++..+.+
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 888887766 7899998888888764332222111 2478888888877788899999888876654
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.34 E-value=1.2e-05 Score=90.91 Aligned_cols=255 Identities=14% Similarity=0.111 Sum_probs=161.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHh
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR 442 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~ 442 (643)
....++.+.+.+.+.+.-+.-.+..++..+++.... ++..|.+-|.++++.++..|+.+|.++.. ++ +.
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~- 140 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC- 140 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-
Confidence 445556666777777766666777777655443222 34568888888889999999999998863 21 22
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHH
Q 006494 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA 522 (643)
Q Consensus 443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i 522 (643)
...++.+...|++.++.+|..|+.++..+..... .. . .+.++.+..+|.+.++.++..|+.+|..++...+.....
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~-v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--EL-M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GG-G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HH-H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 2357788888888899999999999988864322 11 1 257778888888888889999999999888643221111
Q ss_pred HhcCcHHHHHHHhcc---------------CChhhHHHHHHHHHHHhCCh-hhHH-------------------------
Q 006494 523 IKAGIIPSLLKLLED---------------KALGMVDEALSILQLLASHP-EGRN------------------------- 561 (643)
Q Consensus 523 v~~G~v~~Lv~lL~~---------------~~~~~~~~Al~iL~nLa~~~-~~~~------------------------- 561 (643)
. ...++.++++|.+ .++-.+-..+.+|..++... +...
T Consensus 217 ~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 217 F-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp H-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 1 2566666666643 23444555566666655431 1000
Q ss_pred ----HHHh--------cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHH
Q 006494 562 ----EIGR--------LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA 629 (643)
Q Consensus 562 ----~i~~--------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A 629 (643)
.+.. ..++..|..++.+.++..|..|+.+|..++...+... ......++..+.+.+..+|++|
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHH
Confidence 0000 0245667777777777788888888877776544321 1234455555566666777777
Q ss_pred HHHHHHhhh
Q 006494 630 NSLLQHMSK 638 (643)
Q Consensus 630 ~~lL~~l~~ 638 (643)
..+|..+..
T Consensus 371 lelL~~l~~ 379 (618)
T 1w63_A 371 MELSFALVN 379 (618)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcc
Confidence 777666654
No 117
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.34 E-value=6.7e-06 Score=96.40 Aligned_cols=274 Identities=11% Similarity=0.078 Sum_probs=183.0
Q ss_pred HHHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hh
Q 006494 360 IEEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ET 435 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~ 435 (643)
...++.+++.+.+. +..++..|++.+..+...-..+- ........++.+...+.+.+.+++..++.+|..+... +.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34667777888776 68899999999988764322110 0001112566777788888899999999999887632 22
Q ss_pred hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-------------------ccchhhc--cCChHHHHHHc
Q 006494 436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-------------------NRVMVGN--LNGIPPLVNLL 494 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------------~k~~i~~--~g~i~~Lv~lL 494 (643)
.-........++.++..+.+.+..++..+..++..++.... ....+.. ...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 11112233578888888888888899988888877763210 0001100 23466777777
Q ss_pred cc-------CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHHHh
Q 006494 495 RY-------GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP--EGRNEIGR 565 (643)
Q Consensus 495 ~s-------~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~--~~~~~i~~ 565 (643)
.. ++...++.|+.+|..|+..-+. .++ ..+++.+...+.+.+..+++.|+.+|..++... +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 42 3457888888999888753221 112 245666777777788889999999999999863 2222222
Q ss_pred cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHH--HHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFI--LAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 566 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
...++.++..+.+.++.+|..|+.+|.+++...+... ... -..+++.|+..+.+. ++++..|...|..+.+.
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3578999999998899999999999999997543211 000 124677788877764 89999999999887653
No 118
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.32 E-value=2.2e-05 Score=88.75 Aligned_cols=253 Identities=13% Similarity=0.082 Sum_probs=182.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH-H
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-R 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k-~ 438 (643)
...++.+.+.|.+.++.+|..|+..+..+.+.+++.- .+.++.+..+|.+.|+.++..|+.+|..++.++... .
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3557888888999999999999999999988777543 257778888999999999999999999988654321 1
Q ss_pred HHHhcCChHHHHHHHcc---------------CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc------C
Q 006494 439 HIAREGAIPAIIEILQN---------------GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY------G 497 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~---------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s------~ 497 (643)
.+ ...++.++.+|++ .++..+.....+|..+...+... ....++.|..++.. .
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccch
Confidence 22 2578888888763 36778888888888887543211 12344555565532 2
Q ss_pred ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh
Q 006494 498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK 577 (643)
Q Consensus 498 ~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 577 (643)
+..+...|+.++.++...+ .+. ..++..|..+|.+.++.++..|+..|..++... ..++. .....++..+.
T Consensus 290 ~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~ 360 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLK 360 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHcc
Confidence 3467788888888875432 222 246788899998888889999999999988752 12222 35667888888
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 578 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
+.+..+|..|+.+|..++.... .. .++..|...+.+.++..|+.+...+..+...
T Consensus 361 d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred CCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999987532 11 1356677777777888888888888777653
No 119
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.31 E-value=4.9e-06 Score=89.71 Aligned_cols=265 Identities=10% Similarity=0.064 Sum_probs=176.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChh-hH-H
Q 006494 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDET-NK-R 438 (643)
Q Consensus 363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-~k-~ 438 (643)
+..++..+.+++.++|..|-..|..+.+.+ ..+.+..|+.++.+. +..++..|+..|.|+..... .. .
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 455676777889999999999888765321 123456677777664 67889999999998753210 00 0
Q ss_pred -------HHH---hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHH
Q 006494 439 -------HIA---REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAA 506 (643)
Q Consensus 439 -------~i~---~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~ 506 (643)
.+- ....-..|+..|.+.+..+ ..++.++..++..+.... ...+.++.|+..+.++ ++..+..|+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 000 1112234667777766566 677888888875432110 2367889999999988 889999999
Q ss_pred HHHHHhhcC--CCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCChh-hH-HHHHhcCcHHHHHHHHhcCC
Q 006494 507 TALFNLSIN--QSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQLLASHPE-GR-NEIGRLSFIETLVEIIKNGT 580 (643)
Q Consensus 507 ~aL~nLs~~--~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~~~-~~-~~i~~~g~i~~Lv~lL~~~s 580 (643)
.+|..++.. ++.-... -..+++.++..|.+. +..++..|+.++.++...-. .- ......-.++.+...+.+.+
T Consensus 152 ~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (462)
T ss_dssp HHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence 999999863 2211111 134778888888876 67899999999999775411 10 00011113566666677778
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 581 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
+..+..++.+|..++...+.........++++.++..+.+.++.++..|...+..+.+.
T Consensus 231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 89999999999999876543221111126778788888888999999999988887653
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.1e-07 Score=74.53 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.+++.||||++.+.+||+++|||+ ||+.|+.+ ...||+|+.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 457889999999999999999999 99999964 3789999998865
No 121
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.24 E-value=2e-05 Score=92.18 Aligned_cols=271 Identities=13% Similarity=0.103 Sum_probs=181.8
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhh-H--HHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhccc-C
Q 006494 361 EEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDN-R--ILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSL-D 433 (643)
Q Consensus 361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~-r--~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~-~ 433 (643)
+.++.|++.+.++ ++..+..++..+..+++..... + ... -...++.+...+.++ +.+++..|+.+|.++.. -
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 8999999999998888642211 1 000 112456677788776 78999999999988642 1
Q ss_pred hhhH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--c-CChHHHHHHcccCChhhHHHHHHHH
Q 006494 434 ETNK-RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--L-NGIPPLVNLLRYGSIRGKKDAATAL 509 (643)
Q Consensus 434 ~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~-g~i~~Lv~lL~s~~~~~k~~A~~aL 509 (643)
..+- ........++.+...+.++++++|..++.+|..+..... ..+.. . ..++.++..+.+.+..++..|+.++
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1110 000111246666777778889999999999988864322 11111 1 4566677777788889999999999
Q ss_pred HHhhcCCCc------------------hHHHHhcCcHHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494 510 FNLSINQSN------------------KSRAIKAGIIPSLLKLLEDK-------ALGMVDEALSILQLLASHPEGRNEIG 564 (643)
Q Consensus 510 ~nLs~~~en------------------~~~iv~~G~v~~Lv~lL~~~-------~~~~~~~Al~iL~nLa~~~~~~~~i~ 564 (643)
..++..... -...+ ..+++.++..+.+. +..+...|..+|..++..-. ..+.
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 888764211 01111 45778888888642 23567788888888887422 1111
Q ss_pred hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
...++.+...+.+.+...|+.|+.+|..++.+.. ......+ ..+++.|+..+.+.++.+|..|..+|..+...
T Consensus 368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1345666666677788899999999999997643 3332222 25788888888888999999999888877653
No 122
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5e-07 Score=73.53 Aligned_cols=48 Identities=15% Similarity=0.289 Sum_probs=40.3
Q ss_pred CcccCccCcccccC--------------Ceec-CCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 271 HEFLCPVTLEIMTD--------------PVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d--------------Pv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
++-.|+||++-|.+ ++.+ +|||.|.+.||.+|+.. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999999987 4444 59999999999999997 4799999988753
No 123
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.24 E-value=1.3e-06 Score=106.86 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=184.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
..+..++..+.+.+.++|..|...|.+..+.+...-..-.....++.|+..|.+.++.+|..|+.+|.+++..-.. ..+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 5688899999999999999999999876643211000001123467788899989999999999999998743211 111
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc------chhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhh
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR------VMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLS 513 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs 513 (643)
...++.++..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +++...+..|+.+|..++
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 225667777787877788988888888876322211 01112457889999988 478899999999999988
Q ss_pred cC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHH
Q 006494 514 IN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVL 591 (643)
Q Consensus 514 ~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L 591 (643)
.. ++.-.. .-...++.|+..|.+.+..++..|+.+|..++...... +. ...++.++..|.... ...+..|+.++
T Consensus 163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 52 211111 11346677777787778889999999999999863321 22 356888888886543 35566778888
Q ss_pred HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494 592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639 (643)
Q Consensus 592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~ 639 (643)
..++...+...... -..+++.++..+.+.++.+|+.|...+..+.+.
T Consensus 239 ~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 239 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77776433211100 146899999999888899999999988877653
No 124
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.22 E-value=1.3e-05 Score=79.29 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=136.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494 447 PAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIK 524 (643)
Q Consensus 447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~ 524 (643)
+.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3477888889999999999999888654 2211100 1245778888884 88999999999999999953221111122
Q ss_pred cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc-cCCHHH-H
Q 006494 525 AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG-LNNSYF-I 602 (643)
Q Consensus 525 ~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~-~~~~~~-~ 602 (643)
..+++.|++.+.+.+..+++.|..+|.+++..... ...++.+...+.+.++.+|+.++..|..+. ..++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34899999999998889999999999999886421 136788888898889999999999999954 443331 1
Q ss_pred HHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 603 LAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 603 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
...+ ..++|.|+.++.+..+++|..|...|..+..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 3589999999999999999999999988754
No 125
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=2.9e-07 Score=77.22 Aligned_cols=66 Identities=8% Similarity=0.167 Sum_probs=48.3
Q ss_pred CcccCccCcccccCCeec---CCcccccHHhHHHHHhc----C---CCCCCC--CCcc--cCCCCCCchhhhHHHHHHHH
Q 006494 271 HEFLCPVTLEIMTDPVIV---ATGQTYERESIQRWLNS----N---HKTCPK--TGQI--LDHLSLAPNYALRNLIVQWC 336 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~---~~g~t~~r~~I~~w~~~----~---~~~cP~--~~~~--l~~~~l~pn~~lr~lI~~w~ 336 (643)
+.|.||||++.+.+|+.+ +|||.||+.|+.+|+.. | ...||. |+.. +....+ .+.....++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999875 69999999999999973 3 246999 9887 543221 1233345566665
Q ss_pred h
Q 006494 337 E 337 (643)
Q Consensus 337 ~ 337 (643)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.19 E-value=8.7e-07 Score=68.53 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCcccCccCcccccCCeec--CCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 270 PHEFLCPVTLEIMTDPVIV--ATGQT-YERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~--~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
+++..|+||++-..|++++ ||||. ||..|+.+|+.. +..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999988 99999 899999999986 578999999875
No 127
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.13 E-value=1.1e-05 Score=77.42 Aligned_cols=221 Identities=12% Similarity=0.047 Sum_probs=161.2
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccch
Q 006494 404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVM 480 (643)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~ 480 (643)
.+..|..+|...|+.++.+++.+|..+-.. ..-+..+++ ..++.++.++++.+..+...|..+|..|-.... ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 456688999999999999999999998754 333333333 479999999999999999999999998854322 2222
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
+. ..+.+|.+++.++++-....|+..+..|...... -+++..+.+++.+.+.+++..++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 22 2568899999999999999999999988332222 235667888898899999999999999999865433
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH--HHHHHHHcCcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY--FILAALQYGVYEHLVEIT-RCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~ 637 (643)
..+ .+++.-+-++|++.++..++.|+.+|..+.+..-. ....+ .++....-.+. ..|.|..+.+|..+-..+-
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 222 24666777889999999999999999999886421 11111 12222333344 5789999999988766553
No 128
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.12 E-value=1.4e-06 Score=67.19 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=42.3
Q ss_pred CcccCccCcccccCCeec--CCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDPVIV--ATGQT-YERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~--~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
.+..|+||++-.+|++++ ||||. ||..|+.+|+.. +..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 456899999999999988 99998 999999999986 478999999875
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.07 E-value=2.3e-06 Score=73.18 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=40.3
Q ss_pred CcccCccCcccccCC------------------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDP------------------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dP------------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||+|++++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999987 34789999999999999987 689999998764
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.06 E-value=9.7e-06 Score=80.11 Aligned_cols=180 Identities=12% Similarity=0.115 Sum_probs=134.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccCh--hhHHHHH
Q 006494 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDE--TNKRHIA 441 (643)
Q Consensus 366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~--~~k~~i~ 441 (643)
+.+.+.+.++..|..|+..|..+....+... ..+ ...++.|...+. +.+..++..|+.+|..|+..- .....
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-- 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-- 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH--
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH--
Confidence 6677889999999999999998886532210 000 123567888884 889999999999999888421 11111
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC-Cc--
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SN-- 518 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-en-- 518 (643)
-...++.|+..+++.+..+|..|..+|..+...... ...++.|...+++.++.++..++..|..+.... ..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 233788999999999999999999999998653221 236788889999999999999999999965432 21
Q ss_pred hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
-...+ ...+|.|+.+|.+.+..+...|..++..++..
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12222 35899999999989999999999999988865
No 131
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.98 E-value=1.2e-06 Score=70.80 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=40.2
Q ss_pred CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.++..|+||++.+.|||++||||. ||..|+.+| ..||.|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 356789999999999999999999 999999887 399999998764
No 132
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.96 E-value=1.4e-06 Score=90.39 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=41.8
Q ss_pred CCCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
+.+++.||||++.+.+||++||||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3467999999999999999999999 999999988 689999998763
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.93 E-value=3e-05 Score=94.73 Aligned_cols=229 Identities=9% Similarity=0.064 Sum_probs=159.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH-
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK- 437 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k- 437 (643)
....++.+++.|.+.++.+|..|+..|..++..... ..+ ...++.|+..|.+++..++..|+.+|..++..-...
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 456788899999999999999999999999864433 111 124677888888888889988888888775321110
Q ss_pred -----HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhh--ccCChHHHHHHcccCChhhHHHHHHHH
Q 006494 438 -----RHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVG--NLNGIPPLVNLLRYGSIRGKKDAATAL 509 (643)
Q Consensus 438 -----~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~s~~~~~k~~A~~aL 509 (643)
..-.....++.|+..+. ++++..+..|..++..++..... .+. -...++.|+..+.+.+..++..|+.+|
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 01112346888889998 47889999999999988632111 111 134667777788888889999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhcCChHHHHH
Q 006494 510 FNLSINQSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKNGTPKNKEC 586 (643)
Q Consensus 510 ~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~ 586 (643)
..++...+.. + -...++.|++.|.+.. ......++.++..++..... .+.. ...++.++..+.+.++..|+.
T Consensus 200 ~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 200 GHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9998754432 1 2346888888886642 34566677777777764211 2221 367899999998888889999
Q ss_pred HHHHHHHhccCC
Q 006494 587 ATSVLLELGLNN 598 (643)
Q Consensus 587 A~~~L~~L~~~~ 598 (643)
|+.++..++...
T Consensus 275 a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 275 CIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHC
Confidence 999888887653
No 134
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.90 E-value=0.00058 Score=77.12 Aligned_cols=254 Identities=11% Similarity=0.080 Sum_probs=162.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh--cCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL--SYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
-.+..+.+.|.+.++-++.-|++.+.++. .++ +++ ..++.+.++| .+.++.++..|+.++..+..... .
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVG--SRE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence 45667888899999999999999999885 333 222 3567788999 88899999999999988764211 1
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc----cC-------------Chhh
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR----YG-------------SIRG 501 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----s~-------------~~~~ 501 (643)
.+-..++++.+.++|.+.++.++.+|+.++..++..+.. .+ ...++.+++.|. .+ ++-.
