Query 006496
Match_columns 643
No_of_seqs 268 out of 2974
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-120 4E-125 976.9 68.4 575 59-641 133-707 (716)
2 KOG0055 Multidrug/pheromone ex 100.0 1E-116 2E-121 997.1 72.0 580 57-640 648-1227(1228)
3 COG2274 SunT ABC-type bacterio 100.0 7E-105 2E-109 891.4 72.9 569 60-639 141-709 (709)
4 KOG0055 Multidrug/pheromone ex 100.0 8E-105 2E-109 900.7 56.1 576 61-641 15-591 (1228)
5 PRK11174 cysteine/glutathione 100.0 7.3E-99 2E-103 853.5 76.6 569 61-641 10-587 (588)
6 COG1132 MdlB ABC-type multidru 100.0 1.5E-97 3E-102 838.3 75.8 562 62-640 5-566 (567)
7 PTZ00265 multidrug resistance 100.0 7.9E-98 2E-102 901.8 77.4 573 60-639 812-1466(1466)
8 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-96 2E-101 848.0 75.9 567 57-635 145-711 (711)
9 KOG0054 Multidrug resistance-a 100.0 3.6E-98 8E-103 866.5 62.4 532 96-639 835-1376(1381)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-95 4E-100 838.2 77.9 562 61-638 123-685 (686)
11 COG4988 CydD ABC-type transpor 100.0 4.3E-95 9E-100 767.4 69.9 552 78-640 5-557 (559)
12 TIGR01193 bacteriocin_ABC ABC- 100.0 4.4E-95 9E-100 837.9 76.0 567 59-637 142-708 (708)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.7E-95 8E-100 839.4 74.8 564 60-635 141-709 (710)
14 PRK11176 lipid transporter ATP 100.0 5.3E-94 1.2E-98 813.2 77.1 569 61-640 13-581 (582)
15 PRK11160 cysteine/glutathione 100.0 9.9E-94 2.1E-98 805.9 76.4 565 63-637 6-573 (574)
16 TIGR03375 type_I_sec_LssB type 100.0 1.6E-93 3.5E-98 823.2 76.0 560 60-629 134-693 (694)
17 PRK10790 putative multidrug tr 100.0 3.7E-93 8E-98 807.0 77.2 571 58-642 8-579 (592)
18 TIGR00957 MRP_assoc_pro multi 100.0 2.1E-93 4.6E-98 872.4 75.9 513 116-638 1005-1520(1522)
19 TIGR01846 type_I_sec_HlyB type 100.0 6.6E-92 1.4E-96 809.1 77.2 568 60-639 126-693 (694)
20 PLN03130 ABC transporter C fam 100.0 1.4E-92 3E-97 863.8 75.6 513 116-640 953-1476(1622)
21 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-91 2.4E-96 793.2 76.7 567 63-640 4-570 (571)
22 PLN03232 ABC transporter C fam 100.0 1.4E-91 2.9E-96 855.4 73.6 513 116-640 950-1473(1495)
23 PRK13657 cyclic beta-1,2-gluca 100.0 3.6E-90 7.8E-95 781.5 78.0 567 60-640 6-572 (588)
24 PTZ00243 ABC transporter; Prov 100.0 7.7E-91 1.7E-95 847.5 76.5 515 117-640 999-1548(1560)
25 TIGR02868 CydC thiol reductant 100.0 1.5E-90 3.3E-95 775.9 70.4 524 64-596 4-529 (529)
26 TIGR02204 MsbA_rel ABC transpo 100.0 1E-89 2.3E-94 777.6 77.2 570 62-639 7-576 (576)
27 COG4987 CydC ABC-type transpor 100.0 2.2E-90 4.7E-95 719.0 65.3 556 71-637 14-572 (573)
28 TIGR01192 chvA glucan exporter 100.0 3.2E-89 7E-94 770.3 78.4 567 61-641 7-573 (585)
29 KOG0056 Heavy metal exporter H 100.0 1.8E-93 3.8E-98 725.7 36.7 549 78-639 220-775 (790)
30 KOG0057 Mitochondrial Fe/S clu 100.0 2.3E-90 4.9E-95 719.1 59.5 557 74-641 30-589 (591)
31 PRK10789 putative multidrug tr 100.0 3.3E-89 7.1E-94 769.1 73.4 547 84-641 6-553 (569)
32 PTZ00265 multidrug resistance 100.0 5.7E-88 1.2E-92 816.0 76.3 570 60-640 46-730 (1466)
33 TIGR01271 CFTR_protein cystic 100.0 5.6E-88 1.2E-92 822.3 74.0 508 120-640 929-1454(1490)
34 TIGR02857 CydD thiol reductant 100.0 2.6E-87 5.6E-92 749.8 70.8 527 73-608 3-529 (529)
35 TIGR01842 type_I_sec_PrtD type 100.0 6.9E-85 1.5E-89 731.3 73.2 537 71-624 4-542 (544)
36 COG5265 ATM1 ABC-type transpor 100.0 4E-88 8.7E-93 680.5 40.4 492 138-637 4-497 (497)
37 KOG0054 Multidrug resistance-a 100.0 5.5E-83 1.2E-87 740.1 64.6 543 71-638 199-743 (1381)
38 PLN03232 ABC transporter C fam 100.0 1.3E-81 2.8E-86 767.8 72.9 541 71-639 299-841 (1495)
39 PLN03130 ABC transporter C fam 100.0 7E-81 1.5E-85 761.1 76.3 540 70-638 298-840 (1622)
40 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.2E-80 4.8E-85 695.0 67.5 534 60-616 4-551 (555)
41 COG4618 ArpD ABC-type protease 100.0 2.2E-79 4.8E-84 630.6 52.7 533 78-625 28-561 (580)
42 PRK10522 multidrug transporter 100.0 1.4E-74 3.1E-79 647.9 67.6 523 69-623 9-538 (547)
43 TIGR00957 MRP_assoc_pro multi 100.0 5.8E-74 1.3E-78 701.5 74.2 543 70-638 314-862 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 1.8E-70 3.8E-75 668.8 73.8 536 71-636 78-646 (1490)
45 TIGR00954 3a01203 Peroxysomal 100.0 1E-69 2.3E-74 616.8 64.7 530 61-610 79-653 (659)
46 PTZ00243 ABC transporter; Prov 100.0 4.4E-68 9.6E-73 647.9 72.3 547 68-637 239-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.8E-58 3.9E-63 469.4 27.4 238 396-639 1-238 (275)
48 PRK14257 phosphate ABC transpo 100.0 3.1E-54 6.7E-59 449.6 27.5 223 395-625 78-314 (329)
49 COG1126 GlnQ ABC-type polar am 100.0 3.9E-54 8.5E-59 401.0 22.7 224 398-635 3-236 (240)
50 cd03252 ABCC_Hemolysin The ABC 100.0 2.6E-51 5.6E-56 411.8 28.1 236 398-637 1-236 (237)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 3.9E-51 8.5E-56 414.8 29.1 241 394-638 16-256 (257)
52 COG1135 AbcC ABC-type metal io 100.0 7.1E-52 1.5E-56 405.3 22.2 229 398-637 2-244 (339)
53 COG1117 PstB ABC-type phosphat 100.0 6E-52 1.3E-56 384.3 18.8 219 397-625 7-238 (253)
54 COG1125 OpuBA ABC-type proline 100.0 2.5E-51 5.4E-56 389.5 19.6 221 398-633 2-233 (309)
55 cd03253 ABCC_ATM1_transporter 100.0 1.2E-49 2.7E-54 399.4 27.9 236 398-638 1-236 (236)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-49 2.6E-54 399.0 26.7 233 398-634 1-233 (234)
57 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-49 3.5E-54 394.5 26.5 220 396-618 1-220 (221)
58 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-49 6E-54 397.3 27.6 236 398-636 1-236 (238)
59 cd03254 ABCC_Glucan_exporter_l 100.0 2.9E-49 6.2E-54 394.9 26.7 226 396-624 1-226 (229)
60 COG4615 PvdE ABC-type sideroph 100.0 3E-46 6.6E-51 373.2 46.2 473 122-617 54-530 (546)
61 TIGR02314 ABC_MetN D-methionin 100.0 5.5E-49 1.2E-53 410.7 25.9 228 398-636 2-242 (343)
62 COG4178 ABC-type uncharacteriz 100.0 5.4E-45 1.2E-49 393.1 56.8 475 118-610 88-588 (604)
63 cd03245 ABCC_bacteriocin_expor 100.0 2.9E-48 6.3E-53 385.2 26.7 220 396-617 1-220 (220)
64 PRK13631 cbiO cobalt transport 100.0 4.2E-48 9.1E-53 402.4 26.8 221 397-624 21-265 (320)
65 COG1120 FepC ABC-type cobalami 100.0 2E-48 4.4E-53 382.2 21.9 214 397-624 2-228 (258)
66 COG1122 CbiO ABC-type cobalt t 100.0 3.8E-48 8.2E-53 380.8 22.6 215 397-624 3-228 (235)
67 COG3840 ThiQ ABC-type thiamine 100.0 5.7E-48 1.2E-52 348.5 20.8 210 398-625 2-220 (231)
68 COG3839 MalK ABC-type sugar tr 100.0 6.8E-48 1.5E-52 392.9 23.5 218 397-631 3-229 (338)
69 cd03261 ABC_Org_Solvent_Resist 100.0 7.8E-48 1.7E-52 385.9 23.4 213 398-624 1-226 (235)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-47 2.9E-52 382.1 24.3 219 394-613 8-226 (226)
71 COG1136 SalX ABC-type antimicr 100.0 1.4E-47 3.1E-52 369.0 23.7 207 398-615 2-222 (226)
72 cd03260 ABC_PstB_phosphate_tra 100.0 8.4E-48 1.8E-52 383.7 22.7 213 398-622 1-227 (227)
73 PRK14269 phosphate ABC transpo 100.0 3.6E-47 7.8E-52 383.6 25.6 219 397-625 2-231 (246)
74 PRK13650 cbiO cobalt transport 100.0 3.6E-47 7.7E-52 389.9 25.8 217 397-624 4-229 (279)
75 COG1127 Ttg2A ABC-type transpo 100.0 3E-47 6.5E-52 360.5 23.1 225 397-636 8-246 (263)
76 COG1116 TauB ABC-type nitrate/ 100.0 1.7E-47 3.6E-52 368.1 20.7 196 397-611 3-207 (248)
77 COG1124 DppF ABC-type dipeptid 100.0 4E-47 8.7E-52 361.7 22.2 226 397-635 3-241 (252)
78 PRK14250 phosphate ABC transpo 100.0 1.4E-46 3E-51 377.9 26.3 224 397-635 3-231 (241)
79 PRK11153 metN DL-methionine tr 100.0 8.6E-47 1.9E-51 397.0 25.6 228 398-636 2-242 (343)
80 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.3E-47 2E-51 368.4 23.6 219 397-636 4-236 (254)
81 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.7E-46 3.7E-51 368.8 25.3 203 396-619 5-207 (207)
82 TIGR01186 proV glycine betaine 100.0 4.6E-47 1E-51 398.2 22.5 208 413-632 6-226 (363)
83 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-46 2.7E-51 380.0 24.3 223 398-631 2-238 (247)
84 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-46 2.8E-51 396.1 25.3 220 397-632 3-231 (356)
85 PRK11432 fbpC ferric transport 100.0 1.2E-46 2.7E-51 395.1 24.7 218 397-631 6-232 (351)
86 PRK14273 phosphate ABC transpo 100.0 1.7E-46 3.8E-51 380.5 24.6 226 397-633 7-246 (254)
87 PRK14242 phosphate transporter 100.0 1.8E-46 4E-51 380.3 24.5 219 397-625 6-238 (253)
88 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.2E-45 2.6E-50 376.8 30.5 219 395-635 37-256 (282)
89 COG2884 FtsE Predicted ATPase 100.0 5.1E-47 1.1E-51 345.3 17.9 209 398-619 2-221 (223)
90 PRK10744 pstB phosphate transp 100.0 3.4E-46 7.5E-51 379.4 26.2 220 396-625 12-245 (260)
91 cd03263 ABC_subfamily_A The AB 100.0 1.8E-46 3.8E-51 372.4 23.4 212 398-622 1-219 (220)
92 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-46 4.2E-51 376.7 23.9 212 398-625 3-227 (239)
93 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.6E-46 3.6E-51 383.1 23.7 225 399-638 26-264 (269)
94 PRK13635 cbiO cobalt transport 100.0 2.6E-46 5.6E-51 383.3 25.1 215 398-624 6-229 (279)
95 cd03250 ABCC_MRP_domain1 Domai 100.0 2.8E-46 6.1E-51 366.4 24.1 200 398-612 1-204 (204)
96 PRK13647 cbiO cobalt transport 100.0 2.5E-46 5.4E-51 382.6 24.6 214 397-623 4-226 (274)
97 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-46 2.9E-51 372.2 21.8 204 398-613 2-216 (216)
98 PRK13637 cbiO cobalt transport 100.0 3.2E-46 6.9E-51 384.2 25.1 218 398-624 3-234 (287)
99 COG3842 PotA ABC-type spermidi 100.0 1.2E-46 2.6E-51 385.7 21.3 219 397-632 5-233 (352)
100 cd03256 ABC_PhnC_transporter A 100.0 3.3E-46 7.1E-51 375.9 24.0 214 398-624 1-234 (241)
101 TIGR03265 PhnT2 putative 2-ami 100.0 4.1E-46 9E-51 391.8 25.2 218 397-631 4-230 (353)
102 PRK13643 cbiO cobalt transport 100.0 2.7E-46 5.9E-51 384.8 23.3 216 398-624 2-233 (288)
103 TIGR02315 ABC_phnC phosphonate 100.0 3.7E-46 8.1E-51 375.9 23.7 213 398-623 2-234 (243)
104 PRK14235 phosphate transporter 100.0 5.6E-46 1.2E-50 379.0 25.1 220 396-625 18-252 (267)
105 PRK14267 phosphate ABC transpo 100.0 3.8E-46 8.3E-51 377.9 23.6 228 397-635 4-247 (253)
106 cd03219 ABC_Mj1267_LivG_branch 100.0 3.4E-46 7.5E-51 374.4 22.5 217 398-624 1-232 (236)
107 PRK13642 cbiO cobalt transport 100.0 9.2E-46 2E-50 379.2 25.6 217 397-624 4-229 (277)
108 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.2E-46 1.4E-50 373.7 23.8 217 398-625 1-226 (242)
109 PRK10851 sulfate/thiosulfate t 100.0 7.9E-46 1.7E-50 389.7 25.5 217 398-631 3-232 (353)
110 PRK11629 lolD lipoprotein tran 100.0 7.4E-46 1.6E-50 371.0 24.1 210 398-618 6-228 (233)
111 PRK13646 cbiO cobalt transport 100.0 7.3E-46 1.6E-50 381.5 24.6 220 398-624 3-235 (286)
112 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-45 2.7E-50 370.1 25.6 227 398-635 2-232 (236)
113 COG3638 ABC-type phosphate/pho 100.0 3.6E-46 7.9E-51 352.2 20.3 215 397-624 3-237 (258)
114 cd03258 ABC_MetN_methionine_tr 100.0 6.7E-46 1.5E-50 371.5 23.4 216 398-624 2-230 (233)
115 cd03259 ABC_Carb_Solutes_like 100.0 3.7E-46 8E-51 368.2 21.0 204 398-617 1-213 (213)
116 PRK14247 phosphate ABC transpo 100.0 8.8E-46 1.9E-50 374.6 24.2 228 397-635 3-244 (250)
117 PRK09452 potA putrescine/sperm 100.0 9.2E-46 2E-50 391.0 25.2 218 397-631 14-240 (375)
118 PRK13632 cbiO cobalt transport 100.0 9.5E-46 2.1E-50 378.2 24.4 216 397-624 7-231 (271)
119 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-45 3.2E-50 373.3 25.6 214 398-625 1-237 (252)
120 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-45 2.5E-50 367.1 24.0 217 398-624 1-221 (222)
121 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-45 2.6E-50 392.1 25.7 223 397-636 3-237 (402)
122 cd03264 ABC_drug_resistance_li 100.0 7E-46 1.5E-50 365.6 22.2 204 398-617 1-211 (211)
123 PRK13636 cbiO cobalt transport 100.0 1.2E-45 2.5E-50 379.4 24.7 215 397-624 5-231 (283)
124 PRK14251 phosphate ABC transpo 100.0 8.7E-46 1.9E-50 374.9 23.3 226 397-633 4-243 (251)
125 PRK14239 phosphate transporter 100.0 1.6E-45 3.4E-50 373.3 25.2 219 397-625 5-237 (252)
126 PRK14274 phosphate ABC transpo 100.0 1.5E-45 3.3E-50 374.6 24.8 225 397-632 12-250 (259)
127 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-45 2.4E-50 366.6 23.1 210 398-622 1-219 (220)
128 PRK09493 glnQ glutamine ABC tr 100.0 1.6E-45 3.4E-50 370.4 24.3 214 398-625 2-226 (240)
129 PRK13634 cbiO cobalt transport 100.0 1.2E-45 2.7E-50 380.3 24.1 217 398-624 3-235 (290)
130 PRK14236 phosphate transporter 100.0 2.3E-45 5E-50 375.5 25.8 220 396-625 24-257 (272)
131 cd03266 ABC_NatA_sodium_export 100.0 1.4E-45 3.1E-50 365.4 23.5 208 398-617 2-218 (218)
132 PRK15079 oligopeptide ABC tran 100.0 2E-45 4.4E-50 383.6 25.8 225 397-633 8-259 (331)
133 PRK14249 phosphate ABC transpo 100.0 2.8E-45 6.1E-50 371.0 26.1 228 397-634 4-245 (251)
134 PRK13640 cbiO cobalt transport 100.0 2.6E-45 5.5E-50 376.7 26.1 216 397-624 5-232 (282)
135 PRK14256 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 371.4 25.8 220 396-625 3-237 (252)
136 PRK14237 phosphate transporter 100.0 2.2E-45 4.8E-50 374.6 25.4 218 397-624 20-251 (267)
137 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-45 3.3E-50 388.0 24.8 219 396-631 4-234 (362)
138 PRK14248 phosphate ABC transpo 100.0 2.3E-45 4.9E-50 375.1 25.4 219 397-625 21-253 (268)
139 PRK14268 phosphate ABC transpo 100.0 2.2E-45 4.7E-50 373.1 25.1 219 397-625 12-243 (258)
140 PRK14245 phosphate ABC transpo 100.0 1.5E-45 3.2E-50 372.9 23.7 219 397-625 3-235 (250)
141 PRK14240 phosphate transporter 100.0 2.6E-45 5.6E-50 371.2 25.4 220 396-625 2-235 (250)
142 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-45 2.2E-50 362.7 21.5 200 399-614 1-205 (205)
143 PRK13633 cobalt transporter AT 100.0 2.1E-45 4.5E-50 377.3 24.6 217 397-624 4-233 (280)
144 PRK14244 phosphate ABC transpo 100.0 1.1E-45 2.3E-50 374.1 22.0 223 398-631 6-243 (251)
145 PRK10575 iron-hydroxamate tran 100.0 1.8E-45 3.8E-50 375.1 23.8 222 397-635 11-245 (265)
146 PRK11000 maltose/maltodextrin 100.0 1.7E-45 3.7E-50 390.2 24.6 213 397-625 3-224 (369)
147 PRK11264 putative amino-acid A 100.0 2.6E-45 5.7E-50 371.2 24.9 225 398-636 4-245 (250)
148 PRK13652 cbiO cobalt transport 100.0 3E-45 6.5E-50 375.4 25.4 214 398-624 4-227 (277)
149 PRK11831 putative ABC transpor 100.0 2.6E-45 5.7E-50 374.5 24.8 225 397-636 7-244 (269)
150 PRK10619 histidine/lysine/argi 100.0 3.3E-45 7.1E-50 371.7 25.3 217 396-625 4-242 (257)
151 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-45 3.4E-50 362.3 22.3 204 398-617 1-208 (208)
152 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.8E-46 1.9E-50 366.9 20.6 205 398-613 1-218 (218)
153 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-45 4.1E-50 365.3 23.0 206 398-614 2-220 (221)
154 PRK14262 phosphate ABC transpo 100.0 2.6E-45 5.5E-50 371.2 24.4 228 397-635 3-244 (250)
155 PRK14259 phosphate ABC transpo 100.0 4.8E-45 1E-49 372.3 26.1 219 397-625 13-254 (269)
156 PRK13648 cbiO cobalt transport 100.0 3.3E-45 7.1E-50 374.0 24.9 216 397-624 7-231 (269)
157 PRK10070 glycine betaine trans 100.0 2.9E-45 6.3E-50 388.9 25.3 211 414-636 42-266 (400)
158 PRK13651 cobalt transporter AT 100.0 2.6E-45 5.6E-50 379.2 24.2 216 398-624 3-254 (305)
159 PRK11231 fecE iron-dicitrate t 100.0 3E-45 6.5E-50 371.6 24.0 223 398-637 3-237 (255)
160 PRK14261 phosphate ABC transpo 100.0 4.5E-45 9.8E-50 370.0 25.1 230 397-637 6-249 (253)
161 PRK14238 phosphate transporter 100.0 4.9E-45 1.1E-49 372.7 25.1 219 397-625 24-256 (271)
162 PRK14270 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 369.3 24.8 219 397-625 4-236 (251)
