Query 006495
Match_columns 643
No_of_seqs 380 out of 1204
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 2E-144 4E-149 1190.2 42.6 576 7-624 1-620 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 1.3E-89 2.9E-94 770.8 24.7 315 78-610 523-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 3.1E-76 6.7E-81 617.6 27.6 225 371-604 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 3.7E-64 8E-69 534.6 19.0 313 78-607 16-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 2.1E-30 4.5E-35 265.6 10.3 173 414-596 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 6.2E-29 1.3E-33 233.4 11.0 142 372-514 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 9.8E-18 2.1E-22 173.0 4.5 166 414-598 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 2.1E-06 4.5E-11 90.0 14.0 70 412-490 116-189 (283)
9 PRK05421 hypothetical protein; 98.3 7.6E-06 1.6E-10 84.5 13.5 126 417-598 135-261 (263)
10 PF03372 Exo_endo_phos: Endonu 98.1 6.4E-07 1.4E-11 85.7 1.1 97 382-494 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.6 0.00044 9.5E-09 72.2 10.5 55 417-488 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.6 0.0004 8.7E-09 71.2 9.9 63 417-489 89-154 (268)
13 TIGR00633 xth exodeoxyribonucl 97.4 0.0012 2.7E-08 66.2 11.0 34 100-137 2-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0029 6.4E-08 79.5 12.3 70 414-489 130-206 (1452)
15 PLN03144 Carbon catabolite rep 96.0 0.031 6.8E-07 64.8 10.0 63 429-506 417-480 (606)
16 TIGR00195 exoDNase_III exodeox 95.5 0.075 1.6E-06 54.1 9.4 34 100-137 2-35 (254)
17 COG3021 Uncharacterized protei 95.2 0.12 2.5E-06 55.6 10.0 132 415-598 173-307 (309)
18 PRK13911 exodeoxyribonuclease 95.1 0.25 5.4E-06 51.3 12.1 35 100-137 2-36 (250)
19 PF14529 Exo_endo_phos_2: Endo 94.2 0.067 1.5E-06 47.2 4.6 33 561-593 86-119 (119)
20 KOG3873 Sphingomyelinase famil 94.2 0.23 5E-06 54.3 9.4 198 376-600 73-294 (422)
21 smart00476 DNaseIc deoxyribonu 93.6 0.17 3.8E-06 53.5 7.1 44 430-489 143-187 (276)
22 PRK13911 exodeoxyribonuclease 92.5 0.054 1.2E-06 56.2 1.2 33 564-596 215-249 (250)
23 COG0708 XthA Exonuclease III [ 90.8 0.047 1E-06 57.4 -1.3 33 100-137 2-35 (261)
24 KOG2756 Predicted Mg2+-depende 89.9 0.76 1.7E-05 48.8 6.6 63 420-492 195-257 (349)
25 KOG2338 Transcriptional effect 85.7 1.3 2.9E-05 50.2 5.7 94 386-489 204-303 (495)
26 PRK11756 exonuclease III; Prov 79.2 0.52 1.1E-05 48.4 -0.5 34 100-137 2-35 (268)
27 TIGR00633 xth exodeoxyribonucl 73.5 1.3 2.9E-05 44.4 0.7 53 429-491 100-154 (255)
28 TIGR00195 exoDNase_III exodeox 70.4 1.5 3.3E-05 44.6 0.2 53 430-492 98-152 (254)
29 PRK15251 cytolethal distending 66.1 5.1 0.00011 42.6 3.1 55 416-489 141-195 (271)
30 PRK15251 cytolethal distending 65.5 13 0.00029 39.6 6.0 38 99-138 25-66 (271)
31 PF03372 Exo_endo_phos: Endonu 62.1 2.2 4.7E-05 40.7 -0.5 33 102-137 1-38 (249)
32 PRK05421 hypothetical protein; 58.8 5.5 0.00012 41.4 1.8 35 99-137 44-78 (263)
33 cd01251 PH_centaurin_alpha Cen 28.6 41 0.00089 30.2 2.2 34 133-167 69-102 (103)
34 PF07494 Reg_prop: Two compone 23.0 36 0.00079 22.9 0.6 8 98-105 17-24 (24)
35 KOG3870 Uncharacterized conser 22.7 35 0.00077 38.4 0.7 51 475-543 349-399 (434)
36 PF08053 Tna_leader: Tryptopha 22.2 14 0.00031 25.0 -1.5 14 23-36 8-21 (24)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.8e-144 Score=1190.22 Aligned_cols=576 Identities=46% Similarity=0.828 Sum_probs=475.4
Q ss_pred cccccCCCCcccchHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcchhhhhcccC--------Ccccccc------c---
Q 006495 7 TQRSKHHQPELFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR--------VPKEEEA------Q--- 69 (643)
Q Consensus 7 m~~~~~~~~~~~Wp~~v~~Kwlni~~~~~df~ad~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~--- 69 (643)
||.+++|++|+||||+||||||||++|++||+||+.+++.++|+|.+++...+.. +.+.+++ +
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 8889999999999999999999999999999999988755556666554432111 1111111 1
Q ss_pred CCCCCChhHHhhhcchhhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeecCCCcccccC
Q 006495 70 YDPNETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAE 149 (643)
Q Consensus 70 ~~~~~~~~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEiV~Lna~~vl~~~ 149 (643)
+.+++..+++|||++|++|+|||+++++|||||||||||+.|+.+++|.+||..++|||||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 23567779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCc
Q 006495 150 DSRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKP 229 (643)
Q Consensus 150 d~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (643)
++.|+++|+.+|+++||+..+..++++|||+||||++ .+++ +++|++.|+|+ ||+++.+..|....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~-- 227 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAAT-- 227 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhcccccccccc--
Confidence 9999999999999999999999999999999999998 5554 78999999876 666665443211111
Q ss_pred ccccccccccccccccccCCcchhhhccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCC
Q 006495 230 VKMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPP 309 (643)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~ 309 (643)
.+.......+++|+++++ ++ .+..+...++++|+|+||+|+||||.|||+|
T Consensus 228 -----------------~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p 278 (621)
T PLN03191 228 -----------------GCPSLEPERNKNIGWPEH-----SL-------DATPQVVSSNSKLRRVFSSSARLGFKWPENP 278 (621)
T ss_pred -----------------cccccchhhccccCCccc-----cc-------ccCcccccccccceeeeccccccccCCCCCc
Confidence 011111345566666531 11 1112223467899999999999999999999
