BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006496
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/604 (36%), Positives = 362/604 (59%), Gaps = 10/604 (1%)
Query: 40 EDDNRKENNSEEHNNKLTAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSM 99
D +RK + E + + SF R+L LN EW +G A++ G +QP ++ +
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 100 ISVYFLKDHDEI-KEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSK 158
+ V+ E ++ + +SL F L I S +T Q + F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 159 ILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218
+L +V WFD +N++GA+ +RLA DA V+ G R+A++ Q +++ +SLI W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDE---SSKLAAEAVSNLRTINAFSS 275
+L L+++A+ P++ + V +K +S + +K + E S K+A EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIAIA---GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 276 QERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGK 335
+++ + M ++ + P R ++++ + GI +F++A++ A AF +G LV + + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFE 968
Query: 336 SLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKII 395
++ +F +V + + D AK + + + + ++++ +ID G +P +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLE 1028
Query: 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG 455
G+++ V F YP RP++ + +G S+ ++ ++ ALVG SG GKST++ L+ERFYDP+ G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 456 VVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDK-IDESEIIEAGKAA 514
V +DG++I + +VSQEP LF +I ENI YG + + + EI+ A K A
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148
Query: 515 NAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK 574
N H FI L + Y+T GD+G QLSGGQKQRIAIARA+++ P +LLLDEATSALD++SEK
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 575 VVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSL 634
VVQEAL++ RT +V+AHRLSTIQN D+I V++ G+V E G+HQ LLA+ G Y+S+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSM 1266
Query: 635 VSLQ 638
VS+Q
Sbjct: 1267 VSVQ 1270
Score = 359 bits (922), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 206/581 (35%), Positives = 323/581 (55%), Gaps = 24/581 (4%)
Query: 77 LGCLSAVLFGAVQPVYAFAMGSMISVYF-----------LKDHDE------IKEKTRFYS 119
+G L+A++ G P+ G M + + + D+ ++E+ Y+
Sbjct: 52 VGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111
Query: 120 LCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICS 179
+ G+ L+ Q ++ +IR+ I+ E+GWFD + G + +
Sbjct: 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD--VGELNT 169
Query: 180 RLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 239
RL D + + +GD++ + Q ++ F + W+L LVI+A+ P++ +
Sbjct: 170 RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWA 229
Query: 240 VLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299
+L S + K + A ++ +A E ++ +RT+ AF Q++ + E +R G++++
Sbjct: 230 KILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289
Query: 300 IAGICLAFSRALVSCVVALAFWYGGRLV-GRGYIDGKSLFEIFLILVSTGKVIADAGTMT 358
A I + + L+ ALAFWYG LV + Y G+ L F +L+ V A
Sbjct: 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV-GQASPNI 348
Query: 359 TDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKG 418
A A VF ++D ID +G++P+ I G++E +++HF+YP+R V I KG
Sbjct: 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKG 408
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
++ +++ ++ ALVG SG GKST + L++R YDPL G+V IDG+DI I +
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 479 VSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538
VSQEP LFA TI ENI YG D + EI +A K ANA+DFI L +DT G+RG QL
Sbjct: 469 VSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Query: 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLST 598
SGGQKQRIAIARA+++NP +LLLDEATSALD++SE VVQ AL++ RT++V+AHRLST
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587
Query: 599 IQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639
++N D+IA + G +VE+G+H L+ + G Y+ LV QT
Sbjct: 588 VRNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQT 626
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/604 (36%), Positives = 361/604 (59%), Gaps = 10/604 (1%)
Query: 40 EDDNRKENNSEEHNNKLTAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSM 99
D +RK + E + + SF R+L LN EW +G A++ G +QP ++ +
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 100 ISVYFLKDHDEI-KEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSK 158
+ V+ E ++ + +SL F L I S +T Q + F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 159 ILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218
+L +V WFD +N++GA+ +RLA DA V+ G R+A++ Q +++ +SLI W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDE---SSKLAAEAVSNLRTINAFSS 275
+L L+++A+ P++ + V +K +S + +K + E S K+A EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIAIA---GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 276 QERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGK 335
+++ + M ++ + P R ++++ + GI +F++A++ A F +G LV + + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFE 968
Query: 336 SLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKII 395
++ +F +V + + D AK + + + + ++++ +ID G +P +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLE 1028
Query: 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG 455
G+++ V F YP RP++ + +G S+ ++ ++ ALVG SG GKST++ L+ERFYDP+ G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 456 VVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDK-IDESEIIEAGKAA 514
V +DG++I + +VSQEP LF +I ENI YG + + + EI+ A K A
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148
Query: 515 NAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK 574
N H FI L + Y+T GD+G QLSGGQKQRIAIARA+++ P +LLLDEATSALD++SEK
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 575 VVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSL 634
VVQEAL++ RT +V+AHRLSTIQN D+I V++ G+V E G+HQ LLA+ G Y+S+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSM 1266
Query: 635 VSLQ 638
VS+Q
Sbjct: 1267 VSVQ 1270
Score = 359 bits (921), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 206/581 (35%), Positives = 323/581 (55%), Gaps = 24/581 (4%)
Query: 77 LGCLSAVLFGAVQPVYAFAMGSMISVYF-----------LKDHDE------IKEKTRFYS 119
+G L+A++ G P+ G M + + + D+ ++E+ Y+
Sbjct: 52 VGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111
Query: 120 LCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICS 179
+ G+ L+ Q ++ +IR+ I+ E+GWFD + G + +
Sbjct: 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD--VGELNT 169
Query: 180 RLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 239
RL D + + +GD++ + Q ++ F + W+L LVI+A+ P++ +
Sbjct: 170 RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWA 229
Query: 240 VLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299
+L S + K + A ++ +A E ++ +RT+ AF Q++ + E +R G++++
Sbjct: 230 KILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289
Query: 300 IAGICLAFSRALVSCVVALAFWYGGRLV-GRGYIDGKSLFEIFLILVSTGKVIADAGTMT 358
A I + + L+ ALAFWYG LV + Y G+ L F +L+ V A
Sbjct: 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV-GQASPNI 348
Query: 359 TDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKG 418
A A VF ++D ID +G++P+ I G++E +++HF+YP+R V I KG
Sbjct: 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKG 408
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
++ +++ ++ ALVG SG GKST + L++R YDPL G+V IDG+DI I +
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 479 VSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538
VSQEP LFA TI ENI YG D + EI +A K ANA+DFI L +DT G+RG QL
Sbjct: 469 VSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Query: 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLST 598
SGGQKQRIAIARA+++NP +LLLDEATSALD++SE VVQ AL++ RT++V+AHRLST
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587
Query: 599 IQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639
++N D+IA + G +VE+G+H L+ + G Y+ LV QT
Sbjct: 588 VRNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQT 626
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 211/605 (34%), Positives = 346/605 (57%), Gaps = 22/605 (3%)
Query: 45 KENNSEEHNNKLTAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYF 104
+ENN+++ N +L P +G +A + G + P Y+ S ++V F
Sbjct: 731 EENNAQKTN-------LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNV-F 782
Query: 105 LKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEV 164
+ + + F++L F L+ + + ++ E LT+ +R + +L+ +
Sbjct: 783 AGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHI 842
Query: 165 GWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVI 224
G+FD +N+SG I +RLA D +R+ + R + ++ T S+ ++ W++AL+I
Sbjct: 843 GFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLI 902
Query: 225 IAVQPLVIVCLYGKEVLLKSMSKKVIKAQDE---SSKLAAEAVSNLRTINAFSSQERIQK 281
IA+ P+V +G+ + + + K +K+ E S K+A EA+ N+RT+ A + ++ +
Sbjct: 903 IAILPIVA---FGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYE 959
Query: 282 MLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLV---GRGYIDGKSLF 338
+ + P +E +++++I G+ + +++ + A+ G L+ + L
Sbjct: 960 NFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLR 1019
Query: 339 EIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHI 398
++ I +ST + A + + AK + A +F +L + +KID L G + +K+ G +
Sbjct: 1020 VMYAITIST-STLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKV 1077
Query: 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 458
++V FAYP RP + I KG S ++E ++ ALVG SG GKST++ L+ERFYD L G +
Sbjct: 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137
Query: 459 IDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGAS-DKIDESEIIEAGKAANAH 517
IDG +I IA+VSQEP LF +I ENI YG + +++ EA + AN H
Sbjct: 1138 IDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH 1197
Query: 518 DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQ 577
+FIA L EG++T GDRG QLSGGQKQRIAIARA+++NP +LLLDEATSALD++SEKVVQ
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 578 EALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSL 637
EAL+R RT +V+AHRL+T+ N D IAV+ G ++E+G+H L+++ GAYY L