163 PRK14271 phosphate ABC transpo 100.0 7.1E-45 1.5E-49 372.1 26.2 219 397-625 21-252 (276)
164 cd03301 ABC_MalK_N The N-termi 100.0 2.1E-45 4.6E-50 362.8 21.6 204 398-617 1-213 (213)
165 TIGR03411 urea_trans_UrtD urea 100.0 4.5E-45 9.7E-50 367.7 24.4 213 398-624 3-231 (242)
166 PRK11124 artP arginine transpo 100.0 4.6E-45 9.9E-50 367.5 24.4 213 398-624 3-230 (242)
167 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-45 1.1E-49 361.3 24.1 210 399-612 2-218 (218)
168 cd03247 ABCC_cytochrome_bd The 100.0 3E-45 6.6E-50 350.9 21.3 178 398-617 1-178 (178)
169 PRK15112 antimicrobial peptide 100.0 9E-45 1.9E-49 370.1 26.0 232 397-639 4-254 (267)
170 PRK11308 dppF dipeptide transp 100.0 7.1E-45 1.5E-49 379.3 25.6 227 397-634 5-253 (327)
171 PRK13644 cbiO cobalt transport 100.0 7E-45 1.5E-49 371.9 25.0 214 398-624 2-224 (274)
172 PRK14254 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 371.8 26.8 229 397-635 39-280 (285)
173 PRK14243 phosphate transporter 100.0 9.3E-45 2E-49 369.4 25.8 219 397-625 10-249 (264)
174 cd03218 ABC_YhbG The ABC trans 100.0 2.8E-45 6.2E-50 366.8 21.6 217 398-624 1-222 (232)
175 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.6E-45 7.7E-50 362.9 22.1 206 398-619 1-218 (220)
176 TIGR03410 urea_trans_UrtE urea 100.0 2.7E-45 5.9E-50 366.4 21.4 213 398-623 1-220 (230)
177 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-45 5.8E-50 361.5 21.0 202 399-612 1-211 (211)
178 TIGR02769 nickel_nikE nickel i 100.0 8.5E-45 1.8E-49 370.1 25.3 227 398-635 3-250 (265)
179 PRK14260 phosphate ABC transpo 100.0 6.5E-45 1.4E-49 369.8 24.2 220 396-625 6-244 (259)
180 PRK14253 phosphate ABC transpo 100.0 9.5E-45 2.1E-49 366.8 24.9 219 397-625 3-234 (249)
181 PRK14266 phosphate ABC transpo 100.0 1.1E-44 2.3E-49 366.7 25.3 225 397-632 3-241 (250)
182 TIGR03415 ABC_choXWV_ATP choli 100.0 7E-45 1.5E-49 383.3 24.7 211 413-635 37-264 (382)
183 TIGR02673 FtsE cell division A 100.0 3.7E-45 8.1E-50 361.4 21.2 202 398-612 2-214 (214)
184 cd03292 ABC_FtsE_transporter F 100.0 4.7E-45 1E-49 360.7 22.0 203 398-613 1-214 (214)
185 PRK13649 cbiO cobalt transport 100.0 6.7E-45 1.5E-49 374.0 23.8 217 398-624 3-234 (280)
186 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.2E-45 1.8E-49 358.0 23.2 202 398-617 1-211 (211)
187 PRK13537 nodulation ABC transp 100.0 7.6E-45 1.7E-49 376.5 24.0 213 397-624 7-227 (306)
188 PRK10247 putative ABC transpor 100.0 5.8E-45 1.3E-49 362.3 22.0 211 397-620 7-223 (225)
189 PRK11607 potG putrescine trans 100.0 7E-45 1.5E-49 385.0 23.9 218 397-631 19-245 (377)
190 PRK11247 ssuB aliphatic sulfon 100.0 1.1E-44 2.4E-49 366.0 24.3 204 397-620 12-219 (257)
191 PRK13645 cbiO cobalt transport 100.0 1E-44 2.2E-49 374.0 24.5 219 396-624 5-240 (289)
192 PRK14252 phosphate ABC transpo 100.0 1.4E-44 3.1E-49 368.6 25.2 221 395-625 14-250 (265)
193 PRK11614 livF leucine/isoleuci 100.0 1.2E-44 2.7E-49 363.3 24.3 218 397-624 5-226 (237)
194 PRK13638 cbiO cobalt transport 100.0 1.3E-44 2.7E-49 370.1 24.7 213 398-624 2-225 (271)
195 PRK10584 putative ABC transpor 100.0 1.3E-44 2.9E-49 360.9 24.3 209 397-616 6-227 (228)
196 PRK14241 phosphate transporter 100.0 1.1E-44 2.4E-49 368.1 23.9 219 397-625 4-243 (258)
197 PRK11022 dppD dipeptide transp 100.0 1.4E-44 3E-49 377.3 25.2 228 398-634 4-252 (326)
198 PRK13548 hmuV hemin importer A 100.0 2.3E-44 5E-49 365.3 26.2 213 398-624 3-230 (258)
199 cd03300 ABC_PotA_N PotA is an 100.0 6.5E-45 1.4E-49 363.8 21.8 212 398-625 1-221 (232)
200 PRK14272 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 366.9 23.6 225 398-633 5-244 (252)
201 TIGR00968 3a0106s01 sulfate AB 100.0 1.8E-44 3.9E-49 361.7 24.6 211 398-624 1-220 (237)
202 PRK10771 thiQ thiamine transpo 100.0 2.6E-44 5.6E-49 359.6 25.7 209 398-624 2-219 (232)
203 PRK10253 iron-enterobactin tra 100.0 1.3E-44 2.8E-49 368.8 23.8 214 397-624 7-233 (265)
204 PRK13641 cbiO cobalt transport 100.0 1.8E-44 3.8E-49 371.5 24.9 217 397-624 2-234 (287)
205 cd03235 ABC_Metallic_Cations A 100.0 4.5E-45 9.7E-50 360.4 19.4 199 399-617 1-213 (213)
206 TIGR03873 F420-0_ABC_ATP propo 100.0 1.5E-44 3.2E-49 366.7 23.8 213 398-624 2-226 (256)
207 PRK14275 phosphate ABC transpo 100.0 1.7E-44 3.6E-49 371.2 24.1 226 397-633 39-278 (286)
208 COG1118 CysA ABC-type sulfate/ 100.0 4.5E-45 9.9E-50 356.5 18.7 218 397-631 2-233 (345)
209 PRK09473 oppD oligopeptide tra 100.0 1.9E-44 4.1E-49 376.5 24.8 229 397-634 12-260 (330)
210 PRK11300 livG leucine/isoleuci 100.0 2.1E-44 4.6E-49 365.7 24.2 220 397-624 5-243 (255)
211 PRK14263 phosphate ABC transpo 100.0 3.2E-44 6.8E-49 364.5 25.4 219 397-625 8-246 (261)
212 cd03257 ABC_NikE_OppD_transpor 100.0 2.9E-44 6.2E-49 358.7 24.3 213 398-617 2-228 (228)
213 PRK13639 cbiO cobalt transport 100.0 2.2E-44 4.8E-49 368.6 24.0 214 398-624 2-226 (275)
214 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-44 4.9E-49 373.6 24.2 213 397-624 4-224 (303)
215 PRK14264 phosphate ABC transpo 100.0 4E-44 8.7E-49 371.6 25.9 219 397-625 45-290 (305)
216 PRK14255 phosphate ABC transpo 100.0 2.7E-44 6E-49 364.1 24.1 219 397-625 5-237 (252)
217 PRK10908 cell division protein 100.0 2.4E-44 5.3E-49 357.5 23.1 204 398-614 2-216 (222)
218 PRK10895 lipopolysaccharide AB 100.0 2E-44 4.3E-49 362.6 22.6 217 398-624 4-226 (241)
219 cd03246 ABCC_Protease_Secretio 100.0 2.1E-44 4.5E-49 343.4 21.4 172 398-613 1-173 (173)
220 PRK14258 phosphate ABC transpo 100.0 4.4E-44 9.5E-49 364.0 25.1 220 396-625 6-246 (261)
221 PRK14265 phosphate ABC transpo 100.0 5.7E-44 1.2E-48 365.2 25.9 219 397-625 20-259 (274)
222 cd03269 ABC_putative_ATPase Th 100.0 1.9E-44 4.2E-49 355.1 21.5 202 398-617 1-210 (210)
223 TIGR01277 thiQ thiamine ABC tr 100.0 4E-44 8.7E-49 353.5 23.8 203 398-618 1-212 (213)
224 TIGR03522 GldA_ABC_ATP gliding 100.0 3.4E-44 7.4E-49 371.6 24.2 212 398-624 3-221 (301)
225 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-44 4.6E-49 355.7 21.5 202 398-613 1-213 (213)
226 PRK14246 phosphate ABC transpo 100.0 4.9E-44 1.1E-48 362.2 24.6 228 397-635 10-251 (257)
227 PRK11144 modC molybdate transp 100.0 3.5E-44 7.7E-49 378.5 24.1 210 398-625 2-219 (352)
228 cd03299 ABC_ModC_like Archeal 100.0 7.4E-44 1.6E-48 356.8 24.6 211 398-625 1-220 (235)
229 PRK11701 phnK phosphonate C-P 100.0 7.8E-44 1.7E-48 361.9 24.9 228 397-635 6-251 (258)
230 PRK15093 antimicrobial peptide 100.0 9.3E-44 2E-48 372.3 26.2 228 398-634 4-257 (330)
231 PRK13547 hmuV hemin importer A 100.0 8E-44 1.7E-48 362.7 24.6 213 398-624 2-244 (272)
232 TIGR01978 sufC FeS assembly AT 100.0 4.5E-44 9.9E-49 360.7 22.3 215 398-624 1-234 (243)
233 PRK09984 phosphonate/organopho 100.0 7.1E-44 1.5E-48 363.0 23.4 212 397-622 4-240 (262)
234 PRK13536 nodulation factor exp 100.0 7.9E-44 1.7E-48 372.7 24.1 213 397-624 41-261 (340)
235 PRK10418 nikD nickel transport 100.0 1.4E-43 3E-48 359.0 24.6 228 397-638 4-244 (254)
236 TIGR01188 drrA daunorubicin re 100.0 9.6E-44 2.1E-48 368.7 22.1 200 413-624 6-213 (302)
237 PRK10419 nikE nickel transport 100.0 2.1E-43 4.6E-48 360.0 23.6 228 398-634 4-249 (268)
238 cd03234 ABCG_White The White s 100.0 1.1E-43 2.3E-48 353.7 20.4 211 398-617 4-226 (226)
239 PRK11248 tauB taurine transpor 100.0 2.6E-43 5.7E-48 356.5 23.2 203 398-619 2-215 (255)
240 TIGR02982 heterocyst_DevA ABC 100.0 2.6E-43 5.7E-48 349.4 22.6 205 398-613 2-219 (220)
241 COG1131 CcmA ABC-type multidru 100.0 2.8E-43 6E-48 361.4 23.6 214 397-624 4-226 (293)
242 TIGR02142 modC_ABC molybdenum 100.0 3.2E-43 7E-48 371.8 23.8 207 402-625 4-222 (354)
243 TIGR03740 galliderm_ABC gallid 100.0 7.7E-43 1.7E-47 346.9 22.8 206 398-621 1-210 (223)
244 TIGR02323 CP_lyasePhnK phospho 100.0 1.6E-42 3.5E-47 351.4 25.0 228 397-635 3-248 (253)
245 cd03230 ABC_DR_subfamily_A Thi 100.0 7.6E-43 1.6E-47 332.6 20.8 170 398-613 1-173 (173)
246 cd03233 ABC_PDR_domain1 The pl 100.0 9.9E-43 2.1E-47 340.1 21.9 190 398-617 4-202 (202)
247 cd03229 ABC_Class3 This class 100.0 9.5E-43 2.1E-47 333.6 20.7 172 398-612 1-178 (178)
248 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-42 2.5E-47 330.8 21.1 171 398-612 1-171 (171)
249 PRK09544 znuC high-affinity zi 100.0 3E-42 6.6E-47 347.5 24.7 208 397-635 4-217 (251)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-42 3.2E-47 342.7 21.2 200 399-617 3-214 (214)
251 CHL00131 ycf16 sulfate ABC tra 100.0 2.8E-42 6E-47 349.6 23.8 215 397-623 7-240 (252)
252 PRK15056 manganese/iron transp 100.0 2.7E-42 5.8E-47 352.9 23.0 210 397-624 6-230 (272)
253 COG4175 ProV ABC-type proline/ 100.0 9.6E-43 2.1E-47 340.2 18.4 225 397-633 4-262 (386)
254 PRK09580 sufC cysteine desulfu 100.0 1.6E-42 3.5E-47 350.5 20.6 221 398-624 2-235 (248)
255 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-42 4E-47 335.6 20.1 182 397-617 3-192 (192)
256 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-42 3.3E-47 340.7 19.6 195 400-608 1-206 (206)
257 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-42 5.4E-47 335.1 20.7 183 397-617 3-194 (194)
258 cd03215 ABC_Carb_Monos_II This 100.0 2.6E-42 5.6E-47 331.8 19.9 171 398-613 5-182 (182)
259 cd03223 ABCD_peroxisomal_ALDP 100.0 4E-42 8.7E-47 325.0 20.7 164 398-612 1-164 (166)
260 COG0410 LivF ABC-type branched 100.0 8.1E-42 1.7E-46 323.3 22.5 218 398-624 4-226 (237)
261 KOG0060 Long-chain acyl-CoA tr 100.0 2E-39 4.2E-44 339.4 42.4 462 132-611 138-642 (659)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.7E-42 1.5E-46 333.9 22.1 186 398-624 1-193 (200)
263 TIGR02770 nickel_nikD nickel i 100.0 4.7E-42 1E-46 342.7 21.0 208 415-633 1-223 (230)
264 COG4619 ABC-type uncharacteriz 100.0 1.7E-42 3.7E-47 308.7 15.3 193 412-614 15-213 (223)
265 PRK10261 glutathione transport 100.0 1.1E-41 2.5E-46 385.8 25.4 228 397-636 313-565 (623)
266 cd03214 ABC_Iron-Siderophores_ 100.0 6.5E-42 1.4E-46 328.4 19.6 177 399-617 1-180 (180)
267 PRK03695 vitamin B12-transport 100.0 2E-41 4.3E-46 341.7 24.1 216 399-636 2-231 (248)
268 TIGR01184 ntrCD nitrate transp 100.0 1.1E-41 2.3E-46 339.9 21.6 192 416-623 1-203 (230)
269 COG1123 ATPase components of v 100.0 1.3E-41 2.8E-46 362.6 23.3 229 397-637 280-531 (539)
270 cd03231 ABC_CcmA_heme_exporter 100.0 2.6E-41 5.7E-46 330.1 22.3 195 398-608 1-198 (201)
271 PRK15439 autoinducer 2 ABC tra 100.0 2.5E-41 5.5E-46 375.5 24.8 214 397-624 11-229 (510)
272 PRK13540 cytochrome c biogenes 100.0 2.4E-41 5.1E-46 330.3 20.8 195 398-607 2-198 (200)
273 cd03216 ABC_Carb_Monos_I This 100.0 6.3E-41 1.4E-45 315.8 21.5 159 398-615 1-162 (163)
274 cd03267 ABC_NatA_like Similar 100.0 3.7E-41 8.1E-46 337.3 20.6 193 413-617 34-236 (236)
275 PRK09700 D-allose transporter 100.0 2.7E-41 5.9E-46 376.0 21.8 213 398-624 6-234 (510)
276 PRK13549 xylose transporter AT 100.0 7.5E-41 1.6E-45 371.9 25.1 214 397-624 5-232 (506)
277 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-41 3.3E-46 312.0 15.5 213 398-624 2-222 (245)
278 COG0444 DppD ABC-type dipeptid 100.0 1.2E-40 2.5E-45 331.7 23.2 225 398-634 2-252 (316)
279 PRK13538 cytochrome c biogenes 100.0 7.9E-41 1.7E-45 327.6 21.2 196 398-608 2-202 (204)
280 PRK10762 D-ribose transporter 100.0 5.3E-41 1.1E-45 372.7 21.6 213 398-624 5-230 (501)
281 PRK15134 microcin C ABC transp 100.0 8.5E-41 1.8E-45 373.5 23.2 217 397-625 275-516 (529)
282 PRK10938 putative molybdenum t 100.0 1.3E-40 2.8E-45 369.0 23.5 210 398-624 4-224 (490)
283 PRK10261 glutathione transport 100.0 1.3E-40 2.7E-45 377.3 23.8 221 397-625 12-259 (623)
284 PRK11288 araG L-arabinose tran 100.0 1.7E-40 3.7E-45 368.6 23.6 208 398-619 5-224 (501)
285 PRK15134 microcin C ABC transp 100.0 3.5E-40 7.5E-45 368.5 25.8 220 398-625 6-247 (529)
286 PRK13539 cytochrome c biogenes 100.0 2.6E-40 5.6E-45 324.6 21.5 195 398-610 3-200 (207)
287 PRK13543 cytochrome c biogenes 100.0 2.8E-40 6E-45 326.1 21.7 197 397-610 11-212 (214)
288 TIGR01189 ccmA heme ABC export 100.0 2.7E-40 5.9E-45 322.4 20.7 194 398-607 1-197 (198)
289 PRK10982 galactose/methyl gala 100.0 2E-40 4.4E-45 367.3 22.3 214 400-623 1-222 (491)
290 COG4172 ABC-type uncharacteriz 100.0 6.9E-40 1.5E-44 329.0 23.4 224 397-633 276-524 (534)
291 TIGR02324 CP_lyasePhnL phospho 100.0 3.1E-40 6.7E-45 328.6 20.8 201 398-608 2-222 (224)
292 PLN03211 ABC transporter G-25; 100.0 5E-40 1.1E-44 371.7 24.9 201 413-624 81-296 (659)
293 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-40 2.4E-45 377.3 19.3 219 397-624 17-256 (617)
294 PRK10535 macrolide transporter 100.0 7E-40 1.5E-44 372.4 25.9 216 397-623 4-231 (648)
295 PRK13545 tagH teichoic acids e 100.0 8.9E-40 1.9E-44 349.9 24.8 213 397-635 21-241 (549)
296 TIGR03771 anch_rpt_ABC anchore 100.0 3.2E-40 7E-45 327.6 19.7 195 421-635 1-209 (223)
297 COG1123 ATPase components of v 100.0 4.9E-40 1.1E-44 350.5 22.2 228 397-634 5-253 (539)
298 TIGR03269 met_CoM_red_A2 methy 100.0 5.2E-40 1.1E-44 366.6 22.8 222 397-624 279-517 (520)
299 PRK13546 teichoic acids export 100.0 1.2E-39 2.7E-44 330.2 23.4 213 397-635 4-241 (264)
300 PRK13541 cytochrome c biogenes 100.0 5.3E-40 1.2E-44 319.4 19.9 190 398-606 2-193 (195)
301 COG4608 AppF ABC-type oligopep 100.0 4.1E-40 9E-45 321.2 18.9 194 398-634 5-208 (268)
302 TIGR02633 xylG D-xylose ABC tr 100.0 4.9E-40 1.1E-44 365.3 21.9 213 398-623 2-229 (500)
303 COG1137 YhbG ABC-type (unclass 100.0 8.2E-41 1.8E-45 306.8 12.8 222 397-625 4-229 (243)
304 TIGR01166 cbiO cobalt transpor 100.0 4.1E-40 8.8E-45 319.1 17.9 175 413-598 5-189 (190)
305 TIGR03269 met_CoM_red_A2 methy 100.0 6.3E-40 1.4E-44 365.9 21.7 213 398-624 1-258 (520)
306 COG0411 LivG ABC-type branched 100.0 2.5E-40 5.4E-45 315.6 15.7 214 398-625 5-240 (250)
307 COG4181 Predicted ABC-type tra 100.0 6E-40 1.3E-44 293.4 16.7 209 397-616 6-227 (228)
308 PRK13549 xylose transporter AT 100.0 5.7E-40 1.2E-44 364.8 20.6 217 397-623 259-493 (506)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.2E-39 2.7E-44 323.5 19.4 194 398-617 23-224 (224)
310 TIGR01257 rim_protein retinal- 100.0 3.6E-39 7.8E-44 390.8 25.3 217 396-625 927-1150(2272)
311 COG4598 HisP ABC-type histidin 100.0 1.3E-39 2.9E-44 293.1 15.5 225 397-635 6-252 (256)
312 TIGR01257 rim_protein retinal- 100.0 1.3E-37 2.9E-42 377.2 38.1 215 397-624 1937-2159(2272)
313 COG4559 ABC-type hemin transpo 100.0 9.8E-39 2.1E-43 295.8 20.5 213 398-624 2-230 (259)
314 PRK09700 D-allose transporter 100.0 4.2E-39 9E-44 358.5 21.0 210 397-621 265-495 (510)
315 TIGR00956 3a01205 Pleiotropic 100.0 7.4E-39 1.6E-43 388.4 24.7 213 397-620 759-989 (1394)
316 TIGR01187 potA spermidine/putr 100.0 7E-39 1.5E-43 334.8 19.7 187 431-631 1-196 (325)
317 COG1129 MglA ABC-type sugar tr 100.0 2.7E-38 5.9E-43 335.0 23.8 210 397-618 8-228 (500)
318 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-38 2.6E-43 354.2 21.2 215 397-621 257-489 (500)
319 PRK10762 D-ribose transporter 100.0 1.5E-38 3.3E-43 352.9 19.9 209 397-623 257-483 (501)
320 PRK15064 ABC transporter ATP-b 100.0 4.1E-38 8.9E-43 351.9 23.3 201 397-624 319-525 (530)
321 PRK11288 araG L-arabinose tran 100.0 2.3E-38 5E-43 351.6 19.6 211 397-624 257-485 (501)
322 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.1E-38 1.3E-42 314.8 20.6 195 405-624 1-207 (246)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5E-38 1.1E-42 352.4 22.3 210 397-624 4-248 (552)
324 PRK11819 putative ABC transpor 100.0 6E-38 1.3E-42 351.8 22.6 210 397-624 6-250 (556)
325 PRK15064 ABC transporter ATP-b 100.0 8.2E-38 1.8E-42 349.5 23.4 209 398-624 2-242 (530)