Q ss_pred ccccccccccCCCccccc-cccccc-ccc-------------ccccCCCCCccc-chhHHHHHHhhhH----HHH--Hhh
Q 006495 310 LNLLTQKVLERPNSLKTV-KSFKTS-NSF-------------RRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKR 367 (643)
Q Consensus 310 ~~~~~~~~~~~~~s~~~~-~~~~~~-~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~ 367 (643)
|+|++|+...+.++++.. .+|... .++ ....+++++.+. ..++..++++++. +.. ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T PLN03191 279 SLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCR 358 (621)
T ss_pred cccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhc
Confidence 999999876665544331 111110 000 001122222222 2223344444444 332 345
Q ss_pred cCCCCeEEEEeeehhheeeeeeeeccccccccceeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCCCCccH
Q 006495 368 KRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE 447 (643)
Q Consensus 368 ~~~~~Y~~v~SkqMvGI~L~VfvR~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~ 447 (643)
....+|++|.|+|||||+|+||||++++++|++|++++|+||+||++||||||+|+|+|++|+|||||||||||++++++
T Consensus 359 ~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~ 438 (621)
T PLN03191 359 KVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAE 438 (621)
T ss_pred cCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCccc
Q 006495 448 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 527 (643)
Q Consensus 448 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 527 (643)
++||+|+.+|++++.|........|..|.+||+|||||||||||++++++++++|++++|+.||++|||+.|+++|++|.
T Consensus 439 ~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 518 (621)
T PLN03191 439 QRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518 (621)
T ss_pred HHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccC
Confidence 99999999999999997654455688999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccCCCcccccCCccccCCC--CCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEecCh
Q 006495 528 GWSEGTLIFAPTYKYELNSEKYYGED--PKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSP 605 (643)
Q Consensus 528 gf~Eg~I~FpPTYKy~~~sd~Y~~~~--~~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~v~~~ 605 (643)
||+||+|+|||||||+.|++.|++.+ ++.++|+|||||||||++++++++.|.+.++++||||||+|+|.++|+++++
T Consensus 519 GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~ 598 (621)
T PLN03191 519 GWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDH 598 (621)
T ss_pred CcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCH
Confidence 99999999999999999999998643 4568999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhh---hcchhh
Q 006495 606 RKLQRALTLTDAE---IENEDV 624 (643)
Q Consensus 606 ~klqr~l~~~~~~---~~~~~~ 624 (643)
+|+||++++++++ |+||..
T Consensus 599 ~k~q~~~~~~~a~~~~~~~~~~ 620 (621)
T PLN03191 599 RKLQRALNVNSAAASAVHPEPS 620 (621)
T ss_pred HHHHhhhhcchhhhhccCCccC
Confidence 9999999999999 888754
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-89 Score=770.82 Aligned_cols=315 Identities=42% Similarity=0.728 Sum_probs=292.1
Q ss_pred HHhhhcchhhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeecCCCcccccCCC
Q 006495 78 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAEDS 151 (643)
Q Consensus 78 ~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~------~~~DIyVlGfQEiV~Lna~~vl~~~d~ 151 (643)
.|+.|.+| |+..++||||||||||||+.+....||.+||++. .++|||||||||||+||||||+.++ +
T Consensus 523 ~L~er~~e-----yt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As-~ 596 (1080)
T KOG0566|consen 523 ELRERRSE-----YTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAS-T 596 (1080)
T ss_pred HHHHhhhh-----hccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccC-h
Confidence 45555554 9999999999999999997766667899999953 3799999999999999999999886 5
Q ss_pred CchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCccc
Q 006495 152 RPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVK 231 (643)
Q Consensus 152 ~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (643)
...+.|++.|+++||+.
T Consensus 597 tk~~~Wee~i~~~Ln~~--------------------------------------------------------------- 613 (1080)
T KOG0566|consen 597 TKRRFWEEKILKTLNRY--------------------------------------------------------------- 613 (1080)
T ss_pred HHHHHHHHHHHHHhcCC---------------------------------------------------------------
Confidence 56899999999999883
Q ss_pred ccccccccccccccccCCcchhhhccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCcc
Q 006495 232 MFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLN 311 (643)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~ 311 (643)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhheeeeeeee
Q 006495 312 LLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVR 391 (643)
Q Consensus 312 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~VfvR 391 (643)
..+|+++.|.||||++|.+|+|
T Consensus 614 ----------------------------------------------------------~~kYvlL~s~QlvGv~L~iF~r 635 (1080)
T KOG0566|consen 614 ----------------------------------------------------------KNKYVLLRSEQLVGVCLLLFIR 635 (1080)
T ss_pred ----------------------------------------------------------CCceEEEehhhhheeeEEEEEc
Confidence 0258999999999999999999
Q ss_pred ccccccccceeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCC
Q 006495 392 RSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGF 471 (643)
Q Consensus 392 ~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~ 471 (643)
.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+. .+||.||.+|.++++|+ .