Sbjct: 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE--KGAYYKLTQK 1315
Query: 638 QTTPQ 642
Q T +
Sbjct: 1316 QMTEK 1320
Score = 348 bits (893), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 221/616 (35%), Positives = 327/616 (53%), Gaps = 41/616 (6%)
Query: 50 EEHNNKLTAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHD 109
EE NK++ P R E +G L AV+ GA P+ + G +S F+ +
Sbjct: 54 EEVVNKVSIPQLYRYT--TTLEKLLLFIGTLVAVITGAGLPLMSILQGK-VSQAFINEQI 110
Query: 110 EIKE-------------KTRF----------YSLCFFGLSIFSLLTNVCQQYYFAYMGEY 146
I KT F Y+ G+ +T C + Y+ E
Sbjct: 111 VINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTC----YLYVAEQ 166
Query: 147 LTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSI 206
+ R+R + IL E+ WFD N SG + ++L + V+ GD++ + Q S
Sbjct: 167 MNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQF 224
Query: 207 TIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQ---DESSKLAAEA 263
F ++ SW+L LV++AV P+ +C + + KSMS I+ ++ K+ E
Sbjct: 225 ITGFIVAFTHSWQLTLVMLAVTPIQALCGFA---IAKSMSTFAIRETLRYAKAGKVVEET 281
Query: 264 VSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYG 323
+S++RT+ + + + A E ++ GV + GI +A ALAF+ G
Sbjct: 282 ISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIG 341
Query: 324 GRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDP 383
V G ++ + F ++ + AG + A + ++ VLDR ID
Sbjct: 342 VGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDS 401
Query: 384 DDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTII 443
G + KI G I +E+VHF YP+RP+V I +G ++ + A ++ ALVG SG GKSTII
Sbjct: 402 SSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII 461
Query: 444 GLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKID 503
L+ R+YD LKG + IDG D+ +A+VSQEPALF TI ENI+ G + I
Sbjct: 462 SLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGIT 520
Query: 504 ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDE 563
E++ A K ANA FI L GY+T GDRG QLSGGQKQRIAIARA+++NP +LLLDE
Sbjct: 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE 580
Query: 564 ATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLL 623
ATSALD++SE +VQ+AL++ RT++++AHRLSTI+N D+I + G+VVE G H++L+
Sbjct: 581 ATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640
Query: 624 AKGPAGAYYSLVSLQT 639
A+ G YY LV+ QT
Sbjct: 641 AQ--QGLYYDLVTAQT 654
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 208/595 (34%), Positives = 331/595 (55%), Gaps = 29/595 (4%)
Query: 59 PSFRRLLALNIPEWKQ--ASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTR 116
P R+LL L PE ++ A++G L+ + + F +G +I V + + +
Sbjct: 5 PEARKLLGLAYPERRRLAAAVGFLT--MSSVISMSAPFFLGKIIDVIY--TNPTVDYSDN 60
Query: 117 FYSLCFFGLSIFSLL---TNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENS 173
LC GLS L N + Y G+ + R+R ++ S IL EV +FD+
Sbjct: 61 LTRLCL-GLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR-- 117
Query: 174 SGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLV-- 231
+G + +RL+ D ++ V + ++ ++ + ++ +M +S LA +++V P V
Sbjct: 118 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 177
Query: 232 IVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQ----ERIQKMLKKAH 287
I +YG+ L+ ++K + ++++LA E + N+RT+ AF + E+ +
Sbjct: 178 IAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 235
Query: 288 EAPRREGVRQSWIAGICLAFSRALVSCVVALAFWY-GGRLVGRGYIDGKSLFEIFLILVS 346
+ R+E ++ G + L ++ L+ Y GG L+G ++ L +
Sbjct: 236 QLARKEAFARAGFFG-----ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFW 290
Query: 347 TGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFA 406
G I + +++ KG A ++ +L+R K+ ++ + G +E ++VHFA
Sbjct: 291 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFA 350
Query: 407 YPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXX 466
YPARP V IF+ FS++I + TALVG SGSGKST++ L+ R YDP G + +DG DI
Sbjct: 351 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 467 XXXXXXXXXIALVSQEPALFAGTIRENITYGASDK--IDESEIIEAGKAANAHDFIAGLY 524
I VSQEP LF+ +I ENI YGA D + EI + ANA FI
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 470
Query: 525 EGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM 584
+G++T G++G+ LSGGQKQRIAIARA+LKNP +LLLDEATSALD+++E +VQEAL+RLM
Sbjct: 471 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530
Query: 585 VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639
RT +V+AHRLSTI+N +++AVL+QG++ E G H+ LL+K P G Y L++ Q+
Sbjct: 531 DGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK-PNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 325 bits (833), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 207/595 (34%), Positives = 330/595 (55%), Gaps = 29/595 (4%)
Query: 59 PSFRRLLALNIPEWKQ--ASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTR 116
P R+LL L PE ++ A++G L+ + + F +G +I V + + +
Sbjct: 36 PEARKLLGLAYPERRRLAAAVGFLT--MSSVISMSAPFFLGKIIDVIY--TNPTVDYSDN 91
Query: 117 FYSLCFFGLSIFSLL---TNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENS 173
LC GLS L N + Y G+ + R+R ++ S IL EV +FD+
Sbjct: 92 LTRLCL-GLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR-- 148
Query: 174 SGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLV-- 231
+G + +RL+ D ++ V + ++ ++ + ++ +M +S LA +++V P V
Sbjct: 149 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 208
Query: 232 IVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQ----ERIQKMLKKAH 287
I +YG+ L+ ++K + ++++LA E + N+RT+ AF + E+ +
Sbjct: 209 IAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 266
Query: 288 EAPRREGVRQSWIAGICLAFSRALVSCVVALAFWY-GGRLVGRGYIDGKSLFEIFLILVS 346
+ R+E ++ G + L ++ L+ Y GG L+G ++ L +
Sbjct: 267 QLARKEAFARAGFFG-----ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFW 321
Query: 347 TGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFA 406
G I + +++ KG A ++ +L+R K+ ++ + G +E ++VHFA
Sbjct: 322 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFA 381
Query: 407 YPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXX 466
YPARP V IF+ FS++I + TALVG SGSGKST++ L+ R YDP G + +DG DI
Sbjct: 382 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 441
Query: 467 XXXXXXXXXIALVSQEPALFAGTIRENITYGASDK--IDESEIIEAGKAANAHDFIAGLY 524
I VSQEP LF+ +I ENI YGA D + EI + ANA FI
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 525 EGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM 584
+G++T G++G+ LSGGQKQRIAIARA+LKNP +LLLDEATSALD+++E +VQEAL+RLM
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 585 VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639
RT +V+AH LSTI+N +++AVL+QG++ E G H+ LL+K P G Y L++ Q+
Sbjct: 562 DGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSK-PNGIYRKLMNKQS 615
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 163/519 (31%), Positives = 267/519 (51%), Gaps = 8/519 (1%)
Query: 120 LCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICS 179
L GL I +T+ Y +++ + +R + ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 180 RLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 239
R+ D+ V S + +V+ +SI F M SW+L+++++ + P+V + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 240 VLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299
+S+SK + + + A + + + + F QE K K R +G++
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTT 359
+ I + + S +A + + ++ +F +++ + + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 360 DIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGF 419
+G A ++FA+LD + D ++ G +E +V F YP R V +
Sbjct: 307 QFQRGMAACQTLFAILDSEQEKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNI 362
Query: 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALV 479
++ I A K+ ALVG+SGSGKSTI LI RFYD +G + +DG D+ +ALV
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 480 SQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539
SQ LF T+ NI Y +++ +I EA + A A DFI + G DT G+ G+ LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTI 599
GGQ+QRIAIARA+L++ +L+LDEATSALD++SE+ +Q AL+ L RTS+V+AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 600 QNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638
+ D I V+E G +VE G+H LLA+ G Y L +Q
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLAQ--HGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 265/519 (51%), Gaps = 8/519 (1%)
Query: 120 LCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICS 179
L GL I +T+ Y +++ + +R + ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 180 RLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 239
R+ D+ V S + +V+ +SI F M SW+L++++I + P+V + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 240 VLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299
+++SK + + + A + + + + F QE K K R +G++
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTT 359
+ I + + S +A + + ++ +F +++ + + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 360 DIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGF 419
+G A ++F +LD + D E+ G +E +V F YP R +V +
Sbjct: 307 QFQRGMAACQTLFTILDSEQEKDE---GKRVIERATGDVEFRNVTFTYPGR-DVPALRNI 362
Query: 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALV 479
++ I A K+ ALVG+SGSGKSTI LI RFYD +G + +DG D+ +ALV
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 480 SQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539
SQ LF T+ NI Y +++ +I EA + A A DFI + G DT G+ G+ LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTI 599
GGQ+QRIAIARA+L++ +L+LDEATSALD++SE+ +Q AL+ L RTS+V+AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 600 QNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638
+ D I V+E G +VE G+H LL G Y L +Q
Sbjct: 543 EKADEIVVVEDGVIVERGTHNDLLEH--RGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 159/524 (30%), Positives = 268/524 (51%), Gaps = 10/524 (1%)
Query: 116 RFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSG 175
R GL L+ Y +++ + ++R + + + V +FDQ+ S+G
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STG 122
Query: 176 AICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCL 235
+ SR+ D+ V + +V+ +SI T+ SW+L+LV+I V P+V +
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 236 YGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGV 295