326 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.7E-38 3.6E-43 320.1 15.9 202 401-617 4-220 (255)
327 PRK15177 Vi polysaccharide exp 100.0 5.6E-38 1.2E-42 308.9 18.9 187 415-624 2-192 (213)
328 COG4161 ArtP ABC-type arginine 100.0 6.2E-38 1.3E-42 277.5 16.8 214 397-624 2-230 (242)
329 COG4525 TauB ABC-type taurine 100.0 4.7E-38 1E-42 287.2 15.6 205 398-619 4-219 (259)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-37 3.5E-42 286.1 18.7 143 398-612 1-144 (144)
331 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-37 3.5E-42 345.0 19.4 213 397-624 268-492 (510)
332 COG4148 ModC ABC-type molybdat 100.0 1.7E-37 3.6E-42 298.5 15.9 197 417-625 15-219 (352)
333 PRK10938 putative molybdenum t 100.0 2.5E-37 5.5E-42 342.7 19.3 208 397-618 260-486 (490)
334 COG4604 CeuD ABC-type enteroch 100.0 2.3E-37 5E-42 283.2 14.7 221 398-636 2-234 (252)
335 PRK10982 galactose/methyl gala 100.0 5.2E-37 1.1E-41 340.1 19.5 214 397-622 250-478 (491)
336 COG3845 ABC-type uncharacteriz 100.0 1.5E-36 3.2E-41 314.8 21.1 212 397-618 4-223 (501)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.5E-36 1.6E-40 280.0 19.5 155 399-612 1-157 (157)
338 PRK11819 putative ABC transpor 100.0 1E-35 2.2E-40 333.7 23.5 202 397-624 324-533 (556)
339 PLN03073 ABC transporter F fam 100.0 8.8E-36 1.9E-40 338.9 23.0 201 397-623 508-713 (718)
340 cd03222 ABC_RNaseL_inhibitor T 100.0 4.4E-36 9.5E-41 284.3 16.5 155 401-624 4-163 (177)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-35 2.8E-40 333.0 22.9 202 397-624 322-531 (552)
342 PLN03140 ABC transporter G fam 100.0 2E-35 4.4E-40 357.1 25.5 214 397-620 867-1106(1470)
343 PRK10636 putative ABC transpor 100.0 1.4E-35 3.1E-40 336.3 22.6 200 397-624 312-517 (638)
344 PRK11147 ABC transporter ATPas 100.0 2.2E-35 4.9E-40 335.5 23.2 201 397-624 319-528 (635)
345 PRK13409 putative ATPase RIL; 100.0 1.8E-35 4E-40 330.6 21.5 192 397-618 340-536 (590)
346 cd03238 ABC_UvrA The excision 100.0 3.4E-35 7.4E-40 278.0 18.5 161 412-617 7-176 (176)
347 COG1101 PhnK ABC-type uncharac 100.0 1.5E-35 3.3E-40 275.2 15.0 205 412-618 18-232 (263)
348 PRK10636 putative ABC transpor 100.0 2.1E-34 4.5E-39 326.8 23.3 208 398-624 2-236 (638)
349 COG4167 SapF ABC-type antimicr 100.0 8.9E-35 1.9E-39 262.7 15.8 212 414-637 27-252 (267)
350 COG4172 ABC-type uncharacteriz 100.0 1.8E-34 4E-39 290.0 18.8 231 398-637 7-259 (534)
351 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-34 2.4E-39 352.2 19.7 203 413-623 74-299 (1394)
352 PRK11147 ABC transporter ATPas 100.0 5E-34 1.1E-38 324.4 23.3 207 398-624 4-243 (635)
353 PLN03140 ABC transporter G fam 100.0 3.7E-34 8.1E-39 346.2 17.7 209 413-624 178-427 (1470)
354 KOG0064 Peroxisomal long-chain 100.0 6.2E-30 1.3E-34 264.4 45.2 441 142-609 183-682 (728)
355 COG4136 ABC-type uncharacteriz 100.0 1.5E-33 3.2E-38 246.9 15.5 194 397-606 2-205 (213)
356 COG1119 ModF ABC-type molybden 100.0 6.7E-33 1.5E-37 264.6 19.5 208 397-618 31-256 (257)
357 COG1134 TagH ABC-type polysacc 100.0 7.3E-33 1.6E-37 264.9 19.5 189 412-624 39-236 (249)
358 PRK13409 putative ATPase RIL; 100.0 6.3E-34 1.4E-38 318.3 14.0 193 401-611 77-287 (590)
359 COG4152 ABC-type uncharacteriz 100.0 3.4E-33 7.3E-38 264.2 16.1 214 397-624 2-219 (300)
360 COG0396 sufC Cysteine desulfur 100.0 1.5E-32 3.3E-37 258.8 20.3 227 398-636 4-245 (251)
361 PF00005 ABC_tran: ABC transpo 100.0 1.1E-33 2.3E-38 259.2 11.9 136 416-566 1-137 (137)
362 PLN03073 ABC transporter F fam 100.0 7E-33 1.5E-37 315.2 19.5 221 397-624 177-431 (718)
363 COG0488 Uup ATPase components 100.0 1.1E-32 2.5E-37 300.2 19.9 206 397-624 3-240 (530)
364 KOG0061 Transporter, ABC super 100.0 1.3E-32 2.7E-37 308.3 18.2 219 396-624 24-260 (613)
365 COG4674 Uncharacterized ABC-ty 100.0 2.9E-32 6.3E-37 249.4 15.3 215 397-625 5-236 (249)
366 COG4133 CcmA ABC-type transpor 100.0 1.7E-31 3.7E-36 244.0 13.6 189 398-601 3-195 (209)
367 cd03270 ABC_UvrA_I The excisio 100.0 5.1E-31 1.1E-35 261.7 15.6 190 412-617 7-226 (226)
368 COG0488 Uup ATPase components 100.0 8.5E-30 1.8E-34 277.7 24.3 201 397-624 321-525 (530)
369 cd03271 ABC_UvrA_II The excisi 100.0 1.2E-30 2.7E-35 261.4 16.0 193 415-619 10-261 (261)
370 COG4586 ABC-type uncharacteriz 100.0 1.2E-30 2.7E-35 250.8 13.5 200 414-624 38-246 (325)
371 COG4107 PhnK ABC-type phosphon 100.0 5E-30 1.1E-34 230.1 14.5 228 398-637 7-253 (258)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 2.8E-30 6.1E-35 250.4 13.7 164 417-610 14-190 (197)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 7E-29 1.5E-33 244.5 11.6 192 397-613 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.9E-28 4.2E-33 246.9 13.2 192 397-609 3-234 (243)
375 COG4778 PhnL ABC-type phosphon 100.0 5E-28 1.1E-32 216.6 11.3 202 398-609 5-226 (235)
376 KOG0059 Lipid exporter ABCA1 a 99.9 3.2E-27 6.9E-32 276.1 16.6 216 396-624 563-787 (885)
377 PF00664 ABC_membrane: ABC tra 99.9 3.5E-23 7.6E-28 209.9 38.5 273 76-351 2-275 (275)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-26 2.3E-31 234.9 12.6 183 426-609 25-242 (251)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-26 3.8E-31 225.3 12.5 163 419-610 16-197 (204)
380 KOG0927 Predicted transporter 99.9 8.5E-27 1.8E-31 243.2 10.4 198 397-619 389-591 (614)
381 COG1129 MglA ABC-type sugar tr 99.9 1.1E-25 2.4E-30 239.2 18.0 213 397-620 263-486 (500)
382 COG4138 BtuD ABC-type cobalami 99.9 4E-27 8.6E-32 211.8 5.9 208 398-624 4-221 (248)
383 PRK00349 uvrA excinuclease ABC 99.9 9.6E-26 2.1E-30 260.4 18.4 100 526-625 818-928 (943)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.3E-26 2.8E-31 227.3 8.8 185 397-610 5-204 (212)
385 PRK00635 excinuclease ABC subu 99.9 3E-25 6.4E-30 266.1 20.5 211 397-624 600-906 (1809)
386 KOG0065 Pleiotropic drug resis 99.9 7.7E-26 1.7E-30 258.1 12.7 199 412-620 803-1017(1391)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.4E-25 7.3E-30 223.3 10.0 184 427-610 23-233 (247)
388 TIGR00630 uvra excinuclease AB 99.9 3.8E-24 8.2E-29 246.8 19.3 97 526-622 816-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 8.5E-24 1.8E-28 220.1 18.9 214 397-621 257-489 (501)
390 KOG0062 ATPase component of AB 99.9 1.1E-22 2.4E-27 211.4 15.4 211 397-640 362-576 (582)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 9.8E-23 2.1E-27 197.8 12.6 169 416-611 12-191 (198)
392 KOG0062 ATPase component of AB 99.9 8.4E-23 1.8E-27 212.3 7.7 203 395-625 78-286 (582)
393 KOG0066 eIF2-interacting prote 99.9 5.6E-22 1.2E-26 201.1 13.1 191 397-614 586-780 (807)
394 KOG0927 Predicted transporter 99.9 2E-21 4.3E-26 203.3 16.5 217 396-624 74-309 (614)
395 cd03239 ABC_SMC_head The struc 99.9 2E-21 4.2E-26 185.2 13.4 85 520-610 83-172 (178)
396 COG1245 Predicted ATPase, RNas 99.9 3.6E-21 7.9E-26 197.1 13.7 182 402-610 340-531 (591)
397 cd01128 rho_factor Transcripti 99.9 7.2E-22 1.6E-26 196.8 7.8 197 421-638 11-229 (249)
398 cd03241 ABC_RecN RecN ATPase i 99.8 5.9E-20 1.3E-24 188.1 15.7 77 537-613 170-250 (276)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.3E-20 7.1E-25 182.0 11.5 180 417-612 15-211 (213)
400 KOG0065 Pleiotropic drug resis 99.8 4.9E-20 1.1E-24 211.1 12.6 207 413-624 128-351 (1391)
401 COG4170 SapD ABC-type antimicr 99.8 1.3E-19 2.9E-24 167.9 12.6 209 413-633 20-256 (330)
402 COG2401 ABC-type ATPase fused 99.8 4E-19 8.6E-24 180.1 15.0 198 394-614 354-588 (593)
403 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.2E-19 2.5E-24 177.0 10.5 145 416-617 17-172 (200)
404 KOG2355 Predicted ABC-type tra 99.8 8.7E-19 1.9E-23 162.1 15.4 210 395-622 11-235 (291)
405 COG0178 UvrA Excinuclease ATPa 99.8 6.2E-19 1.3E-23 192.4 16.6 96 530-625 815-920 (935)
406 PRK00635 excinuclease ABC subu 99.8 9.2E-19 2E-23 210.8 19.7 213 416-630 1506-1801(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 1.5E-18 3.2E-23 163.4 10.2 135 420-610 15-155 (162)
408 cd03242 ABC_RecF RecF is a rec 99.7 2.9E-17 6.4E-22 167.7 14.0 191 416-613 12-269 (270)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 7.9E-18 1.7E-22 166.1 9.5 152 413-618 17-175 (222)
410 cd00820 PEPCK_HprK Phosphoenol 99.7 5.5E-18 1.2E-22 144.8 6.0 75 414-496 3-77 (107)
411 COG1245 Predicted ATPase, RNas 99.7 1.8E-17 3.8E-22 170.3 10.6 186 402-608 79-286 (591)
412 PRK00349 uvrA excinuclease ABC 99.7 4.8E-17 1E-21 188.6 12.5 99 526-624 477-585 (943)
413 TIGR00630 uvra excinuclease AB 99.7 8.1E-17 1.7E-21 186.4 13.5 99 526-624 475-583 (924)
414 cd03283 ABC_MutS-like MutS-lik 99.7 5.2E-17 1.1E-21 157.7 7.6 143 414-608 15-163 (199)
415 cd03243 ABC_MutS_homologs The 99.7 2.5E-16 5.4E-21 153.9 10.1 154 419-623 22-178 (202)
416 TIGR00606 rad50 rad50. This fa 99.7 3.9E-16 8.4E-21 191.0 13.6 134 485-624 1153-1308(1311)
417 TIGR02858 spore_III_AA stage I 99.6 7.1E-16 1.5E-20 155.6 11.5 142 427-623 112-268 (270)
418 PRK00064 recF recombination pr 99.6 5.3E-14 1.1E-18 149.3 16.5 76 536-613 272-359 (361)
419 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.1E-14 2.3E-19 143.4 9.3 149 414-622 19-179 (216)
420 KOG0066 eIF2-interacting prote 99.5 5.3E-15 1.1E-19 150.8 6.7 195 397-619 264-494 (807)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 4.9E-14 1.1E-18 139.8 11.6 73 537-609 136-212 (220)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.5 6.4E-14 1.4E-18 136.3 11.2 140 413-603 16-158 (204)
423 KOG0063 RNAse L inhibitor, ABC 99.5 1.4E-13 3E-18 140.7 13.3 196 404-624 342-548 (592)
424 PHA02562 46 endonuclease subun 99.5 2.2E-14 4.9E-19 162.4 7.7 106 506-613 432-555 (562)
425 PRK07721 fliI flagellum-specif 99.4 3.3E-12 7.1E-17 137.2 16.9 173 413-621 146-340 (438)
426 TIGR00634 recN DNA repair prot 99.3 2.2E-12 4.8E-17 145.0 9.0 76 537-612 440-519 (563)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.3 6.9E-12 1.5E-16 123.2 10.9 134 415-602 18-160 (213)
428 PTZ00132 GTP-binding nuclear p 99.3 4.6E-12 1E-16 125.1 8.8 43 541-583 156-203 (215)
429 PRK10869 recombination and rep 99.3 5.5E-12 1.2E-16 140.5 9.9 76 537-612 430-509 (553)
430 PRK14079 recF recombination pr 99.3 4.4E-11 9.4E-16 126.4 14.7 77 536-617 262-347 (349)
431 smart00534 MUTSac ATPase domai 99.3 5.4E-12 1.2E-16 121.4 6.0 78 532-612 56-138 (185)
432 PRK13695 putative NTPase; Prov 99.2 4.5E-12 9.8E-17 120.8 4.4 79 535-616 76-156 (174)
433 TIGR01069 mutS2 MutS2 family p 99.2 9.9E-11 2.1E-15 134.8 15.0 148 397-598 295-447 (771)
434 COG0178 UvrA Excinuclease ATPa 99.2 8.2E-11 1.8E-15 129.7 13.3 110 519-630 464-582 (935)
435 TIGR02788 VirB11 P-type DNA tr 99.2 3.1E-11 6.8E-16 125.5 8.3 144 419-624 137-281 (308)
436 TIGR00611 recf recF protein. A 99.2 3.3E-10 7.1E-15 120.1 16.0 63 536-600 274-345 (365)
437 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.6E-10 3.6E-15 113.6 10.1 47 413-459 18-65 (222)
438 PRK01156 chromosome segregatio 99.1 1.3E-10 2.9E-15 138.5 10.5 76 534-609 798-883 (895)
439 TIGR03238 dnd_assoc_3 dnd syst 99.1 4.4E-11 9.5E-16 126.9 4.7 67 414-483 20-87 (504)
440 PRK08533 flagellar accessory p 99.1 1E-09 2.2E-14 109.1 13.9 144 423-609 21-184 (230)
441 KOG0063 RNAse L inhibitor, ABC 99.1 1.8E-10 3.8E-15 118.3 6.6 170 424-608 98-286 (592)
442 PRK13830 conjugal transfer pro 99.1 8.1E-10 1.8E-14 129.0 13.0 66 553-618 650-727 (818)
443 cd01124 KaiC KaiC is a circadi 99.0 2E-09 4.4E-14 103.6 12.9 84 526-609 60-163 (187)
444 PRK03918 chromosome segregatio 99.0 4E-10 8.8E-15 134.5 9.5 74 536-609 787-867 (880)
445 PRK00409 recombination and DNA 99.0 3.7E-10 8.1E-15 130.4 8.8 80 533-614 386-468 (782)
446 cd01131 PilT Pilus retraction 99.0 7.1E-10 1.5E-14 107.8 8.2 119 428-609 3-122 (198)
447 TIGR02168 SMC_prok_B chromosom 99.0 4.2E-10 9.2E-15 138.7 8.2 75 534-608 1086-1164(1179)
448 TIGR00618 sbcc exonuclease Sbc 99.0 1.5E-09 3.3E-14 130.9 10.3 76 536-611 949-1036(1042)
449 PRK06793 fliI flagellum-specif 99.0 3.5E-09 7.5E-14 113.1 11.3 168 397-618 130-305 (432)
450 cd01120 RecA-like_NTPases RecA 98.9 7E-09 1.5E-13 97.0 11.9 129 428-599 1-140 (165)
451 PRK00300 gmk guanylate kinase; 98.9 2E-09 4.3E-14 105.5 7.6 79 424-512 3-93 (205)
452 TIGR00767 rho transcription te 98.9 4.4E-09 9.5E-14 110.1 10.4 81 365-453 104-195 (415)
453 TIGR02169 SMC_prok_A chromosom 98.9 1.9E-09 4.2E-14 132.7 8.7 75 536-610 1073-1151(1164)
454 smart00382 AAA ATPases associa 98.9 5.7E-08 1.2E-12 87.9 16.2 117 425-595 1-125 (148)
455 PRK11098 microcin B17 transpor 98.9 6E-05 1.3E-09 80.2 39.9 242 118-377 140-395 (409)
456 PRK12369 putative transporter; 98.9 8.1E-05 1.8E-09 77.6 39.0 241 118-376 65-320 (326)
457 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.2E-08 2.6E-13 100.2 9.5 138 413-602 17-159 (218)
458 PRK10733 hflB ATP-dependent me 98.8 5.7E-10 1.2E-14 127.0 -0.2 167 250-451 36-210 (644)
459 PF06472 ABC_membrane_2: ABC t 98.8 4.4E-05 9.6E-10 78.5 33.6 213 87-305 41-257 (281)
460 PRK06067 flagellar accessory p 98.8 1.3E-07 2.8E-12 94.7 14.4 151 422-610 21-187 (234)
461 PF13304 AAA_21: AAA domain; P 98.8 2E-08 4.3E-13 101.4 8.7 63 537-599 236-302 (303)
462 PRK02224 chromosome segregatio 98.8 1.6E-08 3.5E-13 120.7 8.8 76 536-611 780-869 (880)
463 PRK10246 exonuclease subunit S 98.7 2.8E-08 6.1E-13 119.4 9.0 76 535-610 947-1032(1047)
464 PRK06002 fliI flagellum-specif 98.7 5.1E-08 1.1E-12 104.3 9.1 85 396-483 138-229 (450)
465 TIGR01420 pilT_fam pilus retra 98.6 1.1E-07 2.5E-12 100.4 9.8 122 423-607 119-241 (343)
466 PF13748 ABC_membrane_3: ABC t 98.6 0.00018 3.9E-09 69.8 30.5 154 70-240 7-160 (237)
467 TIGR02524 dot_icm_DotB Dot/Icm 98.6 8.4E-08 1.8E-12 101.2 8.0 89 424-513 132-233 (358)
468 PRK01889 GTPase RsgA; Reviewed 98.6 5.5E-08 1.2E-12 103.0 6.2 99 416-517 185-286 (356)
469 PRK13891 conjugal transfer pro 98.6 9.2E-07 2E-11 104.1 16.6 54 548-601 680-735 (852)
470 cd01130 VirB11-like_ATPase Typ 98.6 7.4E-08 1.6E-12 92.8 6.0 78 415-495 14-94 (186)
471 PRK07196 fliI flagellum-specif 98.6 6.1E-08 1.3E-12 103.7 5.2 81 414-495 144-234 (434)
472 PF09818 ABC_ATPase: Predicted 98.5 7.8E-07 1.7E-11 93.5 13.1 171 403-613 227-416 (448)
473 cd01125 repA Hexameric Replica 98.5 1.1E-07 2.5E-12 95.4 5.6 45 551-596 107-159 (239)
474 TIGR00101 ureG urease accessor 98.5 2E-07 4.4E-12 90.5 6.8 106 428-542 3-108 (199)
475 COG3910 Predicted ATPase [Gene 98.4 2.5E-06 5.4E-11 79.2 11.5 85 536-622 128-214 (233)
476 cd02023 UMPK Uridine monophosp 98.4 4.2E-07 9.1E-12 88.5 6.5 109 428-571 1-114 (198)
477 PRK06995 flhF flagellar biosyn 98.4 3.6E-07 7.8E-12 99.2 6.5 140 419-595 249-401 (484)
478 TIGR02655 circ_KaiC circadian 98.4 1.1E-07 2.5E-12 105.0 1.8 156 422-609 17-190 (484)
479 PRK08149 ATP synthase SpaL; Va 98.3 4.8E-07 1E-11 96.7 5.7 67 414-481 140-213 (428)
480 PRK10078 ribose 1,5-bisphospho 98.3 4.7E-07 1E-11 87.2 4.7 56 425-483 1-56 (186)
481 PRK13898 type IV secretion sys 98.3 1.3E-05 2.9E-10 94.3 17.0 60 551-610 638-709 (800)
482 PLN02796 D-glycerate 3-kinase 98.3 2.6E-07 5.7E-12 95.5 2.2 61 414-474 80-151 (347)
483 PRK09825 idnK D-gluconate kina 98.3 7.9E-07 1.7E-11 84.7 4.7 53 425-483 2-55 (176)
484 TIGR03263 guanyl_kin guanylate 98.3 6.1E-07 1.3E-11 85.8 3.6 78 426-513 1-90 (180)
485 PLN03210 Resistant to P. syrin 98.2 2.8E-06 6E-11 104.0 9.7 44 419-462 200-244 (1153)
486 TIGR01026 fliI_yscN ATPase Fli 98.2 8.5E-06 1.8E-10 88.1 11.8 186 413-622 151-346 (440)
487 PRK15494 era GTPase Era; Provi 98.2 8.4E-07 1.8E-11 93.6 3.9 57 392-450 13-76 (339)
488 cd00071 GMPK Guanosine monopho 98.2 7.1E-07 1.5E-11 81.3 2.6 73 429-511 2-87 (137)