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 111347999999999988999999999999998753321 11 123444444332 22 3445
Q ss_pred HHHHHHHHHHhhcCC--CchHHHHhcCcHHHHHHHhcc---------CCh--hhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494 502 KKDAATALFNLSINQ--SNKSRAIKAGIIPSLLKLLED---------KAL--GMVDEALSILQLLASHPEGRNEIGRLSF 568 (643)
Q Consensus 502 k~~A~~aL~nLs~~~--en~~~iv~~G~v~~Lv~lL~~---------~~~--~~~~~Al~iL~nLa~~~~~~~~i~~~g~ 568 (643)
+...+..|..++... +.+..+.+ .+..++..+.+ .+. .+.-+|+.++..+...++... .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 556666666655422 12222322 33333332211 122 567777777777764433222 35
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHhh
Q 006494 569 IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l~ 637 (643)
+..|..+|.+.++..|..|+..|..++...+.. . +. ......++..+. +.+..+|.+|..+|..+.
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 667777887777888888888888888765421 1 11 234556666666 677777888887777665
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.86 E-value=0.0005 Score=77.64 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=169.0
Q ss_pred HHHHHHHHHhh--cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494 360 IEEICSLIQNL--SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 360 ~~~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
...++.+.+.| .+.++.+|..|+..+..+.+.+++.-. ..+.++.|..+|.+.|+.++.+|+.+|..++.++.
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence 35667777888 788999999999999998876664321 24789999999999999999999999988864321
Q ss_pred HHHHhcCChHHHHHHHc----cC-------------CHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHc----
Q 006494 438 RHIAREGAIPAIIEILQ----NG-------------TNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLL---- 494 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL---- 494 (643)
..+ ...++.+++.|. .+ ++-.+.....+|..+...+ +.+..+. +.+..++..+
T Consensus 220 ~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 220 EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP 295 (621)
T ss_dssp HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence 111 123454554443 22 4667766777776665432 1222221 1233333222
Q ss_pred -----ccCCh--hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcC
Q 006494 495 -----RYGSI--RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLS 567 (643)
Q Consensus 495 -----~s~~~--~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g 567 (643)
++.+. .+...|+.++..+...+ .+.. .++..|..+|.+.++.++-.|+..|..++........+ ..
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence 11122 67777888888886322 2222 36778888888788889999999999998864322233 24
Q ss_pred cHHHHHHHHh-cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 568 FIETLVEIIK-NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 568 ~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
....++..|+ +.+..+|..|+.+|..++.. .... .++.-|...+...+...++.+..-+..+.
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5677888888 88889999999999999863 3332 24556667777777777777766666554
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.82 E-value=3.5e-06 Score=75.01 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=91.4
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV 481 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 481 (643)
...++.|+.+|+++++.++..|+.+|.++.. ..++.|+..|++.++.+|..|+.+|.++.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--------- 70 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------- 70 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC---------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC---------
Confidence 3567889999999999999888888876532 13789999999999999999999998774
Q ss_pred hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHH
Q 006494 482 GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQL 552 (643)
Q Consensus 482 ~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~n 552 (643)
...+++.|+.+|.+.++.++..|+.+|.++. ...+++.|+.++.+.+..+...|+.+|..
T Consensus 71 -~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 -DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2346899999999999999999999999875 23468899999988888888888887754
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.6e-05 Score=64.15 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCcccCccCcccc--cCCeecCCc-----ccccHHhHHHHHhcC-CCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIM--TDPVIVATG-----QTYERESIQRWLNSN-HKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m--~dPv~~~~g-----~t~~r~~I~~w~~~~-~~~cP~~~~~l~~ 319 (643)
.++..|+||++-+ .+|++.||+ |.|.+.||.+|+... ..+||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567899999766 479999996 999999999999864 4689999998874
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00014 Score=72.36 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=134.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-cccc-ccccchhhc-cCChHHHHHHc-ccCChhhHHHHHHHHHHhhcC---CCchHH
Q 006494 449 IIEILQNGTNEARENSAAALFS-LSML-DENRVMVGN-LNGIPPLVNLL-RYGSIRGKKDAATALFNLSIN---QSNKSR 521 (643)
Q Consensus 449 Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~---~en~~~ 521 (643)
+...+.+.++..|..|...|.. +... .+......+ ...+..|...+ ++.+..++..|+.+|..|+.. ++....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999988888 7632 111110122 24577888888 677888999999999999852 222212
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH--hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG--RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.. .-++|.+++.+.+....+++.+..+|..++.+-+- .... =..+++.|...|.+.++..|+.++.+|..++...+
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 23789999999988888999988888888874211 0010 01467788888988899999999999998886544
Q ss_pred ---HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 600 ---YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 600 ---~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
......+...++|.|..++.+.++.+|..|..+|..+.+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222222325799999999999999999999999988764
No 139
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.6e-05 Score=62.10 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.++..|+||++-..+||++||||. ||..|+.. ...||+|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 467899999999999999999999 99999984 4789999998764
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.74 E-value=0.00044 Score=70.40 Aligned_cols=149 Identities=12% Similarity=0.032 Sum_probs=123.5
Q ss_pred HHHHHHcccCChhhHHHHHHHHHH-hhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh-
Q 006494 488 PPLVNLLRYGSIRGKKDAATALFN-LSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR- 565 (643)
Q Consensus 488 ~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~- 565 (643)
..++.-|.+++.+.++.++.-|.. +.........++..+++..|+.+..+.+...+..++.+|.+|-.+.+|...+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 445556677888889999999998 666888899999999999999999888889999999999999999999988885
Q ss_pred cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH--------cC--cHHHHHHHHh---hCCHHHHHHHHHH
Q 006494 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ--------YG--VYEHLVEITR---CGTNRGQRKANSL 632 (643)
Q Consensus 566 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~--------~g--~i~~L~~ll~---~g~~~~k~~A~~l 632 (643)
...|..+..++.+....+...|+.+|..+|..++.....+.+ .| -.+.|+.+++ +++...+-+|..+
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 468999999999878888999999999999887543333322 11 3778899997 7788999999988
Q ss_pred HHHh
Q 006494 633 LQHM 636 (643)
Q Consensus 633 L~~l 636 (643)
+--+
T Consensus 281 IN~l 284 (339)
T 3dad_A 281 INKT 284 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.74 E-value=5.3e-06 Score=73.83 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=89.1
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR 521 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~ 521 (643)
....++.++..|++.++.+|..|+.+|..+. . ..++.|+.+|.+.++.++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3456788888888877777766666665442 1 237999999999999999999999988752
Q ss_pred HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494 522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE 593 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 593 (643)
..+++.|+.+|.++++.+...|+.+|.++.. ..+++.|..++.+.++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2468999999999999999999999998762 3468899999988889999999888754
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.69 E-value=9.6e-05 Score=73.49 Aligned_cols=187 Identities=6% Similarity=0.091 Sum_probs=131.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hhhhChhhHHHHHh-hCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCh---hhH-H
Q 006494 366 LIQNLSSSQLNIKRDSVMKIRM-LSKENPDNRILIAN-NGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDE---TNK-R 438 (643)
Q Consensus 366 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~k-~ 438 (643)
+-+.+.+.+|..|..|+..|.. +....+.......+ ...+..|...+ +..+..++..|+.+|..|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456688999999999999999 87443221100001 12356677888 6788999999999999987321 111 1
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh--ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG--NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
.. .-.++.+++.+++....++..+..++..+...-+- .... -...++.|+..|++.++.+|..++.+|..+....
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 11 12588899999888888988888888887642211 1111 1236788888999999999999999999888643
Q ss_pred Cch-HH---HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 517 SNK-SR---AIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 517 en~-~~---iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
+.. .. .+....+|.|.+++.+.++.+++.|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 22 2225789999999999999999999999988775
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.66 E-value=6.2e-06 Score=71.51 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=0.0
Q ss_pred ccCccCcccccCCee------------------cCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 273 FLCPVTLEIMTDPVI------------------VATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~------------------~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
-.|+||++-|.+|.+ .+|||.|++.||.+|+.. +.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 479999999988532 489999999999999997 689999998754
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.66 E-value=0.00078 Score=71.92 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=155.6
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcC--ChHHHHHHHcc---------------C--CHHHHHHHHH
Q 006494 407 PLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREG--AIPAIIEILQN---------------G--TNEARENSAA 466 (643)
Q Consensus 407 ~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~Aa~ 466 (643)
.++..|.. .+.+.+.-++.+|..|...+..|..+.+.+ .+++++.+++. + ....+.++.-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34555554 245667778888888888899998887543 46777665541 1 2556889999
Q ss_pred HHHHccccccccchhhccCCh--HHHHHHcccC-ChhhHHHHHHHHHHhhcCCC-ch----HHHH-hcCcHHHHHHHhcc
Q 006494 467 ALFSLSMLDENRVMVGNLNGI--PPLVNLLRYG-SIRGKKDAATALFNLSINQS-NK----SRAI-KAGIIPSLLKLLED 537 (643)
Q Consensus 467 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e-n~----~~iv-~~G~v~~Lv~lL~~ 537 (643)
+++-||+.++....+...+.. +.|+.+++.. ...+.+-++.+|.||..... +. ..++ ..++ +++++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998877777665533 6677777665 67888999999999987542 22 2233 3344 556666654
Q ss_pred ---CChhhHHHHHHHHHHH-------hCC---------------hhh---------HHHHHhc--CcHHHHHHHHhc---
Q 006494 538 ---KALGMVDEALSILQLL-------ASH---------------PEG---------RNEIGRL--SFIETLVEIIKN--- 578 (643)
Q Consensus 538 ---~~~~~~~~Al~iL~nL-------a~~---------------~~~---------~~~i~~~--g~i~~Lv~lL~~--- 578 (643)
.++++.+..-.+...| ++. |.. ...+.+. ..+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 4555554433322222 211 111 1122222 357889999974
Q ss_pred -------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 579 -------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 579 -------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.++..-.-|+.=+..++++.|..+..+.+.|+-..++.++.+.++.+|..|...++.+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23555566677788888888877777888899999999999999999999998887654
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.62 E-value=0.00099 Score=67.79 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~ 439 (643)
.-.+..++..|.+++......++..|+.+-..+.+.-..+++.+++..|++.....+..+|..++++|.+|-.+......
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 35677888888888899999999999985446777888888889999999999999999999999999999988888877
Q ss_pred HH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhc--------cC--ChHHHHHHcc---cCChhhHHH
Q 006494 440 IA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGN--------LN--GIPPLVNLLR---YGSIRGKKD 504 (643)
Q Consensus 440 i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~g--~i~~Lv~lL~---s~~~~~k~~ 504 (643)
++ ...+|..|..++.+.+..+...|..+|..+....+ +...+.+ .| -+..|+.+|+ +++.+.+.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 76 55689999999998888889999999999976554 3222221 11 3788999997 678899999
Q ss_pred HHHHHHHhhcCCCc---hHHHH----hcCcHHHHHHHhcc
Q 006494 505 AATALFNLSINQSN---KSRAI----KAGIIPSLLKLLED 537 (643)
Q Consensus 505 A~~aL~nLs~~~en---~~~iv----~~G~v~~Lv~lL~~ 537 (643)
|+..|-.+....+. +..++ +.|.=..+.+.+..
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 98887766553332 22333 34544555665654
No 146
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.058 Score=49.82 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=148.0
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcc-cChhh
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLS-LDETN 436 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs-~~~~~ 436 (643)
++..+..++..|..+-|.+|..|+..+..+++.-++....+. ..|+.+++ +...........++..++ ..++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 567899999999999999999999999999988877665554 34666654 444444334445555554 22322
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
.. +.+|.+..-.+-|++.++.+.+.+|..++..+.. . -.+.+.-+..++.+.+..-+ +.+|.-++.-.
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l--~~~v~rdi~smltskd~~Dk---l~aLnFi~alG 172 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--L--MASIVRDFMSMLSSKNREDK---LTALNFIEAMG 172 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--H--HHHHHHHHHHHTSCSSHHHH---HHHHHHHHTCC
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--H--HHHHHHHHHHHhcCCChHHH---HHHHHHHHHHh
Confidence 21 2456666666779999999999999988753221 1 12456778888887774433 44455556667
Q ss_pred CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
+|..+.+.. .+|.|+.+|.+.+.-+...|+.+|.+|+.. +..|.. |...++-+.+.|...+......|..|.
T Consensus 173 en~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 173 ENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp TTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 777776654 789999999999988999999999999996 444433 334455567778777777666666554
Q ss_pred c
Q 006494 596 L 596 (643)
Q Consensus 596 ~ 596 (643)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.39 E-value=0.013 Score=68.53 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=177.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh---hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc--cChh
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP---DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS--LDET 435 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~---~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~ 435 (643)
+.+..|.+.+...... ..|+..+..++.... ..-..+. +.++.++..+.+.+..++..|-.++..+. .++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4566666666543222 677777877774432 2222333 57888888888888888887776666553 2332
Q ss_pred hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494 436 NKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNL 512 (643)
Q Consensus 436 ~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL 512 (643)
.. ...+|.|+..|++. .+..+..|..++..|+... ..+++. ...||.+...+.+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 22 23578899888765 6999999999999998543 445544 57889999999888999999999999999
Q ss_pred hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL 592 (643)
Q Consensus 513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 592 (643)
|..-+|+.. ...+|.|++.+.+++ -+.+++..|..-..-.+.-.-.. +=.+|.|.+=|...+...+..++.+..
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~--~~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPT--EVPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTT--HHHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChh--hhHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 986666543 457899999998663 25555544433322222111111 113455555566667888899999999
Q ss_pred HhccC--CHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhhcc
Q 006494 593 ELGLN--NSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSKRE 640 (643)
Q Consensus 593 ~L~~~--~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~~~ 640 (643)
|+|.- ++.....++ ...+|-|.+.... ..|++|+.|...+..|.+..
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 99974 555444433 4677888776654 48999999999999887643
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.32 E-value=0.002 Score=66.98 Aligned_cols=264 Identities=10% Similarity=0.006 Sum_probs=143.2
Q ss_pred CCchhhhHHHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh
Q 006494 322 LAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN 401 (643)
Q Consensus 322 l~pn~~lr~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~ 401 (643)
..+|..+|.++--+.... ++.... ..-.+..+.+.+.++++-++-.|++.+..+.. ++.-..
T Consensus 78 ~s~d~~lKrLvYLyl~~~----~~~~~e---------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~--- 139 (355)
T 3tjz_B 78 QSNDPTLRRMCYLTIKEM----SCIAED---------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA--- 139 (355)
T ss_dssp GCCCHHHHHHHHHHHHHH----TTTSSC---------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH---
T ss_pred cCCCHHHHHHHHHHHHHh----CCCHHH---------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH---
Confidence 356888999876555422 111110 12467788999999999999999999998863 332222
Q ss_pred hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV 481 (643)
Q Consensus 402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 481 (643)
..+.+.+.|.+.++.++..|+-+...|.... .+. + .++++.+-+++.+.++-++.+|.++|..+...+.
T Consensus 140 --l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----- 208 (355)
T 3tjz_B 140 --IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----- 208 (355)
T ss_dssp --HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence 3456778888999999999998888876332 222 2 2689999999999999999999999999875431
Q ss_pred hccCChHHHHHHcccC---ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494 482 GNLNGIPPLVNLLRYG---SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE 558 (643)
Q Consensus 482 ~~~g~i~~Lv~lL~s~---~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~ 558 (643)
.++..|+.-+..+ ++-.+..-+..+..++...+ .-.....++.|...|.+.++.++-+|+.++..+...+.
T Consensus 209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA 282 (355)
T ss_dssp ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence 1455666666554 23222222233322222110 01223456667777777888899999999988866322
Q ss_pred hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHH
Q 006494 559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA 629 (643)
Q Consensus 559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A 629 (643)
. .. ..++..|..++.+.++..|-.|+..|..+....|+..+. .-.-+..++.+++.-+.-.|
T Consensus 283 ~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 283 K---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred H---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 1 11 245677778888888999999999999998877754432 23344455555554443333
No 149
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.24 E-value=0.019 Score=66.57 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=152.0
Q ss_pred HHHHHHHhhcCCC--------HHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494 362 EICSLIQNLSSSQ--------LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD 433 (643)
Q Consensus 362 ~i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 433 (643)
.+..|...|.+.+ +.++..|+-.|....-.+. + ..+++.|..+|...+....+.|+.+|..+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4445555554433 3455556656655432111 1 11356678888777666666666666654333
Q ss_pred hhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc-CChhhHHHHHHHHHH
Q 006494 434 ETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFN 511 (643)
Q Consensus 434 ~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~n 511 (643)
..|.. ++..|+..+. +.+..++..++-.|..+.. ++...++.++..|.. .++-++..|+.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22222 3455666554 4467778778877777643 444577899988865 467777777777765
Q ss_pred hhcCCCchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH-hcCChHHHHHHHH
Q 006494 512 LSINQSNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII-KNGTPKNKECATS 589 (643)
Q Consensus 512 Ls~~~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~ 589 (643)
-+...+|.. +|+.|+..+. +.+..++..|+..|+.++.... ..++.++++| +++++.+|..|+.