+ +S+ + A + A + + + + ++ QE +K K + R++ +
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 296 RQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAG 355
+ I + + S + + R + + +F + + +
Sbjct: 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT 302
Query: 356 TMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNG-YQPEKIIGHIELEDVHFAYPARPNVM 414
++T++ +G A ++F ++D T+ D NG Y+ E++ G ++++DV F Y +
Sbjct: 303 SVTSEFQRGMAACQTLFGLMDLETERD----NGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ S +I K+ ALVG+SGSGKSTI L RFYD G + +DG D+
Sbjct: 359 L-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
ALVSQ LF TI NI Y A + +I +A + A+A +FI + +G DT G+
Sbjct: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAH 594
G LSGGQ+QR+AIARA+L++ VL+LDEATSALD++SE+ +Q AL+ L +T +V+AH
Sbjct: 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537
Query: 595 RLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638
RLSTI+ D I V+++G ++E G H LLA+ GAY L +Q
Sbjct: 538 RLSTIEQADEILVVDEGEIIERGRHADLLAQD--GAYAQLHRIQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 175/552 (31%), Positives = 278/552 (50%), Gaps = 21/552 (3%)
Query: 94 FAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRE 153
+A+ +I+ + L +++ T + F I +QY + + IR+
Sbjct: 39 YAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRK 98
Query: 154 NMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMS 213
+ + + ++ N G + SR+ D + + + + +I IA ++
Sbjct: 99 KLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIM 156
Query: 214 LIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAF 273
+ +L L + + P I+ +Y L+ ++++ +A E E V + + +F
Sbjct: 157 FFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSF 216
Query: 274 SSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYID 333
+ ++ K K + ++ + A + + G L G I
Sbjct: 217 AIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT 276
Query: 334 GKSL--FEIFLILV--STGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGY 389
+L F +L L+ +++A T+T A ++ VF ++D D D NG
Sbjct: 277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA----SMDRVFQLIDE----DYDIKNGV 328
Query: 390 --QPEKII-GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLI 446
QP +I G I+++ V F Y I K +++IE ++ A VG SG GKST+I LI
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Query: 447 ERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESE 506
RFYD G + IDG +I I LV Q+ LF+ T++ENI G DE E
Sbjct: 388 PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE-E 446
Query: 507 IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATS 566
++EA K ANAHDFI L +GYDT G+RG++LSGGQKQR++IAR L NP +L+LDEATS
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 567 ALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKG 626
ALD +SE ++QEAL+ L +RT+++VAHRLSTI + D I V+E G +VE G+H+ L+AK
Sbjct: 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK- 565
Query: 627 PAGAYYSLVSLQ 638
GAY L S+Q
Sbjct: 566 -QGAYEHLYSIQ 576
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 164/562 (29%), Positives = 283/562 (50%), Gaps = 29/562 (5%)
Query: 84 LFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYM 143
+ G + P + +G I V F+ ++ + Y L + + L Q +
Sbjct: 51 ILGVLSP---YLIGKTIDVVFVPRRFDLLPR---YMLILGTIYALTSLLFWLQGKIMLTL 104
Query: 144 GEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTF 203
+ + R+R+ + K+ VG+FD+ G I SR+ D + + +++G+ + +Q F
Sbjct: 105 SQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSI---IQFF 159
Query: 204 SSITI---AFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVI----KAQDES 256
S I A M ++ L+LV +++ PL ++ ++ S ++K + +
Sbjct: 160 SGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQ----IVSSQTRKYFYENQRVLGQL 215
Query: 257 SKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVV 316
+ + E +S L I F+ +E+ + + +E+ R+ G + +G+ + +
Sbjct: 216 NGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGF 275
Query: 317 ALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376
AL +GG L + I ++ + + + I + +F +LD
Sbjct: 276 ALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335
Query: 377 RHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSG 436
+ DD + + ++ G IE ++V F+Y + V+ K + +I+ + ALVG +G
Sbjct: 336 LEE--EKDDPDAVELREVRGEIEFKNVWFSYDKKKPVL--KDITFHIKPGQKVALVGPTG 391
Query: 437 SGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITY 496
SGK+TI+ L+ RFYD +G + +DG DI I +V Q+ LF+ T++EN+ Y
Sbjct: 392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451
Query: 497 GASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556
G DE EI EA K ++ FI L EGY+T D G LS GQ+Q +AI RA L NP
Sbjct: 452 GNPGATDE-EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510
Query: 557 AVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616
+L+LDEATS +D+++EK +Q A+ +LM +TS+++AHRL+TI+N D+I VL G +VE
Sbjct: 511 KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570
Query: 617 GSHQSLLAKGPAGAYYSLVSLQ 638
G H L+ K G YY L + Q
Sbjct: 571 GKHDELIQK--RGFYYELFTSQ 590
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 249/485 (51%), Gaps = 5/485 (1%)
Query: 139 YFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVAL 198
+ +Y + +R ++ K+L+F + ++ SS + +RL D +++LV + +
Sbjct: 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRI 143
Query: 199 LVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSK 258
+V+ M++ I+ +L+ V+I + P +++ + +K+ ++ DE ++
Sbjct: 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNR 203
Query: 259 LAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVAL 318
+ E + +R + AF +E + +KA+E+ RR + + L +V+ +
Sbjct: 204 VVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIA 263
Query: 319 AFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRH 378
W+GG LV ++ S+ L+ + G + I + S + V VL+
Sbjct: 264 VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK 323
Query: 379 TKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSG 438
I+ D N + G + E+V F Y + + G + +++ A++G++GSG
Sbjct: 324 PAIEEAD-NALALPNVEGSVSFENVEFRYFENTDP-VLSGVNFSVKPGSLVAVLGETGSG 381
Query: 439 KSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGA 498
KST++ LI R DP +G V++D D+ I+ V QE LF+GTI+EN+ +G
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 499 SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAV 558
D D+ EI+EA K A HDFI L EGYD+ G SGGQKQR++IARA++K P V
Sbjct: 442 EDATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500
Query: 559 LLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618
L+LD+ TS++D +EK + + L+R T+ ++ ++ T D I VL +G+V G+
Sbjct: 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560
Query: 619 HQSLL 623
H+ LL
Sbjct: 561 HKELL 565
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 168/270 (62%), Gaps = 8/270 (2%)
Query: 370 SVFAVLDRHTKIDPDDLNGYQPEKI-IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKS 428
++F +L T++ DL G P + G IE E+VHF+Y + + S + ++
Sbjct: 27 NMFDLLKEETEVK--DLPGAGPLRFQKGRIEFENVHFSYADGRETL--QDVSFTVMPGQT 82
Query: 429 TALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAG 488
ALVG SG+GKSTI+ L+ RFYD G ++IDG+DI I +V Q+ LF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 489 TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548
TI +NI YG ++ E+ A +AA HD I EGY T G+RGL+LSGG+KQR+AI
Sbjct: 143 TIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVL 608
AR +LK P ++LLDEATSALD+ +E+ +Q +L ++ RT++VVAHRLST+ N D I V+
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVI 261
Query: 609 EQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638
+ G +VE G H++LL++G G Y + LQ
Sbjct: 262 KDGCIVERGRHEALLSRG--GVYADMWQLQ 289
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 164/249 (65%), Gaps = 5/249 (2%)
Query: 392 EKIIG-HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450
EK G +IE DV+F+YP + N K + I + + ALVG +GSGKSTI L+ RFY
Sbjct: 11 EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 451 DPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEA 510
D +G +KI G+++ I +V Q+ LF TI+ NI YG D DE E+I+A
Sbjct: 71 DA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE-EVIKA 128
Query: 511 GKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
K+A +DFI L + +DT G++G++LSGG++QRIAIAR +LK+P +++ DEATS+LDS
Sbjct: 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188
Query: 571 QSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGA 630
++E + Q+A+E L RT +++AHRLSTI + + I +L +G++VE+G+H+ LL G
Sbjct: 189 KTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN--GE 246
Query: 631 YYSLVSLQT 639
Y + ++Q+
Sbjct: 247 YAEMWNMQS 255
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 148/251 (58%), Gaps = 12/251 (4%)
Query: 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450
P + G ++ +DV FAYP PNV + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 451 DPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEA 510
P G V +DG + +A V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 511 GKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
+ AHDFI+G +GYDT G+ G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 571 QSEKVVQEALERLMVE------RTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624
++ VQ RL+ E RT +++ H+LS + I L++G V E+G+H L+
Sbjct: 190 GNQLRVQ----RLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Query: 625 KGPAGAYYSLV 635
+G G Y S+V
Sbjct: 246 RG--GCYRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450
P + G ++ +DV FAYP RP+V++ +G + + + TALVG +GSGKST+ L++ Y
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
Query: 451 DPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEA 510
P G + +DG+ + +A V QEP +F +++ENI YG + K EI A
Sbjct: 68 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 127
Query: 511 GKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
+ AH FI+GL +GYDT + G QLSGGQ+Q +A+ARA+++ P VL+LD+ATSALD+
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 571 QS----EKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKG 626
S E+++ E+ ER R+ +++ LS ++ D I LE G + E G+HQ L+ K
Sbjct: 188 NSQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK- 244
Query: 627 PAGAYYSLV 635
G Y+++V