489 PRK06315 type III secretion sy 98.2 1.3E-06 2.8E-11 93.8 4.9 102 414-516 153-276 (442)
490 PRK05480 uridine/cytidine kina 98.2 2.9E-06 6.3E-11 83.3 6.7 69 424-513 4-77 (209)
491 TIGR02322 phosphon_PhnN phosph 98.2 3.2E-06 6.9E-11 80.8 6.8 62 426-488 1-78 (179)
492 TIGR00235 udk uridine kinase. 98.2 1E-06 2.2E-11 86.4 3.3 44 424-488 4-47 (207)
493 TIGR03881 KaiC_arch_4 KaiC dom 98.2 2.8E-06 6.2E-11 84.6 6.5 40 422-461 16-56 (229)
494 TIGR02903 spore_lon_C ATP-depe 98.2 5.6E-06 1.2E-10 93.9 9.4 109 426-582 175-291 (615)
495 COG3044 Predicted ATPase of th 98.2 1.6E-05 3.6E-10 81.8 11.5 160 420-614 237-412 (554)
496 TIGR02680 conserved hypothetic 98.2 3.3E-06 7.1E-11 103.9 7.7 61 535-597 1245-1317(1353)
497 cd01123 Rad51_DMC1_radA Rad51_ 98.1 1E-05 2.2E-10 81.0 9.5 82 422-511 15-103 (235)
498 COG0419 SbcC ATPase involved i 98.1 5.7E-06 1.2E-10 98.8 9.0 76 536-611 814-898 (908)
499 cd00009 AAA The AAA+ (ATPases 98.1 2.1E-05 4.6E-10 71.5 10.3 54 543-597 72-131 (151)
500 PRK00454 engB GTP-binding prot 98.1 4.3E-06 9.3E-11 81.0 5.9 53 530-586 140-195 (196)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-120 Score=976.91 Aligned_cols=575 Identities=38% Similarity=0.599 Sum_probs=540.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 59 PSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 138 (643)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (643)
...++++.+.+++|+.+..+.++.++........|.+.|++++..+..... .......+..+.++.++++++.+++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999987651111 122233455566777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006496 139 YFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218 (643)
Q Consensus 139 ~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (643)
++..+++++..++|.++|+++++++++||| ++.+|++++|++.|+..+.+.+...+...+.+.+..++++++|++++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQS 298 (643)
Q Consensus 219 ~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 298 (643)
.++++.++.+|+++++...+++++++..++.+++.++.++...|.+++++|||+|+.|+.+.+||.+..++..+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 006496 299 WIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRH 378 (643)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 378 (643)
...+.+.....+...+....++++|++++..|.+|.|.+.+++.|...+...+..++.++..+.++.+|..|++++++.+
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE
Q 006496 379 TKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 458 (643)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~ 458 (643)
|..+.+ ....|...+|.|+|+||+|+||.+|+.+||+|+||+|+|||.||+||||||||||++++|+|+|+|++|+|.
T Consensus 449 P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 887554 222333568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 459 IDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 459 idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+||+||++++.++||++|++|.|||.||+|||+|||.||. +.+++|++.+|+++|++||||.++|+||||.|||+|.+|
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 9999999999999999999999999999999999999995 589999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
||||||||||||||+|||.||||||||||||+++|..||++|.+..+++|||+|||||+||++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCCCcHHHHHHHhhcCC
Q 006496 619 HQSLLAKGPAGAYYSLVSLQTTP 641 (643)
Q Consensus 619 ~~eLl~~~~~g~y~~l~~~q~~~ 641 (643)
|+||+++ ++|.|++|+++|...
T Consensus 686 h~eLl~~-~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSK-PNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhC-cccHHHHHHHHhccc
Confidence 9999985 679999999998654
No 2
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-116 Score=997.09 Aligned_cols=580 Identities=50% Similarity=0.830 Sum_probs=553.3
Q ss_pred ChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006496 57 TAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQ 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (643)
...++.+++++.+++|+.+++|.+.+++.++..|+++++++.++..+...+.+........|+++++++++...+..+++
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q 727 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ 727 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999987755544444444458889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 137 QYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLII 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (643)
.|++...++++..++|.++|+++++++++|||.++|+ |.+.+|+.+|...++..+++.+..+++.+..+++++++.|++
T Consensus 728 ~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~ 806 (1228)
T KOG0055|consen 728 HYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY 806 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888 999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 006496 217 SWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVR 296 (643)
Q Consensus 217 ~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|.++++++++.|++++..+...+++....++..++.++..+...|++++||||++|+.|+++.+.|.+..++..+...+
T Consensus 807 ~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 297 QSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
+.++.++..++.+.+.++..++++|+|++++..|.+++.+++.++..+......+.+...+.+++.++..|+.+++++++
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcE
Q 006496 377 RHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~ 456 (643)
++|+++++.+.+..++..+|+|+|+||+|+||.+|+.+||+|+||+|++||++|+||||||||||++.+|.|+|+|.+|.
T Consensus 967 r~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~ 1046 (1228)
T KOG0055|consen 967 RKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK 1046 (1228)
T ss_pred CCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 99877665444445566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCC
Q 006496 457 VKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536 (643)
Q Consensus 457 I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~ 536 (643)
|.|||+|++++++++||++|+.|+|||.||++||||||+||. ++++++|+.+|++.|++|+||.+||+||||.|||+|.
T Consensus 1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 999999999999999999999999999999999999999994 4599999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEE
Q 006496 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~ 616 (643)
+||||||||||||||++|||+||||||||||||.++|+.||++|++...+||+|+|||||+||++||.|+|++||+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhhcCCCcHHHHHHHhhcC
Q 006496 617 GSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
|||+||++ ++|.|++|++.|..
T Consensus 1206 GtH~~L~~--~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLA--KRGIYFRLVQLQSS 1227 (1228)
T ss_pred ccHHHHHh--CCCchHHHhhhccC
Confidence 99999999 89999999999864
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.2e-105 Score=891.39 Aligned_cols=569 Identities=30% Similarity=0.480 Sum_probs=522.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+.+++.....++..+.-.++.+++..++..+.|+++..++|.+..... ...+.....+++++++...++.+++.++
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~ 217 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYL 217 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777666777777777788888888888887654322 1223344555666777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
...++.++...+-.++|+|++++|++||. ++++|++++|+ +|++.+++++.......+..+..+++.++++++++|.
T Consensus 218 ~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~ 294 (709)
T COG2274 218 IAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK 294 (709)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 68999999999 8999999999888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
+++++++.+|++++..++..+++++..++..+..++..+.+.|++.|+++||+.+.|+++..+|++...+..+..++...
T Consensus 295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~ 374 (709)
T COG2274 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
.......+..++..+..++++|+|++++..|.+|.|.++++.++...+..|+..+..+|.++++...+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
|.+.+.. ...++..+|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+
T Consensus 455 E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 455 EQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred ccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 6443321 22345567899999999999865 347999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||.|++++++.++|++|+|||||++||+|||||||+++ ++++++|++++||+.+++||||.++|.||||+|||+|.|||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999 56899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|||||||+||||+++||+||||||||||||++||+.|.+.|.+...+||+|+||||++++++||||+|||+|+|+|+|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHhhc
Q 006496 620 QSLLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~q~ 639 (643)
+||++ .+|.|+++|+.|.
T Consensus 692 ~ell~--~~g~y~~l~~~q~ 709 (709)
T COG2274 692 EELLA--QGGLYARLYQQQE 709 (709)
T ss_pred HHHHH--hcChHHHHHhccC
Confidence 99999 6999999999874
No 4
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-105 Score=900.74 Aligned_cols=576 Identities=41% Similarity=0.652 Sum_probs=534.8
Q ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLALN-IPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 61 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
+..++++. +.++..+.+|.+.+++.+++.|+..+++|.+.+.+..............+++.++.+++..++..+++..+
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c 94 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSC 94 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443 45678888999999999999999999999999876543321112345567777888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
+.+.++|...++|++.++.+|+++++||| .+.+|++.+++++|++.+++.+++.+..+++.+.+++.++++.|+.+|.
T Consensus 95 ~~~~geRq~~riR~~yl~~iLrQdi~~fD--~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~ 172 (1228)
T KOG0055|consen 95 WMRTGERQTARIRSKYLKAILRQDIGWFD--TNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK 172 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceee--cccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5667999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
++++++.+.|++++......+.+.+...+.+++.++......|++.++|||.+|+.|++..++|.+..+...+...+...
T Consensus 173 Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~ 252 (1228)
T KOG0055|consen 173 LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGL 252 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
+.++..++..++.++.+++.+|+|+.++..+..++|.++.++..+......+.+....+..+..+..+..++++.++..|
T Consensus 253 ~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~ 332 (1228)
T KOG0055|consen 253 FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKP 332 (1228)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999888
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.++....+.......|.|+|+||+|+||.+|+.++|+|+||+|++||+|||||+|||||||++++|.|+|+|++|+|+|
T Consensus 333 ~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 333 SIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred CCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 76654433334445678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||.|+++++.++||++|++|.|||.||++||+|||.||+ ++++++++.+|++.+++++||.+||+||||.|||+|.+||
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~-~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK-PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCC-CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 999999999999999999999999999999999999995 6899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|||||||||||||+|||+||||||||||||+++|+.||++|++..++||+|+|||||++|++||+|+||++|+|||.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHhhcCC
Q 006496 620 QSLLAKGPAGAYYSLVSLQTTP 641 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~q~~~ 641 (643)
+||++ .+|.|++|++.|...
T Consensus 572 ~ELi~--~~G~Y~~lv~~Q~~~ 591 (1228)
T KOG0055|consen 572 DELIA--LGGIYSSLVRLQELE 591 (1228)
T ss_pred HHHHh--ccchHHHHHHHHhhh
Confidence 99999 569999999988543
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.3e-99 Score=853.48 Aligned_cols=569 Identities=22% Similarity=0.318 Sum_probs=485.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (643)
+++++.+.+++++.++++.++.++..++.+..|++++.+++........ ......++.+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888888888888889999999999999865421111 11122334445555667778888888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006496 141 AYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRL 220 (643)
Q Consensus 141 ~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (643)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 78899999999999999999988888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 221 ALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWI 300 (643)
Q Consensus 221 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++|+.+++.....+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777888888888888899999999999999999999999999999999999999888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 301 AGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSL---------FEIFLILVSTGKVIADAGTMTTDIAKGSDAVASV 371 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri 371 (643)
......+..++..+..+++++++++.+ .|.+++|.+ +.++.+...+..|+..+...+..+..+..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666656555555554444444444443 366776653 2222344456788999999999999999999999
Q ss_pred HHHHccCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC
Q 006496 372 FAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD 451 (643)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~ 451 (643)
.++++.+++..... ....+....+.|+|+||+|.|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 325 VTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred HHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 99997654321111 111111123469999999888643 46999999999999999999999999999999999999
Q ss_pred CCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhccccccccc
Q 006496 452 PLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWC 531 (643)
Q Consensus 452 ~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~v 531 (643)
|++|+|.+||+|+++++.+++|++|+||||||+||+|||||||++|. ++++|||+++||+.|++++||++||+||||.|
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999994 57999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCC
Q 006496 532 GDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQG 611 (643)
Q Consensus 532 ge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G 611 (643)
||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|++..+++|+|+||||++++++||+|+||++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEEcChhHHhhcCCCcHHHHHHHhhcCC
Q 006496 612 RVVEEGSHQSLLAKGPAGAYYSLVSLQTTP 641 (643)
Q Consensus 612 ~Ive~G~~~eLl~~~~~g~y~~l~~~q~~~ 641 (643)
+|+|.|+|+||++ ++|.|+++++.|.++
T Consensus 560 ~i~e~G~~~eL~~--~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 560 QIVQQGDYAELSQ--AGGLFATLLAHRQEE 587 (588)
T ss_pred eEeecCCHHHHHh--cchHHHHHHHHhhcC
Confidence 9999999999998 689999999988764
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.5e-97 Score=838.31 Aligned_cols=562 Identities=37% Similarity=0.564 Sum_probs=496.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 62 RRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 141 (643)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 141 (643)
++++.+.+ ++ .+..+.++.++...+....|.+++.+++... .. ......+...++++.++..++.++..++..