T Consensus 569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555543 3555666664 4566788888888888776532 4567777754 5688999999999
Q ss_pred HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
+|..+|.+++. ..++..|..++.+.++.+++.|...|-.+.-
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 99999987653 1356677888888889999888888877653
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.15 E-value=0.0072 Score=64.56 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=147.9
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhC--ChHHHHHHhcC---------------C--CHHHHHHHHH
Q 006494 366 LIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNG--GIRPLVQLLSY---------------P--DSKIQEHTVT 425 (643)
Q Consensus 366 Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~a~~ 425 (643)
++..|.. .+.+.+.-++..+..|. ..++.|..+.+.+ .++.++.+++. + ...++.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4444544 23455667888888888 4678888887543 36666544331 1 3566899999
Q ss_pred HHHhcccChhhHHHHHhcCCh--HHHHHHHccC-CHHHHHHHHHHHHHcccccc-c-cc----hhhccCChHHHHHHccc
Q 006494 426 ALLNLSLDETNKRHIAREGAI--PAIIEILQNG-TNEARENSAAALFSLSMLDE-N-RV----MVGNLNGIPPLVNLLRY 496 (643)
Q Consensus 426 ~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~-k~----~i~~~g~i~~Lv~lL~s 496 (643)
+++-|+.+++....+...+.. +.|+.+++.. -..+...+.+++.||..... . .. .+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999999888778766533 5666777754 46677778999999975441 1 11 2222333 456666654
Q ss_pred C---ChhhHHHHHHH-------HHH---------------hhcCCCchH-HHH--------h--cCcHHHHHHHhcc---
Q 006494 497 G---SIRGKKDAATA-------LFN---------------LSINQSNKS-RAI--------K--AGIIPSLLKLLED--- 537 (643)
Q Consensus 497 ~---~~~~k~~A~~a-------L~n---------------Ls~~~en~~-~iv--------~--~G~v~~Lv~lL~~--- 537 (643)
. +++...+--.. +.. |..+|..+. .+. + -.++..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 43333322111 111 222333332 332 2 2367889999973
Q ss_pred -------CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494 538 -------KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL 596 (643)
Q Consensus 538 -------~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 596 (643)
.++.+..-|+.=++.++.+ |.||..+-+.|+=..+++++.+.++++|.+|+.++-.+-.
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2455666677778888886 8999888888998899999999999999999998876543
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.14 Score=47.39 Aligned_cols=210 Identities=14% Similarity=0.172 Sum_probs=140.8
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccch
Q 006494 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVM 480 (643)
Q Consensus 403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~ 480 (643)
..+..++.+|..+-|.+|.+|+..+.+++. .++....+ +..|+.+++ +.....-+..+.++..++.... .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 467789999999899999999999999874 34333332 333445544 4566665667777777763221 1
Q ss_pred hhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG 559 (643)
Q Consensus 481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~ 559 (643)
++ .+.+|.+..=.+-|++..+.+-..+|..+.. +|+-- .+++.-+..++.+++..-.-.|+..+..+..+
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alGen--- 174 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--- 174 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---
Confidence 11 1355666666677899999999999998876 43322 34566788889877754455555555554443
Q ss_pred HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 560 RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 560 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
...-+ .-.+|.|..+|.+.++.+|..|+.+|.+++..++..+..+ ..-++-+.+.++-++.+...-|..+
T Consensus 175 ~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 22222 2579999999999999999999999999999998854432 2233334555666666665555443
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.04 E-value=0.011 Score=61.48 Aligned_cols=245 Identities=10% Similarity=0.029 Sum_probs=149.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA 441 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~ 441 (643)
.....++.+.+.+...+.-.--.+..+++..++. + -++..|.+=+.++++-++-.|+++|.++...+-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 4455677888888888877777777887653331 1 25677888889999999999999999976443211
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494 442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR 521 (643)
Q Consensus 442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~ 521 (643)
...+.+...|.+.++.+|..|+-+...|.... .+.+ .+.++.+-+++.+.++.+..+|+.+|+.++.+.. .
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~- 209 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L- 209 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H-
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H-
Confidence 13445666677889999999998888876433 2222 2688999999999999999999999999986531 1
Q ss_pred HHhcCcHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 522 AIKAGIIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 522 iv~~G~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
++..|+..+... ++-.+-..+.++..++...+.. .....+..+..+|++.++.+.-.|+.++..+...+
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 445556665442 2222222233332332221001 12345667777788888999999999988876533
Q ss_pred HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494 599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
... -..++..|..++.+.++..|=.|...|..+..
T Consensus 282 ~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 282 AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 221 13456777788888888888777776665543
No 153
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00067 Score=53.52 Aligned_cols=47 Identities=15% Similarity=0.389 Sum_probs=37.8
Q ss_pred ccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCCCCcccCC
Q 006494 273 FLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPKTGQILDH 319 (643)
Q Consensus 273 f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~ 319 (643)
-.|+||.+++..=.. ..|||.|...||.+||... ..+||.|+.+...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 469999999874332 2699999999999999853 3789999988753
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.76 E-value=0.008 Score=70.34 Aligned_cols=262 Identities=14% Similarity=0.103 Sum_probs=172.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh----h
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET----N 436 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~ 436 (643)
..+..+++.++..+.+.+..++..+..+...+...+ ....+.+..|.+.+...... +.|+.++..|+.... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 455567777776555666777777877764331111 11125667777877765333 888888888874332 2
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhc
Q 006494 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSI 514 (643)
Q Consensus 437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~ 514 (643)
-..++ +.++.++..+.+....+|..|..++..+.. .+.+ .+ ...+|.|+..|.+. ....|..|+.+|..|+.
T Consensus 90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 12222 468888888877777888877777666642 1111 11 45678999888765 68999999999999986
Q ss_pred CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
.....-...=...||.+.+.+.+..+++...|..++..+|..-+++.. ...+|.|++.+.+.+. -..++..|..-
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 442222222256889999999888889999999999999886544422 2579999999976532 33445555433
Q ss_pred ccC---CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhccCC
Q 006494 595 GLN---NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHI 642 (643)
Q Consensus 595 ~~~---~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~e~ 642 (643)
..- ...... =.+|.|.+=+...+...+|+++-+..||++--+-
T Consensus 239 tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 239 TFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp CCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred eeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 321 111111 1366666777777889999999999999986543
No 155
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.64 E-value=0.0017 Score=48.99 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=39.7
Q ss_pred CcccCccCcccccCCeecCCc--c---cccHHhHHHHHh-cCCCCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTDPVIVATG--Q---TYERESIQRWLN-SNHKTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g--~---t~~r~~I~~w~~-~~~~~cP~~~~~l~ 318 (643)
++-.|.||++-..+|.+.||. + .|-+.|+.+|+. .++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 445799999888888888864 2 799999999998 45788999998765
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.062 Score=53.70 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=121.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhChhhH--HHHH-hh-CChHHHHHHhcCCCHHHHHHHHHHHHhcccCh----hhH
Q 006494 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNR--ILIA-NN-GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE----TNK 437 (643)
Q Consensus 366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~i~-~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~----~~k 437 (643)
|-+.|.+.+|..|..|+..+..+....+... .... .. ...+.+-+.+.+.+..++..++.+|..+...- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5578999999999999999987764332211 1111 12 24556677888889999999999888765321 111
Q ss_pred H--HHHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494 438 R--HIAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 438 ~--~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~ 514 (643)
. ...-...++.|+.- |.++...++..+..++..+....... ...++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 12234467777765 66777888888888877765322111 1134666677788899999999998888754
Q ss_pred C--CCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 515 N--QSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 515 ~--~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
. ... .....-..+++.+..+|.+.++.+.+.|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 111 11111123455677788889999999999999888775
No 157
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.25 E-value=0.018 Score=61.96 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=155.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh--HHHHHhhCChHHHHHHhcC-------C---CHHHHHHHHHHHHh
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN--RILIANNGGIRPLVQLLSY-------P---DSKIQEHTVTALLN 429 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~--r~~i~~~g~i~~Lv~lL~~-------~---~~~~~~~a~~~L~n 429 (643)
....|+..|-+..|++|-.|+-.||.+.+..... |....+....-.|+.+|.- + -..+++.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 6678889999999999999999999887654321 1100001222233333321 1 24678888888777
Q ss_pred cccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHH
Q 006494 430 LSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATA 508 (643)
Q Consensus 430 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~a 508 (643)
+ .+=... ...+..++..+..+.+++|..+.-.|.++ +..+.. .++++.++.-|.+.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 6 432111 23344444445677899999888888888 222222 4667888888888899999999999
Q ss_pred HHHhhcCCCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006494 509 LFNLSINQSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC 586 (643)
Q Consensus 509 L~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~ 586 (643)
|.-++ .++.... ++..+-+.|.+- -....-..+..|+.|++++.. .......+|.|..+++.....+|..
T Consensus 323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99888 2222222 233344444431 122345567777887777631 1122367999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHH-HHHhhCCHHHHHHHHHHHH
Q 006494 587 ATSVLLELGLNNSYFILAALQYGVYEHLV-EITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~ 634 (643)
++.+|..+. ++ .++..+. .++-..++.+++.+..+-+
T Consensus 395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998877 22 2333333 4667778888888877764
No 158
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.08 E-value=0.0011 Score=67.11 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=38.5
Q ss_pred CcccCccCcccccC----Cee----cCCcccccHHhHHHHHhcCC----------CCCCCCCcccC
Q 006494 271 HEFLCPVTLEIMTD----PVI----VATGQTYERESIQRWLNSNH----------KTCPKTGQILD 318 (643)
Q Consensus 271 ~~f~Cpi~~~~m~d----Pv~----~~~g~t~~r~~I~~w~~~~~----------~~cP~~~~~l~ 318 (643)
....|+||+..+.+ |.. ..|||.|...||.+||.... .+||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44579999999987 533 36999999999999997421 35999999876
No 159
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.02 E-value=0.87 Score=52.90 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=132.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHH
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKR 438 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~ 438 (643)
...+..|...|...+...+..|+..|..+.-. ..+.. ++..|+..+ ...+..++..++..|..+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 34566666767665555555555555544211 11211 234444443 344566777777777654322
Q ss_pred HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCC
Q 006494 439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~ 516 (643)
+...++.+++.|.. .++-+|..++-++.--.... +...+|+.|++.+.++ +..++..|+.+|..+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGT------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 34467888888875 57778877666664332211 2234678788777554 6788899999998877644
Q ss_pred CchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 517 SNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 517 en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
+ ..++.++++|. +.++.++..|..+|..++...... .++..|..++++.++.++.+|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 35677777665 478889999999999988754332 35667788888899999999999999988
Q ss_pred cCC
Q 006494 596 LNN 598 (643)
Q Consensus 596 ~~~ 598 (643)
.+.
T Consensus 676 ~gt 678 (963)
T 4ady_A 676 IQQ 678 (963)
T ss_dssp TTC
T ss_pred cCC
Confidence 764
No 160
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.01 E-value=0.0025 Score=52.47 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=37.6
Q ss_pred CccCcccccCCe-ecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 275 CPVTLEIMTDPV-IVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 275 Cpi~~~~m~dPv-~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
||+|.-....-. ++||+|.||..|+..|...+..+||.|+.++..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 777766555443 689999999999999999888999999998764
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.72 E-value=0.56 Score=45.65 Aligned_cols=230 Identities=16% Similarity=0.206 Sum_probs=148.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHH-------HhcCC-----CHHHHHHHHHHHH
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQ-------LLSYP-----DSKIQEHTVTALL 428 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~-------lL~~~-----~~~~~~~a~~~L~ 428 (643)
.+-.++..|.. ++.|..|+.+|..--...++--..+ ...|.+..|+. .++.+ ...-..+|+..|-
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 34555655654 3456777666654221112222222 12465655543 22221 1223456777777
Q ss_pred hcccChhhHHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHcccCChhh
Q 006494 429 NLSLDETNKRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLLRYGSIRG 501 (643)
Q Consensus 429 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~s~~~~~ 501 (643)
-++.+++.|..+.+++..--|..+|...+ +-.|..+.+++..|...++ .-..+.+.+.||..+..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 78899999999999887777778886543 4578899999999986554 3444556889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHH-------Hh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHHHhc--CcH-
Q 006494 502 KKDAATALFNLSINQSNKSRA-------IK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGRNEIGRL--SFI- 569 (643)
Q Consensus 502 k~~A~~aL~nLs~~~en~~~i-------v~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~--g~i- 569 (643)
|.-|..++..+..++..-..+ -. ..++..++.-+ .++++.+..+.+.+-..|+.++.+|+++... ..+
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 999999998876655443222 22 22344444444 3478889999999999999999999998652 111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHh
Q 006494 570 -ETLVEIIKNGTPKNKECATSVLLEL 594 (643)
Q Consensus 570 -~~Lv~lL~~~s~~~ke~A~~~L~~L 594 (643)
..+..+++ +++..+.+-...+.++
T Consensus 242 d~tf~~~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQVLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 11223333 5677777766666655
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.41 E-value=0.076 Score=62.90 Aligned_cols=252 Identities=9% Similarity=0.063 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc------CCCHHHHHHHHHHHHhcccChhhHHHHHhc-----C
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS------YPDSKIQEHTVTALLNLSLDETNKRHIARE-----G 444 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~-----g 444 (643)
..+..|...|..++.... ..+.. ..++.+-..+. +.++..++.|+.++..++..-..+..-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456667777777775433 11111 12334444454 567889999999998886431100000000 1
Q ss_pred ChH----HHHHHHccC---CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494 445 AIP----AIIEILQNG---TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517 (643)
Q Consensus 445 ~i~----~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e 517 (643)
..+ .++..|.+. .+.+|..|++++..++..- .+.. -...++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 223334555 7889999999999987532 1111 13467888888888788999999999999987422
Q ss_pred ---------chHHHHh--cCcHHHHHHHhccCC---h--hhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc-
Q 006494 518 ---------NKSRAIK--AGIIPSLLKLLEDKA---L--GMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN- 578 (643)
Q Consensus 518 ---------n~~~iv~--~G~v~~Lv~lL~~~~---~--~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~- 578 (643)
.+..+.. ...++.|+.++.... . ...+.++.+|..++.. .+... .. ...++.|...+..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHH
Confidence 2332321 335555566665431 1 1234556666555442 11111 11 1244555555532
Q ss_pred ----CChHHHHHHHHHHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494 579 ----GTPKNKECATSVLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637 (643)
Q Consensus 579 ----~s~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~ 637 (643)
.++..+..++.+|..++.. +++.... ....++|.+..++.+........+..++..+.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 2445566677788777765 3333332 33457888888887665555555666555443
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.13 E-value=0.18 Score=49.16 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHhhcCCCc----hHHHHh-cCcHHHHHHHhccC-----Ch-------hhHHHHHHHHHHHhCChhhHH
Q 006494 499 IRGKKDAATALFNLSINQSN----KSRAIK-AGIIPSLLKLLEDK-----AL-------GMVDEALSILQLLASHPEGRN 561 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~~en----~~~iv~-~G~v~~Lv~lL~~~-----~~-------~~~~~Al~iL~nLa~~~~~~~ 561 (643)
++.++.| |.+|+...++ ...+.. -|.+..|++=+-+- .+ .-+-.|++.|-.+|+|++.|.
T Consensus 15 p~~Re~A---L~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~ 91 (268)
T 2fv2_A 15 PETRENA---LLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRS 91 (268)
T ss_dssp TTTHHHH---HHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred chhHHHH---HHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhh
Confidence 3445554 5566654443 333444 57777765544331 11 124568889999999999999
Q ss_pred HHHhcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494 562 EIGRLSFIETLVEIIKNGT-----PKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635 (643)
Q Consensus 562 ~i~~~g~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 635 (643)
.+.++...-.|-.+|...+ +..|-.+++++..|...+ ++.....++.+++|..++.+..|++-.|..|..++..
T Consensus 92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK 171 (268)
T 2fv2_A 92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK 171 (268)
T ss_dssp HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9999998888899998755 456778899999988754 5666667889999999999999999999999999886
Q ss_pred h
Q 006494 636 M 636 (643)
Q Consensus 636 l 636 (643)
+
T Consensus 172 I 172 (268)
T 2fv2_A 172 I 172 (268)
T ss_dssp H
T ss_pred H
Confidence 5
No 164
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.016 Score=59.57 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=53.3
Q ss_pred CcccCccCcccccCCee-cCCccc--ccHHhHHHHHh-cCCCCCCCCCcccCCCCCCchhhhHHHHHH
Q 006494 271 HEFLCPVTLEIMTDPVI-VATGQT--YERESIQRWLN-SNHKTCPKTGQILDHLSLAPNYALRNLIVQ 334 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~-~~~g~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 334 (643)
-.+.|||++..|..|+- ..|.|. ||...+..... .+.+.||+|++.+...+|..+..+...+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 45899999999999997 579886 99988877765 456889999999999999988888776543
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.37 Score=47.89 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=119.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccCh---hhHHHHH-h-cCChHHHHHHHccCCHHHHHHHHHHHHHcccccc----cc
Q 006494 408 LVQLLSYPDSKIQEHTVTALLNLSLDE---TNKRHIA-R-EGAIPAIIEILQNGTNEARENSAAALFSLSMLDE----NR 478 (643)
Q Consensus 408 Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~~k~~i~-~-~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k 478 (643)
|-.-|.+.+|..+..|+..|..+.... ....... . ....+.+-..+.+.+..+...++.++..+...-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 556788999999999999888764322 1112222 1 2345666678888888898888888887753211 11
Q ss_pred chh--hccCChHHHHH-HcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 479 VMV--GNLNGIPPLVN-LLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 479 ~~i--~~~g~i~~Lv~-lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
... .-...++.|+. .+.+....++..|..++..++........ +++.++..+.+.++.++..++.+|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 111 11345677775 36777888888888888777643322222 23556667777899999999999988765
Q ss_pred Chhh----HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 556 HPEG----RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 556 ~~~~----~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.-.. ....+ ..+++.+..++.+.++.+|..|..++..+...-+
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3111 11111 1245567778888999999999999998887644
No 166
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.59 E-value=0.27 Score=48.63 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=116.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhC-ChHHHHHHhcCCCHHHHHHHHHHHHhccc---ChhhHHHHH
Q 006494 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNG-GIRPLVQLLSYPDSKIQEHTVTALLNLSL---DETNKRHIA 441 (643)
Q Consensus 366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~k~~i~ 441 (643)
+...|-+.+...+.+|+..|......+++ ..+...+ .++.+.--+.+.+..+...++.+|..+.. ..+.+-.-.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 44455667888888898888776544332 2222211 23333322335678888888777766531 110000000
Q ss_pred h-cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH
Q 006494 442 R-EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS 520 (643)
Q Consensus 442 ~-~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~ 520 (643)
+ .-.+|.|+.-+......+|..+-.++..+... ......++.++.-+++.+.+.+..++..+..+-...+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 1 22678898888777788898888877766521 112346677888889999999999999888886533322
Q ss_pred HHHhcCcH---HHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494 521 RAIKAGII---PSLLKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 521 ~iv~~G~v---~~Lv~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
...++ +.+..++.+.+..+.+.|+.++..+-.+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 24478 9999999999999999999988866554
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.42 E-value=0.43 Score=48.28 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=101.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHH----HHHHhcC-CCHHHHHHHHHHHHhcccChhh
Q 006494 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP----LVQLLSY-PDSKIQEHTVTALLNLSLDETN 436 (643)
Q Consensus 362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~----Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~ 436 (643)
.+..+.+.++- ..+.+.-++..+|.+.. ++.....+.+.+.-.. +...+.. ..+..+-.+++++.|+..++..