T Consensus 636 ~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv--~ERn~DY~tI~r~l~Fp------~ 707 (1080)
T KOG0566|consen 636 PDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNV--EERNEDYKTIARKLRFP------R 707 (1080)
T ss_pred ccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchH--hhhhhhHHHHHHhcccc------C
Confidence 999999999999999999999999999999999999999999999999999874 68999999999999995 3
Q ss_pred CcccCCcceEEEeCccCccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccC
Q 006495 472 PKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG 551 (643)
Q Consensus 472 P~~I~dhD~VfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~ 551 (643)
...|.+||+|||||||||||++++++|+.+|.+++|+.|+++|||++|+.+|.+|.||.|++|+|+|||||+.||++||+
T Consensus 708 Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDT 787 (1080)
T KOG0566|consen 708 GRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDT 787 (1080)
T ss_pred CccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEecChhhhhh
Q 006495 552 EDPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQR 610 (643)
Q Consensus 552 ~~~~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~v~~~~klqr 610 (643)
++|+|+|||||||||++..+.++.|.+.|+++||||||+|+|.++|..++.+|..+
T Consensus 788 ---SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 788 ---SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred ---chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999877554
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=3.1e-76 Score=617.61 Aligned_cols=225 Identities=38% Similarity=0.691 Sum_probs=205.9
Q ss_pred CCeEEEEeeehhheeeeeeeeccccccccceeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHH
Q 006495 371 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 450 (643)
Q Consensus 371 ~~Y~~v~SkqMvGI~L~VfvR~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rR 450 (643)
..|++|++.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||++|+.+ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999875 6799
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh-HHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCc
Q 006495 451 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY-EKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 529 (643)
Q Consensus 451 N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 529 (643)
|+|+.+|++.+.|+... ...+.+||+|||||||||||++++ ++++++|++++|..||++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999885321 113678999999999999999988 8999999999999999999999999999999999
Q ss_pred ccCCcccCCCcccc-cCCccccCCCCCCCCCCCccccceeecC--CCeEEEe-ecc-ccCCCCCCCCceeEEEEEEEecC
Q 006495 530 SEGTLIFAPTYKYE-LNSEKYYGEDPKVGRRNPSWCDRILSYG--KGMRLLN-YRR-NEIKMSDHRPVTATYMAEVEVFS 604 (643)
Q Consensus 530 ~Eg~I~FpPTYKy~-~~sd~Y~~~~~~~kkR~PAWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHRPV~A~F~v~V~v~~ 604 (643)
+|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.+.+..++
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~---~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT---SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC---cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 99999999999999 99999985 46889999999999994 4566665 987 47999999999999999998653
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-64 Score=534.57 Aligned_cols=313 Identities=36% Similarity=0.597 Sum_probs=281.1
Q ss_pred HHhhhcchhhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeecCCCcccccCCCCc
Q 006495 78 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSRP 153 (643)
Q Consensus 78 ~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~----~~~~DIyVlGfQEiV~Lna~~vl~~~d~~~ 153 (643)
.++.++++ |+-.+++.|||+|+|++|+.|. .++..||++ .+.+|+||+||||+|+|+++.|++++....
T Consensus 16 ~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~r 88 (460)
T COG5411 16 VLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDR 88 (460)
T ss_pred HHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCcccc
Confidence 45666655 9999999999999999998773 478999997 246899999999999999999998875444
Q ss_pred hhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCccccc
Q 006495 154 VSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMF 233 (643)
Q Consensus 154 ~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (643)
...|++.+-.+||. ..
T Consensus 89 l~~wes~~~~~Ln~-~~--------------------------------------------------------------- 104 (460)
T COG5411 89 LRIWESKVLDCLNG-AQ--------------------------------------------------------------- 104 (460)
T ss_pred cchhHHHHHHHhcc-cc---------------------------------------------------------------
Confidence 57888888877776 11
Q ss_pred ccccccccccccccCCcchhhhccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCcccc
Q 006495 234 TNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLL 313 (643)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~ 313 (643)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhheeeeeeeecc
Q 006495 314 TQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRS 393 (643)
Q Consensus 314 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~VfvR~~ 393 (643)
...+|.++.+.||.|++|.||.+.+
T Consensus 105 -------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~~ 129 (460)
T COG5411 105 -------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLAT 129 (460)
T ss_pred -------------------------------------------------------cCCceEEecchhccCcceEEeeecc
Confidence 0236778888899999999999999
Q ss_pred ccccccceeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCc
Q 006495 394 LRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPK 473 (643)
Q Consensus 394 l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~ 473 (643)
-.+.+.+|....-+||++|..+|||+|+++|+...++||||+|||+||..+ .++|+.||..|.+.+.|+. ..