T Consensus 5 ~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (567)
T COG1132 5 RRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD----LGELLELLLLLLLLALLGGVLRALQSYLGS 77 (567)
T ss_pred HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 56 6777777777788888888898898888765 11 111223334444555566777777778777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006496 142 YMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLA 221 (643)
Q Consensus 142 ~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (643)
+.+.+...++|.++|++++++|+++|+ ++++|++++|+++|++.++..+......+...+..++..+++++.++|.++
T Consensus 78 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (567)
T COG1132 78 RLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLA 155 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888999999999999999999999998 678999999999999999999888755566567888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 222 LVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIA 301 (643)
Q Consensus 222 lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (643)
++++...|++.+......++.++..++..+..++..+.+.|.++|+++||+|+.++...+++.+..++..+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777766677888888999999999999999999999999999999999998888888887777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCC
Q 006496 302 GICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKI 381 (643)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 381 (643)
........++..+...+++++|.+++..+.+++|.+.+++.+...+..|+..+...+..+..+..+.+|++++++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 87777888888888889999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC
Q 006496 382 DPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461 (643)
Q Consensus 382 ~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG 461 (643)
...... .....++|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.|||
T Consensus 316 ~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 316 EDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred cCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 221111 2233467999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 462 RDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 462 ~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
+|+++++.++||++|++|||||+||+|||+|||++|. ++++|||+++||+.++++|||+++|+||||.|||+|.+||||
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 9999999999999999999999999999999999995 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhH
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~e 621 (643)
||||||||||++|||||||||||||+||++||+.|++++.+..++||+|+||||++++++||+|+|||+|+|+|+|+|+|
T Consensus 470 QrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhcCCCcHHHHHHHhhcC
Q 006496 622 LLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 622 Ll~~~~~g~y~~l~~~q~~ 640 (643)
|++ ++|.|++||+.|..
T Consensus 550 Ll~--~~g~y~~l~~~~~~ 566 (567)
T COG1132 550 LLA--KGGLYARLYQAQGG 566 (567)
T ss_pred HHH--cCCHHHHHHHHhhc
Confidence 999 69999999998864
No 7
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.9e-98 Score=901.79 Aligned_cols=573 Identities=29% Similarity=0.500 Sum_probs=491.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+.++++..+++++.++++++++++.+++.+++|++++.+++.++... ........|++++++++++..++.+++.|+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~ 889 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYY 889 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777888888888999999999999999998765321 111223346666777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
..++++++..++|.++|++++++|++||++.++++|++++|+++|++.+++.+...+..++..++.++++++++++++|.
T Consensus 890 ~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~ 969 (1466)
T PTZ00265 890 NNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPI 969 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998656899999999999999999999888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHchHHHHHHhccHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSM-SKK-----------------VIKAQDESSKLAAEAVSNLRTINAFSSQERIQK 281 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~ 281 (643)
++++++++.+++ ...+.+..+.. .++ ..+..++....+.|+++|+++||+|+.|+.+.+
T Consensus 970 l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 970 VAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 877765443332 22222222211 111 123355677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 282 MLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDI 361 (643)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (643)
+|.+..+...+...+..++.++...+..++..++.++++|+|++++..|.+++|.+++++.++.....++..+..++..+
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888899999999999999999999988777666666788899999999
Q ss_pred HHHHHHHHHHHHHHccCcCCCCCCCCCCC---CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCC
Q 006496 362 AKGSDAVASVFAVLDRHTKIDPDDLNGYQ---PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSG 438 (643)
Q Consensus 362 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~---~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsG 438 (643)
..+..+.+|++++++.+++.+........ ++...|.|+|+||+|+||++++.++|+|+||+|+|||+|||||+||||
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsG 1206 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSG 1206 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCC
Confidence 99999999999999876543211111111 223457899999999998765567999999999999999999999999
Q ss_pred HHHHHHHHhccCCC------------------------------------------------------CCcEEEECCeeC
Q 006496 439 KSTIIGLIERFYDP------------------------------------------------------LKGVVKIDGRDI 464 (643)
Q Consensus 439 KSTL~~lL~gl~~~------------------------------------------------------~~G~I~idG~di 464 (643)
||||+++|+|+|+| ++|+|+|||+|+
T Consensus 1207 KSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di 1286 (1466)
T PTZ00265 1207 KSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDI 1286 (1466)
T ss_pred HHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEH
Confidence 99999999999999 699999999999
Q ss_pred CCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 465 RSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 465 ~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
+++++++||++|+||||||+||+|||||||+||. +++++|++++||+.|++++||.+||+||||.|||+|.+|||||||
T Consensus 1287 ~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HhCCHHHHHhhccEeCCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999994 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhhcCEEEEEeC----CEEE-EEc
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQNCDIIAVLEQ----GRVV-EEG 617 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~vl~~----G~Iv-e~G 617 (643)
||||||||+|+|+||||||||||||+++|+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999884 68999999999999999999999999 9955 999
Q ss_pred ChhHHhhcCCCcHHHHHHHhhc
Q 006496 618 SHQSLLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 618 ~~~eLl~~~~~g~y~~l~~~q~ 639 (643)
+|+||+++ ++|.|++||+.|.
T Consensus 1446 th~eLl~~-~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1446 THEELLSV-QDGVYKKYVKLAK 1466 (1466)
T ss_pred CHHHHHhc-CCChHHHHHhhcC
Confidence 99999973 4899999998763
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-96 Score=847.99 Aligned_cols=567 Identities=35% Similarity=0.509 Sum_probs=501.4
Q ss_pred ChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006496 57 TAPSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQ 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (643)
..+.+++++++.++.|+.+..+.++.++..++....|++++.++|........ ......+.+++++.++..++.+++
T Consensus 145 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888889999999999999876532111 112222333444555677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 137 QYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLII 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (643)
.+++.+++.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++++++++.+
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998 6889999999999999999999888888888888888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 006496 217 SWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVR 296 (643)
Q Consensus 217 ~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|.++++.++..|+.+++...+.++.++..++.++..++....+.|+++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888899999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 297 QSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
..........+..++..+..++++++|++++..|.+++|.+++++.+...+..++..+...+..+.++..+.+|+.++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77666666666666666677777888999999999999999999999999999999999999999999999999999998
Q ss_pred cCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcE
Q 006496 377 RHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~ 456 (643)
.+++.++.. ...+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 765432211 112223456799999999998755567999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCC
Q 006496 457 VKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536 (643)
Q Consensus 457 I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~ 536 (643)
|.+||+|+++++.+++|++|+||||||++|+|||||||++|. ++++||++++|++.+++++||+++|+||||.+||+|.
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 999999999999999999999999999999999999999994 5789999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEE
Q 006496 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~ 616 (643)
+||||||||||||||++++|+||||||||||||+++|+.+++ ....+++|+|+||||+++++.||+|+||++|+|+|.
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998 334578999999999999999999999999999999
Q ss_pred cChhHHhhcCCCcHHHHHH
Q 006496 617 GSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l~ 635 (643)
|+|+||++ ++|.|++|+
T Consensus 695 Gt~~eL~~--~~~~y~~lv 711 (711)
T TIGR00958 695 GTHKQLME--DQGCYKHLV 711 (711)
T ss_pred eCHHHHHh--CCCchHhcC
Confidence 99999998 678999874
No 9
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-98 Score=866.53 Aligned_cols=532 Identities=24% Similarity=0.352 Sum_probs=443.4
Q ss_pred HHHHHHHhcccChhhHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCc
Q 006496 96 MGSMISVYFLKDHDEIK---EKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDEN 172 (643)
Q Consensus 96 ~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~ 172 (643)
....|..+|........ .....|+++|.+++++..++..++.+.+...+.+.+..+|+.++++++++|++||| .+
T Consensus 835 ~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tT 912 (1381)
T KOG0054|consen 835 ASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TT 912 (1381)
T ss_pred HHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CC
Confidence 34555556654321111 24567889999999999999999999999999999999999999999999999999 79
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 006496 173 SSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKK--VI 250 (643)
Q Consensus 173 ~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~--~~ 250 (643)
|+|+|+|||++|++.+|+.+...+..+++.++.++..++++.+..|+ ++++++|+.++++++...+.. .+++ ++
T Consensus 913 P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~---fli~~~pl~v~~~~~~~~Y~~-tsReLkRL 988 (1381)
T KOG0054|consen 913 PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW---FLIAIIPLGVIYYFVQRYYLA-TSRELKRL 988 (1381)
T ss_pred CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH---HHHHHHHHHHHHHHHHHHHHH-HhHHHHHh
Confidence 99999999999999999999999999999998888888887777664 444455666555444444433 3333 33
Q ss_pred --HHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 251 --KAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVG 328 (643)
Q Consensus 251 --~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 328 (643)
..+++...++.|+++|+.|||+|+.+++|.+++....+...+..+-..-..-++..-..++..+.++.+..+. ...
T Consensus 989 esitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~--vl~ 1066 (1381)
T KOG0054|consen 989 ESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFA--VLL 1066 (1381)
T ss_pred hhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHc
Confidence 3677788999999999999999999999999999988887665443322222222222333333222222222 112
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCC--CCCCCCccccEEEEeEEE
Q 006496 329 RGY-IDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLN--GYQPEKIIGHIELEDVHF 405 (643)
Q Consensus 329 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~--~~~~~~~~~~I~~~nvsf 405 (643)
.+. +++|.++.++++.+.+...++.+.+....++..+.+++|+.++.+.++|.+...+. ++...+.+|+|+|+|++.
T Consensus 1067 ~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~ 1146 (1381)
T KOG0054|consen 1067 PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSL 1146 (1381)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEE
Confidence 222 67899999999999999999999999999999999999999998865541111111 122233579999999999
Q ss_pred ECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCC
Q 006496 406 AYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPAL 485 (643)
Q Consensus 406 ~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~l 485 (643)
+|.++ .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||++++++||||+|
T Consensus 1147 RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1147 RYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99754 45799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccC
Q 006496 486 FAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEAT 565 (643)
Q Consensus 486 f~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~T 565 (643)
|+||+|.||.+ .++++|+++|+|||+|+|.++|+++|+|||++|.|+|.|+|.||||.+||||||+|+++||+|||||
T Consensus 1226 FsGTvR~NLDP--f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1226 FSGTVRFNLDP--FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ecCccccccCc--ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 99999999964 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhc
Q 006496 566 SALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 566 SaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~ 639 (643)
+++|++|+..||++|++.|++||||+||||++|+.+||||+|||+|+|+|+|+|++|+++ +++.|++++.+..
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~-~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD-KDSLFSSLLKEAA 1376 (1381)
T ss_pred ccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC-CcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 7899987776543
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.9e-95 Score=838.17 Aligned_cols=562 Identities=26% Similarity=0.364 Sum_probs=495.0
Q ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLAL-NIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 61 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+++++. .++.++.+....+++++..++....|++++.++|....... ......++++++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 34556666667777777778888889999999987653211 1122334445555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
...++.++..++|.++|+|++++|++||+ +.++|++++|++ |++.+++.+.......+..+..++++++++++++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 788999999996 899999888776666666666667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
+++++++++|+.+++..+..+..++..++..+..++..+.+.|+++|+++||+++.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888899999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
...+...+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88887777778888888888999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.+... ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred ccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 422111 1122234679999999999754 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||+|+++++++++|++|+||||||++|+|||||||+++. + ++||++++|++.|+++++|+++|+||||.+||+|.+||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LS 590 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLS 590 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999994 4 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|||||||+||||++++|+|||||||||+||+++|+.+++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHhh
Q 006496 620 QSLLAKGPAGAYYSLVSLQ 638 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~q 638 (643)
+||++ ++|.|++|++.|
T Consensus 669 ~~Ll~--~~~~y~~l~~~q 685 (686)
T TIGR03797 669 DELMA--REGLFAQLARRQ 685 (686)
T ss_pred HHHHh--CCcHHHHHHHhc
Confidence 99998 689999999876
No 11
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-95 Score=767.38 Aligned_cols=552 Identities=25% Similarity=0.359 Sum_probs=492.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 78 GCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLS 157 (643)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 157 (643)
..++..+.++....+.+++...++.++.... ......+++.++++.++..++.+.+.....+.+.++...+|..+++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667777777777665431 2234455666777778889999999999999999999999999999
Q ss_pred HHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006496 158 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYG 237 (643)
Q Consensus 158 ~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~ 237 (643)
|+.++++.+-. ..++|++.+.++..++.++.++..+++.+..+.+...+.++.+++++|..++++++++|++.+++++
T Consensus 82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 238 KEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVA 317 (643)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (643)
.....+...++++.....+..++.+.++|+.|+|+|+..+...+++.+..++.++..++.-+.......+..+++++.++
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877777777788888888877
Q ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCccc
Q 006496 318 LAFWYGGRLVGR-GYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIG 396 (643)
Q Consensus 318 ~~~~~g~~lv~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (643)
++..+.+..... |.++.+..+.++.+.--++.|+..+++.++.-..+.++.+.++.+++.+.+..+..+..........
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 666555544445 8999988888888888999999999999999999999999999998876543222211111111233
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
+|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 466669999999763 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 477 ALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
+||||+|+||+|||||||+++. ++.+||++++|++.+++.+|++. |+|+||.|||+|.+|||||+||++||||+++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeCCCCccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999994 67999999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHH
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~ 636 (643)
+++|||||||+||.|||++|++.|.++.+++|||+||||++.+++||+|+|||+|+++|.|+|++|.+ ++|.|++|+.
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~--~~~~y~~l~~ 553 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE--KQGLYANLLK 553 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh--cCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred hhcC
Q 006496 637 LQTT 640 (643)
Q Consensus 637 ~q~~ 640 (643)
.|..
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 8875
No 12
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.4e-95 Score=837.90 Aligned_cols=567 Identities=24% Similarity=0.341 Sum_probs=497.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 59 PSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 138 (643)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (643)
..+++++.+.+++++.+....+++++..++....|++++.++|....... ......++++++++.++..++.+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIF 218 (708)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777777788888889999999987653321 112223334444555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006496 139 YFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218 (643)
Q Consensus 139 ~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (643)
+..+++.++..++|.++|++++++|++||+ +.++|++++|++ |.+.+.+++.......+..+..++++++++++++|
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (708)
T TIGR01193 219 LLNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM 295 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 689999999997 89999988876666666666677777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQS 298 (643)
Q Consensus 219 ~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 298 (643)
.+++++++++|+++++.+++.+..++..++..+..++..+.+.|+++|+++||+|++|+.+.++|.+...+..+...+..
T Consensus 296 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 375 (708)
T TIGR01193 296 LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQ 375 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989988888888888888889999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 006496 299 WIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRH 378 (643)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 378 (643)
+.......+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 455 (708)
T TIGR01193 376 KADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVD 455 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777777788889999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE
Q 006496 379 TKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 458 (643)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~ 458 (643)
++.+..... ...+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 456 ~e~~~~~~~-~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 456 SEFINKKKR-TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred Ccccccccc-cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 443211110 111233568999999999974 34699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 459 IDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 459 idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+||+|+++++++++|++|+||||||+||+|||||||+++.+++++||++++|++.++++++|+++|+||||.|||+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999843568999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
||||||||+||||++++|+|||||||||+||+++|+.+++.|++. +++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred hhHHhhcCCCcHHHHHHHh
Q 006496 619 HQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 619 ~~eLl~~~~~g~y~~l~~~ 637 (643)
|+||++ ++|.|++||+.
T Consensus 692 ~~~L~~--~~~~y~~l~~~ 708 (708)
T TIGR01193 692 HDELLD--RNGFYASLIHN 708 (708)
T ss_pred HHHHHh--cCCcHHHHhhC
Confidence 999998 68999999863
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.7e-95 Score=839.37 Aligned_cols=564 Identities=26% Similarity=0.349 Sum_probs=496.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+++++...+++++.+....+++++..++....|++++.++|....... ......++++++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666667777777777778889999999987653221 1112233444555566677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
...++.++..++|.++|++++++|++||+ +.++|++++|++.| +.+++++...+...+..+..+++.++++++++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 78999999999888 6799888777777778888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
++++.++.+|+.+++.++..+...+..++..+..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888889999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
...+...+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88887788888888888888999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCCCC---C-CCCC-CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC
Q 006496 380 KIDPDDL---N-GYQP-EKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK 454 (643)
Q Consensus 380 ~~~~~~~---~-~~~~-~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~ 454 (643)
+...... . ...+ +...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4321110 0 0111 2235689999999999854 3579999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCC
Q 006496 455 GVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534 (643)
Q Consensus 455 G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~ 534 (643)
|+|.+||+|+++++.+++|++|+||||||++|+|||||||+++. ++++++++++|++.++++++|+++|+||||.|||+
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 99999999999999999999999999999999999999999984 57999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEE
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVV 614 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Iv 614 (643)
|.+||||||||||||||++++|+||||||||||||++||+.|.+.|++ .++|+|+||||+++++.||+|++|++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999999999999999999999999
Q ss_pred EEcChhHHhhcCCCcHHHHHH
Q 006496 615 EEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 615 e~G~~~eLl~~~~~g~y~~l~ 635 (643)
|.|+|+||++ ++|.|++|+
T Consensus 691 ~~G~~~~Ll~--~~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWA--VGGAYARLI 709 (710)
T ss_pred EecCHHHHHH--cCCcHHHHh
Confidence 9999999998 789999998
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.3e-94 Score=813.20 Aligned_cols=569 Identities=31% Similarity=0.492 Sum_probs=495.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (643)
+++++.+.++.++.++...++.++..++....|++++.+++..+..... ....++.+.+++++++..++.+++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 89 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCI 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555565556666666666666777778777765432111 1112223333345666777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006496 141 AYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRL 220 (643)
Q Consensus 141 ~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (643)
.+.+.++...+|..+|+++++.|+++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 90 SWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999997 78899999999999999999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 221 ALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWI 300 (643)
Q Consensus 221 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++|+.+++.....+.+++..++..+..++....+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888878888888888888999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Q 006496 301 AGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTK 380 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 380 (643)
..+...+..++..+...+++++|++.+..|.+++|.+++++.+...+..|+..+...+..++.+..+..|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88777778888777778888889999999999999999999999999999999999999999999999999998875433
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC
Q 006496 381 IDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 460 (643)
Q Consensus 381 ~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id 460 (643)
.+... ...+...+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+|
T Consensus 328 ~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 328 KDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 21111 1112223579999999999754 4579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 461 GRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 461 G~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
|+|+++++.+++|++|+||||||++|+|||||||++|.+++++|++++++++.+++++++++||+||||.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999985445899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChh
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~ 620 (643)
||||||+||||++++|+||||||||||||++||+.+.+.|++..+++|+|+||||++.++.||+|++|++|+|+|.|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHhhcC
Q 006496 621 SLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 621 eLl~~~~~g~y~~l~~~q~~ 640 (643)
+|++ +++.|++|++.|..