Sbjct: 245 -KGCYWAMV 252
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 403 VHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR 462
V FAY + I + S + A G SG GKSTI L+ERFY P G + IDG+
Sbjct: 7 VDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 463 DIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAG 522
I I VSQ+ A+ AGTIREN+TYG + ++ + A A F+
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 523 LYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALER 582
+ + +T G+RG+++SGGQ+QR+AIARA L+NP +L+LDEAT++LDS+SE +VQ+AL+
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 583 LMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640
LM RT++V+AHRLSTI + D I +E+G++ G H L+A P A Y VS Q T
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY--VSEQLT 240
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 118
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 237
Query: 637 LQT 639
LQ+
Sbjct: 238 LQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 637 LQT 639
LQ+
Sbjct: 244 LQS 246
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 120
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 239
Query: 637 LQT 639
LQ+
Sbjct: 240 LQS 242
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 146/251 (58%), Gaps = 12/251 (4%)
Query: 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450
P + G ++ +DV FAYP PNV + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 451 DPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEA 510
P G V +DG + +A V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 511 GKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
+ AHDFI+G +GYDT G+ G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 571 QSEKVVQEALERLMVE------RTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624
++ VQ RL+ E RT +++ +LS + I L++G V E+G+H L+
Sbjct: 190 GNQLRVQ----RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Query: 625 KGPAGAYYSLV 635
+G G Y S+V
Sbjct: 246 RG--GCYRSMV 254
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG++GSGKST+ LI+RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 120
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 239
Query: 637 LQT 639
LQ+
Sbjct: 240 LQS 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 154/243 (63%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ D+ATSALD +SE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 637 LQT 639
LQ+
Sbjct: 244 LQS 246
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 118
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++A RLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 237
Query: 637 LQT 639
LQ+
Sbjct: 238 LQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 5/243 (2%)
Query: 398 IELEDVHFAY-PARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I ++ F Y P P +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
V IDG D+ + +V Q+ L +I +NI+ A+ + ++I A K A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ ++ RT +++A RLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 637 LQT 639
LQ+
Sbjct: 244 LQS 246
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 12/251 (4%)
Query: 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450
P + G ++ +DV FAYP PNV + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 451 DPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEA 510
P G V +DG + +A V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 511 GKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
+ AHDFI+G +GYDT G+ G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 571 QSEKVVQEALERLMVE------RTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624
++ VQ RL+ E RT +++ +LS + I L++G V E+G+H L+
Sbjct: 190 GNQLRVQ----RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Query: 625 KGPAGAYYSLV 635
+G G Y S+V
Sbjct: 246 RG--GCYRSMV 254
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
I + + F + AR + G + +I A+VGQ G GKS+++ + D ++G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAH 517
I G +A V Q+ + ++RENI +G +++E +A
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALL 107
Query: 518 DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQ 577
+ L G T G++G+ LSGGQKQR+++ARAV N + L D+ SA+D+ K +
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 578 EAL---ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYY 632
E + + ++ +T ++V H +S + D+I V+ G++ E GS+Q LLA+ A A +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461
+V F++ + K ++NIE + A+ G +GSGK++++ LI + +G++K G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 462 RDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA 521
R ++ SQ + GTI+ENI +G S DE KA I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLQQDIT 144
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS-QSEKVVQEAL 580
E +T G+ G+ LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 581 ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627
+LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461
+V F++ + K ++NIE + A+ G +GSGK++++ LI + +G++K G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 462 RDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA 521
R ++ SQ + GTI+ENI +G S DE KA I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLQQDIT 144
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS-QSEKVVQEAL 580
E +T G+ G+ LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 581 ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627
+LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461
+V F++ + K ++NIE + A+ G +GSGK++++ LI + +G++K G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 462 RDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA 521
R ++ SQ + GTI+ENI G S DE KA I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVS--YDEYRYKSVVKACQLQQDIT 144
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS-QSEKVVQEAL 580
E +T G+ G+ LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 581 ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627
+LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461
+V F++ + K ++NIE + A+ G +GSGK++++ LI + +G++K G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 462 RDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA 521
R ++ SQ + GTI+ENI G S DE KA I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVS--YDEYRYKSVVKACQLQQDIT 144
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS-QSEKVVQEAL 580
E +T G+ G+ LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 581 ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627
+LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461
+V F++ + K ++NIE + A+ G +GSGK++++ LI + +G++K G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 462 RDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA 521
R ++ SQ + GTI+ENI + D+ ++ KA I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVV---KACQLQQDIT 143
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS-QSEKVVQEAL 580
E +T G+ G+ LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 581 ERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627
+LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 250
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI +G S DE KA + I+ E + G+
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 16/209 (7%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI +G S DE KA + I+ E + G+
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 594 HRLSTIQNCDIIAVLEQGRVVEEGSHQSL 622
++ ++ D I +L +G G+ L
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 13/213 (6%)
Query: 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXX 472
+ S+++ A + ++G SG+GKST+I + P +G V +DG+++
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 473 XXX---IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYD 528
I ++ Q L + T+ N+ ++D + E + + GL + +D
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 529 TWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL--MVE 586
++ + LSGGQKQR+AIARA+ NP VLL DEATSALD + + + E L+ + +
Sbjct: 136 SYPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 587 RTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618
T +++ H + ++ CD +AV+ G ++E+ +
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 13/213 (6%)
Query: 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXX 472
+ S+++ A + ++G SG+GKST+I + P +G V +DG+++
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 473 XXX---IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYD 528
I ++ Q L + T+ N+ ++D + E + + GL + +D
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 529 TWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL--MVE 586
++ + LSGGQKQR+AIARA+ NP VLL D+ATSALD + + + E L+ + +
Sbjct: 159 SYPSN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 587 RTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618
T +++ H + ++ CD +AV+ G ++E+ +
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI G S DE KA + I+ E + G+
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIAGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI + D+ +I KA + I+ E + G+
Sbjct: 101 -ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI + D+ +I KA + I+ E + G+
Sbjct: 101 -ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 107/219 (48%), Gaps = 14/219 (6%)
Query: 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXX 471
N ++ I+ + AL+G SGSGKST++ I Y P G + D +D+
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD 74
Query: 472 XXXXIALVSQEPALFAG-TIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDT 529
+ LV Q AL+ T+ +NI + K EI + + I L Y
Sbjct: 75 RN--VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-P 131
Query: 530 WCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER-- 587
W QLSGGQ+QR+AIARA++K P VLLLDE S LD+ V+ L+RL E
Sbjct: 132 W------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 588 TSVVVAH-RLSTIQNCDIIAVLEQGRVVEEGSHQSLLAK 625
T+V V H + + D IAV+ +G +++ G+ + K
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI + D+ +I KA + I+ E + G+
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 126