T Consensus 104 ~l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 44444444422 33556777777777663 4544445543322222 3333332 3456688899999999999998
Q ss_pred HHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHccc-CChhhHHHHHHHHHHh
Q 006494 437 KRHIARE--GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRY-GSIRGKKDAATALFNL 512 (643)
Q Consensus 437 k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nL 512 (643)
+..+... ..++.+...+.+.+..++..++.+++|++.........-+ ...+..+..++.. .+.+....++.||.+|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8887742 2344444444456788999999999999853221111111 1233444555543 4778899999999999
Q ss_pred hcCCCchHHHHh-cCcHHHHHHHh
Q 006494 513 SINQSNKSRAIK-AGIIPSLLKLL 535 (643)
Q Consensus 513 s~~~en~~~iv~-~G~v~~Lv~lL 535 (643)
...++....+.+ .|+-..+-++.
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~~~~ 285 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIKKYS 285 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGGGGG
T ss_pred HhCChhHHHHHHHcCHHHHHHHHH
Confidence 976555444444 34444333333
No 168
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.14 E-value=0.3 Score=49.49 Aligned_cols=136 Identities=9% Similarity=0.025 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHHhhcCCCchHHHHhc--CcHHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHHHhcCcHHHH
Q 006494 498 SIRGKKDAATALFNLSINQSNKSRAIKA--GIIPSLLKLLEDKALGMVDEALSILQLLASHPE---GRNEIGRLSFIETL 572 (643)
Q Consensus 498 ~~~~k~~A~~aL~nLs~~~en~~~iv~~--G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~---~~~~i~~~g~i~~L 572 (643)
.+..+..++.++.|+-.++..+..+... .+++.+...+.+.+..++..+..++.|++.... ..+. ...++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHH
Confidence 4566788999999999988888877752 344444444444677888888999999997421 1111 11234445
Q ss_pred HHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHH
Q 006494 573 VEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQH 635 (643)
Q Consensus 573 v~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~ 635 (643)
..++.. .+.+....++.+|.+|...+++....+...|+...+-.+... ..+++.+.|..+|..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 555544 567888888999999998887766666667777776666655 467888888888764
No 169
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.02 E-value=0.035 Score=56.96 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCcccCccCcccccCCee-cCCccc--ccHHhHHHHHh-cCCCCCCCCCcccCCCCCCchhhhHHHHHH
Q 006494 270 PHEFLCPVTLEIMTDPVI-VATGQT--YERESIQRWLN-SNHKTCPKTGQILDHLSLAPNYALRNLIVQ 334 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~-~~~g~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 334 (643)
.-.+.|||+...|+.|+- ..|.|. ||...+-.+.. .+.+.||+|++.+...+|.-+..+...+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 446899999999999997 579886 99998888776 456889999999998888888887776643
No 170
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.39 E-value=1.8 Score=41.76 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcC----C-------CHHHHHHHHHHHHhcccChhhHHHHH-hcCCh
Q 006494 380 DSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSY----P-------DSKIQEHTVTALLNLSLDETNKRHIA-REGAI 446 (643)
Q Consensus 380 ~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i 446 (643)
+-+..|+...+.++... ..+ ..+|+..|+..|.. + +.+.+..++.+|..+..+..+...+. ..+++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence 34445544333443332 223 46777778777753 1 34667788899988887777777666 56789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccccc--c-cchh----------hccCChHHHHHHcccC-ChhhHHHHHHHHHHh
Q 006494 447 PAIIEILQNGTNEARENSAAALFSLSMLDE--N-RVMV----------GNLNGIPPLVNLLRYG-SIRGKKDAATALFNL 512 (643)
Q Consensus 447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nL 512 (643)
..|+..|.+..+.++..+.-+|..++..++ . ...+ .+..-+..+++.+++. +.+.+..++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999988899999999888888876543 3 2222 2234677888888754 455555555555556
Q ss_pred hcCCCc-------hHHHHhcCcHHHHHHHhccCChhh
Q 006494 513 SINQSN-------KSRAIKAGIIPSLLKLLEDKALGM 542 (643)
Q Consensus 513 s~~~en-------~~~iv~~G~v~~Lv~lL~~~~~~~ 542 (643)
...+++ |..+...|..+.+-++=...++.+
T Consensus 179 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 666654 445556776655544433344443
No 171
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.30 E-value=1.3 Score=44.96 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=145.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhh--CChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANN--GGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK 437 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k 437 (643)
+.+..|+..|..-+.+.+..+.....++.+.....+-..++. .--+.|..++. ..++++--.+-..|.....++...
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 467788888888888888888888888877665544332220 11222222222 224566666777787777888888
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhc---cCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGN---LNGIPPLVNLLRYGSIRGKKDAATALFNLS 513 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~---~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs 513 (643)
..+...+.+-.+.+.+..++-++..-|.+++..|-..+ ........ ...+...-.+|.+++--+++.++..|..|.
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 88887778889999999999999888999888774322 22222222 235677888999999999999999999999
Q ss_pred cCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494 514 INQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPE 558 (643)
Q Consensus 514 ~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~ 558 (643)
.++.|-.-|.. ..-+..+..+|++.+..++-+|..+..-.+.+|.
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99998766654 4568888999999999999999999998888754
No 172
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.45 E-value=4.8 Score=41.96 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=105.4
Q ss_pred HHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccChhhHHHHH-hcCCh
Q 006494 380 DSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDETNKRHIA-REGAI 446 (643)
Q Consensus 380 ~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i 446 (643)
+.+..|+.-.+.++... ..+. .+|+..|+.+|.. .+...+..++.+|..+..+..+...+. ...++
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 34555554333443332 2333 6678888888742 245778888999998887777777666 56789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccccc--c-cch----------hhccCChHHHHHHcccC-ChhhHHHHHHHHHHh
Q 006494 447 PAIIEILQNGTNEARENSAAALFSLSMLDE--N-RVM----------VGNLNGIPPLVNLLRYG-SIRGKKDAATALFNL 512 (643)
Q Consensus 447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~----------i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nL 512 (643)
..|+..|.+..+.++..+.-+|..++..++ + ... .++..-+..++..|+++ +.+.+..++..+-.+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999998899999999999888876553 2 222 23345678899999874 566666555555556
Q ss_pred hcCCCc-------hHHHHhcCcHHHHHHHhcc-CChhh
Q 006494 513 SINQSN-------KSRAIKAGIIPSLLKLLED-KALGM 542 (643)
Q Consensus 513 s~~~en-------~~~iv~~G~v~~Lv~lL~~-~~~~~ 542 (643)
...+++ |..+...|..+.+-+ |.. .++.+
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence 665554 445556776666655 554 44433
No 173
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.09 E-value=0.059 Score=44.98 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=29.4
Q ss_pred CcccCccCcc-cccCCee--cCCcccccHHhHHHHHh
Q 006494 271 HEFLCPVTLE-IMTDPVI--VATGQTYERESIQRWLN 304 (643)
Q Consensus 271 ~~f~Cpi~~~-~m~dPv~--~~~g~t~~r~~I~~w~~ 304 (643)
++..|+||.+ ...+||. +.||++||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 5899999 89999999999998443
No 174
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.80 E-value=0.26 Score=53.31 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc
Q 006494 376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN 455 (643)
Q Consensus 376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~ 455 (643)
.+|..++..|..+ ++-+.. ...+..++..+..+.|+++-.++-.|..+ .+-... -.+.++.++.-|.+
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--~DLL~~---Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL--KEFVED---KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT--GGGCCC---HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH--HHHHHH---HHHHHHHHHhhcCC
Confidence 4677777777777 543332 33455555666788999999999999888 110000 24567788888888
Q ss_pred CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-C-hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH
Q 006494 456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-S-IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLK 533 (643)
Q Consensus 456 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~-~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~ 533 (643)
.+.+++..||.+|.-++. . ..+ ...+..|.+.|.+- + .......+..|..|++.+.+. ......+|.|..
T Consensus 311 ~DDDVRAVAAetLiPIA~-p---~~l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P 382 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFPI-T---DSL--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP 382 (800)
T ss_dssp SSHHHHHHHHHHHTTSCC-S---STH--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred cccHHHHHHHHHhhhhcc-h---hhH--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence 999999999999988871 1 000 12344555555442 2 234445566777777766421 112478888999
Q ss_pred HhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHH-HHhcCChHHHHHHHHHH
Q 006494 534 LLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE-IIKNGTPKNKECATSVL 591 (643)
Q Consensus 534 lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~~s~~~ke~A~~~L 591 (643)
+|.+.-..+...++.+|..+. ...++..+.+ +|-...+++++.+..+.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999888889999999887777 1123443333 45567777777776665
No 175
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.37 E-value=1.8 Score=42.69 Aligned_cols=183 Identities=14% Similarity=0.043 Sum_probs=112.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHHHcc---ccccccchh
Q 006494 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE--GAIPAIIEILQNGTNEARENSAAALFSLS---MLDENRVMV 481 (643)
Q Consensus 407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls---~~~~~k~~i 481 (643)
.+...|-+.|+.-+..++..|.... +.+...+... ..++.+.-.+.+.+..+...+..+|..+. ...+++-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l--~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLA--DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHH--HHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHh--hhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 3445555667777777777666532 1122222211 12222222233556666555555555542 112222222
Q ss_pred hc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494 482 GN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560 (643)
Q Consensus 482 ~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~ 560 (643)
.+ .-.+|.|+.-+.+....++..+-.++..++.. .--..+++.+++-+.+.+....++++..+..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 22 23678898888777778888777777666531 111335667788888889999999999999887653222
Q ss_pred HHHHhcCcH---HHHHHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494 561 NEIGRLSFI---ETLVEIIKNGTPKNKECATSVLLELGLNNSYF 601 (643)
Q Consensus 561 ~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 601 (643)
...++ +.+..++.+.+..+|..|+.++..+...-++.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 23468 99999999999999999999998877654433
No 176
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.28 E-value=2.3 Score=50.14 Aligned_cols=218 Identities=8% Similarity=0.066 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhChhhHHHHH---h-hCChH----HHHHHhcCC---CHHHHHHHHHHHHhcccChhhHHHH
Q 006494 372 SSQLNIKRDSVMKIRMLSKENPDNRILIA---N-NGGIR----PLVQLLSYP---DSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
+.++..+..|+..+..++.........+. . ....+ .++..|.++ .+-++..|+.+|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 45777888888988888742210000000 0 01112 233344555 7889999999999887531 1221
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc---------ccchhhc--cCChHHHHHHcccCC---h--hhHHH
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE---------NRVMVGN--LNGIPPLVNLLRYGS---I--RGKKD 504 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~s~~---~--~~k~~ 504 (643)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...++.|+.++.... . .....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 22357788888888789999999999999875321 2333433 245566677776641 1 12345
Q ss_pred HHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHH
Q 006494 505 AATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEII 576 (643)
Q Consensus 505 A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL 576 (643)
++.+|..++. ..+.-..... ..++.|+..+.. .++.....++.+|..++.. ++....+. ...+|.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHH
Confidence 5666666543 2222111111 244555555532 2445566677777777764 33333332 35678888888
Q ss_pred hcCChHHHHHHHHHHHHh
Q 006494 577 KNGTPKNKECATSVLLEL 594 (643)
Q Consensus 577 ~~~s~~~ke~A~~~L~~L 594 (643)
........+.+..++..+
T Consensus 651 ~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HTTCTTTHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHH
Confidence 765545555555555444
No 177
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.93 E-value=0.17 Score=49.26 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=38.3
Q ss_pred cccCccCcccccCCeec-CCcccccHHhHHHHHhcC-CCCCCCCCcccCCC
Q 006494 272 EFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSN-HKTCPKTGQILDHL 320 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~ 320 (643)
-..|.||.++...=+.= .||+.|.+.|+.+|+... ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34599999998854433 289999999999999853 46899999886643
No 178
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.45 E-value=0.17 Score=49.57 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=14.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 006494 406 RPLVQLLSYPDSKIQEHTVTA 426 (643)
Q Consensus 406 ~~Lv~lL~~~~~~~~~~a~~~ 426 (643)
+.|..+++++++.++..++..
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 456667777777777776653
No 179
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.98 E-value=7.7 Score=40.42 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC----C-------CHHHHHHHHHHHHhcccChhhHHHHH-hcCChHH
Q 006494 381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY----P-------DSKIQEHTVTALLNLSLDETNKRHIA-REGAIPA 448 (643)
Q Consensus 381 Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~ 448 (643)
.+..|+...+.++.....-...+|+..|+..|.. + +...+..++.+|..+..+..+...+. ..+++..
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~ 104 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL 104 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHH
T ss_pred HHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHH
Confidence 3445544333443332221135777777777742 1 34667788899988887777766666 6678999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccccc--c-cchh----------hccCChHHHHHHcccC-ChhhHHHHHHHHHHhhc
Q 006494 449 IIEILQNGTNEARENSAAALFSLSMLDE--N-RVMV----------GNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSI 514 (643)
Q Consensus 449 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~ 514 (643)
|+..|.+..+.++..+.-+|..++..++ . ...+ .+..-+..+++.+.++ +.+.+..++..+-.|..
T Consensus 105 l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 105 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 184 (386)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence 9999988888898888888888776543 2 2222 2334677888888754 55566555555555666
Q ss_pred CCCc-------hHHHHhcCcHHHHHHHhccCChhh
Q 006494 515 NQSN-------KSRAIKAGIIPSLLKLLEDKALGM 542 (643)
Q Consensus 515 ~~en-------~~~iv~~G~v~~Lv~lL~~~~~~~ 542 (643)
.+++ |..+...|..+.+-.+=...++.+
T Consensus 185 ~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 185 PAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp TCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 6654 455666776666544433345444
No 180
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.57 E-value=12 Score=43.85 Aligned_cols=171 Identities=13% Similarity=-0.011 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc---c--cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHH
Q 006494 456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL---R--YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPS 530 (643)
Q Consensus 456 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~--s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~ 530 (643)
.++..++.+..++..++..-.... ...++.++.++ . +.++.++..++.+|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 466788888888888864322111 12344444433 3 2377889999999998875211111111 235666
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494 531 LLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKN--GTPKNKECATSVLLELGLNNS-YFILAA 605 (643)
Q Consensus 531 Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~ 605 (643)
|+..| + +.+...|+.++.+++. +.+..+.. ...+..+..++.+ .+...+..+..++..+...-+ +.....
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 3 6789999999999994 33444432 2456666777776 357888888888888876421 222221
Q ss_pred HHcCcHHHHH----HHHhhC--CHHHHHHHHHHHHHhh
Q 006494 606 LQYGVYEHLV----EITRCG--TNRGQRKANSLLQHMS 637 (643)
Q Consensus 606 ~~~g~i~~L~----~ll~~g--~~~~k~~A~~lL~~l~ 637 (643)
.+ ..++++. .++.+. ++..+..+...|..|+
T Consensus 626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 11 2333333 333333 4445555666665554
No 181
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.44 E-value=10 Score=40.40 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i 440 (643)
.....++..- +++.....-|+.-|....++.|+.... ++..++.++...|..++..|+..|-.++.+ ++...+
T Consensus 29 ~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki 101 (507)
T 3u0r_A 29 DAYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV 101 (507)
T ss_dssp HHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence 4455555544 446888888999999999888887665 456799999999999999999999999988 443333
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN 511 (643)
Q Consensus 441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n 511 (643)
...|+.+|.+.+.......-.+|..|-..+. .+.+..|...+.+++..++..++.-|..