T Consensus 130 ~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~------g~ 201 (460)
T COG5411 130 NLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR------GL 201 (460)
T ss_pred ccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC------Cc
Confidence 999999999999999999999999999999999999999999999999875 5789999999999999953 35
Q ss_pred ccCCcceEEEeCccCccccCChHHHHHHHhhhc--hhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccC
Q 006495 474 SICDHERIIWLGDLNYRINLPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG 551 (643)
Q Consensus 474 ~I~dhD~VfW~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~ 551 (643)
.|.+||+|||+|||||||++.+++++..+...+ ...|+++|||..|+..|.+|.||+|..|+|||||||+.|+++|++
T Consensus 202 ~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydt 281 (460)
T COG5411 202 RIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDT 281 (460)
T ss_pred eecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCccccc
Confidence 789999999999999999999999998887777 788999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCccccceeecCCCeEEEeecccc-CCCCCCCCceeEEEEEEEecChhh
Q 006495 552 EDPKVGRRNPSWCDRILSYGKGMRLLNYRRNE-IKMSDHRPVTATYMAEVEVFSPRK 607 (643)
Q Consensus 552 ~~~~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e-~~~SDHRPV~A~F~v~V~v~~~~k 607 (643)
+ .|.|+||||||||+++..+++++|.+.. +++||||||+|+|.+.+.++++.+
T Consensus 282 s---dk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 282 S---DKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred c---ccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 4 5799999999999999889999999977 999999999999999999998754
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=2.1e-30 Score=265.63 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=130.0
Q ss_pred ccceeEEEEEEEECCeEEEEEeecCCCCCCCccH---------HHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006495 414 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE---------LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 484 (643)
Q Consensus 414 lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~---------~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~ 484 (643)
++.||.+.+|++|+++.|||||+||.++..+.+. ..|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 7899999999999999999999999999987642 4688899999875 21 123457899999
Q ss_pred CccCccccCCh-H-HHH------HHHh------hhchhHHhhhhhhhHHHhc-------------CCcccCcccCCcccC
Q 006495 485 GDLNYRINLPY-E-KTR------ELIS------KKQWSKLAESDQLLRELRK-------------GRAFDGWSEGTLIFA 537 (643)
Q Consensus 485 GDLNYRI~l~~-~-~v~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 537 (643)
||||||++... . -.+ ..++ ...|.+||++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 99999999532 1 111 1111 2458899999999999985 678889999999999
Q ss_pred CCcccccC---C-------------ccccCCC---------------------------------------CCCCCCCCc
Q 006495 538 PTYKYELN---S-------------EKYYGED---------------------------------------PKVGRRNPS 562 (643)
Q Consensus 538 PTYKy~~~---s-------------d~Y~~~~---------------------------------------~~~kkR~PA 562 (643)
||||-... + ..|...+ .+.+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 99993211 0 0111000 123589999
Q ss_pred cccceeecCCC----------------------------eEEEeeccccCCCCCCCCceeEE
Q 006495 563 WCDRILSYGKG----------------------------MRLLNYRRNEIKMSDHRPVTATY 596 (643)
Q Consensus 563 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHRPV~A~F 596 (643)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999997432 23467889999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.2e-29 Score=233.38 Aligned_cols=142 Identities=47% Similarity=0.720 Sum_probs=128.8
Q ss_pred CeEEEEeeehhheeeeeeeeccccccccceeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHHh
Q 006495 372 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 451 (643)
Q Consensus 372 ~Y~~v~SkqMvGI~L~VfvR~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN 451 (643)
.|++++++||+|+++.+|++.++..++.+++++++++|+||++||||+|+++|.++++.+|||||||++|.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998754 3399
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccCC-cceEEEeCccCccccCC-hHHHHHHHhhhchhHHhhhh
Q 006495 452 ADVHEIHRRTHFRSHSEIGFPKSICD-HERIIWLGDLNYRINLP-YEKTRELISKKQWSKLAESD 514 (643)
Q Consensus 452 ~D~~eIl~r~~F~~~~~~~~P~~I~d-hD~VfW~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 514 (643)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|..|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999976544445555554 89999999999999988 88899999999999888765
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.69 E-value=9.8e-18 Score=173.03 Aligned_cols=166 Identities=26% Similarity=0.403 Sum_probs=107.9
Q ss_pred ccceeEEEEEEEECCeEEEEEeecCCCCCCCcc---------HHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006495 414 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 484 (643)
Q Consensus 414 lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d---------~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~ 484 (643)
++.||-.-.++.|++.-|.|||.||-+...+-. -..|.+.+.-+|.++.= .-+..+.+|.|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 577999999999999999999999976543321 13455666655555321 11345689999
Q ss_pred CccCccccCCh-----------HHHH--------HH---------------Hhhhchh-------------HHhhhhhhh
Q 006495 485 GDLNYRINLPY-----------EKTR--------EL---------------ISKKQWS-------------KLAESDQLL 517 (643)
Q Consensus 485 GDLNYRI~l~~-----------~~v~--------~l---------------I~~~~~~-------------~LL~~DQL~ 517 (643)
|||||||+... +.+. ++ |+++.|+ .++.+|.-.
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkEl 303 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKEL 303 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchHH
Confidence 99999998421 1111 11 1122221 222222110
Q ss_pred HHHhcCCcccC-cccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCC----------eEEEeecc--ccC
Q 006495 518 RELRKGRAFDG-WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKG----------MRLLNYRR--NEI 584 (643)
Q Consensus 518 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~~----------i~~l~Y~s--~e~ 584 (643)
..|.. ..|..|.|||||.|..+... .+...+.|+||||||||+.... -+.+.|.. .|.