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LSGGQ+ RI++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 187 SKMEHLKKADKILILHEG 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXX 472
+ S+++ A + ++G SG+GKST+I + P +G V +DG+++
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 473 XXX---IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYD 528
I + Q L + T+ N+ ++D + E + + GL + +D
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 529 TWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL--MVE 586
++ + LSGGQKQR+AIARA+ NP VLL D+ATSALD + + + E L+ + +
Sbjct: 159 SYPSN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 587 RTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618
T +++ H ++ CD +AV+ G ++E+ +
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI +G S DE KA + I+ E + G+
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LS GQ+ +I++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
IE V YP +G S I + L+G SGSGK+TI+ LI P KG V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANA 516
I G+ + + LV Q ALF T+ +N+++G +K + ++A +
Sbjct: 73 WIGGKRVTDLPPQKRN--VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-RVREL 129
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
F+ +++ +LSGGQ+QR+A+ARA+ P VLL DE +A+D+Q + +
Sbjct: 130 LRFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 577 QEALERLMVER--TSVVVAH-RLSTIQNCDIIAVLEQGRVVEEGSHQSLLAK 625
+ + ++ E TSV V H + ++ D + VL +G V + G+ + + K
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 25/230 (10%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
S+ +E+ + ++G +G+GK+ + LI F+ P G + +DG+D+ IA
Sbjct: 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD--IAF 76
Query: 479 VSQEPALFAG-TIRENITYGASDKI--DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRG 535
V Q +LF +++N+ +G K D +++ + + DR
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL------------DRN 124
Query: 536 -LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAH 594
L LSGG++QR+A+ARA++ NP +LLLDE SALD ++++ +E L ++ ++ + V H
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLTVLH 183
Query: 595 RLSTIQN-----CDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639
++ Q D IAV+ G++++ G + + K G S V +
Sbjct: 184 -ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG 455
G + ++D+ Y N I + S +I + L+G++GSGKST++ R + +G
Sbjct: 18 GQMTVKDLTAKYTEGGNA-ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 456 VVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAAN 515
++IDG ++ Q+ +F+GT R+N+ A+ + EI +
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS--DQEIWKVADEVG 133
Query: 516 AHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKV 575
I D D G LS G KQ + +AR+VL +LLLDE ++ LD + ++
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 576 VQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRV 613
++ L++ + T ++ R+ + CD V+E+ +V
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 12/205 (5%)
Query: 418 GFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIA 477
G S ++ + AL+G SG GK+T + ++ Y P G + D D+ +
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVG 78
Query: 478 LVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536
+V Q AL+ T+ ENI + + + +E A + D +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI------DNLLDRKPT 132
Query: 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER--TSVVVAH 594
QLSGGQ+QR+A+ARA++K P VLL DE S LD+ +++ ++ L E TSV V H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 595 -RLSTIQNCDIIAVLEQGRVVEEGS 618
+ + IAV QG++V+ G+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 121/236 (51%), Gaps = 17/236 (7%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+++E++++ Y + + KG ++NI+ + TA++G +G GKST+ P G +
Sbjct: 8 LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 458 KIDGR--DIXXXXXXXXXXXIALVSQEP--ALFAGTIRENITYGASD-KIDESEIIEAGK 512
D + D I +V Q+P LF+ ++ +++++GA + K+ E EI +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 513 AANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
A I L + T C LS GQK+R+AIA ++ P VL+LDE T+ LD
Sbjct: 126 NALKRTGIEHLKD-KPTHC------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 573 EKVVQEALERLMVER--TSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625
+ + L + E T ++ H + + CD + V+++GRV+ +G+ + + A+
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 17/198 (8%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
+ K + IE + A+ G +G+GK++++ +I +P +G +K GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I+ SQ + GTI+ENI + D+ +I KA + I+ E + G+
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVA 593
G+ LS GQ+ +I++ARAV K+ + LLD LD +EK + + + +LM +T ++V
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 594 HRLSTIQNCDIIAVLEQG 611
++ ++ D I +L +G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 419 FSINIE---AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXX 475
F +N++ + L+G +G+GKS + LI P +G V+++G DI
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-- 71
Query: 476 IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534
I V Q+ ALF ++ NI YG + + A G +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--------GIAHLLDRK 123
Query: 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAH 594
+LSGG++QR+A+ARA++ P +LLLDE SA+D +++ V+ E L R + V + H
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILH 182
Query: 595 ----RLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624
+ D +AV+ GR+VE+G + L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 14/235 (5%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+++ DVH + ++ + KG +++I + ++G SGSGKST + + D +G +
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 458 KIDGRDIXXXXXX--XXXXXIALVSQEPALFAG-TIRENITYGASDKIDE--SEIIEAGK 512
IDG ++ + +V Q LF T+ NIT A K+ + E EA K
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEA-K 139
Query: 513 AANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
A D + GL + + LSGGQ QR+AIARA+ P ++L DE TSALD +
Sbjct: 140 AMELLDKV-GLKDKAHAYPD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194
Query: 573 EKVVQEALERLMVE-RTSVVVAHRLSTIQNC-DIIAVLEQGRVVEEGSHQSLLAK 625
V +++L E T VVV H + + D + ++ G ++EEG + L +
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 14/235 (5%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+++ DVH + ++ + KG +++I + ++G SGSGKST + + D +G +
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 458 KIDGRDIXXXXXX--XXXXXIALVSQEPALFAG-TIRENITYGASDKIDE--SEIIEAGK 512
IDG ++ + +V Q LF T+ NIT A K+ + E EA K
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEA-K 118
Query: 513 AANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
A D + GL + + LSGGQ QR+AIARA+ P ++L DE TSALD +
Sbjct: 119 AMELLDKV-GLKDKAHAYPD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 173
Query: 573 EKVVQEALERLMVE-RTSVVVAHRLSTIQNC-DIIAVLEQGRVVEEGSHQSLLAK 625
V +++L E T VVV H + + D + ++ G ++EEG + L +
Sbjct: 174 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 27/224 (12%)
Query: 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXX---XX 469
V+ +INIE + ++G SG+GK+T + +I P G + D R +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 470 XXXXXXIALVSQEPALFAG-TIRENITYGASD-KIDESEII----EAGKAANAHDFIAGL 523
I +V Q AL+ T ENI + ++ K+ + EI E K + H +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 524 YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ----SEKVVQEA 579
+LSGGQ+QR+A+ARA++K+P++LLLDE S LD++ + +V+E
Sbjct: 138 PR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 580 LERLMVERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSL 622
RL V T +VV+H + I D + VL +G++V+ G + L
Sbjct: 187 QSRLGV--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 14/205 (6%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
++ I+ + L+G SG GK+T + +I +P +G + RD+ I++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN--ISM 88
Query: 479 VSQEPALFAG-TIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536
V Q A++ T+ ENI + K + EI + + A I L Y
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAH 594
QLSGGQ+QR+A+ARA++ P VLL+DE S LD++ ++ +++L ++ T++ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 595 -RLSTIQNCDIIAVLEQGRVVEEGS 618
++ + D IAV+ +G++++ GS
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 14/205 (6%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
++ I+ + L+G SG GK+T + +I +P +G + RD+ I++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN--ISM 87
Query: 479 VSQEPALFAG-TIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536
V Q A++ T+ ENI + K + EI + + A I L Y
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAH 594
QLSGGQ+QR+A+ARA++ P VLL+DE S LD++ ++ +++L ++ T++ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 595 -RLSTIQNCDIIAVLEQGRVVEEGS 618
++ + D IAV+ +G++++ GS
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 10/235 (4%)
Query: 395 IGHIELEDV-HFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP 452
+G IE+ +V H + P + S+ I + + G +GSGKST++ ++ +P
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 453 LKGVVKIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGK 512
G V DG + IA E FA + + + + + + + + K
Sbjct: 62 TSGDVLYDG-ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 120
Query: 513 AANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
A +F+ GL +D++ LSGG+K+R+AIA ++ P +L+LDE LD +
Sbjct: 121 --KAMEFV-GL--DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 573 EKVVQEALERL-MVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625
+ + +E+ + +T ++++H + T+ N D + VLE+G+ V +G+ L K
Sbjct: 176 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 8/208 (3%)
Query: 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALV 479
S+ I + + G +GSGKST++ ++ +P G V DG + IA
Sbjct: 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG-ERKKGYEIRRNIGIAFQ 85
Query: 480 SQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539
E FA + + + + + + + + K A +F+ GL +D++ LS
Sbjct: 86 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK--KAMEFV-GL--DFDSFKDRVPFFLS 140
Query: 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL-MVERTSVVVAHRLST 598
GG+K+R+AIA ++ P +L+LDE LD + + + +E+ + +T ++++H + T