T Consensus 102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 4568888888776555555555555432221 2456667766666777777777766653
No 182
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.86 E-value=15 Score=43.00 Aligned_cols=211 Identities=13% Similarity=0.016 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH---c--cCCHHHHHHHHHHHHHccccc-cccchhhccCChH
Q 006494 415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL---Q--NGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIP 488 (643)
Q Consensus 415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~ 488 (643)
.++..++.++.++..++..-.... ...++.++.++ . +.++.+|..++.++..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 578899999999998875422111 13445455444 3 247889999999999887321 111111 23556
Q ss_pred HHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCC-h-hhHHH
Q 006494 489 PLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK--AGIIPSLLKLLEDK--ALGMVDEALSILQLLASH-P-EGRNE 562 (643)
Q Consensus 489 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~--~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~-~-~~~~~ 562 (643)
.|+..| + +.++..|+.++.+++.. .+..+.. .+.+..|.+++..+ +...+..++.++..++.. + +....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 3 77899999999999942 2333332 34555666666652 456777778888877764 1 33323
Q ss_pred HHhcCcHHHHHHHH----hcC--ChHHHHHHHHHHHHhccC-----C-----------HHHHHHHHHcCcHHHHHHHHhh
Q 006494 563 IGRLSFIETLVEII----KNG--TPKNKECATSVLLELGLN-----N-----------SYFILAALQYGVYEHLVEITRC 620 (643)
Q Consensus 563 i~~~g~i~~Lv~lL----~~~--s~~~ke~A~~~L~~L~~~-----~-----------~~~~~~~~~~g~i~~L~~ll~~ 620 (643)
... ..+++++..+ ... ++..+......|..|+.. . ..... -....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHh
Confidence 222 2344444433 222 343444555555444321 0 00001 1124578888877754
Q ss_pred C--CHHHHHHHHHHHHHhhh
Q 006494 621 G--TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 621 g--~~~~k~~A~~lL~~l~~ 638 (643)
. ++.+.+.|..+++.+..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 3 67889999998887644
No 183
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.40 E-value=31 Score=40.12 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=124.8
Q ss_pred HHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhccc-----
Q 006494 360 IEEICSLIQN-LSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSL----- 432 (643)
Q Consensus 360 ~~~i~~Lv~~-L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~----- 432 (643)
-..+..+++. ..+.+.+.+..|-..|..+-+ ++ ++...+..+|. +.+..++..|+.+|.|...
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence 3456666655 445788888888888877653 33 44555666675 4578889999999988642
Q ss_pred -ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc-----CChhhHHHHH
Q 006494 433 -DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY-----GSIRGKKDAA 506 (643)
Q Consensus 433 -~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s-----~~~~~k~~A~ 506 (643)
.++.+..+.+. .+..+... .+++..++...+.++..++..+--. ...+.++.|+.++++ .+......++
T Consensus 93 l~~~~~~~ir~~-ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l 167 (963)
T 2x19_B 93 IPTDQYESLKAQ-LFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALL 167 (963)
T ss_dssp SCGGGHHHHHHH-HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 33444444332 33333331 1246778888888888887543211 146788999998876 2445667777
Q ss_pred HHHHHhhc-C--C---CchHHHHh---cCcHHHHH----HHhccCC-h-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHH
Q 006494 507 TALFNLSI-N--Q---SNKSRAIK---AGIIPSLL----KLLEDKA-L-GMVDEALSILQLLASHPEGRNEIGRLSFIET 571 (643)
Q Consensus 507 ~aL~nLs~-~--~---en~~~iv~---~G~v~~Lv----~lL~~~~-~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~ 571 (643)
.+|..|+. . . ..+..-+. ...++.++ .++.+.. . .+...++.++......... .......++.
T Consensus 168 ~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~--~~~~~~ll~~ 245 (963)
T 2x19_B 168 ELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP--LQDCEALIQA 245 (963)
T ss_dssp HHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC--GGGTHHHHHH
T ss_pred HHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC--cccchHHHHH
Confidence 88777763 1 1 11111111 12344444 4443321 1 3666677666543331110 0011234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 572 LVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 572 Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+...+ .++..++.|+.+|..+...
T Consensus 246 l~~~l--~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 246 AFAAL--QDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp HHHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred HHHHh--CCchHHHHHHHHHHHHHcc
Confidence 55555 3577888999999988875
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.04 E-value=11 Score=44.00 Aligned_cols=173 Identities=11% Similarity=0.074 Sum_probs=104.2
Q ss_pred ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc---ccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHH
Q 006494 454 QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL---RYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPS 530 (643)
Q Consensus 454 ~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~ 530 (643)
.+.++..++.+..++..++..-.. .....++.++..+ .++++.++..++.++..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 345788888888888888743211 0123344555544 33467788899999988875311112333 468888
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494 531 LLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKN--GTPKNKECATSVLLELGLNNS-YFILAA 605 (643)
Q Consensus 531 Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~ 605 (643)
|+..|.+ +.++..|+.++.+++.. .+..+.. ...+..|..++.+ .+...+..+..++..+...-+ +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999953 2222322 1344555566664 356788888888888876543 333332
Q ss_pred HHcCcHHHHHHHHh----hC-CHHHHHHHHHHHHHh
Q 006494 606 LQYGVYEHLVEITR----CG-TNRGQRKANSLLQHM 636 (643)
Q Consensus 606 ~~~g~i~~L~~ll~----~g-~~~~k~~A~~lL~~l 636 (643)
.+ .+++++...+. +. ++..+.....++..|
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 34555544332 32 566666555555544
No 185
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.67 E-value=0.61 Score=45.58 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCHHHHHHHHH
Q 006494 406 RPLVQLLSYPDSKIQEHTVT 425 (643)
Q Consensus 406 ~~Lv~lL~~~~~~~~~~a~~ 425 (643)
+.|..+++++++.++..++.
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 34556677777888777765
No 186
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.97 E-value=6 Score=38.06 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=88.9
Q ss_pred cCChHHHHHHHcc----C-------CHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494 443 EGAIPAIIEILQN----G-------TNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF 510 (643)
Q Consensus 443 ~g~i~~Lv~lL~~----~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~ 510 (643)
.+|+..|+.+|.. + +......+..+|..+.-.......+.. .+++..|+..|.+.++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556666666532 1 234566777888888755554444444 678999999999999999999999999
Q ss_pred HhhcCCC--c-hHHHHh----------cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChh-------hHHHHHhcCcH
Q 006494 511 NLSINQS--N-KSRAIK----------AGIIPSLLKLLED-KALGMVDEALSILQLLASHPE-------GRNEIGRLSFI 569 (643)
Q Consensus 511 nLs~~~e--n-~~~iv~----------~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~-------~~~~i~~~g~i 569 (643)
.+|..++ + ...+++ ..-+.++++.|.+ .+.+....++..+-.+...++ .|..+...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 4 444432 2356667777764 344566667777777776643 34444555555
Q ss_pred HHHHHHHhcCChHH
Q 006494 570 ETLVEIIKNGTPKN 583 (643)
Q Consensus 570 ~~Lv~lL~~~s~~~ 583 (643)
+.+-.+=...++..
T Consensus 202 ~il~~l~~~~~~~L 215 (233)
T 2f31_A 202 QVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred HHHHHHhccCCHHH
Confidence 54443333345443
No 187
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.75 E-value=8.6 Score=40.02 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=91.8
Q ss_pred cCChHHHHHHccc-----------CChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494 484 LNGIPPLVNLLRY-----------GSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQ 551 (643)
Q Consensus 484 ~g~i~~Lv~lL~s-----------~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~ 551 (643)
.+|+..|+.+|.. .+......++.+|..+..+......++. ..++..|...|.+..+.+...++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3456666666631 1235556778888888877766666665 678999999998888899999999999
Q ss_pred HHhCChh---hHHHHHh----------cCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCH--H----HHHHHHHcCcH
Q 006494 552 LLASHPE---GRNEIGR----------LSFIETLVEIIKNG-TPKNKECATSVLLELGLNNS--Y----FILAALQYGVY 611 (643)
Q Consensus 552 nLa~~~~---~~~~i~~----------~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~--~----~~~~~~~~g~i 611 (643)
.+|..++ |...+.+ ..-...++..|+++ +.+.+..++..+-.+..+.+ . .+..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998754 3555543 23466778878763 44555555555545555432 2 23334567877
Q ss_pred HHHHHHHhhCCHHH
Q 006494 612 EHLVEITRCGTNRG 625 (643)
Q Consensus 612 ~~L~~ll~~g~~~~ 625 (643)
+.+..+-..+++..
T Consensus 268 ~il~~lr~~~~~~L 281 (383)
T 3eg5_B 268 QVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHTTSCCHHH
T ss_pred HHHHHHhcCCChhH
Confidence 77776544444433
No 188
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=82.53 E-value=24 Score=35.67 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=115.7
Q ss_pred hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHH---HhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHh
Q 006494 480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRA---IKAGIIPSLLKLLED-KALGMVDEALSILQLLA 554 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~i---v~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa 554 (643)
.+...+.+..|+..|..=+-+.++++..+..++..... ++... +.. -...|..++.. +++++.-.+=.+|....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 34556788899999988899999999999999887433 33222 222 23333333332 46667777778888888
Q ss_pred CChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC---cHHHHHHHHhhCCHHHHHHHHH
Q 006494 555 SHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG---VYEHLVEITRCGTNRGQRKANS 631 (643)
Q Consensus 555 ~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~ 631 (643)
.++.....+...+.+-.+.+.+..++=++-.-|..++..|-......+...+..+ .......|+.+++=-+|+.+..
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 8988888888888888999999988888888888888887766665555555533 4666778899999999999999
Q ss_pred HHHHh
Q 006494 632 LLQHM 636 (643)
Q Consensus 632 lL~~l 636 (643)
+|.-|
T Consensus 232 LLgel 236 (341)
T 1upk_A 232 LLGEL 236 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 189
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.25 E-value=23 Score=36.05 Aligned_cols=112 Identities=10% Similarity=0.043 Sum_probs=90.4
Q ss_pred HHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHH
Q 006494 509 LFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKEC 586 (643)
Q Consensus 509 L~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~ 586 (643)
|.||..+..| ..-++.++++..+...+.-++.++.......|...+....-+..=. .+.+|.++..+.. +.+++-..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 5677776665 6788999999999999988999999999999999887644332211 2578888887754 66788888
Q ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494 587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621 (643)
Q Consensus 587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g 621 (643)
..+.|.+...+.......++..|+++.|...+..-
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 89999999999988888899999999999987644
No 190
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.10 E-value=32 Score=40.70 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=129.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcc------c
Q 006494 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLS------L 432 (643)
Q Consensus 360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs------~ 432 (643)
-..+..++..+.+++.+.|..|-..|..+-+ ++ ++...+..+|. +.+..++..|+..|.|.. .
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 3456666666666667777777777776643 33 34444555553 457888999999998864 2
Q ss_pred ChhhHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHH
Q 006494 433 DETNKRHIAREGAIPAIIEILQNG-----TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT 507 (643)
Q Consensus 433 ~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~ 507 (643)
.++.+..+.+ ..+..+...-.++ +..++...+.++..++..+--. ...+.++.|+.++. .+...+..++.
T Consensus 85 ~~~~~~~ir~-~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGIRN-FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHH
Confidence 3444444432 2333333322111 2456777777777776432110 23678899999886 45556677777
Q ss_pred HHHHhhc----C-CC----ch-----HHHHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494 508 ALFNLSI----N-QS----NK-----SRAIK--AGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570 (643)
Q Consensus 508 aL~nLs~----~-~e----n~-----~~iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~ 570 (643)
+|..|+. . .+ .+ ..+.. ..+++.+..++.+ .+..+...++.++.+....-+.- .+.+...++
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~-~~~~~~ll~ 238 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR-YIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHSSSHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH-HHhhhhHHH
Confidence 7777762 1 11 11 11222 1123334444543 45668888999998877764322 244556677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494 571 TLVEIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
.+.+.+. .++..+..|+.+|..+...
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6663332 3688889999999888765
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.23 E-value=18 Score=38.48 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=90.3
Q ss_pred ccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHH
Q 006494 495 RYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLV 573 (643)
Q Consensus 495 ~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv 573 (643)
..|+...|+.|+..|..... .++-... ++..++.+..+.+..++..|+.-|-.+|.+ +... .++..|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHH
Confidence 34577888888888877654 4444444 456688888888888888999999999887 3322 3567789
Q ss_pred HHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494 574 EIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634 (643)
Q Consensus 574 ~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 634 (643)
++|.+.++......-.+|..|...++. |.+..|+.-+.+|++.+|+++...|+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 999988887777777788887776653 56777787777788999998887775
No 192
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.78 E-value=39 Score=40.09 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=136.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhccc-----
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSL----- 432 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~----- 432 (643)
+-..+..++..+.+++.+.+..|-..|..+- .+++. ...+..+|. +.++.++..|+.+|.+...
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4578888998888888888888888787654 44443 333334443 3478889999999887642
Q ss_pred -ChhhHHHHHhcCChHHHHHHHcc-----CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHH
Q 006494 433 -DETNKRHIAREGAIPAIIEILQN-----GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506 (643)
Q Consensus 433 -~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~ 506 (643)
.++.+..+.+ ..+..+...-.+ .+...+...+.++..+...+-.. ...+.++-|+.++.+ ++......+
T Consensus 96 L~~e~~~~LR~-~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 96 LPRNQCEGIKK-YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp SCHHHHHHHHH-HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHH
Confidence 2344443332 244444444322 23455666666777665332111 136678888888764 345566677
Q ss_pred HHHHHhhcC--CC-------c-----hHHHHhc--CcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH
Q 006494 507 TALFNLSIN--QS-------N-----KSRAIKA--GIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFI 569 (643)
Q Consensus 507 ~aL~nLs~~--~e-------n-----~~~iv~~--G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i 569 (643)
.+|..|+.. .- . +..+.+. .+++.+..+|.. .++.+...++.+|....++-+. ..+++.+.+
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll 249 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHH
Confidence 777777642 10 1 1122221 233333444433 5677888899999999998543 356677788
Q ss_pred HHHH-HHHhcCChHHHHHHHHHHHHhccCC
Q 006494 570 ETLV-EIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 570 ~~Lv-~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
+.|+ .+| .++..+..|+.+|..+...+
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 8774 555 57889999999999988753
No 193
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=75.35 E-value=56 Score=33.25 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=88.2
Q ss_pred HHHhcccChhh-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc-cCChhhHH
Q 006494 426 ALLNLSLDETN-KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR-YGSIRGKK 503 (643)
Q Consensus 426 ~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~ 503 (643)
.|+||-.++.| -.-+++.+++..+..++.-++.+........|...|..... ..+--...+|.++..+. ++.+++..
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL-~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKAL-AKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGG-GTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHH-hhccccccchHHHHHhccCCCcceEE
Confidence 45566666544 56778999999999999988887776666666666532221 11112456788888885 56788888
Q ss_pred HHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHhcc-------CChhhHHHHHHHHHHH
Q 006494 504 DAATALFNLSINQS-NKSRAIKAGIIPSLLKLLED-------KALGMVDEALSILQLL 553 (643)
Q Consensus 504 ~A~~aL~nLs~~~e-n~~~iv~~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nL 553 (643)
.....|.|...+.. .+...+..|+++.|-..+.. .+..-...|+.+++|-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999988665 46777889999999888754 1223345566666553
No 194
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=75.24 E-value=1.3e+02 Score=35.15 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=128.0
Q ss_pred HHHHHH-HhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC---CHHHHHHHHHHHHhccc--Ch
Q 006494 362 EICSLI-QNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP---DSKIQEHTVTALLNLSL--DE 434 (643)
Q Consensus 362 ~i~~Lv-~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~--~~ 434 (643)
.+...+ ..+.. .+++.|.+|-..|..+-+ +++ +......+|..+ +..++..|+.+|.+... .+
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 344444 23433 367888888877776653 333 445556677553 67888888888876432 23
Q ss_pred h----hHHHHHhcCChHHHHHHHc--cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCCh-hhHHHHHH
Q 006494 435 T----NKRHIAREGAIPAIIEILQ--NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSI-RGKKDAAT 507 (643)
Q Consensus 435 ~----~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~-~~k~~A~~ 507 (643)
+ .+..+.+ ..+..+.. .. .+..-++...+.++..+...+-. -...+.++-|+.++.+++. ......+.
T Consensus 77 e~~~~~~~~lr~-~ll~~l~~-~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~Lr 151 (980)
T 3ibv_A 77 ESNLLELQMIRD-SVWSYIKE-LSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLK 151 (980)
T ss_dssp TTSHHHHHHHHH-HHHHHHHH-CCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred hhhHHHHHHHHH-HHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHH
Confidence 3 3333322 23333333 11 23456777777787777643211 1346788889998877554 33444455
Q ss_pred HHHHhhc---CCC--------c-----hHHHHhc---CcHHHHHHHhcc----CChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494 508 ALFNLSI---NQS--------N-----KSRAIKA---GIIPSLLKLLED----KALGMVDEALSILQLLASHPEGRNEIG 564 (643)
Q Consensus 508 aL~nLs~---~~e--------n-----~~~iv~~---G~v~~Lv~lL~~----~~~~~~~~Al~iL~nLa~~~~~~~~i~ 564 (643)
+|..++. +.. . +..+.+. -+++....+|.. .++.+...++.+|..-...-+. ..++
T Consensus 152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~ 230 (980)
T 3ibv_A 152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIV 230 (980)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHH
T ss_pred HHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhh
Confidence 5553332 110 1 1122111 114444444533 5677888899999888886443 4555
Q ss_pred hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
+.+.++.+..+|. ++..++.|+.+|..+....
T Consensus 231 ~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 231 NEPCMNLLYSFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp CHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcC
Confidence 6678888888885 4889999999999888654
No 195
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=75.11 E-value=45 Score=39.37 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhccc-----
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSL----- 432 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~----- 432 (643)
+-..+..++..+.+++.+.+..|-..|..+-+ ++ ++...+..+|. +.++.++..|+..|.+...