T Consensus 304 ------~nf~~kl~E~~i~FpPsypysed~~~---~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~ 374 (391)
T KOG1976|consen 304 ------ANFAFKLKEETIFFPPSYPYSEDDSG---KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEK 374 (391)
T ss_pred ------HHHHHHHhheeecCCCCCCCCcCccc---hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccccc
Confidence 12333 68999999999999965432 1112368999999999997531 23467887 478
Q ss_pred CCCCCCCceeEEEE
Q 006495 585 KMSDHRPVTATYMA 598 (643)
Q Consensus 585 ~~SDHRPV~A~F~v 598 (643)
++-|||||...|.+
T Consensus 375 c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 375 CVGDHKPVFLHASI 388 (391)
T ss_pred ccCCCcceEEEEee
Confidence 99999999998865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.47 E-value=2.1e-06 Score=90.03 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=51.9
Q ss_pred ccccceeEEEEEEEECCeEEEEEeecCCCCCC----CccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcc
Q 006495 412 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK----DGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDL 487 (643)
Q Consensus 412 G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek----~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDL 487 (643)
....+||.+.+++.+.+..|.|+|+||.+... ......|..++.+|.+.+.- ...| ..+.+|++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~-----~~~~----~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS-----KNIP----KDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh-----ccCC----CCceEEEEeeC
Confidence 34678999999999999999999999998532 11246799999999875321 1122 23569999999
Q ss_pred Ccc
Q 006495 488 NYR 490 (643)
Q Consensus 488 NYR 490 (643)
|..
T Consensus 187 N~~ 189 (283)
T TIGR03395 187 NVN 189 (283)
T ss_pred CCC
Confidence 974
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.32 E-value=7.6e-06 Score=84.47 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=76.2
Q ss_pred eeEEEEEEEE-CCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh
Q 006495 417 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY 495 (643)
Q Consensus 417 KGaVsVs~~i-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l~~ 495 (643)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. ... ..+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~~--------~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HHS--------GPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hCC--------CCEEEEcccccCcccch
Confidence 7889999888 566799999999865332 3468888888876431 111 24999999994111000
Q ss_pred HHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCCeE
Q 006495 496 EKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMR 575 (643)
Q Consensus 496 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~~i~ 575 (643)
... ..+++ +. |+. ..+|++.-.+ ..+ ..| -|+||.+ ++.
T Consensus 200 ~~l---------~~~~~------~~-------~l~--~~~~~~~~~~----~~~-------~~~----ID~I~~~--~~~ 238 (263)
T PRK05421 200 NAL---------KRFAR------EL-------GLK--EVRFTDDQRR----RAF-------GRP----LDFVFYR--GLN 238 (263)
T ss_pred HHH---------HHHHH------Hc-------CCC--ccCcCCcccc----ccc-------CCC----cceEEEC--CcE
Confidence 011 11111 00 111 1234432211 011 134 5999974 677
Q ss_pred EEeeccccCCCCCCCCceeEEEE
Q 006495 576 LLNYRRNEIKMSDHRPVTATYMA 598 (643)
Q Consensus 576 ~l~Y~s~e~~~SDHRPV~A~F~v 598 (643)
..++...+...|||+||.|.|.+
T Consensus 239 v~~~~v~~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 239 VSKASVLVTRASDHNPLLVEFSL 261 (263)
T ss_pred EEEEEcCCCCCCCccCEEEEEEe
Confidence 77777777889999999999875
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.15 E-value=6.4e-07 Score=85.73 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=54.9
Q ss_pred hheeeeeeeeccccccccceeEeEEeeccc---ccccceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHHhhhHHHHH
Q 006495 382 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIH 458 (643)
Q Consensus 382 vGI~L~VfvR~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl 458 (643)
.+..++|+.|.++...+........+.+.. ....+++.+.+++. +..|+++|+|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 566778888887655444433333233332 23456777777776 9999999999998532 2333333343
Q ss_pred HhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCC
Q 006495 459 RRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLP 494 (643)
Q Consensus 459 ~r~~-F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l~ 494 (643)
..+. +.. ..+ ...+|++||||.+....