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200
Query: 599 IQN-CDIIAVLEQGRVVEEGSHQSLLAK 625
+ N D + VLE+G+ V +G+ L K
Sbjct: 201 VINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 27/224 (12%)
Query: 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXX---XX 469
V+ +INIE + ++G SG+GK+T + +I P G + D R +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 470 XXXXXXIALVSQEPALFAG-TIRENITYGASD-KIDESEII----EAGKAANAHDFIAGL 523
I +V Q AL+ T ENI + ++ K+ + EI E K + H +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 524 YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ----SEKVVQEA 579
+LSG Q+QR+A+ARA++K+P++LLLDE S LD++ + +V+E
Sbjct: 138 PR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 580 LERLMVERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSL 622
RL V T +VV+H + I D + VL +G++V+ G + L
Sbjct: 187 QSRLGV--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 26/235 (11%)
Query: 398 IELEDVHFAYPARPNVMI-FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I+L++V Y ++ K ++NI+ + +++G SGSGKST++ +I P +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 457 VKIDG---RDIXXXXXXX-XXXXIALVSQEPALFAG-TIRENITY-------GA-SDKID 503
V ID D+ I V Q+ L T EN+ GA S +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 504 ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDE 563
+E K A E + + + QLSGGQ+QR+AIARA+ NP ++L D+
Sbjct: 122 RKRALECLKMA----------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 564 ATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616
T ALDS++ + + + L++L E +T VVV H ++ + + I L+ G V E
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 398 IELEDVHFAYPARPNVMI-FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
I+L++V Y ++ K ++NI+ + ++ G SGSGKST + +I P +G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 457 VKIDG---RDIXXXXXXX-XXXXIALVSQE----PALFAGTIRENI------TYGASDKI 502
V ID D+ I V Q+ P L T EN+ Y +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSG 118
Query: 503 DE--SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLL 560
+E +E K A E + + + QLSGGQ+QR+AIARA+ NP ++L
Sbjct: 119 EERRKRALECLKXA----------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 561 LDEATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616
DE T ALDS++ + + + L++L E +T VVV H ++ + + I L+ G V E
Sbjct: 169 ADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 113/252 (44%), Gaps = 24/252 (9%)
Query: 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP---- 452
I +ED+ Y R + G S++I TA+VG+S SGKSTII + + P
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 453 LKGVVKIDGRDIXXXXXXXXXX----XIALVSQ------EPALFAGTIRENITYGASDKI 502
L G V G+D+ IALV Q P + ++ +
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 503 DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562
SE+IE A + + + + LQLSGG KQR+ IA A+L +P VL+LD
Sbjct: 125 SHSELIE-----KASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILD 179
Query: 563 EATSALD--SQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619
E TSALD +Q+ + + M++ T + V H ++ D +AV+ G +VE S
Sbjct: 180 EPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNST 239
Query: 620 QSLLAKGPAGAY 631
+ K P Y
Sbjct: 240 FQIF-KNPLHPY 250
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG---RDIXXXXXXX- 471
K ++NI+ + +++G SGSGKST++ +I P +G V ID D+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 472 XXXXIALVSQEPALFAG-TIRENITY-------GA-SDKIDESEIIEAGKAANAHDFIAG 522
I V Q+ L T EN+ GA S + +E K A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-------- 132
Query: 523 LYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALER 582
E + + + QLSGGQ+QR+AIARA+ NP ++L D+ T ALDS++ + + + L++
Sbjct: 133 --ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 583 LMVE--RTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616
L E +T VVV H ++ + + I L+ G V E
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 52/232 (22%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
I KG S IE + L+G +G+GK+T + +I P G+V + G++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN----------- 78
Query: 475 XIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHD-----FIAGLYE---- 525
V +EP +R+ I+Y EAG N F+AG Y
Sbjct: 79 ----VVEEPH----EVRKLISYLPE---------EAGAYRNMQGIEYLRFVAGFYASSSS 121
Query: 526 -------------GYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
G DR S G +++ IARA++ NP + +LDE TS LD +
Sbjct: 122 EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 573 EKVVQEALERLMVERTSVVV-AHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622
+ V++ L++ E +++V +H + ++ CD IA++ G +VE G+ + L
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 16/219 (7%)
Query: 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXX-- 469
N + S++++ + ++G SG GK+T++ + F P G + + G+ I
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 470 XXXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYE--G 526
+ + QE LF T+ NI YG + G+ A I + E G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--------KGRTAQERQRIEAMLELTG 127
Query: 527 YDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE 586
G +LSGGQ+QR A+ARA+ +P ++LLDE SALD Q + ++E + +
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 587 --RTSVVVAH-RLSTIQNCDIIAVLEQGRVVEEGSHQSL 622
+++V V+H R +Q D IAV++QGR+++ S L
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+E++ +H Y A + KG + + + L+G +G+GK+T + I KG +
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 458 KIDGRDIXXXXXXXXXXX-IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAAN 515
+G+DI IALV + +F T+ EN+ GA ++ D+ I
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGI------KR 117
Query: 516 AHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKV 575
++I L+ G LSGG++Q +AI RA+ P +L DE + L
Sbjct: 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 576 VQEALERLMVERTSVVVAHR--LSTIQNCDIIAVLEQGRVVEEGSHQSLL 623
V E ++++ E T++++ + L ++ VLE G++V EG LL
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 18/233 (7%)
Query: 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456
IEL V F Y + K + E K +VG++GSGK+T++ ++ G
Sbjct: 11 RIELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 457 VKIDGRDIXXXXXXXXXXXIALVSQEPA--LFAGTIRENITYGAS-DKIDESEIIEAGKA 513
+ +DG + V Q P+ + T+ E++ + +DESE+ + K
Sbjct: 67 IFLDG---SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 514 ANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSE 573
++GL L LSGGQKQR+AIA + ++ L LDE S LD S+
Sbjct: 124 VLELVGLSGL-------AAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 574 KVVQEALERLMVERTSVV-VAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAK 625
+ + + LE L E ++ V H L + + D I + G + GS + + +
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXX----XXXXXX 475
S+ ++ + L+G SG GK+T + +I +P +G + I + +
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 476 IALVSQEPALFAG-TIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGD 533
IA+V Q AL+ T+ +NI + K+ EI + + + GL E
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE---LLGLTE----LLNR 135
Query: 534 RGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER--TSVV 591
+ +LSGGQ+QR+A+ RA+++ P V L+DE S LD++ ++ L++L + T++
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195
Query: 592 VAH-RLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633
V H ++ + D IAV+ +G + + GS + K PA + +
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK-PANTFVA 237
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 418 GFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXX-I 476
G SI++ T ++G +GSGKST+I +I F +G V + +DI I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 477 ALVSQEP-ALFAGTIRENITYGASDKID--------------ESEIIEAGKAANAHDFIA 521
Q P L T+ EN+ G + + E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL-DSQSEKVVQEAL 580
L YD G +LSGGQ + + I RA++ NP ++++D+ + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 581 ERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617
E T +++ HRL + N D + V+ G+++ EG
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 418 GFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXX-I 476
G SI++ T ++G +GSGKST+I +I F +G V + +DI I
Sbjct: 25 GVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 477 ALVSQEP-ALFAGTIRENITYGASDKID--------------ESEIIEAGKAANAHDFIA 521
Q P L T+ EN+ G + + E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL-DSQSEKVVQEAL 580
L YD G +LSGGQ + + I RA++ NP ++++DE + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 581 ERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617
E T +++ HRL + N D + V+ G+++ EG
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 418 GFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXX-I 476
G SI++ T ++G +GSGKST+I +I F +G V + +DI I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 477 ALVSQEP-ALFAGTIRENITYG----ASDKID----------ESEIIEAGKAANAHDFIA 521
Q P L T+ EN+ G ++ E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 522 GLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL-DSQSEKVVQEAL 580
L YD G +LSGGQ + + I RA++ NP ++++DE + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 581 ERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617
E T +++ HRL + N D + V+ G+++ EG
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 24/234 (10%)
Query: 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXX-- 469
+V K S+ I+ + L+G SG GK+T + I +P +G + I+ +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 470 --XXXXXXIALVSQEPALFA-GTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYE 525
+A V Q AL+ T+ +NI + K+ + EI K GL E
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEI---DKRVREVAEXLGLTE 134
Query: 526 GYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV 585
+ +LSGGQ+QR+A+ RA+++ P V L DE S LD++ + L++L
Sbjct: 135 ----LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 586 ER--TSVVVAH-RLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636
+ T++ V H ++ D IAV +G + + G+ P YY V+
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT--------PDEVYYKPVN 236
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 15/224 (6%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