T Consensus 14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 34677788877776666677777777766553 33 33444445553 4578888889888887642
Q ss_pred -ChhhHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHH
Q 006494 433 -DETNKRHIAREGAIPAIIEILQNG-----TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506 (643)
Q Consensus 433 -~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~ 506 (643)
.++.+..+. ...+..+.....++ ..-++...+.++..+...+-.. ...+.++-|+.++.++ .......+
T Consensus 84 L~~e~~~~Ir-~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L 158 (1023)
T 4hat_C 84 LPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNM 158 (1023)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHH
Confidence 334444333 23444444432221 2334445666666665432111 2467888899988654 34566666
Q ss_pred HHHHHhhcC------CC---chHH-----HHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH
Q 006494 507 TALFNLSIN------QS---NKSR-----AIK--AGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFI 569 (643)
Q Consensus 507 ~aL~nLs~~------~e---n~~~-----iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i 569 (643)
.+|..|+.. .+ .|.. +.+ ..+++.+..+|.. .++.+...++.++......-+. ..+++.+.+
T Consensus 159 ~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll 237 (1023)
T 4hat_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY-RYIYETNIL 237 (1023)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT-HHHHSSSHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH-HHhcchhHH
Confidence 666665421 11 1211 122 2344444555543 4667888899999998887443 355667889
Q ss_pred HHHH-HHHhcCChHHHHHHHHHHHHhccC
Q 006494 570 ETLV-EIIKNGTPKNKECATSVLLELGLN 597 (643)
Q Consensus 570 ~~Lv-~lL~~~s~~~ke~A~~~L~~L~~~ 597 (643)
+.+. .++. ++..++.|+.+|..+...
T Consensus 238 ~~l~~~~L~--~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 238 ELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp HHHHTHHHH--SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHHcc
Confidence 9998 8874 678999999999999873
No 196
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=75.04 E-value=18 Score=37.61 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC--c-hHHHH----------
Q 006494 458 NEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS--N-KSRAI---------- 523 (643)
Q Consensus 458 ~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e--n-~~~iv---------- 523 (643)
......+..+|..+.-+......+.. .+++..|+..|.+..+.++..++..|..+|..++ + ...++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 45566777888887655544444444 6789999999998899999999999999998654 3 33333
Q ss_pred hcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChh-------hHHHHHhcCcHHHHHHHHhc-CChHH
Q 006494 524 KAGIIPSLLKLLED-KALGMVDEALSILQLLASHPE-------GRNEIGRLSFIETLVEIIKN-GTPKN 583 (643)
Q Consensus 524 ~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~-------~~~~i~~~g~i~~Lv~lL~~-~s~~~ 583 (643)
+..-+..+++.+.. .+.+....++..+-.+...++ .|..+...|..+.+ .-|+. .++..
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM 219 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhH
Confidence 23356678888864 445566677777777777643 35555555555554 44544 44433
No 197
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.96 E-value=16 Score=43.31 Aligned_cols=141 Identities=11% Similarity=-0.014 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHccccccc-cchhhccCChHHHHHHcccC-----ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHH
Q 006494 456 GTNEARENSAAALFSLSMLDEN-RVMVGNLNGIPPLVNLLRYG-----SIRGKKDAATALFNLSINQSNKSRAIKAGIIP 529 (643)
Q Consensus 456 ~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~s~-----~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~ 529 (643)
.++..++.++.++..++..... ...-.-..+++.|+.++... ...++..++++|...+..-.....+. ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 4799999999999999854322 11111135778888887642 12233344455554443211122221 12444
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh------cCcHHHH----HHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494 530 SLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR------LSFIETL----VEIIKNGTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 530 ~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~------~g~i~~L----v~lL~~~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.|++.+.+.++++++.|+.++.+||.. ++..+.. ...++.+ ...+...++.....+..++..+...-+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 455555556778999999999999973 3444432 1123333 333344566777777788887776543
No 198
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.18 E-value=42 Score=39.66 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCCh-HHHH
Q 006494 414 YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGI-PPLV 491 (643)
Q Consensus 414 ~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-~~Lv 491 (643)
+++...+..|-..|..+.. ..++...+..+|.+ .+..+|..|+.+|.+........-.--+...| ..|+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~---------~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQD---------NPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHH---------STTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHh---------CchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 3445556666666654432 24566677777754 47889999999998875321110000001111 3344
Q ss_pred HHcccC---------ChhhHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh--
Q 006494 492 NLLRYG---------SIRGKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-- 558 (643)
Q Consensus 492 ~lL~s~---------~~~~k~~A~~aL~nLs~--~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-- 558 (643)
.++.+. +..++...+.++..++. .++.. .+.++.|++.+. .+....+.++.+|..|+..-.
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHh
Confidence 444321 24556666777777765 34333 357788888886 455567778888888874210
Q ss_pred -------hH-----HHHHhc--CcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCH
Q 006494 559 -------GR-----NEIGRL--SFIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTN 623 (643)
Q Consensus 559 -------~~-----~~i~~~--g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~ 623 (643)
.+ ..+... .++..+...+.. .++..+..|+.++......-+- ..+.+...++.+...+. .++
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l-~~~ 248 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM-TSP 248 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH-HSH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC-CCH
Confidence 11 222221 223344444543 4567788888888776543221 11333556666663222 256
Q ss_pred HHHHHHHHHHHHhh
Q 006494 624 RGQRKANSLLQHMS 637 (643)
Q Consensus 624 ~~k~~A~~lL~~l~ 637 (643)
..+..|..+|..+-
T Consensus 249 ~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 249 DTRAITLKCLTEVS 262 (1049)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66777776665544
No 199
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=70.79 E-value=58 Score=32.47 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred CChHHHHHHcccC------ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh--ccCChhhHHHHHHHHHHHhCC
Q 006494 485 NGIPPLVNLLRYG------SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL--EDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 485 g~i~~Lv~lL~s~------~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL--~~~~~~~~~~Al~iL~nLa~~ 556 (643)
..+.....++++| +......|+..|..++-.-+.-.+|++.. ...|-.++ ......+.+.|..++..--.+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 3566777788887 23345667777777776666667777632 34444444 234556889999999877776
Q ss_pred -hhhHHHHHhc--CcHHHHHHHHhc-------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC--CHH
Q 006494 557 -PEGRNEIGRL--SFIETLVEIIKN-------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG--TNR 624 (643)
Q Consensus 557 -~~~~~~i~~~--g~i~~Lv~lL~~-------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~ 624 (643)
|.....|... ..+..+..-|.. .+......-+++|-.|........ ...+..|.++..-+ .+.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHH
Confidence 7777766653 455555554433 234445556788888888753221 34568888887777 899
Q ss_pred HHHHHHHHHHHhh
Q 006494 625 GQRKANSLLQHMS 637 (643)
Q Consensus 625 ~k~~A~~lL~~l~ 637 (643)
+|.|+..++..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988665
No 200
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.75 E-value=11 Score=33.40 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcC------CCHHHHHHHHHHHHhc
Q 006494 358 ALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSY------PDSKIQEHTVTALLNL 430 (643)
Q Consensus 358 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nL 430 (643)
..+.++..|.+.|++.++.++..|+..|-.+.+.. ...+..++....+..|+++++. .+..++..++..+...
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999998763 4556677777888889998864 3678999998888776
Q ss_pred c
Q 006494 431 S 431 (643)
Q Consensus 431 s 431 (643)
+
T Consensus 115 ~ 115 (148)
T 1mhq_A 115 T 115 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.66 E-value=10 Score=34.31 Aligned_cols=73 Identities=4% Similarity=0.054 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|++.++.++..|+..|-.+.+.. ...+..++....+..|++++.. .++.++..++..+...+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888763 4455566666777888888865 57888888888877654
No 202
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=67.04 E-value=2e+02 Score=33.88 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHH----HhhC---ChHHHHHHhcCCCHHHHHHHHHHH---Hhc
Q 006494 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILI----ANNG---GIRPLVQLLSYPDSKIQEHTVTAL---LNL 430 (643)
Q Consensus 361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i----~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L---~nL 430 (643)
..+-.|++.|..-+.+........+. ..+..|..+ ...| ++..+..++.++.....+ |+.+| .++
T Consensus 311 ~~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~ 385 (1056)
T 1lsh_A 311 AKFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSN 385 (1056)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhcc
Confidence 34555666666655554444333332 123344443 3334 344556666555433333 22222 222
Q ss_pred ccChhhHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHcc----ccccccchhhccCChHHHHHHc----ccCC
Q 006494 431 SLDETNKRHIAREGAIPAIIEILQN----GTNEARENSAAALFSLS----MLDENRVMVGNLNGIPPLVNLL----RYGS 498 (643)
Q Consensus 431 s~~~~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls----~~~~~k~~i~~~g~i~~Lv~lL----~s~~ 498 (643)
. .+ + ...+..+..++++ .++.++..+.-++.+|. ..... .....++.+.+.+ ..++
T Consensus 386 ~-~P-t------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~ 453 (1056)
T 1lsh_A 386 Q-QA-T------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAK 453 (1056)
T ss_dssp C-CC-C------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTC
T ss_pred C-CC-C------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCC
Confidence 1 11 1 1234555566654 34555555555555553 22111 1123345555444 5567
Q ss_pred hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHH
Q 006494 499 IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-------KALGMVDEALSILQLLASHPEGRNEIGRLSFIET 571 (643)
Q Consensus 499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~ 571 (643)
..-+..++.+|.|+-.. ..++.|..++.. ....+...|+.+|..++.... .-+-+.
T Consensus 454 ~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-------~~v~~i 516 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-------RKVQEI 516 (1056)
T ss_dssp HHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-------HHHHHH
T ss_pred hHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-------HHHHHH
Confidence 77778889999998641 357777777742 123566778888888875411 113445
Q ss_pred HHHHHhc--CChHHHHHHHHHHH
Q 006494 572 LVEIIKN--GTPKNKECATSVLL 592 (643)
Q Consensus 572 Lv~lL~~--~s~~~ke~A~~~L~ 592 (643)
+..++.+ ..++.|-.|+.+|.
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHH
Confidence 6777744 45777777776664
No 203
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.36 E-value=13 Score=33.88 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcC------CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSY------PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|++.++.++..|+..|-.+.+.. ...+..++....+..|++++.. .+..++..++..+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998764 3456667777788889998863 36788999998887765
No 204
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.04 E-value=14 Score=32.43 Aligned_cols=74 Identities=5% Similarity=0.067 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494 358 ALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431 (643)
Q Consensus 358 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 431 (643)
..+.++..+.+.|++.++.++..|+..|-.+.+... ..+..++....+..|+++++..++.++..++..+...+
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999988887543 33445555566777888887778899999988887665
No 205
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=64.77 E-value=53 Score=31.45 Aligned_cols=137 Identities=11% Similarity=0.065 Sum_probs=90.4
Q ss_pred HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHH-HcccCChhhHHHHHHHHHHhhc--CCCchHHHHhcCc
Q 006494 451 EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVN-LLRYGSIRGKKDAATALFNLSI--NQSNKSRAIKAGI 527 (643)
Q Consensus 451 ~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~s~~~~~k~~A~~aL~nLs~--~~en~~~iv~~G~ 527 (643)
.+.++...++|..|+.+|..+ . .....++.+.. +....+-+++..++.++..++. +++. .
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~ 140 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A 140 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence 344556688998888887776 2 11235566666 4455678999999999999884 3331 5
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhc-CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 006494 528 IPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRL-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL 606 (643)
Q Consensus 528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~ 606 (643)
++.+.....+++..+...|...+.--+..+.- -... -+++.|..+..+.+.-+|......|..++..+|+.+...+
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 67778888888888887776655432221110 0111 1344444455557788888888999999999998777666
Q ss_pred H
Q 006494 607 Q 607 (643)
Q Consensus 607 ~ 607 (643)
+
T Consensus 218 ~ 218 (240)
T 3l9t_A 218 K 218 (240)
T ss_dssp H
T ss_pred H
Confidence 5
No 206
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=64.63 E-value=2.7 Score=31.25 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCCCCCCcccCCCCCC-c--hhhhHHHHHHHHhhccccCCCCCCCC
Q 006494 307 HKTCPKTGQILDHLSLA-P--NYALRNLIVQWCEKNNVELPKKDTNT 350 (643)
Q Consensus 307 ~~~cP~~~~~l~~~~l~-p--n~~lr~lI~~w~~~~~~~~p~~~~~~ 350 (643)
+..||.|++.+.+..+. + +..-|..|.+|...++. +|.+....
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCC
Confidence 46799999999877666 4 35668999999988875 67665443
No 207
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=63.49 E-value=46 Score=33.16 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=92.6
Q ss_pred hHHHHHHHccC------CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc--ccCChhhHHHHHHHHHHhhcC-C
Q 006494 446 IPAIIEILQNG------TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL--RYGSIRGKKDAATALFNLSIN-Q 516 (643)
Q Consensus 446 i~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL--~s~~~~~k~~A~~aL~nLs~~-~ 516 (643)
+..+..++++| +.+....|.-.|-.+|.+.++=..|.... ...|-.++ ....+..++.|+.+|..-..+ |
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 44455666666 34456677788888888777666666532 34444443 344567888899888876664 4
Q ss_pred CchHHHHh--cCcHHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHH
Q 006494 517 SNKSRAIK--AGIIPSLLKLLED-------KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKE 585 (643)
Q Consensus 517 en~~~iv~--~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke 585 (643)
+....+.. ...+..+..-|.. ....++..-+.+|.-|..++. .+ ....+..|.+++... .+..|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHH
Confidence 44444433 4555555544433 233566777999999998862 22 234667788877766 889999
Q ss_pred HHHHHHHHhc
Q 006494 586 CATSVLLELG 595 (643)
Q Consensus 586 ~A~~~L~~L~ 595 (643)
.++.++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998887766
No 208
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.41 E-value=65 Score=38.75 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=120.6
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh--cCCCHHHHHHHHHHHHhcc------c
Q 006494 363 ICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL--SYPDSKIQEHTVTALLNLS------L 432 (643)
Q Consensus 363 i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~nLs------~ 432 (643)
+..++..+-++ +.+.+..|-..|..+-+. + .+...+...| .+.+..++..|+..|.|.. .
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44444443333 666788887777776432 2 1333333333 3457888888988888763 2
Q ss_pred ChhhHHHHHhcCChHHHHHHHcc---CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHH
Q 006494 433 DETNKRHIAREGAIPAIIEILQN---GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATAL 509 (643)
Q Consensus 433 ~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL 509 (643)
+++.|..|.+ ..+..+...-.. .+..++...+.++..++..+--. ...+.++.|+.++.+ +...+..++.+|
T Consensus 83 ~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 83 SRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp CHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 3444544432 233333322111 35677777888888876443211 236788999998876 455677788888
Q ss_pred HHhhcC---CC----chHH-----HHhc--CcHHHHHHHhcc-------------------CChhhHHHHHHHHHHHhCC
Q 006494 510 FNLSIN---QS----NKSR-----AIKA--GIIPSLLKLLED-------------------KALGMVDEALSILQLLASH 556 (643)
Q Consensus 510 ~nLs~~---~e----n~~~-----iv~~--G~v~~Lv~lL~~-------------------~~~~~~~~Al~iL~nLa~~ 556 (643)
..|+.. .+ .+.. +.+. .+++.+..++.+ .+..+...++.++.+....
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 887631 11 1111 1111 223333333432 1123455566666655554
Q ss_pred hhhHHHHHhcC--cHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494 557 PEGRNEIGRLS--FIETLVEIIKNGTPKNKECATSVLLELGLNN 598 (643)
Q Consensus 557 ~~~~~~i~~~g--~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 598 (643)
... ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 238 i~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 238 VSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp SCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 322 2233322 5666665554 5778899999999998754
No 209
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.11 E-value=11 Score=33.09 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=51.7
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC--cHHHHHHHHh-----hCC---HHHHHHHHHHHHHh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG--VYEHLVEITR-----CGT---NRGQRKANSLLQHM 636 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g--~i~~L~~ll~-----~g~---~~~k~~A~~lL~~l 636 (643)
.++..|.+-|...++..+-+|+.+|..||.++.+....-+... .|..|..+-. .|. ..+|.+|.+++.+|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3567777888888999999999999999987665444433322 3333333221 232 57899999999999
Q ss_pred hhccC
Q 006494 637 SKREH 641 (643)
Q Consensus 637 ~~~~e 641 (643)
.....
T Consensus 129 ~d~~~ 133 (140)
T 1vdy_A 129 FSEEN 133 (140)
T ss_dssp TCCSS
T ss_pred hCcCC
Confidence 87554
No 210
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.32 E-value=1.8 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=14.7
Q ss_pred CcccCccCcccccCCeecC
Q 006494 271 HEFLCPVTLEIMTDPVIVA 289 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~ 289 (643)
+.|.||||+.-+..|-.+-
T Consensus 4 EGFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEEECTTTCCEESSHHHHH
T ss_pred cccCCcHHHHHcCCHHHHH
Confidence 4599999998888876543
No 211
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=59.97 E-value=1.1e+02 Score=36.26 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=86.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH----hcC---ChHHHHHHHccCCHHHHHHHHHHHHHccccccccc
Q 006494 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA----REG---AIPAIIEILQNGTNEARENSAAALFSLSMLDENRV 479 (643)
Q Consensus 407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~----~~g---~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~ 479 (643)
.|+++|+.-+.+.......-+. ..+..+..+. ..| ++..+.+.+.++.....+ |+.+|..+.....