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 3221 100 000 01599999999987753
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.57 E-value=0.00044 Score=72.16 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=42.5
Q ss_pred eeEEEEEEEEC-CeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006495 417 KGSVSVSMSIH-QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 488 (643)
Q Consensus 417 KGaVsVs~~i~-~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLN 488 (643)
.|++-+.+... +..|-+||+||.=.+ +.|.++...|+...-+.. -..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~------------~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA------------LNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc------------cCceEEEccCC
Confidence 68899998885 679999999999554 469999999987433321 11599999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.55 E-value=0.0004 Score=71.24 Aligned_cols=63 Identities=8% Similarity=0.165 Sum_probs=36.9
Q ss_pred eeEEEEEEEECCeEEEEEeecCCCCCCCc---cHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006495 417 KGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 489 (643)
Q Consensus 417 KGaVsVs~~i~~Ts~cFVn~HLaAgek~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNY 489 (643)
.+.+.+.+...+..|.|+|+|++.+.... ....|.+.+..|...+.-. . .....+|++||||-
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~--------~~~~pvIl~GDfN~ 154 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE--L--------SPDNPLLIMGDMNI 154 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH--h--------ccCCCEEEEeeccc
Confidence 47788888776556999999998875321 1123434444443321100 0 01234999999996
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.0012 Score=66.19 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=23.1
Q ss_pred EEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006495 100 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 100 ~vGTwNV~G~~p~~~~dL-~~WL~~~~~~DIyVlGfQEi 137 (643)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999953222 244 7787554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.12 E-value=0.0029 Score=79.52 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=42.4
Q ss_pred ccceeEEEEEEEEC----C-eEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcC--CCCCCCCCCCcccCCcceEEEeCc
Q 006495 414 IGNKGSVSVSMSIH----Q-TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH--FRSHSEIGFPKSICDHERIIWLGD 486 (643)
Q Consensus 414 lGNKGaVsVs~~i~----~-Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~--F~~~~~~~~P~~I~dhD~VfW~GD 486 (643)
..+||.+-+.+.+. + ..+-|+|+||...... ..|.+++.+|.+-.. ...... -..+.+...+|++||
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~---~~~~~~~~PvILaGD 203 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYE---QNNDGAEIPFVIAGD 203 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCEEEEee
Confidence 35789999998884 2 5799999999987543 235555665554211 100000 011123356999999
Q ss_pred cCc
Q 006495 487 LNY 489 (643)
Q Consensus 487 LNY 489 (643)
||=
T Consensus 204 FN~ 206 (1452)
T PTZ00297 204 FNI 206 (1452)
T ss_pred CCC
Confidence 994
No 15
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.00 E-value=0.031 Score=64.85 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=43.7
Q ss_pred eEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhc
Q 006495 429 TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQ 506 (643)
Q Consensus 429 Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l~~~~v~~lI~~~~ 506 (643)
..||++|+||..+..-. .-|..+...|++.+. |.. ..+.| ||++||||- .+...+.++|..+.
T Consensus 417 ~~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~--~~~~P--------vIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 417 QLLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA--SADIP--------MLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred cEEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh--cCCCc--------eEEeccCCC---CCCChhhhhhhcCC
Confidence 36999999997665433 357777777776532 210 11233 999999997 77888888887764
No 16
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.46 E-value=0.075 Score=54.09 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=23.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006495 100 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 100 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
.|.||||+|.... ...+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~-~~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRAR-LHKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHh-HHHHHHHHHhc-CCCE--EEEEec
Confidence 5789999994322 12467888554 4588 558996
No 17
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.12 Score=55.59 Aligned_cols=132 Identities=23% Similarity=0.348 Sum_probs=71.0
Q ss_pred cceeEEEEEEEE-CCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccC
Q 006495 415 GNKGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINL 493 (643)
Q Consensus 415 GNKGaVsVs~~i-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~l 493 (643)
+-||++.+.... +++.+..+|.|..-..-.. ...| ++..++.+.+. +..-| ||+.||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~-~~~~-~ql~~l~~~i~-----~~~gp--------vIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGT-DPQR-AQLLELGDQIA-----GHSGP--------VILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCc-cHHH-HHHHHHHHHHH-----cCCCC--------eEEeecCCC---c
Confidence 457777766554 5889999999998543322 2445 66666665421 11122 999999995 2
Q ss_pred ChHHH-HHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcc-ccceeecC
Q 006495 494 PYEKT-RELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSW-CDRILSYG 571 (643)
Q Consensus 494 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAW-CDRIL~~g 571 (643)
+-..+ +.+ ..|...+.. .+.| -.| ..|-|+ . ..|.+.| .|.|+++|
T Consensus 235 pWS~~~~R~------~~l~~~~~~---~~aG-----~~~--~~~~p~--------~--------~~r~~g~PIDhvf~rg 282 (309)
T COG3021 235 PWSRTAKRM------AALGGLRAA---PRAG-----LWE--VRFTPD--------E--------RRRAFGLPIDHVFYRG 282 (309)
T ss_pred chhHHHHHH------HHhcccccc---hhcc-----CCc--cccCHH--------H--------HhhccCCCcceeeecC
Confidence 22221 111 112111111 1111 011 112211 1 1222223 79999998
Q ss_pred CCeEEEeeccccCCCCCCCCceeEEEE
Q 006495 572 KGMRLLNYRRNEIKMSDHRPVTATYMA 598 (643)
Q Consensus 572 ~~i~~l~Y~s~e~~~SDHRPV~A~F~v 598 (643)
.....=.+.+..-|||+||.+.|+.
T Consensus 283 --l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 283 --LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred --cchhhhhhccccCCCCCceEEEEEe
Confidence 3333334456689999999999974
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.14 E-value=0.25 Score=51.32 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.3
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006495 100 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 100 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
.|.||||||.--.....|.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999995332323588999654 4587 788999
No 19
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.22 E-value=0.067 Score=47.24 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=17.3
Q ss_pred CccccceeecCCCeEE-EeeccccCCCCCCCCce
Q 006495 561 PSWCDRILSYGKGMRL-LNYRRNEIKMSDHRPVT 593 (643)
Q Consensus 561 PAWCDRIL~~g~~i~~-l~Y~s~e~~~SDHRPV~ 593 (643)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4448999987643222 11122467889999995
No 20
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=94.21 E-value=0.23 Score=54.31 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=108.6
Q ss_pred EEeeehhheeeeeeeeccccccccc-----eeEeEEeecccccccceeEEEEEEEECCeEEEEEeecCCCCC---CCccH
Q 006495 376 MVSKQMVGIFLTIWVRRSLRRHIQN-----VRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGE---KDGDE 447 (643)
Q Consensus 376 v~SkqMvGI~L~VfvR~~l~~~I~~-----v~vs~VgtGi~G~lGNKGaVsVs~~i~~Ts~cFVn~HLaAge---k~~d~ 447 (643)
..|.-| |-.|+||-|--+..-..+ -.-..+=.| -+.|-||--..++.+.+..+.+.|+||-|-- ++.-.