T Consensus 564 ~l~~--~~~~y~~l~~~~~~ 581 (582)
T PRK11176 564 ELLA--QNGVYAQLHKMQFG 581 (582)
T ss_pred HHHh--CCChHHHHHHHHhc
Confidence 9998 67999999997753
No 15
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.9e-94 Score=805.91 Aligned_cols=565 Identities=23% Similarity=0.337 Sum_probs=487.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChh-hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 63 RLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHD-EIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 141 (643)
Q Consensus 63 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 141 (643)
+++++.+++++.+.++.++.++..++....|++++.+++........ .......+.+.++++++++..++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777777788888888888888888889988865322110 00001111223344556677888888989889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006496 142 YMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLA 221 (643)
Q Consensus 142 ~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (643)
..+.++..++|.++|+|++++|+.+|+ +.++|++++|+++|++.+++++...+..++..++.++++++++++++|.++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 688999999999999999999988888888888888888899999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 222 LVIIAVQPLVIV-CLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWI 300 (643)
Q Consensus 222 lv~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
+++++++|++++ +.++..+..++..++..+..++....+.|.++|+++||+|+.|+++.+++.+..++..+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777776654 3456667777777888899999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 301 AGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVS-TGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
.+....+..++..+..++++++|++++ .|.++.|.+++++.+... ...++.++...+..+.++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888777777777777777888888874 788999998887766533 456788888899999999999999999998765
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.+.... ..+....+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 4221111 1111234679999999999754 346999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||+|+++++.+++|++|+||||||++|+|||+|||+++. ++++||+++++++.+++++|+++ |+||||.|||+|.+||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999984 57899999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
||||||||||||++++|+|||||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHh
Q 006496 620 QSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~ 637 (643)
+||++ ++|.|++||+.
T Consensus 558 ~~l~~--~~g~y~~l~~~ 573 (574)
T PRK11160 558 QELLA--QQGRYYQLKQR 573 (574)
T ss_pred HHHHh--cCcHHHHHHhh
Confidence 99998 78999999974
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.6e-93 Score=823.15 Aligned_cols=560 Identities=24% Similarity=0.389 Sum_probs=492.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
..++++...+++++.+....+++++..++....|++++.++|....... ......++++++++.++..++.+++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYF 210 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777777888888889999999987553211 1112223334444556677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
..+.+.++..++|.++|+|++++|++| + +.++|++++|+ +|++.+++++.......+..+..++++++++++++|.
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 211 LDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999997 4 57899999999 8999999988776666666666677777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
++++.++++|+.+++.+...+..++..++..+..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998898888888888888888889999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
.......+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888878888887888888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.+... ....++...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 422111 111112234679999999999754 356999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||+|+++++++++|++|+||||||++|+|||||||+++. +++++|++++|++.++++++|++||+||||.+||+|.+||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 999999999999999999999999999999999999994 5699999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|||||||+||||++++|+|+|||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhhcCCCc
Q 006496 620 QSLLAKGPAG 629 (643)
Q Consensus 620 ~eLl~~~~~g 629 (643)
+||+++.+.|
T Consensus 684 ~eLl~~~~~~ 693 (694)
T TIGR03375 684 DQVLEALRKG 693 (694)
T ss_pred HHHHHHhhcC
Confidence 9999754443
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-93 Score=806.98 Aligned_cols=571 Identities=26% Similarity=0.396 Sum_probs=483.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 58 APSFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQ 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 137 (643)
++.+++++.+.++.++.+++..++.++..++.+..|++++.+++..+....... .....++++++++.++..++.+++.
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 8 WPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566667777777788888888899999999987553221111 1111223334444556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006496 138 YYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIIS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (643)
++....+.+...++|.++|++++++|+++|+ +.++|++++|+++|++.+++.+...+..++..+..+++.++++++++
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLD 164 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999998 78899999999999999999988888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 006496 218 WRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQ 297 (643)
Q Consensus 218 ~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|.+++++++++|++++...+..+..++..++..+..++....+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (592)
T PRK10790 165 WRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQT 244 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887887777777777777777777888889999999999999999999999999999999888877776666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 298 SWIAGIC-LAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
.+..... ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+...+..++++..+.+|+.++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 323 (592)
T PRK10790 245 LRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMD 323 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554432 233333333333333333333 57899999999999999999999999999999999999999999999987
Q ss_pred cCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcE
Q 006496 377 RHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGV 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~ 456 (643)
.+++.. .. . . .+...+.|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~~-~~-~-~-~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 324 GPRQQY-GN-D-D-RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred CCCccC-CC-C-c-cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 543311 11 1 1 11223579999999999743 46999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCC
Q 006496 457 VKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536 (643)
Q Consensus 457 I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~ 536 (643)
|.+||.|+++++++++|++|+||||||++|+|||||||++|. +++|++++++++.++++++|++||+||||.+||+|.
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999994 589999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEE
Q 006496 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~ 616 (643)
+||||||||||||||++++|+|||||||||+||++||+.|++.|++..++||+|+||||+++++.||+|++|++|+|+|.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cChhHHhhcCCCcHHHHHHHhhcCCC
Q 006496 617 GSHQSLLAKGPAGAYYSLVSLQTTPQ 642 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l~~~q~~~~ 642 (643)
|+|+||++ +++.|+++++.|....
T Consensus 556 G~~~~L~~--~~~~y~~l~~~~~~~~ 579 (592)
T PRK10790 556 GTHQQLLA--AQGRYWQMYQLQLAGE 579 (592)
T ss_pred cCHHHHHh--CCCHHHHHHHHHhhhc
Confidence 99999998 6799999999886554
No 18
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.1e-93 Score=872.43 Aligned_cols=513 Identities=20% Similarity=0.285 Sum_probs=434.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHH
Q 006496 116 RFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR 195 (643)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~ 195 (643)
..|+++|++++++..++.++..++....+.+...++|.+++++++++|++||+ ++++|+++||+++|++.+++.+...
T Consensus 1005 ~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~ 1082 (1522)
T TIGR00957 1005 SLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPV 1082 (1522)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888899999999999999999999999998 7899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 006496 196 VALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSS 275 (643)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~ 275 (643)
+..++..++.+++.++++++.+|.+++++++++++++++...+.+..++..+...+..++..+++.|+++|+++||+|++
T Consensus 1083 ~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~ 1162 (1522)
T TIGR00957 1083 IKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEE 1162 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhh
Confidence 88888888888888888888777655544443333333333333333444444566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006496 276 QERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLV-GRGYIDGKSLFEIFLILVSTGKVIADA 354 (643)
Q Consensus 276 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 354 (643)
|+++.+++.+..+...+..........++.....++..+ ++++.+...+ ..+.+++|.+++++.+...+..++..+
T Consensus 1163 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l 1239 (1522)
T TIGR00957 1163 QERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWL 1239 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888887776554444443433333333222 2222333333 367899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCC--CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEE
Q 006496 355 GTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPE--KIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALV 432 (643)
Q Consensus 355 ~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~--~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIv 432 (643)
...+..++.+..+++|+.++++.+++.....+....++ +..|.|+|+||+|+|+++ ..++|+|+||+|+|||+||||
T Consensus 1240 ~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIV 1318 (1522)
T TIGR00957 1240 VRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIV 1318 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEE
Confidence 99999999999999999999876544221111111111 245789999999999754 246999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHH
Q 006496 433 GQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGK 512 (643)
Q Consensus 433 G~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~ 512 (643)
||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+|||||||++. ++++||++|+|++
T Consensus 1319 GrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~ 1396 (1522)
T TIGR00957 1319 GRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALE 1396 (1522)
T ss_pred CCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999854 2699999999999
Q ss_pred HhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q 006496 513 AANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVV 592 (643)
Q Consensus 513 ~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~I 592 (643)
.|+++++|+++|+||||+|||+|.+||||||||||||||++|+|+|||||||||+||++||+.|++.|++.+++||+|+|
T Consensus 1397 ~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~I 1476 (1522)
T TIGR00957 1397 LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI 1476 (1522)
T ss_pred HcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhh
Q 006496 593 AHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638 (643)
Q Consensus 593 tHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q 638 (643)
|||++++.+||||+|||+|+|+|+|+|+||++ ++|.|++|+++.
T Consensus 1477 AHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~--~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1477 AHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ--QRGIFYSMAKDA 1520 (1522)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEECCHHHHHh--CCCHHHHHHHHc
Confidence 99999999999999999999999999999998 579999999873
No 19
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.6e-92 Score=809.10 Aligned_cols=568 Identities=26% Similarity=0.401 Sum_probs=499.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+.+++...+++++.+....+++++..++....|++++.++|....... ......++++++++.++..++.+++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 202 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYL 202 (694)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666667777777777778889999999987653211 1122334445555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
...++.++..++|.++|++++++|++||+ +.++|++++|+ +|++.+++++.......+..+..+++.++++++++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 203 FAHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 78999999999 7999999988666666565555566667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
+++++++++|+++++.++..+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..+
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888877888888899999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
.......+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.+.. .....+...+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 440 e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 440 EPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred CccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 42211 111112234679999999999754 346899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||+|+++++.+++|++++||||||++|+|||||||+++. +++++++++++++.++++++|+++|+||||.+||+|.+||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 999999999999999999999999999999999999984 5789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHhhc
Q 006496 620 QSLLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~q~ 639 (643)
+||++ ++|.|++|++.|.
T Consensus 676 ~~l~~--~~~~y~~l~~~~~ 693 (694)
T TIGR01846 676 EELLA--LQGLYARLWQQQS 693 (694)
T ss_pred HHHHH--cCChHHHHHHhhc
Confidence 99998 6799999998764
No 20
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-92 Score=863.77 Aligned_cols=513 Identities=24% Similarity=0.345 Sum_probs=416.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHH
Q 006496 116 RFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR 195 (643)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~ 195 (643)
..|+++|++++++..++.+++.+++...+.+...++|.+++++++++|++||+ ++++|+++||+++|++.++..+...
T Consensus 953 ~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~ 1030 (1622)
T PLN03130 953 LFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVF 1030 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888899999888999999999999999999999999998 7899999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 006496 196 VALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYG---KEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINA 272 (643)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~ 272 (643)
+..++..++.+++.++++++++|...+ +++|+.+++... +.+..++..+...+..++..+++.|+++|+++||+
T Consensus 1031 ~~~~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIra 1107 (1622)
T PLN03130 1031 VNMFLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA 1107 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHh
Confidence 888888888888888877777763332 223333322222 22222333334456678888999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-----CHHHHHHHHHHHHH
Q 006496 273 FSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGY-I-----DGKSLFEIFLILVS 346 (643)
Q Consensus 273 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~-~-----~~g~~~~~~~~~~~ 346 (643)
|++++++.+++.+..+...+..........++.....++..+ ++++.+...+..+. . ..+.++.++.+...
T Consensus 1108 f~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~---~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~ 1184 (1622)
T PLN03130 1108 YKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGL---MIWLTASFAVMQNGRAENQAAFASTMGLLLSYALN 1184 (1622)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcccccccchhhhHHHHHHHHHHHH
Confidence 999998888877766665444332221121221111121111 11112222233221 1 13455555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCC--CccccEEEEeEEEECCCCCCccceeeeeEEEe
Q 006496 347 TGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPE--KIIGHIELEDVHFAYPARPNVMIFKGFSINIE 424 (643)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~--~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~ 424 (643)
+..++..+...+..++....+++|+.++++.+++.+...+....++ +..|.|+|+||+|+|+++ .+++|+|+||+|+
T Consensus 1185 ~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~ 1263 (1622)
T PLN03130 1185 ITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEIS 1263 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEc
Confidence 7788888888899999999999999999876554321111111111 235789999999999643 3469999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCH
Q 006496 425 AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDE 504 (643)
Q Consensus 425 ~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~ 504 (643)
|||+||||||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+|||||||.++. +++|
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~td 1341 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHND 1341 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999883 5899
Q ss_pred HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 006496 505 SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM 584 (643)
Q Consensus 505 e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~ 584 (643)
|++|+||+.|++++||+++|+||||+|||+|.||||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhcC
Q 006496 585 VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 585 ~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
++||+|+||||++++++||||+|||+|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1422 ~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~-~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1422 KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN-EGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CCCHHHHHHHHcCh
Confidence 99999999999999999999999999999999999999984 47999999987653
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-91 Score=793.20 Aligned_cols=567 Identities=32% Similarity=0.516 Sum_probs=505.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 63 RLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAY 142 (643)
Q Consensus 63 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 142 (643)
+++...+..++.++++.++.++.+++.+..|++++.+++..+.... .....+++++++++.++..++.+++.++..+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777778888888888888888888888876543221 1122334445556667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006496 143 MGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLAL 222 (643)
Q Consensus 143 ~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 222 (643)
.+.++...+|..+|+++++.|.++|+ +.+.|++++|+++|++.+++.+...+..++..+..++++++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999997 6789999999999999999999888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 223 VIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAG 302 (643)
Q Consensus 223 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (643)
+.+++.|+.+++..+..+..++..++..+..++..+.+.|.++|+++||+++.++.+.+++++..++..+...+..+...
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998898888888888888888899999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCC
Q 006496 303 ICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKID 382 (643)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 382 (643)
....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCe
Q 006496 383 PDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR 462 (643)
Q Consensus 383 ~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~ 462 (643)
... ...+...+.|+++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|.+||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 111 1111234579999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 463 DIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 463 di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
|+++++.+++|++++||||+|++|+|||||||+++.++++++++++++++.|++++++.+||+|+||+|||+|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 99999999999999999999999999999999999533799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHH
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 622 (643)
|||||||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHhhcC
Q 006496 623 LAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 623 l~~~~~g~y~~l~~~q~~ 640 (643)
++ .++.|++++..|.+
T Consensus 555 ~~--~~~~~~~~~~~~~~ 570 (571)
T TIGR02203 555 LA--RNGLYAQLHNMQFR 570 (571)
T ss_pred HH--cCCHHHHHHHHhhc
Confidence 98 57899999987643
No 22
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-91 Score=855.44 Aligned_cols=513 Identities=23% Similarity=0.331 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHH
Q 006496 116 RFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR 195 (643)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~ 195 (643)
..|+++|++++++..++.+++.+++...+.+...++|.+++++++++|++||+ ++++|+++||+++|++.+++.+...
T Consensus 950 ~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~ 1027 (1495)
T PLN03232 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANL 1027 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHH
Confidence 45778888888888999999999989999999999999999999999999998 7899999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 006496 196 VALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGK---EVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINA 272 (643)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~ 272 (643)
+..++..+..+++++++++.+++...+ +++|+.+++.... .+..+...+...+..++..+++.|+++|+++||+
T Consensus 1028 ~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIra 1104 (1495)
T PLN03232 1028 MNMFMNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRA 1104 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhc
Confidence 888888777777777777666653322 2223333222221 2222334444566778889999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----C-HHHHHHHHHHHHH
Q 006496 273 FSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVG-RGYI----D-GKSLFEIFLILVS 346 (643)
Q Consensus 273 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~~~~----~-~g~~~~~~~~~~~ 346 (643)
|++++++.+++.+..+...+..........+.......+. .+++++.+...+. .+.+ . .+.+..++.+...
T Consensus 1105 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 1181 (1495)
T PLN03232 1105 YKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLG---GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLN 1181 (1495)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHH
Confidence 9999998888877766655544332222222211111111 1122222222332 2322 1 2233345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCC--CCccccEEEEeEEEECCCCCCccceeeeeEEEe
Q 006496 347 TGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQP--EKIIGHIELEDVHFAYPARPNVMIFKGFSINIE 424 (643)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~--~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~ 424 (643)
+..++..+...+..++.+..+.+|+.++++.+++.+...+....+ .+..|.|+|+||+|+|+++ .+++|+|+||+|+
T Consensus 1182 ~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~ 1260 (1495)
T PLN03232 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVS 1260 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEc
Confidence 777888889999999999999999999997665432111111111 1235789999999999643 3469999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCH
Q 006496 425 AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDE 504 (643)
Q Consensus 425 ~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~ 504 (643)
|||+||||||||||||||+++|+|+|+|++|+|.|||+|++++++++||++|++|||||+||+|||||||+++. +++|
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sd 1338 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHND 1338 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999883 6999
Q ss_pred HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 006496 505 SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM 584 (643)
Q Consensus 505 e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~ 584 (643)
||+++||+.|+++++|+++|+||||+|||+|.||||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+
T Consensus 1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1339 ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhcC
Q 006496 585 VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 585 ~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
++||+|+||||++++++||+|+|||+|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1419 ~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1419 KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTGP 1473 (1495)
T ss_pred CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999984 45799999987754
No 23
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.6e-90 Score=781.49 Aligned_cols=567 Identities=27% Similarity=0.404 Sum_probs=486.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (643)
.+++++.+.++.++.+.+..++.++..++....|++++.++|...... ....+.+++++++++..+..++..++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666777777777778888888888999999988654321 11222233333344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006496 140 FAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWR 219 (643)
Q Consensus 140 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (643)
..+...++..+++.++|++++++|+.+|+ +.++|++++|+++|++.+...+...+..++..++.+++.++++++++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777888999999999999997 6889999999999999999877777777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 220 LALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSW 299 (643)
Q Consensus 220 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
+++++++++|+.+++.....+..++..++..+..++....+.|.++|+++||.|+.++.+.+++.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777777777777888888899999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 006496 300 IAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT 379 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 379 (643)
...+...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+..+..+..++.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777777777777888889999999999999999999999999999999999999999999999999999887644
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 380 KIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+.+.. .....++...+.|+++||+|+||++ .++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.+
T Consensus 318 ~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 32111 1111112233579999999999743 35899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
||.|+++++.+++|++|+||||+|++|+|||||||+++. ++++|++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 999999999999999999999999999999999999994 5789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
||||||||||||++++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCcHHHHHHHhhcC
Q 006496 620 QSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l~~~q~~ 640 (643)
++|++ +++.|++|+..+..