T Consensus 315 ~Lv~~lR~~~~e~L~~l~~~~~---~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~--- 387 (1056)
T 1lsh_A 315 RLTAFLRNVDAGVLQSIWHKLH---QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ--- 387 (1056)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHT---TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC---
T ss_pred HHHHHHhcCCHHHHHHHHHHHh---ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC---
Confidence 3677777665554333333222 2233333333 233 566666666665422222 3333332211000
Q ss_pred hhhccCChHHHHHHcccC----ChhhHHHHHHHHHHh----hcCCCchHHHHhcCcHHHHHHHh----ccCChhhHHHHH
Q 006494 480 MVGNLNGIPPLVNLLRYG----SIRGKKDAATALFNL----SINQSNKSRAIKAGIIPSLLKLL----EDKALGMVDEAL 547 (643)
Q Consensus 480 ~i~~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nL----s~~~en~~~iv~~G~v~~Lv~lL----~~~~~~~~~~Al 547 (643)
-....+..+..++.+. ++.++..|+.++.+| |.+...+. ...++.+.+.| ...+..-...++
T Consensus 388 --Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~L 461 (1056)
T 1lsh_A 388 --ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLAL 461 (1056)
T ss_dssp --CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 1223556777777653 455556666665555 44433321 12345555444 445556677789
Q ss_pred HHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-------CChHHHHHHHHHHHHhccCCH
Q 006494 548 SILQLLASHPEGRNEIGRLSFIETLVEIIKN-------GTPKNKECATSVLLELGLNNS 599 (643)
Q Consensus 548 ~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-------~s~~~ke~A~~~L~~L~~~~~ 599 (643)
.+|.|+... ..++.|.+++.. ...+++..|+.+|..+....+
T Consensus 462 kaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 462 KALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred HHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch
Confidence 999998752 345555555532 124566667777777766544
No 212
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=57.34 E-value=1.1e+02 Score=29.14 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=86.0
Q ss_pred HHHHHHH-hhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHHHHHHhccc--ChhhH
Q 006494 362 EICSLIQ-NLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTVTALLNLSL--DETNK 437 (643)
Q Consensus 362 ~i~~Lv~-~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~--~~~~k 437 (643)
.+..+.. ++.+...++|..|+..|..+ ... ...++.+.. +-....+.+++.+..++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3444444 44566778999999977765 211 123445555 4456789999999888877653 222
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccC-ChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLN-GIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~ 516 (643)
..++.+....++.+..+|..|.-.+.--+... ....... .++.|-.+..+.+.-+++..+.+|..++...
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 25777888888999999876655543211110 0111111 3444444555567778888889999999854
Q ss_pred Cc-hHHHHh
Q 006494 517 SN-KSRAIK 524 (643)
Q Consensus 517 en-~~~iv~ 524 (643)
+. ...+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 43 334433
No 213
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.38 E-value=19 Score=28.65 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=36.9
Q ss_pred cccCccCccccc-----CCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 272 EFLCPVTLEIMT-----DPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 272 ~f~Cpi~~~~m~-----dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
.-.|.||++=.- +|-+. .|+...||.|.+-=.+.|+..||.|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 347999977533 23332 3688999999999999999999999988763
No 214
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=56.30 E-value=7.4 Score=31.73 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=40.9
Q ss_pred CCCcccCccCcccccCCeecCC--c----ccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVAT--G----QTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~--g----~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
+++..+|||+++.=..-|.+.- | .-||..++.+....| ..=|.+|+|+....
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sM 81 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASI 81 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhh
Confidence 3567899999999999998742 2 359999999999874 56689998887543
No 215
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.65 E-value=20 Score=31.41 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=51.1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494 528 IPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595 (643)
Q Consensus 528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 595 (643)
+..|.+-|.+.++.++..|+.+|-.+..+ ......+.+...+..|+.++...++.+++..+..+..-.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44455566667788888899888888876 344556666678888888887788899999888876654
No 216
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=55.34 E-value=3.6 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=14.6
Q ss_pred CCcccCccCcccccCCeec
Q 006494 270 PHEFLCPVTLEIMTDPVIV 288 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~ 288 (643)
|..|.||+|+.-|-||-+.
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CCCEECTTSSCEESSHHHH
T ss_pred CCcccCccccccCcChHHH
Confidence 4578899999888887443
No 217
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.43 E-value=31 Score=30.51 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcC------CCHHHHHHHHHHHHhc
Q 006494 358 ALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSY------PDSKIQEHTVTALLNL 430 (643)
Q Consensus 358 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nL 430 (643)
..+.++..|.+.|.+.++.++..|+..|-.+.+... ..+..++...++..|+++++. .+..++...+..+...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999998887543 335556666778889998863 4678899998888776
Q ss_pred c
Q 006494 431 S 431 (643)
Q Consensus 431 s 431 (643)
+
T Consensus 125 ~ 125 (149)
T 3g2s_A 125 T 125 (149)
T ss_dssp H
T ss_pred H
Confidence 5
No 218
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.37 E-value=26 Score=31.51 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=54.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+. ......+.....+.-|+.++.. .++.+++++..++..-..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999998888764 4455555555677778887765 468999999999886553
No 219
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.46 E-value=7 Score=31.67 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCCCCCCCcccCCCCCCc---hhhhHHHHHHHHhhc-----cccCCCCCC
Q 006494 307 HKTCPKTGQILDHLSLAP---NYALRNLIVQWCEKN-----NVELPKKDT 348 (643)
Q Consensus 307 ~~~cP~~~~~l~~~~l~p---n~~lr~lI~~w~~~~-----~~~~p~~~~ 348 (643)
..+||+|...+.+....| +..-+..|..|...+ +..+|.+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc 56 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGC 56 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTC
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcC
Confidence 467999999998766654 456688999998865 345676443
No 220
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=52.36 E-value=6.7 Score=36.09 Aligned_cols=44 Identities=9% Similarity=-0.052 Sum_probs=33.8
Q ss_pred CCCCCCCCcccCCCCCCc--hhhhHHHHHHHHhhccccCCCCCCCC
Q 006494 307 HKTCPKTGQILDHLSLAP--NYALRNLIVQWCEKNNVELPKKDTNT 350 (643)
Q Consensus 307 ~~~cP~~~~~l~~~~l~p--n~~lr~lI~~w~~~~~~~~p~~~~~~ 350 (643)
..+||+|...+......| +..-+..|..|...+|..+|.+..+.
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 468999999998776666 45678999999988766677766544
No 221
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=49.35 E-value=9.8 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN 306 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~ 306 (643)
..+.||+|+..+..+.+++ +..-+..|+.|...+
T Consensus 62 ~~~~cP~~~~~l~~~~L~p--n~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 62 NSPTDPFNRQTLTESMLEP--VPELKEQIQAWMREK 95 (100)
T ss_dssp SCSBCSSSCCBCCTTSSEE--CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCChhhceE--CHHHHHHHHHHHHHh
Confidence 3689999999999887777 778899999999864
No 222
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=48.54 E-value=3.8e+02 Score=31.21 Aligned_cols=208 Identities=8% Similarity=-0.018 Sum_probs=112.6
Q ss_pred hhhhHHHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC---CHHHHHHHHHHHHHhhhh-Chh----hH
Q 006494 325 NYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSS---QLNIKRDSVMKIRMLSKE-NPD----NR 396 (643)
Q Consensus 325 n~~lr~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~---~~~~~~~Al~~L~~La~~-~~~----~r 396 (643)
+...|..+.+|+.+-.-. | +........|... +..++.-|+..|.+..+. +++ .+
T Consensus 21 d~~~r~~A~~~L~~~q~s-p----------------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S----------------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T----------------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-h----------------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 466777788888653211 1 2344555556443 678888888877755542 233 34
Q ss_pred HHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHHHcccc
Q 006494 397 ILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTN-EARENSAAALFSLSML 474 (643)
Q Consensus 397 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~ 474 (643)
..+.+ ..+..+...-. ....-++.+.+.+|..+...+-.. .-.++++.++..+.+++. ........+|..++..
T Consensus 84 ~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 84 QMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence 44332 22333333110 124556677777776655322000 124567777777765433 2333344444433211
Q ss_pred --c-c--------c-----cchhhcc---CChHHHHHHcc----cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHH
Q 006494 475 --D-E--------N-----RVMVGNL---NGIPPLVNLLR----YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSL 531 (643)
Q Consensus 475 --~-~--------~-----k~~i~~~---g~i~~Lv~lL~----s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~L 531 (643)
+ . . +..+.+. ..++....+|. +.++.....++.+|......-+ -..++..+.++.+
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l 238 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLL 238 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHH
T ss_pred HHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHH
Confidence 0 0 0 1222211 01333444443 3567777788888887766433 3455567788888
Q ss_pred HHHhccCChhhHHHHHHHHHHHhCC
Q 006494 532 LKLLEDKALGMVDEALSILQLLASH 556 (643)
Q Consensus 532 v~lL~~~~~~~~~~Al~iL~nLa~~ 556 (643)
.++|.+ +.+.+.|+.+|..+...
T Consensus 239 ~~~L~~--~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 239 YSFLQI--EELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred HHHcCC--hHHHHHHHHHHHHHHHc
Confidence 888864 67899999999988875
No 223
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.39 E-value=34 Score=33.15 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHHHHHHhcccChh-hHHHHHhcCChHHHHHHHcc
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTVTALLNLSLDET-NKRHIAREGAIPAIIEILQN 455 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~ 455 (643)
+..++..+|.+..+.+.+ +.+..++. .+...++..+--+++++.|+..++. .+..+........+++.+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 455666666655443322 22332222 3334467788899999999998888 67766644334555554422
Q ss_pred --------CCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHccc---------CChhhHHHHHHHHHHhhcCC
Q 006494 456 --------GTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRY---------GSIRGKKDAATALFNLSINQ 516 (643)
Q Consensus 456 --------~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s---------~~~~~k~~A~~aL~nLs~~~ 516 (643)
.+..++..++..++|++.... .+. +......++.++.. .+.+....++.||.+|...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 244678888899999985322 121 12334455555542 36678888889999988633
No 224
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.66 E-value=16 Score=35.66 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=77.2
Q ss_pred cCChhhHHHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHhcc--------CChhhHHHHHHHHHHHhCChh-hHHHHHh
Q 006494 496 YGSIRGKKDAATALFNLSINQS-NKSRAIKAGIIPSLLKLLED--------KALGMVDEALSILQLLASHPE-GRNEIGR 565 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~~G~v~~Lv~lL~~--------~~~~~~~~Al~iL~nLa~~~~-~~~~i~~ 565 (643)
+.++..+.-+++++.|+-.++. .+..+........+++.+.+ .+..++-.+..++.|++.... .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4466788899999999999888 56666544345555555422 234566677888889887411 110 1
Q ss_pred cCcHHHHHHHHhc---------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHH-hh-CCHHHHHHHHHH
Q 006494 566 LSFIETLVEIIKN---------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEIT-RC-GTNRGQRKANSL 632 (643)
Q Consensus 566 ~g~i~~Lv~lL~~---------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~-g~~~~k~~A~~l 632 (643)
......+++.+.. .+++....++.+|.+|...++...+.+. ....+-... .. ..+|.+.-+..+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTT---TCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhc---cHHHHHHHHHHcccchHHHHHHHhc
Confidence 2345566666652 2556667777788887765544332222 223333332 12 467877776554
No 225
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.65 E-value=28 Score=31.64 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=56.0
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhh------CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRC------GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+.-|+.++.. .+..+|+++..++..-..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999888887654 44556566778888888852 358999999999987553
No 226
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.37 E-value=40 Score=29.85 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=53.4
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc------CChHHHHHHHHHHHHhc
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN------GTPKNKECATSVLLELG 595 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~------~s~~~ke~A~~~L~~L~ 595 (643)
++..|.+-|.+.++.++..|+.+|-.+..+ ......|.+..++..|++++.. .++.+++..+..+..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 344566667778889999999999999886 4556777777889999999853 46788998888876654
No 227
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.80 E-value=30 Score=30.55 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=55.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhh------CCHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRC------GTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+ .....+.....+.-|+.++.. .++.+++++..++..-..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999988887644 455666566778888887753 367999999999886553
No 228
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.00 E-value=7.9 Score=27.00 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=11.4
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999974
No 229
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=41.80 E-value=62 Score=28.75 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHH-HHHHhcC---CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRP-LVQLLSY---PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|+ +.++.++..|+..|-.+.+.. ...+..++....+.. |++++.. ++..++..++..+...+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4688999999998 589999999999999988764 455666766677777 7888742 24578888888887654
No 230
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.41 E-value=33 Score=32.66 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|.+.++.++..|+..|-.+.+... ..+..++....+..|+++++. .+..+++.++..+...+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999988886533 245556666667777777754 46788899988887765
No 231
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.47 E-value=44 Score=31.53 Aligned_cols=73 Identities=7% Similarity=0.120 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc
Q 006494 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS 431 (643)
Q Consensus 359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 431 (643)
.+.++..|.+.|.+.++.++..|+..|-.+.+.. ...+..++....+..|+++++. .+..++..++..+...+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999988764 3345566666677778887753 46788888888776654
No 232
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.79 E-value=1.8e+02 Score=34.77 Aligned_cols=120 Identities=10% Similarity=-0.001 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHc--cCCHHHHHHHHHHHHHccccc------cccchhhccCCh
Q 006494 416 DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ--NGTNEARENSAAALFSLSMLD------ENRVMVGNLNGI 487 (643)
Q Consensus 416 ~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~Aa~~L~~Ls~~~------~~k~~i~~~g~i 487 (643)
+...+..|-..|..+..+ ..+...+...|. +.+..+|..|+.+|.+..... +.|..|.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~---------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK---------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH---------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHhC---------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 556677777666554322 224444444443 347889999999998865221 1222221
Q ss_pred HHHHHHccc-------CChhhHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494 488 PPLVNLLRY-------GSIRGKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555 (643)
Q Consensus 488 ~~Lv~lL~s-------~~~~~k~~A~~aL~nLs~--~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~ 555 (643)
..|+.++.+ ....++...+.++..+.. .++.. .+.++.|++++.. +....+.++.+|..|+.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 334444432 245566667777777765 34333 3567788888865 44567788888888875
No 233
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.03 E-value=45 Score=31.68 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhc
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELG 595 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~ 595 (643)
++..|.+-|.+.++.++..|+.+|-.+..+ ......|.+...+..|+.++.. .++.+++.++.++....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 344566677778889999999999999987 3456777777788888888865 45788999888876654
No 234
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=38.91 E-value=1e+02 Score=32.12 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHH-HHhcCCCHHHHHHHHHHHHhcccChhhHHHHH-hcCChHHHHHHHcc
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLV-QLLSYPDSKIQEHTVTALLNLSLDETNKRHIA-REGAIPAIIEILQN 455 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~ 455 (643)
+..++..+|.+..+.+.. +.+..++ ..+....+..+-.+++++.|+..++.....++ .......+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666777666543322 2223233 23334567788889999999998887444444 33234566665531
Q ss_pred --------CCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcc---------cCChhhHHHHHHHHHHhhcC
Q 006494 456 --------GTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLR---------YGSIRGKKDAATALFNLSIN 515 (643)
Q Consensus 456 --------~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~---------s~~~~~k~~A~~aL~nLs~~ 515 (643)
.+..++..++.+++|+|.... .+.. ......++.++. ..+.+....++.||.+|...
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 134578888889999985322 1111 233455666665 24778888999999999863
No 235
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=38.78 E-value=15 Score=35.89 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=33.2
Q ss_pred CCCCCCCCcccCCCCCCc--hhhhHHHHHHHHhhccccCCCCCCCC
Q 006494 307 HKTCPKTGQILDHLSLAP--NYALRNLIVQWCEKNNVELPKKDTNT 350 (643)
Q Consensus 307 ~~~cP~~~~~l~~~~l~p--n~~lr~lI~~w~~~~~~~~p~~~~~~ 350 (643)
...||+|...+.....+| +...+..|..|...++..+|....+.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 467999999988776666 45568889999987766677766544
No 236
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=38.06 E-value=17 Score=29.70 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=27.9
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN 306 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~ 306 (643)
.+.||+|+..+....+++ +...+..|+.|...+
T Consensus 57 ~~~cP~~~~~l~~~~L~p--n~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRP--NTELKEKIQRWLAER 89 (98)
T ss_dssp SCBCTTTCSBCCTTTSEE--CHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCChhhceE--cHHHHHHHHHHHHHc
Confidence 578999999998776666 778899999999864
No 237
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=37.51 E-value=5.7e+02 Score=30.10 Aligned_cols=213 Identities=11% Similarity=0.057 Sum_probs=117.9
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhc
Q 006494 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGN 483 (643)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 483 (643)
+..++..+.+++.+.+..|-..|..+-.+++. ...+..+|.. .++.+|..|+.+|.+........-.-.+
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 44566666667777777788888776655433 3333334433 4789999999999887532211100000
Q ss_pred cCCh-HHHHHHccc---C------ChhhHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494 484 LNGI-PPLVNLLRY---G------SIRGKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ 551 (643)
Q Consensus 484 ~g~i-~~Lv~lL~s---~------~~~~k~~A~~aL~nLs~--~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~ 551 (643)
...+ ..|+.++.. + ++......+.++..+.. .++.. .+.++-+++++.. ++...+..+.+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 1111 233444321 1 23444555566666653 44433 3456667777653 3455677888888
Q ss_pred HHhCC-hh-------------hHHHHHhcCcHHHHHH----HHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Q 006494 552 LLASH-PE-------------GRNEIGRLSFIETLVE----IIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYE 612 (643)
Q Consensus 552 nLa~~-~~-------------~~~~i~~~g~i~~Lv~----lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~ 612 (643)
.|+.. .+ .+..+.+ .++.++. +|.. .++.....++.+|.....--+ ...+.+.+.++
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~ 250 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLIS 250 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHH
Confidence 88764 11 1222322 2344444 3433 566666777788877766422 12345567777
Q ss_pred HHH-HHHhhCCHHHHHHHHHHHHHhhh
Q 006494 613 HLV-EITRCGTNRGQRKANSLLQHMSK 638 (643)
Q Consensus 613 ~L~-~ll~~g~~~~k~~A~~lL~~l~~ 638 (643)
.|+ .++ +++..+..|..+|..+..