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 455566 888999988766432221 112222233 4577899888889999999999999998852 22224
Q ss_pred HHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc-CChHHHH--HHHhhhchhHHhhhhhhhHHHhcCC
Q 006495 448 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTR--ELISKKQWSKLAESDQLLRELRKGR 524 (643)
Q Consensus 448 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e~~~g~ 524 (643)
-.|-++.-++.+-++- +-...|.||..||||-+=. ++..-.. .++ ..|..|. -||.-..--++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccc
Confidence 5677666666542111 1123588999999997432 2221111 111 2344432 244322222222
Q ss_pred cccCcccCCcccCCCcccccCCccccCC--CCC--CCCCCCccccceeecCCC--eEEEeec----c---ccCCCCCCCC
Q 006495 525 AFDGWSEGTLIFAPTYKYELNSEKYYGE--DPK--VGRRNPSWCDRILSYGKG--MRLLNYR----R---NEIKMSDHRP 591 (643)
Q Consensus 525 vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~--~~~--~kkR~PAWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHRP 591 (643)
-|++.-||.-+ +.--+.|... .+. -++| .|.||+++.. ++...|. + .+..+|||--
T Consensus 217 ~~~~l~~g~tc-------d~~~N~y~~aqk~~ddp~~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~A 285 (422)
T KOG3873|consen 217 EDKELVEGNTC-------DSPLNCYTSAQKREDDPLGKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEA 285 (422)
T ss_pred hhhhhhcCCcc-------cCcchhhhHHHhCCCCcccee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhh
Confidence 24444455411 1111223210 000 1467 8999999753 3333332 2 2478999999
Q ss_pred ceeEEEEEE
Q 006495 592 VTATYMAEV 600 (643)
Q Consensus 592 V~A~F~v~V 600 (643)
+.|++.+.-
T Consensus 286 l~a~L~I~~ 294 (422)
T KOG3873|consen 286 LMATLKIFK 294 (422)
T ss_pred heeEEEeec
Confidence 999997743
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=93.64 E-value=0.17 Score=53.50 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEEEeecCCCCCCCccHHHHhhhHHH-HHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006495 430 LFCFVCAHLTSGEKDGDELKRNADVHE-IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 489 (643)
Q Consensus 430 s~cFVn~HLaAgek~~d~~rRN~D~~e-Il~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNY 489 (643)
.|.+|++|+.+.. ..++...+.. ++.... . . ..+-||++||||-
T Consensus 143 ~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa 187 (276)
T smart00476 143 EFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNA 187 (276)
T ss_pred cEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCC
Confidence 6999999999853 2234433222 222110 0 0 1234999999997
No 22
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.46 E-value=0.054 Score=56.18 Aligned_cols=33 Identities=24% Similarity=0.097 Sum_probs=20.3
Q ss_pred ccceeecCCCeE--EEeeccccCCCCCCCCceeEE
Q 006495 564 CDRILSYGKGMR--LLNYRRNEIKMSDHRPVTATY 596 (643)
Q Consensus 564 CDRIL~~g~~i~--~l~Y~s~e~~~SDHRPV~A~F 596 (643)
.|+||....-.. ...+...+...|||-||.+.|
T Consensus 215 IDyilvs~~~~~~~~~~~i~~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 215 IDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249 (250)
T ss_pred EEEEEEChHHhhhEEEEEECCCCCCCCcccEEEEe
Confidence 788887643211 111222356789999998876
No 23
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=90.84 E-value=0.047 Score=57.40 Aligned_cols=33 Identities=36% Similarity=0.769 Sum_probs=24.3
Q ss_pred EEeeeeCCCC-CCCCCCCcccccCCCCCCCEEEEeeeee
Q 006495 100 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 100 ~vGTwNV~G~-~p~~~~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
.+-||||||. +.-.. +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~--~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK--LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH--HHHHHHHhCC-CE--EEEEec
Confidence 4679999993 32222 8999976555 86 899999
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=89.89 E-value=0.76 Score=48.80 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=42.8
Q ss_pred EEEEEEECCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006495 420 VSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 492 (643)
Q Consensus 420 VsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~ 492 (643)
..+...|.+..+||.++||.+-.. ...+|.+++.+.+++.+=- -..+| .-.||+.||+|.|=.