++L++V A+ V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANA 516
I + + + +V Q AL+ ++ EN+++G + E+I + N
Sbjct: 61 FIGEKRMNDTPPAERG--VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--NQRVNQ 116
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
+ L D + LSGGQ+QR+AI R ++ P+V LLDE S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 577 QEALERLM--VERTSVVVAH-RLSTIQNCDIIAVLEQGRVVEEG 617
+ + RL + RT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 15/224 (6%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
++L++V A+ V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANA 516
I + + + +V Q AL+ ++ EN+++G + E+I + N
Sbjct: 61 FIGEKRMNDTPPAERG--VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--NQRVNQ 116
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
+ L D + LSGGQ+QR+AI R ++ P+V LLDE S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 577 QEALERLM--VERTSVVVAH-RLSTIQNCDIIAVLEQGRVVEEG 617
+ + RL + RT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+ +E++ F Y A +F+ + ++ A++GQ+G GKST++ L+ + P++G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQE-PALFAGTIRENITYGASDKIDESEIIEAGKAANA 516
++ I V Q + FA ++ + + G S I+ +
Sbjct: 63 EV-------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN------TFAKPKS 103
Query: 517 HDFIAGL----YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572
HD+ + Y LSGGQ+Q I IARA+ ++LLDE TSALD +
Sbjct: 104 HDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163
Query: 573 EKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAV 607
+ +V L L + VV +T Q ++A+
Sbjct: 164 QDIVLSLLIDLAQSQNMTVV---FTTHQPNQVVAI 195
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 532 GDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE-RTSV 590
G + LSGGQ+QR++IARA+ P VLL DE TSALD + V +++L E +T V
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 591 VVAHRLSTIQNC-DIIAVLEQGRVVEEG 617
VV H + ++ + L QG++ EEG
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 15/224 (6%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
++L++V A+ V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANA 516
I + + + +V Q AL+ ++ EN+++G + E+I + N
Sbjct: 61 FIGEKRMNDTPPAERG--VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--NQRVNQ 116
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
+ L D + LSGGQ+QR+AI R ++ P+V LLD+ S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172
Query: 577 QEALERLM--VERTSVVVAH-RLSTIQNCDIIAVLEQGRVVEEG 617
+ + RL + RT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDI----XXXXXX 470
I KG S++++ + +++G SGSGKST++ ++ P +G V ++G+++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 471 XXXXXIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDT 529
+ V Q L T EN+ +++ GK G Y +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIV---------PMLKMGKPKKEAKE-RGEYLLSEL 128
Query: 530 WCGDR----GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV 585
GD+ +LSGG++QR+AIARA+ P +L DE T LDS + K V + ++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 586 ERTSVV-VAHRLSTIQNCDIIAVLEQGRVVEE 616
TS+V V H + ++ G+VV E
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 19/234 (8%)
Query: 400 LEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459
LE H Y + +I S++I + + A++G +G+GKST++ L+ + P G +
Sbjct: 12 LEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 460 DGRDIXXXXXXXXXXXIALVSQEPAL-FAGTIRENITYGASDKIDESEIIEAGKAANAHD 518
G+++ A++ Q L F ++ E I G + + + D
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTD 130
Query: 519 FIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK------NPAVLLLDEATSALDSQS 572
+A Y LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 131 CLALAQRDYRV--------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH 182
Query: 573 EKVVQEALERLMVERTSVV--VAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623
++ L +L + V V H L+ D I +L QG++V G+ + +L
Sbjct: 183 QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 29/239 (12%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLI--ERFYDPLKG 455
+ ++D+H + + I +G S+++ + A++G +GSGKST+ + Y+ G
Sbjct: 21 LSIKDLHVSVEDK---AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 456 VVKIDGRDIXXXXXXXXXXX-IALVSQEPALFAGT------------IRENITYGASDKI 502
V+ G+D+ I + Q P G +R D+
Sbjct: 78 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 137
Query: 503 DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562
D +++E + IA L D + SGG+K+R I + + P + +LD
Sbjct: 138 DFQDLME--------EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 189
Query: 563 EATSALDSQSEKVVQEALERLM-VERTSVVVAH--RLSTIQNCDIIAVLEQGRVVEEGS 618
E+ S LD + KVV + + L +R+ ++V H R+ D + VL QGR+V+ G
Sbjct: 190 ESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 13/231 (5%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLI--ERFYDPLKG 455
+ ++D+H + + I +G S+++ + A++G +GSGKST+ + Y+ G
Sbjct: 2 LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 456 VVKIDGRDIXXXXXXXXXXX-IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAA 514
V+ G+D+ I + Q P G + A + + E
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 118
Query: 515 NAHDF----IAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570
+ D IA L D + SGG+K+R I + + P + +LDE+ S LD
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 571 QSEKVVQEALERLMV-ERTSVVVAH--RLSTIQNCDIIAVLEQGRVVEEGS 618
+ KVV + + L +R+ ++V H R+ D + VL QGR+V+ G
Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 39/207 (18%)
Query: 430 ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQE-PALFAG 488
+VG +G GK+T + ++ +P +G V+ D +A Q A + G
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQYIKAEYEG 432
Query: 489 TIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544
T+ E ++ S K++ ++E+++ G+ + YD D LSGG+ Q
Sbjct: 433 TVYELLSKIDSSKLNSNFYKTELLKP----------LGIIDLYDRNVED----LSGGELQ 478
Query: 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNC 602
R+AIA +L++ + LLDE ++ LD + V A+ LM E+T++VV H + I
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538
Query: 603 DIIAVLEQGRVVEEGSHQSLLAKGPAG 629
++ +G E G H L P G
Sbjct: 539 SDRLIVFEG---EPGRHGRALP--PMG 560
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 533 DRGL-QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSV- 590
DR L QLSGG+ QR+AIA A+L+ DE +S LD + V + RL E +V
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 591 VVAHRLSTIQN-CDIIAVL 608
VV H L+ + D+I V+
Sbjct: 283 VVEHDLAVLDYLSDVIHVV 301
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 430 ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQEP----AL 485
+VG +G GK+T + ++ +P +G V+ D V+ +P A
Sbjct: 372 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTVAYKPQYIKAE 415
Query: 486 FAGTIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541
+ GT+ E ++ S K++ ++E+++ G+ + YD D LSGG
Sbjct: 416 YEGTVYELLSKIDSSKLNSNFYKTELLKP----------LGIIDLYDRNVED----LSGG 461
Query: 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI 599
+ QR+AIA +L++ + LLDE ++ LD + V A+ LM E+T++VV H + I
Sbjct: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
Query: 600 QNCDIIAVLEQGRVVEEGSHQSLLAKGPAG 629
++ +G E G H L P G
Sbjct: 522 DYVSDRLIVFEG---EPGRHGRALP--PMG 546
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 533 DRGL-QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSV- 590
DR L QLSGG+ QR+AIA A+L+ DE +S LD + V + RL E +V
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 591 VVAHRLSTIQN-CDIIAVL 608
VV H L+ + D+I V+
Sbjct: 269 VVEHDLAVLDYLSDVIHVV 287
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGG K ++A+ARAVL+N +LLLDE T+ LD+ + + L + TS+ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 606
Query: 598 TIQN-CDIIAVLEQGRVVE-EGSHQSLLAKGPAGAYYSLVS 636
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 647
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ E +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAE 959
Query: 598 TIQN-CDIIAVLEQGRVVEEGSH 619
+N + + ++ GR+ G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 457
+E+ D+ Y +P + + ++ IE G +G GK+T++ I + PLKG +
Sbjct: 11 LEIRDLSVGYD-KP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 458 KIDGRDIXXXXXXXXXXXIALVSQEPALFAGTIRENIT-YGASDKIDESEIIEAGKAANA 516
+G I ++ ++ + YG K++++EI++A ++
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEV 124
Query: 517 HDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
D L E LS G +R+ +A +L N + +LD+ A+D S+ V
Sbjct: 125 LDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 577 QEALERLMVERTSVVVAHRLSTIQNCDI 604
+++ ++ E+ V+++ R + CD+
Sbjct: 173 LKSILEILKEKGIVIISSR-EELSYCDV 199
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGG K ++A+ARAVL+N +LLLDE T+ LD+ + + L + TS+ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 606
Query: 598 TIQN-CDIIAVLEQGRVVE-EGSHQSLLAKGPAGAYYSLVS 636
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 647
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ E +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAE 959
Query: 598 TIQN-CDIIAVLEQGRVVEEG 617
+N + + ++ GR G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGG K ++A+ARAVL+N +LLLDE T+ LD+ + + L + TS+ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 600
Query: 598 TIQN-CDIIAVLEQGRVVE-EGSHQSLLAKGPAGAYYSLVS 636
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 601 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 641
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ E +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAE 953
Query: 598 TIQN-CDIIAVLEQGRVVEEG 617
+N + + ++ GR G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 24/216 (11%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
S + A + LVG +G+GKST++ + KG ++ G+ + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 479 VSQE--PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536
+SQ+ P FA + +T DK +E++ + +AG D G
Sbjct: 78 LSQQQTPP-FATPVWHYLTLHQHDKT-RTELL---------NDVAGAL-ALDDKLGRSTN 125
Query: 537 QLSGGQKQRIAIARAVLK-----NPA--VLLLDEATSALDSQSEKVVQEALERLMVERTS 589
QLSGG+ QR+ +A VL+ NPA +LLLD+ ++LD + + + L L + +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 590 VVV-AHRLS-TIQNCDIIAVLEQGRVVEEGSHQSLL 623