T Consensus 251 ~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 251 TLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 774 443 567889999988877643
No 238
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=36.83 E-value=40 Score=29.38 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=57.8
Q ss_pred eeccccCCccCCCCCCCCc---hhHHHHHHHHHHHHHhccCCCcchhhhhHHHHHHHHHhhHHHHHHHHhccC----CCC
Q 006494 7 VMEGATGENQNGVSSSLNE---CDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDG----QVS 79 (643)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~l~~~i~~~~~~~~~~~k~~~~l~r~~~ll~p~leel~~~~~----~~~ 79 (643)
=++|+-++++-+.++..++ ...+..++-.|..+|..|... ..-+++..|...+....--|+.|-.... .-.
T Consensus 14 dl~~~~~~~~~~~~~~~p~~~aI~~V~~eVd~L~~eV~~F~G~--~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aR 91 (142)
T 3a8y_C 14 DLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGN--RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAAR 91 (142)
T ss_dssp --CCCCCCBTTTCCCSSHHHHHHHHHHHHHHHHHHHHHTCCSC--TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHH
T ss_pred hHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHH
Confidence 3678999999988665544 445666888899999988443 3456667777755555555555532110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 006494 80 SEALNCLANLKKPLLAAKKLLKDCNYGS 107 (643)
Q Consensus 80 ~~~~~~l~~L~~~l~~ak~Ll~~c~~~S 107 (643)
..++...+.+-..|+..+...+.|+.+.
T Consensus 92 K~aVk~VQ~~Le~LD~k~~e~~~~~~a~ 119 (142)
T 3a8y_C 92 KQAVRLAQNILSYLDLKSDEWEYCKAAR 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHCBCCC-----
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2455666666666666666667776443
No 239
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=36.49 E-value=12 Score=30.26 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=35.5
Q ss_pred CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
..+-|-.|-.-.+ =.+..+.|-.|+.|+...+.. ...||+|..+|...-
T Consensus 27 G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCS
T ss_pred CcccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcce
Confidence 3456777765444 234455788999999998876 578999999998643
No 240
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=36.16 E-value=13 Score=26.61 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.9
Q ss_pred CCCCCcccCccCcc
Q 006494 267 MLVPHEFLCPVTLE 280 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~ 280 (643)
..+|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 36899999999975
No 241
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.74 E-value=11 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=11.5
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999975
No 242
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=34.98 E-value=14 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhccCCCCH---HHHHHHHHHHHHHHHHHHHHHhcc
Q 006494 63 LLVPLLEEIRELDGQVSS---EALNCLANLKKPLLAAKKLLKDCN 104 (643)
Q Consensus 63 ll~p~leel~~~~~~~~~---~~~~~l~~L~~~l~~ak~Ll~~c~ 104 (643)
.|..++||+... ..| ....+.+.|..-+..|+.|++.|.
T Consensus 15 ~LL~VIeEmgkd---IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKE---IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 355677887431 112 235588999999999999999994
No 243
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.22 E-value=62 Score=30.45 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=51.7
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhc
Q 006494 527 IIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELG 595 (643)
Q Consensus 527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~ 595 (643)
++..|.+-|.+.++.++..|+.+|-.+..+ ......|.+...+..|+.++.+ .++.+++.++..+..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344456667778889999999999999887 3456677777788888888865 45788888887765544
No 244
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=32.55 E-value=35 Score=26.56 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCcccCccCcccccCCeecCC----cccccHHhHHHHHhc----CCCCCCCC
Q 006494 270 PHEFLCPVTLEIMTDPVIVAT----GQTYERESIQRWLNS----NHKTCPKT 313 (643)
Q Consensus 270 p~~f~Cpi~~~~m~dPv~~~~----g~t~~r~~I~~w~~~----~~~~cP~~ 313 (643)
-..++|.+|.+-+.|...+.| +|.||-.|-...++. +...||.-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 356899999999999887754 799998877777752 23457753
No 245
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.22 E-value=1.9e+02 Score=30.19 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=79.9
Q ss_pred cCChhhHHHHHHHHHHhhcCCCchHHHHhc-CcHHHHHHHhcc--------CChhhHHHHHHHHHHHhCChhh-HHHHHh
Q 006494 496 YGSIRGKKDAATALFNLSINQSNKSRAIKA-GIIPSLLKLLED--------KALGMVDEALSILQLLASHPEG-RNEIGR 565 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~~-G~v~~Lv~lL~~--------~~~~~~~~Al~iL~nLa~~~~~-~~~i~~ 565 (643)
+..+.....+++++.||-.++.....++.. .....+++.+.. .+..++-.+..++.|++..... +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446778888999999999988855555443 335666666532 1334666677788888874210 10 1
Q ss_pred cCcHHHHHHHHh---------cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh--hCCHHHHHHHHHH
Q 006494 566 LSFIETLVEIIK---------NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR--CGTNRGQRKANSL 632 (643)
Q Consensus 566 ~g~i~~Lv~lL~---------~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~l 632 (643)
...++.+++.+. ..++++...++.+|.+|...++.....+.. +..+..... ...+|.+.-+..+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHhc
Confidence 234556677665 246777788888888888766655544332 333333332 2367777766543
No 246
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.17 E-value=27 Score=29.49 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=39.7
Q ss_pred CCcccCccCcccccC---CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494 270 PHEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS 321 (643)
Q Consensus 270 p~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 321 (643)
|+-|+|..|...+.| +.....|..||+.+..+-|.. ...|-.|++++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 466999999999974 456678999999999887753 237999988876533
No 247
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.10 E-value=17 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.4
Q ss_pred CCCCCcccCccCccc
Q 006494 267 MLVPHEFLCPVTLEI 281 (643)
Q Consensus 267 ~~~p~~f~Cpi~~~~ 281 (643)
..+|+++.||+|+.-
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 368999999999753
No 248
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.83 E-value=15 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=11.4
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999975
No 249
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.13 E-value=85 Score=32.10 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhhChhhHHHHHhhCChHHHH-HHhcCCCHHHHHHHHHHHHhcccChhh-HHHHHhcCChHHHHHHHc-
Q 006494 378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLV-QLLSYPDSKIQEHTVTALLNLSLDETN-KRHIAREGAIPAIIEILQ- 454 (643)
Q Consensus 378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~- 454 (643)
+..++..+|.+..+.+.. +.+..++ ..+....+..+-.+++++.|+..++.. +..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 555666677666443321 2233333 233345677888899999999988874 444433222344454442
Q ss_pred ---c----CCHHHHHHHHHHHHHccccccc-cchhhccCChHHHHHHcc---------cCChhhHHHHHHHHHHhhc
Q 006494 455 ---N----GTNEARENSAAALFSLSMLDEN-RVMVGNLNGIPPLVNLLR---------YGSIRGKKDAATALFNLSI 514 (643)
Q Consensus 455 ---~----~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~---------s~~~~~k~~A~~aL~nLs~ 514 (643)
+ .+..++..++.+++|+|..... +.. ......++.++. ..+.+....++.||.+|..
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 1345788888899999853221 111 233455666665 2477888899999999985
No 250
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.03 E-value=15 Score=26.57 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=11.4
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999975
No 251
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.99 E-value=1.2e+02 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=20.1
Q ss_pred CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318 (643)
Q Consensus 269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~ 318 (643)
.+..+.||+|+-+..+ .-...||.|+.+-.
T Consensus 135 ~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 135 IKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 3567889988776652 12358999987643
No 252
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.35 E-value=26 Score=27.29 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccCccCccccc-----CCe-ecCCc--ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494 273 FLCPVTLEIMT-----DPV-IVATG--QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY 326 (643)
Q Consensus 273 f~Cpi~~~~m~-----dPv-~~~~g--~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 326 (643)
-.||||+..+. ..+ ++.-+ ---+|...-+-+.+=...||.|+..+.-..+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 46999987654 111 11111 13466666666665456799999888766655443
No 253
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.92 E-value=23 Score=28.79 Aligned_cols=13 Identities=15% Similarity=0.634 Sum_probs=11.5
Q ss_pred cccHHhHHHHHhc
Q 006494 293 TYERESIQRWLNS 305 (643)
Q Consensus 293 t~~r~~I~~w~~~ 305 (643)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 254
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=27.70 E-value=22 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=26.5
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhc
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS 305 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~ 305 (643)
.+.||+|+..+....+++ +..-+..|+.|...
T Consensus 48 ~~~cP~~~~~l~~~~l~p--n~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEP--VPELKEQIQAWMRE 79 (85)
T ss_dssp CSBCTTTCCBCCGGGCEE--CHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcch--HHHHHHHHHHHHHH
Confidence 478999999988766666 67779999999874
No 255
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.51 E-value=24 Score=28.67 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=11.5
Q ss_pred cccHHhHHHHHhc
Q 006494 293 TYERESIQRWLNS 305 (643)
Q Consensus 293 t~~r~~I~~w~~~ 305 (643)
-|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 256
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.37 E-value=18 Score=27.59 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.9
Q ss_pred CCCCcccCccCccc
Q 006494 268 LVPHEFLCPVTLEI 281 (643)
Q Consensus 268 ~~p~~f~Cpi~~~~ 281 (643)
.+|+++.||+|+.-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 58999999999763
No 257
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.62 E-value=1e+02 Score=31.55 Aligned_cols=130 Identities=11% Similarity=0.063 Sum_probs=77.0
Q ss_pred cCChhhHHHHHHHHHHhhcCCCchHHHHhcC-cHHHHHHHhcc--------CChhhHHHHHHHHHHHhCChhh-HHHHHh
Q 006494 496 YGSIRGKKDAATALFNLSINQSNKSRAIKAG-IIPSLLKLLED--------KALGMVDEALSILQLLASHPEG-RNEIGR 565 (643)
Q Consensus 496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G-~v~~Lv~lL~~--------~~~~~~~~Al~iL~nLa~~~~~-~~~i~~ 565 (643)
+..+.....+++++.||-.++.....++... ....+++.+.. .+..++-.+..++.|++..... +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4466788889999999999888555454322 23445555422 2345666677788888874211 10 1
Q ss_pred cCcHHHHHHHHh---------cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh--hCCHHHHHHHHH
Q 006494 566 LSFIETLVEIIK---------NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR--CGTNRGQRKANS 631 (643)
Q Consensus 566 ~g~i~~Lv~lL~---------~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~ 631 (643)
....+.+++.+. ..++++...++.+|.+|...++.....+. .+..+..... ...+|.+.-+..
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~e 360 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDD 360 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGG---GCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc---CHHHHHHHHHhcccchHHHHHHHh
Confidence 234566777666 24677788888888888876655443332 2333333332 135677766554
No 258
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=25.39 E-value=41 Score=25.55 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred cccCccCcccccCCeecCCcccccHHhHHHHHhcC
Q 006494 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN 306 (643)
Q Consensus 272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~ 306 (643)
...||+|+..+....+.+ +..-+..|++|...+
T Consensus 43 ~~~CP~C~~~~~~~~l~~--n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTP--NYVLKSLIALWCESN 75 (78)
T ss_dssp CCBCTTTCCBCSSCCCEE--CTTTHHHHHHHHHHS
T ss_pred cCCCCCCcCCCChhhCcc--CHHHHHHHHHHHHHc
Confidence 678999999887665555 567789999999864
No 259
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.23 E-value=45 Score=28.27 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=39.3
Q ss_pred CCcccCccCccccc---CCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMT---DPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
|+-|+|..|...+. .+.....|..||..+..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 67899999999885 3667788999999998887643 2389999988864
No 260
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.94 E-value=1.9e+02 Score=29.78 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=94.3
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh--------hc
Q 006494 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL--------SI 514 (643)
Q Consensus 443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL--------s~ 514 (643)
.++++.++.+-.+.+.++|...+..|...... +..+ -..+++.|..+|.+.++.+.+.++.+..++ +.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIEL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788888877777888888888888776531 1111 145778888888888888888776655444 33
Q ss_pred CCCc---hHHHHh--cCcHHHHHHHhccCChhhHHHHHHHHHHHhC--Ch---h-----------------------hHH
Q 006494 515 NQSN---KSRAIK--AGIIPSLLKLLEDKALGMVDEALSILQLLAS--HP---E-----------------------GRN 561 (643)
Q Consensus 515 ~~en---~~~iv~--~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~--~~---~-----------------------~~~ 561 (643)
++.. .....+ ...-..++.++.+.+.++...|++.+..+.. .+ + ...
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~ 217 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYN 217 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHH
Confidence 3322 122222 2234456666777788888888887776551 11 1 011
Q ss_pred HHHh--cCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHH
Q 006494 562 EIGR--LSFIETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILA 604 (643)
Q Consensus 562 ~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~ 604 (643)
.+-+ .+.+..|+.++.. -++..-...+..|..|++..+.....
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~r 264 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE 264 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHH
Confidence 2211 2556777777765 23333344666777777766655443
No 261
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.53 E-value=23 Score=28.32 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=11.6
Q ss_pred CCCCcccCccCcc
Q 006494 268 LVPHEFLCPVTLE 280 (643)
Q Consensus 268 ~~p~~f~Cpi~~~ 280 (643)
.+|+++.||+|+.
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999975
No 262
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.83 E-value=37 Score=28.64 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCcccCccCcccccC-CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTD-PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~d-Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
|+-|.|..|...+.+ +.....|..||+.+..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 577999999988876 5556789999999876644 3689999998874
No 263
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=23.54 E-value=32 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 006494 83 LNCLANLKKPLLAAKKLLKDCN 104 (643)
Q Consensus 83 ~~~l~~L~~~l~~ak~Ll~~c~ 104 (643)
..+.+.|..-+..|+.|+..|.
T Consensus 39 ks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 39 KSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999994
No 264
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=23.14 E-value=5e+02 Score=24.85 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=68.8
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh--------hcC
Q 006494 444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL--------SIN 515 (643)
Q Consensus 444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL--------s~~ 515 (643)
.+++.++.+-.+.+.++|...+..+......+ .-....+++.|..+++++++.+.+.++.+..++ +.+
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~ 128 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSL 128 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566666555567888888888887765221 112245778888889888888888877654443 444
Q ss_pred CCc---hHHHHh--cCcHHHHHHHhccCChhhHHHHHHHHHHHh
Q 006494 516 QSN---KSRAIK--AGIIPSLLKLLEDKALGMVDEALSILQLLA 554 (643)
Q Consensus 516 ~en---~~~iv~--~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa 554 (643)
+.. .....+ ...=..++.++.+.+.++.-.|++.+..+.
T Consensus 129 ~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 129 MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 331 223332 233445667777788889988888887765
No 265
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.43 E-value=1.4e+02 Score=26.30 Aligned_cols=72 Identities=18% Similarity=0.062 Sum_probs=51.8
Q ss_pred CcHHHHHHHHh-cCChHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHH-HHHHHhh-C--CHHHHHHHHHHHHHhhh
Q 006494 567 SFIETLVEIIK-NGTPKNKECATSVLLELGLNN-SYFILAALQYGVYEH-LVEITRC-G--TNRGQRKANSLLQHMSK 638 (643)
Q Consensus 567 g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~-L~~ll~~-g--~~~~k~~A~~lL~~l~~ 638 (643)
.++..|.+-|. +.++.++..|+.+|-.+..+. ......+.....+.- |++++.. + ...+++++..++..-..
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 45667777786 478899999999998888765 445555555567776 7777742 2 35899999998886553
No 266
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.38 E-value=26 Score=32.17 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=39.3
Q ss_pred CCcccCccCcccccC---CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494 270 PHEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319 (643)
Q Consensus 270 p~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 319 (643)
|+-|+|..|...+.+ +.....|+.||..|..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 577999999998875 777788999999998876643 1269999988764
No 267
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.86 E-value=6.9e+02 Score=26.46 Aligned_cols=102 Identities=20% Similarity=0.112 Sum_probs=69.9
Q ss_pred ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCCh--h-hHHHHHHHHHHHhCChhhHHH
Q 006494 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL--G-MVDEALSILQLLASHPEGRNE 562 (643)
Q Consensus 486 ~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~--~-~~~~Al~iL~nLa~~~~~~~~ 562 (643)
.+..++.-|.++.+.....|+.+|. ...-+.-+...+++..|++++.+.+. . ++...=.++..|++..=.|..
T Consensus 117 sve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrr 192 (500)
T 3vld_A 117 SAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRR 192 (500)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHH
Confidence 5678888899998989999998887 44457777789999999999987433 3 666666777788777656666
Q ss_pred HHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494 563 IGRLSFIETLVEIIKNGTPKNKECATSVLL 592 (643)
Q Consensus 563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 592 (643)
+.+ +..|.+..+=.+.++..-..-...|.
T Consensus 193 il~-nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 193 LFD-NNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp HHT-TTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHH-HhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 664 45565555444445444333333333
No 268
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.05 E-value=2.7e+02 Score=24.17 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=52.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM 636 (643)
Q Consensus 567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l 636 (643)
.++..+-+.++...+.-|-.++.++-.++.+.+..-......++.+.+......+++..|.+-..++..=
T Consensus 43 ~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 43 YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566667777778889999999999999876543333444567777777888888899998888877653
Done!