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~--h~P~r~~qF~~~~~k~~Ea---Ie~lP-----nA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRG--HAPERMNQFKMVLKKMQEA---IESLP-----NATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCC--CChHHHHHHHHHHHHHHHH---HHhCC-----CceEEEcCcccchhh
Confidence 345667788899999999999764 3467888888766653210 00112 235999999998643
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=85.66 E-value=1.3 Score=50.21 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=59.7
Q ss_pred eeeeeecccccccccee--EeEEeecccccccceeEEEEEEEECCe---EEEEEeecCCCCCCCccHHHHhhhHHHHHHh
Q 006495 386 LTIWVRRSLRRHIQNVR--VSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSGEKDGDELKRNADVHEIHRR 460 (643)
Q Consensus 386 L~VfvR~~l~~~I~~v~--vs~VgtGi~G~lGNKGaVsVs~~i~~T---s~cFVn~HLaAgek~~d~~rRN~D~~eIl~r 460 (643)
++|+-+..+-..+.+-. ..-.+.|++..-.=++.|+..|++-+. .++..|+||--+...++ .|.+++.-||..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHH
Confidence 34444555444443332 334566666543336777788876655 89999999999887766 478888888875
Q ss_pred cC-CCCCCCCCCCcccCCcceEEEeCccCc
Q 006495 461 TH-FRSHSEIGFPKSICDHERIIWLGDLNY 489 (643)
Q Consensus 461 ~~-F~~~~~~~~P~~I~dhD~VfW~GDLNY 489 (643)
+. |..... .|=.||++||||-
T Consensus 282 ~~~~~~~~~--------~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSSK--------SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhcc--------cCCCeEEecCCCC
Confidence 42 211000 3446999999994
No 26
>PRK11756 exonuclease III; Provisional
Probab=79.21 E-value=0.52 Score=48.44 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006495 100 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 100 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
.|.||||+|..-. -..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~-~~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRAR-PHQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHH-HHHHHHHHHhc-CCCE--EEEEec
Confidence 4679999994211 11367888554 4688 669998
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.55 E-value=1.3 Score=44.36 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=30.1
Q ss_pred eEEEEEeecCCCCCCCcc--HHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006495 429 TLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 491 (643)
Q Consensus 429 Ts~cFVn~HLaAgek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI 491 (643)
..|.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~--------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K--------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H--------HHhcCCcEEEEeecccCC
Confidence 368899999998763322 2345545554443210 0 000123599999999644
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=70.38 E-value=1.5 Score=44.61 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=28.6
Q ss_pred EEEEEeecCCCCCCCc--cHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006495 430 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 492 (643)
Q Consensus 430 s~cFVn~HLaAgek~~--d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNYRI~ 492 (643)
.|.++|+|++++.... ....|.+-+..+.+.+. ..... ...+|++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~~--------~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVDK--------DKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHhc--------CCcEEEEeecccCCC
Confidence 4789999999864322 12334444444433211 00001 134999999996443
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=66.10 E-value=5.1 Score=42.65 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=35.8
Q ss_pred ceeEEEEEEEECCeEEEEEeecCCCCCCCccHHHHhhhHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006495 416 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 489 (643)
Q Consensus 416 NKGaVsVs~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~VfW~GDLNY 489 (643)
....+++++ .+ +.|.+.||.+...+ .|.+.+..|..- |.+ ..| +.-++++||||=
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 455666665 22 78999999998422 377888888764 320 111 234899999993
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=65.47 E-value=13 Score=39.60 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=24.1
Q ss_pred EEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeee
Q 006495 99 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIV 138 (643)
Q Consensus 99 i~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyVlGfQEiV 138 (643)
..|||||+.|-.-.++ .++..-|..++++|| |-|||+=
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEag 66 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAG 66 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecC
Confidence 4589999999644432 123333334567887 6789983
No 31
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=62.14 E-value=2.2 Score=40.75 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=19.8
Q ss_pred eeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeee
Q 006495 102 GTWNVGGKLPPDD-----LDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 102 GTwNV~G~~p~~~-----~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
+||||.+..+..+ ..|..||.... ||| |+|||+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~-~Di--i~LQEv 38 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELD-PDI--IALQEV 38 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT--SE--EEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcC-CCE--EEEecc
Confidence 5999999211110 01677775433 785 779999
No 32
>PRK05421 hypothetical protein; Provisional
Probab=58.83 E-value=5.5 Score=41.36 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006495 99 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 137 (643)
Q Consensus 99 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 137 (643)
+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 44 lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred eeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 56779999986433211222333 444565 789999
No 33
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=28.58 E-value=41 Score=30.18 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=28.2
Q ss_pred eeeeeeecCCCcccccCCCCchhhHHHHHHHHhcc
Q 006495 133 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 167 (643)
Q Consensus 133 GfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~ 167 (643)
+|+ |+--+..-+|.+++..-...|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 6666666778888888889999999999986
No 34
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.00 E-value=36 Score=22.94 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.1
Q ss_pred EEEEeeee
Q 006495 98 RICVGTWN 105 (643)
Q Consensus 98 ri~vGTwN 105 (643)
+|||||+|
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 69999987
No 35
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=35 Score=38.36 Aligned_cols=51 Identities=25% Similarity=0.508 Sum_probs=28.6
Q ss_pred cCCcceEEEeCccCccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccc
Q 006495 475 ICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYE 543 (643)
Q Consensus 475 I~dhD~VfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~ 543 (643)
+...+.||+=|||||| +|+-...|+.--++- .++.||.=.+|.=.=|-|-+
T Consensus 349 L~~S~LvIFKGDLNYR---------KL~GD~~W~~Tt~F~---------t~Lrgf~p~n~caLRTiKad 399 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYR---------KLTGDRKWDPTTPFS---------TALRGFAPSNICALRTIKAD 399 (434)
T ss_pred HhhCcEEEEeccccHH---------HHhccCCCCCCCcHH---------HHhCCCCCCccceeeeeeee
Confidence 3346889999999995 444444554322221 14556663344444455544
No 36
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=22.20 E-value=14 Score=25.00 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.0
Q ss_pred HHHHHhhccCCCCC
Q 006495 23 VMRKWLNISTKDSD 36 (643)
Q Consensus 23 v~~Kwlni~~~~~d 36 (643)
|..|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 45699999776544
Done!