+V+ +H L+ T+++ +L+ G+++ G + +L
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 22/215 (10%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
S + A + LVG +G+GKST++ + KG ++ G+ + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 479 VSQE-PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537
+SQ+ FA + +T DK +E++ + +AG D G Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELL---------NDVAGAL-ALDDKLGRSTNQ 126
Query: 538 LSGGQKQRIAIARAVLK-----NPA--VLLLDEATSALDSQSEKVVQEALERLMVERTSV 590
LSGG+ QR+ +A VL+ NPA +LLLD+ +LD + + + L L + ++
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAI 186
Query: 591 VV-AHRLS-TIQNCDIIAVLEQGRVVEEGSHQSLL 623
V+ +H L+ T+++ +L+ G+++ G + +L
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSV-VVAHR 595
LSGG+ QR+AIA A+L+N DE +S LD + A+ RL E SV VV H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 596 LSTIQN-CDIIAVL 608
L+ + DII V+
Sbjct: 218 LAVLDYLSDIIHVV 231
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 39/197 (19%)
Query: 423 IEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIALVSQE 482
I+ + +VG +G GK+T + + +P +G ++ D +A Q
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD-------------LTVAYKPQY 355
Query: 483 -PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIA------GLYEGYDTWCGDRG 535
A + GT+ E ++ KID S++ N++ + G+ + YD
Sbjct: 356 IKADYEGTVYELLS-----KIDASKL-------NSNFYKTELLKPLGIIDLYDREVN--- 400
Query: 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVA 593
+LSGG+ QR+AIA +L++ + LLDE ++ LD + V A+ L E+T++VV
Sbjct: 401 -ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 594 HRLSTIQNC-DIIAVLE 609
H + I D + V E
Sbjct: 460 HDVLXIDYVSDRLXVFE 476
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 37/200 (18%)
Query: 405 FAYPARPNVMIFKGFSINIEAKKST-----ALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459
F+YP+ F +N+E + + ++G++G+GK+T+I L L G +K
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKL-------LAGALKP 404
Query: 460 D-GRDIXXXXXXXXXXXIALVSQEPALFAGTIRENITYGASDKIDESEI-IEAGKAANAH 517
D G+DI IA F GT+R+ + + + K
Sbjct: 405 DEGQDIPKLNVSMKPQKIA------PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458
Query: 518 DFIAGLYEGYDTWCGDRGLQ-LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV 576
D I D+ +Q LSGG+ QR+AI A+ + L+DE ++ LDS+ +
Sbjct: 459 DII------------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 577 QEALERLMV--ERTSVVVAH 594
+ + R ++ ++T+ +V H
Sbjct: 507 SKVIRRFILHNKKTAFIVEH 526
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVV-VAHR 595
+LSGG+ QR AI + ++ V + DE +S LD + + + L+ V+ V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 596 LSTI 599
LS +
Sbjct: 281 LSVL 284
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
S + A + LVG +G+GKST++ KG ++ G+ + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 479 VSQE-PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537
+SQ+ FA + +T DK +E++ + +AG D G Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELL---------NDVAGAL-ALDDKLGRSTNQ 126
Query: 538 LSGGQKQRIAIARAVLK-----NPA--VLLLDEATSALDSQSEKVVQEALERLMVERTSV 590
LSGG+ QR+ +A VL+ NPA +LLLDE ++LD + + + L L + ++
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAI 186
Query: 591 VV-AHRLS-TIQNCDIIAVLEQGRVVEEGSHQSLL 623
V +H L+ T+++ +L+ G+ + G + +L
Sbjct: 187 VXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXXXIAL 478
S + A + LVG +G+GKST++ KG ++ G+ + A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 479 VSQE-PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537
+SQ+ FA + +T DK +E++ + +AG D G Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELL---------NDVAGAL-ALDDKLGRSTNQ 126
Query: 538 LSGGQKQRIAIARAVLK-----NPA--VLLLDEATSALDSQSEKVVQEALERLMVERTSV 590
LSGG+ QR+ +A VL+ NPA +LLLDE ++LD + + + L L + ++
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAI 186
Query: 591 VV-AHRLS-TIQNCDIIAVLEQGRVVEEGSHQSLL 623
V +H L+ T+++ +L+ G+ + G + +L
Sbjct: 187 VXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 430 ALVGQSGSGKSTIIGL-----IERFYDPLKGVVKID------GRDIXXXXXXXXXXXIAL 478
++G++G GK+T++ + I F DP V K + G++I + +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 479 VSQ------EPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCG 532
V + GT+ E +T KIDE GK D + L + W
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILT-----KIDER-----GKK----DEVKELLNMTNLWNK 134
Query: 533 DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVV 592
D + LSGG QR+ +A ++L+ V + D+ +S LD + + +A+ L+ + +VV
Sbjct: 135 DANI-LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 593 AHRLSTIQN-CDIIAVL 608
H L + D+I ++
Sbjct: 194 DHDLIVLDYLTDLIHII 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSV--VVAHR 595
LSGG+ Q++ IA + K + +LD+ +S LD + +V +A++R+ ER +V ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 596 LS 597
LS
Sbjct: 446 LS 447
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 532 GDRGLQLSGGQKQRIAIARAVLKNPA---VLLLDEATSALDSQSEKVVQEALERLMVER- 587
G LSGG+ QRI +A + K + +LDE T L + + + E L RL V+R
Sbjct: 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL-VDRG 858
Query: 588 -TSVVVAHRLSTIQNCDIIAVL------EQGRVVEEGSHQSLLAKGP 627
T +V+ H L I+N D I L E G +V G+ + +AK P
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE-IAKNP 904
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 538 LSGGQKQRIAIARAVLK--NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAH 594
LSGG+ QRI +A + + +LDE T L + + + + L++L + T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 595 RLSTIQNCDII------AVLEQGRVVEEGSHQSLLAKGP----AGAYYS 633
I+N D I GRVV +G+ LL K P G Y S
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL-KNPDSSLTGEYLS 572
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIXXXXXXXXXX 474
I K S I L G +G+GK+T++ ++ + G V + G+
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK------------ 83
Query: 475 XIALVSQEPALFAGTIRENITYGAS---DKIDESEIIEAGKAANAHDFIAGLYEGYDTWC 531
+ A T+R++I + + +K E E + + A I G+Y+ D
Sbjct: 84 ----XPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-GVYQDIDDEI 138
Query: 532 GDRGLQ-----------------LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEK 574
+ Q LS G+KQR+ IARA+ P VL+LDE + LD + +
Sbjct: 139 RNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Query: 575 VVQEALERLMVERTS---VVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623
+ L+ L + + V H + I N I +L+ G+ +++G+ + +L
Sbjct: 199 SLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 25/229 (10%)
Query: 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLI--ERFYDPLKGVVKIDGRDIXXXXXXXX 472
I KG ++ + + AL+G +G+GKST+ ++ + Y +G + +DG +I
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 473 XXX-IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTW 530
+ L Q P G TI + K+ G+ +F + + +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKL--------GREVGVAEFWTKVKKALELL 129
Query: 531 CGDRGL-------QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL 583
D SGG+K+R I + ++ P +LDE S LD + KVV + +
Sbjct: 130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189
Query: 584 MVER-TSVVVAH--RLSTIQNCDIIAVLEQGRVVEEGSHQ---SLLAKG 626
++V+ H R+ D + V+ GRVV G + L AKG
Sbjct: 190 RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 516 AHDFIA---GLYEGYDTW---------CGDRGLQLSGGQKQRIAIA---RAVLKNPAVLL 560
AHDF A ++ DT G +LSGG+ QRI +A R + V +
Sbjct: 697 AHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV 756
Query: 561 LDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDII------AVLEQGRV 613
LDE T+ L + +Q L +L+ T + V H++ + D + A + GR+
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRL 816
Query: 614 VEEGS 618
V +G+
Sbjct: 817 VAQGT 821
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 538 LSGGQKQRIAIARAVLKNPAVLL--LDEATSALDSQSEKVVQEALERLM-VERTSVVVAH 594
LSGG+ QRI +A + +L LDE + L + + + E L RL + T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 595 RLSTIQNCDII------AVLEQGRVVEEGSHQSLLAKGPA--GAYYS 633
TI++ D I A GR+V G + LL + GAY S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLS 628
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 514 ANAHDFIAGLYE---GYDTWCGDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSA 567
A H ++ L + GY G LSGG+ QR+ +A + K V +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 568 LDSQSEKVVQEALERLMVE-RTSVVVAHRLSTIQNCDII 605
L + + + L+ + T +V+ H L I+ D I
Sbjct: 897 LHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 532 GDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLMVERT 588
G LSGG+ QR+ +A + + + +LDE T+ L + + L RL+
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 589 SV-VVAHRLSTIQNCDII 605
+V V+ H L I+ D I
Sbjct: 900 TVLVIEHNLDVIKTADYI 917
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 532 GDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLMVERT 588
G LSGG+ QR+ +A + + + +LDE T+ L + + L RL+
Sbjct: 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597
Query: 589 SV-VVAHRLSTIQNCDII 605
+V V+ H L I+ D I
Sbjct: 598 TVLVIEHNLDVIKTADYI 615
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 532 GDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLMVERT 588
G LSGG+ QR+ +A + + + +LDE T+ L + + L RL+
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 589 SV-VVAHRLSTIQNCDII 605
+V V+ H L I+ D I
Sbjct: 900 TVLVIEHNLDVIKTADYI 917
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 423 IEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI-DGRDI 464
IE K S +VG++ SGK+T + I F P VV I D R+I
Sbjct: 257 IEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREI 299
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 538 LSGGQKQRIAIAR--AVLKNPAV--LLLDEATSALDSQSEKVVQEALERLMVERTSVVVA 593
LSGG++ AIA ++LK V +LDE +ALD + + L++ + +V+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 594 HRLSTIQNCDII 605
HR T++ D++
Sbjct: 389 HRKGTMEEADVL 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,551,797
Number of Sequences: 62578
Number of extensions: 629072
Number of successful extensions: 1682
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 149
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)