T Consensus 554 ~~l~~--~~~~y~~l~~~~~~ 572 (588)
T PRK13657 554 DELVA--RGGRFAALLRAQGM 572 (588)
T ss_pred HHHHH--CCChHHHHHHHhhc
Confidence 99998 67999999986643
No 24
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.7e-91 Score=847.50 Aligned_cols=515 Identities=20% Similarity=0.273 Sum_probs=426.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHH
Q 006496 117 FYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRV 196 (643)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~ 196 (643)
.|+++|+++.++..+..+++.+.....+.+...++|.++|++++++|++||+ ++++|+++||+++|++.+++.+...+
T Consensus 999 ~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l 1076 (1560)
T PTZ00243 999 TYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSY 1076 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666666666666666666666677788899999999999999999998 78999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHh
Q 006496 197 ALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVC---LYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAF 273 (643)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~ 273 (643)
..++..++.+++.++++++.+|.+.+ +++|+.+++ ...+.+..+...+......++..+++.|+++|+++||+|
T Consensus 1077 ~~~~~~~~~~i~~li~~~~~~p~~~~---~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf 1153 (1560)
T PTZ00243 1077 LYLLQCLFSICSSILVTSASQPFVLV---ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAY 1153 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhC
Confidence 88888888888888888888774332 233333222 222333334444455678888999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 006496 274 SSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGG--RLVGRGYIDGKSLFEIFLILVSTGKVI 351 (643)
Q Consensus 274 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~lv~~~~~~~g~~~~~~~~~~~~~~~~ 351 (643)
++++.+.+++.+..+...+..+.......+......++..++.+++.+++. .+...+.+++|.++.++.+...+..++
T Consensus 1154 ~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1154 GKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877766655444444444444444443333333332 233445578888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCC-------------------------CCCC----CCCCccccEEEEe
Q 006496 352 ADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDD-------------------------LNGY----QPEKIIGHIELED 402 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~~~I~~~n 402 (643)
..+...+..++.+..+.+|+.++++..++++... +... +++...|.|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 9999999999999999999999986433221000 0000 0111347899999
Q ss_pred EEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecC
Q 006496 403 VHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQE 482 (643)
Q Consensus 403 vsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~ 482 (643)
|+|+|+++ .+++|+||||+|+|||+||||||||||||||+++|+|+|+|++|+|.|||+|++++++++||++|+|||||
T Consensus 1314 Vsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd 1392 (1560)
T PTZ00243 1314 VQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392 (1560)
T ss_pred EEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCC
Confidence 99999754 34699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC-CCEEEe
Q 006496 483 PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN-PAVLLL 561 (643)
Q Consensus 483 p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~-~~IliL 561 (643)
|+||+|||||||+++ ++++|+++|+||++|+++++|.++|+||||.|||+|.||||||||||||||||+++ |+||||
T Consensus 1393 p~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlL 1470 (1560)
T PTZ00243 1393 PVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILM 1470 (1560)
T ss_pred CccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999876 36999999999999999999999999999999999999999999999999999996 899999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhcC
Q 006496 562 DEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 562 DE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
|||||+||++||+.|++.|++.+++||+|+||||++++.+||+|+|||+|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1471 DEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1471 DEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEALGR 1548 (1560)
T ss_pred eCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999999999974 58999999987643
No 25
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-90 Score=775.87 Aligned_cols=524 Identities=22% Similarity=0.272 Sum_probs=447.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 64 LLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYM 143 (643)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 143 (643)
++++.+++++.+..+.++.++..++....|++++.+++....... ......++..++++.++..++.++..++....
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666667777777778888889999998886542211 00001111112234456677788888888889
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006496 144 GEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALV 223 (643)
Q Consensus 144 ~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv 223 (643)
+.++..++|.++|++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..+..++++++++++++|.++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999998 78899999999999999999988888888888888888888999999999998
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 224 IIAVQPLVIVCL-YGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAG 302 (643)
Q Consensus 224 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (643)
+++.+|+++++. .+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+..+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887767665544 3344444555666778889999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCC
Q 006496 303 ICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKID 382 (643)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 382 (643)
....+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 87777777777777888889999999999999999999999889999999999999999999999999999997655422
Q ss_pred CCCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC
Q 006496 383 PDDLN-GYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461 (643)
Q Consensus 383 ~~~~~-~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG 461 (643)
..... .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 11111 11111124579999999999754 3599999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 462 RDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 462 ~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
+|++++ .+++|++|+||||||+||+|||||||++|. ++++||++++|++.|++++||++||+||||+|||+|.+||||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 999999 999999999999999999999999999994 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRL 596 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl 596 (643)
||||||||||++++|+||||||||||||++||+.|++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999998999999999996
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1e-89 Score=777.61 Aligned_cols=570 Identities=32% Similarity=0.515 Sum_probs=491.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 62 RRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 141 (643)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 141 (643)
+.++.+.++.++.+.+..++.++..++....|++++.+++..+.... ......++.+++++.++..+..+++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666667777777888888889999999986443221 111222333344445556667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006496 142 YMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLA 221 (643)
Q Consensus 142 ~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (643)
.++.++...+|..++++++++|.++|+ +.++|++++|+++|++.+++++...+..++..+..++++++++++++|.++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999997 678999999999999999998887777778888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 222 LVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIA 301 (643)
Q Consensus 222 lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (643)
+++++..|+.+++..+..+..++..++..+..++..+.+.|.++|+++||+++.|+.+.+++.+..++..+...+.....
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877777778888888888888999999999999999999999999999999999999988877777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCC
Q 006496 302 GICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKI 381 (643)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 381 (643)
.....+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 66666665666666667778899999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC
Q 006496 382 DPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 461 (643)
Q Consensus 382 ~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG 461 (643)
+........+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|.+||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 11111111111123579999999999864335799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 462 RDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 462 ~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
.|+++++.+++|++++|+||+|++|+|||||||+++. ++.++++++++++.++++++++++|+|+||++||+|.+||||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 9999999999999999999999999999999999984 568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhH
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~e 621 (643)
|||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HhhcCCCcHHHHHHHhhc
Q 006496 622 LLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 622 Ll~~~~~g~y~~l~~~q~ 639 (643)
+++ +++.|++|++.|.
T Consensus 561 l~~--~~~~~~~l~~~~~ 576 (576)
T TIGR02204 561 LIA--KGGLYARLARLQF 576 (576)
T ss_pred HHH--cCChHHHHHhhcC
Confidence 998 7899999998763
No 27
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-90 Score=718.95 Aligned_cols=556 Identities=22% Similarity=0.326 Sum_probs=460.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 71 EWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKR 150 (643)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
.|..+.++++++++..+.....-.+.|+++...-..... ...+...-....=++++...+..|+..+..+.+..++...
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~-~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~ 92 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA-YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSA 92 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 566666777766665554444444445555432111110 0001111112223466778888899999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Q 006496 151 IRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQP- 229 (643)
Q Consensus 151 lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~- 229 (643)
+|.++|+++...++.-.. +..+||++||+..|++.+|+.+-..+..++..+....+..+.+.+++|++++.+..++.
T Consensus 93 lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 93 LRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999988887665 68899999999999999999998887777777777766666667888888776665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 230 LVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSR 309 (643)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (643)
+++++++.+.++-++..+...+.+..+.+.+.|.+.|..+.+.||.++.+.+.+......+.+...+.+.+..+.+.+..
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888999999999999999999999999999999999999999999988899999998888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCcCCCCCCCC
Q 006496 310 ALVSCVVA-LAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAG-TMTTDIAKGSDAVASVFAVLDRHTKIDPDDLN 387 (643)
Q Consensus 310 ~~~~~~~~-~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 387 (643)
++..+..+ .++|.+ -.+..|..+......++..+.....++..+. ..+..+.+...++.|+.++.+++++...+.+
T Consensus 251 l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~- 328 (573)
T COG4987 251 LIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE- 328 (573)
T ss_pred HHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc-
Confidence 88777766 444444 3455666664344444444445555666666 6678889999999999999988776433311
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC
Q 006496 388 GYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH 467 (643)
Q Consensus 388 ~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~ 467 (643)
..+...+ .++++||||+||++ +.++|+|+||++++||||||+|+||||||||+++|.|-|+|++|+|.++|.+++.+
T Consensus 329 -~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 329 -QTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred -ccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 1111112 69999999999976 55799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 468 HLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 468 ~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
+.+++|+.+++++|.+++|+||+||||.++ ++++|||++|+++++++|++++++.|+||+|++||+|.+||||||||+|
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLA-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 999999999999999999999999999999 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
|||++++|+|++||||||.+||++||+.|.+.|.+..++||+|+||||+..++.||||+|||+|+|+|+|+|++|++ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~--~ 562 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA--N 562 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CcHHHHHHHh
Q 006496 628 AGAYYSLVSL 637 (643)
Q Consensus 628 ~g~y~~l~~~ 637 (643)
+|.|++|++.
T Consensus 563 ~g~~~~l~q~ 572 (573)
T COG4987 563 NGRYKRLYQL 572 (573)
T ss_pred ccHHHHHhcc
Confidence 8999999874
No 28
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-89 Score=770.30 Aligned_cols=567 Identities=26% Similarity=0.379 Sum_probs=489.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLALNIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (643)
+++++++.+++++.+..+.++.++..++.+..|++++.++|....... ...+++.+++++++..+..++..++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777788888888888889999999999987543211 11122222233344455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006496 141 AYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRL 220 (643)
Q Consensus 141 ~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (643)
..+..++..++|.++|++++++|++||+ ++++|++++|+++|++.+.+.+...+..++..++.+++++++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888999999999999998 67899999999999999998888777777777777777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 221 ALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWI 300 (643)
Q Consensus 221 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++|+++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888887888777777788888999999999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Q 006496 301 AGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTK 380 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 380 (643)
..+...+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77776666677777777888899999999999999999999999999999999999999999999999999998876543
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC
Q 006496 381 IDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 460 (643)
Q Consensus 381 ~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id 460 (643)
.+... .....+...+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|
T Consensus 319 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 21111 111111234579999999999753 358999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 461 GRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 461 G~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
|.|+.+++.+++|++++||||+|++|++|++|||+++. +++++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999984 56899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChh
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~ 620 (643)
||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHhhcCC
Q 006496 621 SLLAKGPAGAYYSLVSLQTTP 641 (643)
Q Consensus 621 eLl~~~~~g~y~~l~~~q~~~ 641 (643)
++++ ++|.|+++++.|...
T Consensus 555 ~l~~--~~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 555 ELIQ--KDGRFYKLLRRSGLL 573 (585)
T ss_pred HHHH--CCChHHHHHHhCccc
Confidence 9998 689999999887544
No 29
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-93 Score=725.65 Aligned_cols=549 Identities=27% Similarity=0.382 Sum_probs=451.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 78 GCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSI------FSLLTNVCQQYYFAYMGEYLTKRI 151 (643)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~l 151 (643)
+.++..+..++....|.+...+.+.....+. ... .....++.+.+ .+.+++-++.+++....+-..+++
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~---~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~i 294 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQY---SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREI 294 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhH---HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHH
Confidence 4444445556666677777777776553321 111 12222333322 235566778888888999999999
Q ss_pred HHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Q 006496 152 RENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMS-LIISWRLALVIIAVQPL 230 (643)
Q Consensus 152 r~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~~l 230 (643)
-.++|+|+..+++.|+- .+.+|+++.-+.+....+. +..+....+...+..+.++++.. +.++|+.++++++++.+
T Consensus 295 e~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~l 371 (790)
T KOG0056|consen 295 ETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLL 371 (790)
T ss_pred HHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 99999999999999997 6789999988888777776 55666666666666666555544 34788888887776555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 231 VIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRA 310 (643)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (643)
+............+++++...+-.+......+++-+.+|||-|++|+.+.++|.+...++++...+......+++.+-..
T Consensus 372 Y~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~ 451 (790)
T KOG0056|consen 372 YCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNG 451 (790)
T ss_pred HhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54333222222233444544455555566689999999999999999999999999988887766655554455555445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCC
Q 006496 311 LVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQ 390 (643)
Q Consensus 311 ~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~ 390 (643)
+..+...+.-.+.++.+..+..++|+.+.+.+++.++.+|+..++..+..+++...-+++++++++++++..+ .+..++
T Consensus 452 Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd-~P~a~p 530 (790)
T KOG0056|consen 452 IIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD-LPGAPP 530 (790)
T ss_pred hhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc-CCCCCC
Confidence 5555555555556677889999999999999999999999999999999999999999999999988776543 233223
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH
Q 006496 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR 470 (643)
Q Consensus 391 ~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~ 470 (643)
....+|.|+|+||+|.|++ .+|+|+||||+++||+.+|+|||||+||||++++|+|+||.++|+|.|||+||+..+.+
T Consensus 531 l~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred ccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence 3345789999999999964 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||++||+||||..|||+||.+||.|++ +.+++||+.+|++++++||-|.++|+||+|.|||+|..||||||||+||||
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcH
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGA 630 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~ 630 (643)
+++|+|.|++|||||||||..||+.||.++.+..++||.|+|||||+|+-+||.|+|+++|+|+|.|+|+||++. .+|.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r-dgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR-DGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 4899
Q ss_pred HHHHHHhhc
Q 006496 631 YYSLVSLQT 639 (643)
Q Consensus 631 y~~l~~~q~ 639 (643)
|++||+.|+
T Consensus 767 Ya~MWq~qq 775 (790)
T KOG0056|consen 767 YADMWQAQQ 775 (790)
T ss_pred HHHHHHHHH
Confidence 999997664
No 30
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-90 Score=719.13 Aligned_cols=557 Identities=27% Similarity=0.405 Sum_probs=466.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccChhh-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 74 QASLGCLSAVLF-GAVQPVYAFAMGSMISVYFLKDHDE-IKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRI 151 (643)
Q Consensus 74 ~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (643)
..++..++.++. -......|++++..++..-..+..+ ........+..|.++.+++.++..++...+.+..+++.+..
T Consensus 30 ~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~ 109 (591)
T KOG0057|consen 30 FRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDS 109 (591)
T ss_pred ehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 4566778888888888542111111 11111223456667778889999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Q 006496 152 RENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMS-LIISWRLALVIIAVQPL 230 (643)
Q Consensus 152 r~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~~l 230 (643)
-.++|++.+++++++|. +..+|++.+.+.+....+..++.-.+..++..++.+......+ .-+++..+++.+..+..
T Consensus 110 ~~~vf~~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~ 187 (591)
T KOG0057|consen 110 SSDVFRHLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGA 187 (591)
T ss_pred HHHHHHHHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99999999999999998 6789999999999999999888777777766666555444333 33556556665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 231 VIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRA 310 (643)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (643)
+..+.+.......+.+++..++.+...+.+.|++.|-++||.||-|+++.++|.....++.+...+.....++.+..-..
T Consensus 188 Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~ 267 (591)
T KOG0057|consen 188 YAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKA 267 (591)
T ss_pred hheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHH
Confidence 55555555555556777888899999999999999999999999999999999999999999888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCC
Q 006496 311 LVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQ 390 (643)
Q Consensus 311 ~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~ 390 (643)
+..+..+.+.++|..-+.++.+|+|.++.......++..|+..++..+..+.++..-+..++...+...++.. ...+
T Consensus 268 iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~ 344 (591)
T KOG0057|consen 268 IFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALP 344 (591)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCC
Confidence 7766666667777776788999999999999999999999999999999998888877776655433222111 1112
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH
Q 006496 391 PEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR 470 (643)
Q Consensus 391 ~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~ 470 (643)
+....+.|+|+||+|+|++ .+++|+++||+|++||||||||+|||||||++++|+||++ ++|+|+|||+|+++++++
T Consensus 345 i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 345 IELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLE 421 (591)
T ss_pred cccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChH
Confidence 2234567999999999974 4569999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
++|+.|||||||..||++||-+||.+| ++.+++||+.++||.+++||.|.+||+||+|.|||+|..||||||||++|||
T Consensus 422 SlR~~Ig~VPQd~~LFndTIl~NI~YG-n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFNDTILYNIKYG-NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HhhhheeEeCCcccccchhHHHHhhcC-CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 999999999999999999999999999 5689999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcH
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGA 630 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~ 630 (643)
|++|||||+++|||||+||.+||+.+.+.|.....+||+|+|+||++++++||+|+++|||+++|+|+|+||++ +.+.
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~--~s~~ 578 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA--PSEL 578 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh--hhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred HHHHHHhhcCC
Q 006496 631 YYSLVSLQTTP 641 (643)
Q Consensus 631 y~~l~~~q~~~ 641 (643)
|+++|..|...
T Consensus 579 ~~~~w~~~~~~ 589 (591)
T KOG0057|consen 579 YADLWTTQTSS 589 (591)
T ss_pred HHHHhcccccc
Confidence 99999988654
No 31
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.3e-89 Score=769.07 Aligned_cols=547 Identities=24% Similarity=0.339 Sum_probs=473.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 006496 84 LFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFE 163 (643)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~ 163 (643)
+..++....|++++.++|........ ......++++++++.++..++.++..++....+.++..++|.++|++++++|
T Consensus 6 ~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 6 IIAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445556788888888865432111 1122334444555556677777888888888999999999999999999999
Q ss_pred ccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 164 VGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMS-LIISWRLALVIIAVQPLVIVCLYGKEVLL 242 (643)
Q Consensus 164 ~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~~l~~~~~~~~~~~~ 242 (643)
++||+ ++++|++++|+++|++.++..+...+..++..+..++++++++ ++++|.+++++++++|+.+++.....+..
T Consensus 84 ~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 84 PEFYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred HHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 6789999999999999999777666666666655555554444 57999999998888888888777788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 243 KSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWY 322 (643)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (643)
.+..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..+..+....+...+..+..++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999999999999999999999999999998888888888877777766666666667777888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCccccEEEEe
Q 006496 323 GGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELED 402 (643)
Q Consensus 323 g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 402 (643)
|++++..|.+++|.++++..+...+..|+..+...+..+..+..+..|+.++++.+++.+... ...+...+.|+++|
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~ 318 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNI 318 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999987654322111 11122345799999
Q ss_pred EEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecC
Q 006496 403 VHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQE 482 (643)
Q Consensus 403 vsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~ 482 (643)
|+|+|++. +.++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999853 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 006496 483 PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562 (643)
Q Consensus 483 p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLD 562 (643)
|++|+|||||||+++. +++++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|+|||||
T Consensus 398 ~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 398 PFLFSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred CeeccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999984 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhcCC
Q 006496 563 EATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTTP 641 (643)
Q Consensus 563 E~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~~~ 641 (643)
||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|++|++ ++|.|++|++.|..+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~y~~l~~~~~~~ 553 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ--QSGWYRDMYRYQQLE 553 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH--cCChHHHHHHHhhhc
Confidence 99999999999999999999888999999999999999999999999999999999999998 679999999877543
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.7e-88 Score=815.99 Aligned_cols=570 Identities=27% Similarity=0.471 Sum_probs=501.4
Q ss_pred HHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALN-IPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 138 (643)
Q Consensus 60 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (643)
++..++.+. +.++..++++++++++.+++.+++|++++.+++.+.... ....+++.+++++++.+++.+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~ 119 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE------NVNDIIFSLVLIGIFQFILSFISSF 119 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566554 456777888899999999999999999999999753211 1223344555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006496 139 YFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218 (643)
Q Consensus 139 ~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (643)
++.+++.++..++|.++|++++++|++||+ .+++|+++++++.|++.+++.+...+..++..++.++++++++++++|
T Consensus 120 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd--~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw 197 (1466)
T PTZ00265 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHD--NNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNA 197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 678999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQS 298 (643)
Q Consensus 219 ~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 298 (643)
.+++++++++|+++++..+..+++++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|.+..+...+...+..
T Consensus 198 ~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~ 277 (1466)
T PTZ00265 198 RLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888788888888999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 299 WIAGICLAFSRALVSCVVALAFWYGGRLVGRG--------YIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVAS 370 (643)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 370 (643)
.+.++...+..++..+.+++++|+|++++..| .+++|.+++++.........+..+...+..+..+..+..|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~r 357 (1466)
T PTZ00265 278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNS 357 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999875 5788888877766666566666677788899999999999
Q ss_pred HHHHHccCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC
Q 006496 371 VFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY 450 (643)
Q Consensus 371 i~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~ 450 (643)
++++++.+++.++. ..+..++. .+.|+|+||+|+||.+++.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 358 i~~ii~~~~~~~~~-~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 358 LYEIINRKPLVENN-DDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred HHHHHcCCCCCCCC-CCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999876654321 11111121 24799999999998654457999999999999999999999999999999999999
Q ss_pred CCCCcEEEE-CCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCC------------------------------
Q 006496 451 DPLKGVVKI-DGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGAS------------------------------ 499 (643)
Q Consensus 451 ~~~~G~I~i-dG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~------------------------------ 499 (643)
+|++|+|.+ ||.|+++++.+++|++|+||||+|.||++||+|||.+|..
T Consensus 436 ~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 436 DPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred cCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999999999 6799999999999999999999999999999999999731
Q ss_pred --------------------------CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 500 --------------------------DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 500 --------------------------~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
++++++++++|++.+++++||.+||+||||.+|++|.+||||||||||||||++
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 135789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhhcCEEEEEeCC--------------------
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQNCDIIAVLEQG-------------------- 611 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~vl~~G-------------------- 611 (643)
++|+|||||||||+||+++++.|++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~ 675 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNK 675 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccc
Confidence 9999999999999999999999999999886 479999999999999999999999986
Q ss_pred ---------------------------EEEEEcChhHHhhcCCCcHHHHHHHhhcC
Q 006496 612 ---------------------------RVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 612 ---------------------------~Ive~G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
+|+|+|||+||+++ ++|.|+.|++.|..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~-~~g~y~~l~~~q~~ 730 (1466)
T PTZ00265 676 ENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKN-KNGIYYTMINNQKV 730 (1466)
T ss_pred ccccccccccccccccccccccccCCceeEeeCCHHHHHhc-cCCcHHHHHhhhcc
Confidence 59999999999974 58999999988743
No 33
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.6e-88 Score=822.27 Aligned_cols=508 Identities=19% Similarity=0.233 Sum_probs=411.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 120 LCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALL 199 (643)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~ 199 (643)
.+|++++++..++.+++.+++...+.+...++|.+++++++++|++||+ ++++|+++||+++|++.+++.+...+..+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~ 1006 (1490)
T TIGR01271 929 YIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDF 1006 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666777888888899999999999999999999999998 78999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH
Q 006496 200 VQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERI 279 (643)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 279 (643)
+..++.+++.++++++++|.+.+++++++++++.+..++.+..++..+...+..+++..++.|+++|+.+||+|++++++
T Consensus 1007 ~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~ 1086 (1490)
T TIGR01271 1007 IQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYF 1086 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHH
Confidence 88888888888888888886544333222222222222333333444445667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 280 QKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVA--LAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTM 357 (643)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
.+++.+..+..............++.....++..+..+ +++.++.. .+..|.++.++.+...+..++..+...
T Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~ 1161 (1490)
T TIGR01271 1087 ETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNS 1161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888765443332222222222222222111111 11222222 234555666666677777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHccCcCCCCCCCC--------------CCCC--CCccccEEEEeEEEECCCCCCccceeeeeE
Q 006496 358 TTDIAKGSDAVASVFAVLDRHTKIDPDDLN--------------GYQP--EKIIGHIELEDVHFAYPARPNVMIFKGFSI 421 (643)
Q Consensus 358 ~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl 421 (643)
+..++....+++|+.++.+.+++....... ...+ .+..|.|+|+||+|+|+++ .+++|+|+||
T Consensus 1162 ~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~ 1240 (1490)
T TIGR01271 1162 SIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSF 1240 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEE
Confidence 999999999999999998765442211000 0011 1235789999999999754 4579999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCC
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDK 501 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~ 501 (643)
+|+|||+||||||||||||||+++|+|+++ .+|+|.|||+|+++++++++|++|+||||||+||+|||||||.+. .+
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~ 1317 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQ 1317 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cC
Confidence 999999999999999999999999999997 799999999999999999999999999999999999999999865 36
Q ss_pred CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHH
Q 006496 502 IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALE 581 (643)
Q Consensus 502 ~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~ 581 (643)
++|+++|+||+.|+++++|.++|+||||+|||+|.||||||||||||||||+|+|+|||||||||+||++|++.|++.|+
T Consensus 1318 ~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhhcC
Q 006496 582 RLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQTT 640 (643)
Q Consensus 582 ~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q~~ 640 (643)
+.+++||+|+||||++++.+||+|+||++|+|+|.|+|++|++ ++|.|++|++.+.+
T Consensus 1398 ~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~--~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1398 QSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN--ETSLFKQAMSAADR 1454 (1490)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc--CCcHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999997 68999999987654
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.6e-87 Score=749.81 Aligned_cols=527 Identities=26% Similarity=0.331 Sum_probs=457.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 73 KQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIR 152 (643)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 152 (643)
+.+.++.+++++.+++.+..|++++.++|........ ......+++++++++++..++.+++.++..+++.++..++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888999999999865322111 11233345555566677888899999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006496 153 ENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVI 232 (643)
Q Consensus 153 ~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~ 232 (643)
.++|++++++|..+|+ +.++|++++|+++|++.+++.+...+..++..+..+++++++++.++|.+++++++..|+.+
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999998 78999999999999999999888777777777778888888889999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 233 VCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALV 312 (643)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (643)
++.....++.++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888889999999999999999999999999999999999998888877777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCC
Q 006496 313 SCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPE 392 (643)
Q Consensus 313 ~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~ 392 (643)
.+..++++.++++.+..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++++.+++... .. ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~--~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA--PVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc--CCCC
Confidence 56555555566666679999999999998888889999999999999999999999999999874432111 11 1111
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH
Q 006496 393 KIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 393 ~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l 472 (643)
...+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123579999999999864 3468999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 473 RRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 473 r~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
|++++||||||++|+|||||||+++. ++++|++++++++.+++++|++++|+||||.+||+|.+|||||||||+||||+
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999984 56899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEE
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVL 608 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl 608 (643)
+++|+|+|||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999988899999999999999999999986
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.9e-85 Score=731.31 Aligned_cols=537 Identities=23% Similarity=0.306 Sum_probs=460.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 71 EWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKR 150 (643)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
+++.+....++.++..++....|++++.++|....... ......++++++++.++..++.+++.++....+.++..+
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777888889999999986542211 112333444555556667788888999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006496 151 IRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD-RVALLVQTFSSITIAFTMSLIISWRLALVIIAVQP 229 (643)
Q Consensus 151 lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~ 229 (643)
+|.++|+|++++|++. .+...+++++|++.+++.+.. .+..++..++.++. ++++++++|.+++++++.+|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999842 245678899999999988765 44555555554444 45678899999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 230 LVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSR 309 (643)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (643)
+++++..+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+..+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776667777777777888889999999999999999999999999999999999999988887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCC
Q 006496 310 ALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGY 389 (643)
Q Consensus 310 ~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 389 (643)
++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+..|+.++++.+++..+. ..
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~ 309 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CC
Confidence 777777777888999999999999999999999999999999999999999999999999999998765432111 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH
Q 006496 390 QPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL 469 (643)
Q Consensus 390 ~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~ 469 (643)
.+...+.|+++||+|+|+++ +.++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 310 -~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 310 -LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred -CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 11223579999999999754 3468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+++|++++||||+|++|++|+||||+++. +++++++++++++.++++++++++|+|+||.+||+|.+||||||||++||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999874 46899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|+++|.|+|+||++
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999999875 5799999999999999999999999999999999999986
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-88 Score=680.51 Aligned_cols=492 Identities=30% Similarity=0.446 Sum_probs=433.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 006496 138 YYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTM-SLII 216 (643)
Q Consensus 138 ~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (643)
.++...++.....+--+.|.|+.++++.|+- +..+|.+...+....+-++....+.+...+..++-+....++ +..+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3556677888888889999999999999987 667888888787788788887777777777777766555444 4467
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 006496 217 SWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVR 296 (643)
Q Consensus 217 ~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|+.+++.++++.+++++.....-.....+++..++-+.......+++-+.+++|.|+-|+.+..+|.+..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89888888877666665544433333345566677788888889999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 297 QSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
.....++++..-..+.......+...++..+..|.+|.|+++..-.++.+...|+..++..+.++.++...+++++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77777777777777777777777788888899999999999999999999999999999999999999999999999987
Q ss_pred cCcCCCCCCCCCC-CCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc
Q 006496 377 RHTKIDPDDLNGY-QPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG 455 (643)
Q Consensus 377 ~~~~~~~~~~~~~-~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G 455 (643)
.+.+... .+..+ ..+...|.|.|+||+|.|.. .+++|+++||++++|+++||||+||+||||++++|+|||++++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 7655322 22211 11134578999999999964 56899999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCC
Q 006496 456 VVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRG 535 (643)
Q Consensus 456 ~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G 535 (643)
.|.+||+|+++...+++|+.||.||||..||++|+..||.+|+ +++++||+++|++.+++++||+++|+||||.|||+|
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 9999999999999999999999999999999999999999995 689999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEE
Q 006496 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVE 615 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive 615 (643)
-.||||||||+||||+++|+|+||+|||||||||.+||+.||.+|++..+++|+++|||||+||.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHhhcCCCcHHHHHHHh
Q 006496 616 EGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 616 ~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
.|+|+||++ ++|.|++||.+
T Consensus 478 rg~h~~ll~--~~g~ya~mw~~ 497 (497)
T COG5265 478 RGTHEELLA--AGGLYAEMWRR 497 (497)
T ss_pred cCcHHHHHH--cCChHHHHhcC
Confidence 999999999 79999999963
No 37
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-83 Score=740.12 Aligned_cols=543 Identities=22% Similarity=0.263 Sum_probs=448.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 71 EWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKR 150 (643)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
.|+.+++..++..+...+..+.|.++..+++.+-.. .........|++++++..++..++.....+...+.|.++...
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a 276 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA 276 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence 466666666666666666788899999988864332 111122334554444444555554444444556789999999
Q ss_pred HHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006496 151 IRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPL 230 (643)
Q Consensus 151 lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l 230 (643)
+-..+|+|.++++.+.- .+++.|+++|.++.|++++++.....+..|..++..+++...++..++| .++++++++.+
T Consensus 277 l~~~IY~K~L~ls~~~~--~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G~~~~il 353 (1381)
T KOG0054|consen 277 LISAIYRKALRLSNSAR--GETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAGVAVMVL 353 (1381)
T ss_pred HHHHHHHhhhcCchhhc--cCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHH
Confidence 99999999999988754 3688999999999999999999999888888888877777777777787 67888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 231 VIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRA 310 (643)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (643)
++++..+..+.+.+.+++.++.+|++.+.++|.++||++||+|+||+.|.++..+.+++..+...+.....++...+..+
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~ 433 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFF 433 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998877766666666555444433
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCC
Q 006496 311 LVSCVVALAFWYGGRL-VGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGY 389 (643)
Q Consensus 311 ~~~~~~~~~~~~g~~l-v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 389 (643)
...++.++.+ +.+. ...+.+++...++++.++..+..|+..+......+.++..+..|+.+++..++.. +......
T Consensus 434 ~p~lv~~~tF--~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~-~~~~~~~ 510 (1381)
T KOG0054|consen 434 SPVLVSVVTF--VVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD-PDSVERS 510 (1381)
T ss_pred HHHHHHHHHH--HHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-ccccccC
Confidence 3333333332 2222 3355677777888888888888888888888999999999999999998754322 1111101
Q ss_pred CCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH
Q 006496 390 QPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL 469 (643)
Q Consensus 390 ~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~ 469 (643)
.++.....|+++|.+|+|+...+.+.|+||||+|++|+++||||++|||||||+++|+|.+++.+|+|.++|.
T Consensus 511 ~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------- 583 (1381)
T KOG0054|consen 511 PDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------- 583 (1381)
T ss_pred CCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------
Confidence 1222334699999999997643446999999999999999999999999999999999999999999999997
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
++||||+||||+|||||||.||. ++++++|++++++|+|+++++.||.|+.|+|||+|.||||||||||+||
T Consensus 584 ------iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 584 ------VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred ------EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 99999999999999999999994 6999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHH-HHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCC
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEK-VVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPA 628 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~-~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~ 628 (643)
||+|+|+||++||+|.||||+++.+ .+.+||+..+++||+|+|||+++.+++||+|++|+||+|++.|+|+||++ .+
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~--~~ 733 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK--SG 733 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh--cc
Confidence 9999999999999999999999877 67899999999999999999999999999999999999999999999998 67
Q ss_pred cHHHHHHHhh
Q 006496 629 GAYYSLVSLQ 638 (643)
Q Consensus 629 g~y~~l~~~q 638 (643)
+.|.+|..++
T Consensus 734 ~~~~~l~~~~ 743 (1381)
T KOG0054|consen 734 GDFAELAHEE 743 (1381)
T ss_pred hhHHHHhhcc
Confidence 8888885443
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-81 Score=767.79 Aligned_cols=541 Identities=17% Similarity=0.203 Sum_probs=423.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 71 EWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKR 150 (643)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
.++.++.+.++.++..++..+.|++++.+++....... ......+++++++..++..+......+...+.+.++...
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP---AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777778888888899999998885422211 111111222222222222222211122235688889999
Q ss_pred HHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Q 006496 151 IRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLI-ISWRLALVIIAVQP 229 (643)
Q Consensus 151 lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lv~~~~~~ 229 (643)
++..+|+|+++++..+++ +.++|+++|++++|++.+++.+.. +..++...+.+++++++++. ++| .+++++++++
T Consensus 376 l~~~i~~k~l~l~~~~~~--~~~~G~i~n~ls~Dv~~i~~~~~~-l~~l~~~p~~ii~~~~~l~~~lg~-~~l~~~~v~~ 451 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARK--NFASGKVTNMITTDANALQQIAEQ-LHGLWSAPFRIIVSMVLLYQQLGV-ASLFGSLILF 451 (1495)
T ss_pred HHHHHHHHHhcCChhhcC--CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 999999999999999887 678999999999999999998643 33333333333333333222 222 1222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 230 LVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSR 309 (643)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (643)
+++++..+..+...+..++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.+++..+...+..+...+...+..
T Consensus 452 l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1495)
T PLN03232 452 LLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILN 531 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556677778888899999999999999999999999999999999999999888877776666665554433222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCC
Q 006496 310 ALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGY 389 (643)
Q Consensus 310 ~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 389 (643)
... ..+.++++|++++..|.+++|.+++++.++..+..|+..+...+..+.++..+.+|+.++++.+++...... .
T Consensus 532 ~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~ 607 (1495)
T PLN03232 532 SIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--P 607 (1495)
T ss_pred HHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--C
Confidence 221 122345678888889999999999999999999999999999999999999999999999876543211111 1
Q ss_pred CCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH
Q 006496 390 QPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL 469 (643)
Q Consensus 390 ~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~ 469 (643)
.....+.|+|+||+|+|+++++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 608 -~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------- 675 (1495)
T PLN03232 608 -LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------- 675 (1495)
T ss_pred -cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------
Confidence 11123469999999999864446799999999999999999999999999999999999999998763
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
.+|++|+||||+||||+|||||||+||. ++++|++++|++.|+++++++.||+|++|+|||+|.+||||||||||||
T Consensus 676 -~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 676 -VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred -EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 4677899999999999999999999994 4899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCC
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVV-QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPA 628 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i-~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~ 628 (643)
||+|++|+||||||||||||+++++.+ +++++...+++|+|+||||++.++.||+|++|++|+|+|.|+|+||++ ++
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~--~~ 830 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK--SG 830 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh--cc
Confidence 999999999999999999999999966 566787788999999999999999999999999999999999999998 67
Q ss_pred cHHHHHHHhhc
Q 006496 629 GAYYSLVSLQT 639 (643)
Q Consensus 629 g~y~~l~~~q~ 639 (643)
+.|+++++.+.
T Consensus 831 ~~~~~l~~~~~ 841 (1495)
T PLN03232 831 SLFKKLMENAG 841 (1495)
T ss_pred hhHHHHHHhcc
Confidence 89999987654
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7e-81 Score=761.08 Aligned_cols=540 Identities=18% Similarity=0.214 Sum_probs=423.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 70 PEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTK 149 (643)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (643)
..++.++++.++.++..++..+.|++++.+++....... ......+++++++..++..+...-..+....++.++..
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 374 (1622)
T PLN03130 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP---AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777888888899999988875432211 01111122211111122221111111123468888999
Q ss_pred HHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 006496 150 RIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLI-ISWRLALVIIAVQ 228 (643)
Q Consensus 150 ~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lv~~~~~ 228 (643)
.++..+|+|+++++..++. +.++|+++|++++|++.+++.+......+ ...+.+++++++++. +.| .++++++++
T Consensus 375 ~L~~~i~~k~L~l~~~~~~--~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~-~~pl~ii~~~~lL~~~lg~-~~l~g~~v~ 450 (1622)
T PLN03130 375 TLVAAVFRKSLRLTHEGRK--KFTSGKITNLMTTDAEALQQICQQLHTLW-SAPFRIIIAMVLLYQQLGV-ASLIGSLML 450 (1622)
T ss_pred HHHHHHHHHHhcCChhhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999886 67899999999999999999875544433 333344443333332 333 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 229 PLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFS 308 (643)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (643)
++++++..+..+++++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.+++..+...+......+...+.
T Consensus 451 ~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 530 (1622)
T PLN03130 451 VLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667777788888899999999999999999999999999999999999988887766555555544433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCC
Q 006496 309 RALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNG 388 (643)
Q Consensus 309 ~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~ 388 (643)
..+.. .+.++++|++++..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++++.++..... ..
T Consensus 531 ~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~--~~ 606 (1622)
T PLN03130 531 NSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP--NP 606 (1622)
T ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--CC
Confidence 22211 234455777888899999999999999888889999999999999999999999999998754321111 11
Q ss_pred CCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cEEEECCeeCCCC
Q 006496 389 YQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK-GVVKIDGRDIRSH 467 (643)
Q Consensus 389 ~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~-G~I~idG~di~~~ 467 (643)
. .....+.|+|+||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+.|
T Consensus 607 ~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~------ 679 (1622)
T PLN03130 607 P-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------ 679 (1622)
T ss_pred c-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC------
Confidence 1 1111346999999999985444579999999999999999999999999999999999999999 9998644
Q ss_pred CHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 468 HLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 468 ~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
+|+||||+||||+|||||||+||. +++++++++|++.|+|+++|+.||+|++|.|||+|.+||||||||||
T Consensus 680 -------~Iayv~Q~p~LfngTIreNI~fg~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 680 -------TVAYVPQVSWIFNATVRDNILFGS--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred -------eEEEEcCccccCCCCHHHHHhCCC--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 599999999999999999999994 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcC
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVV-QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKG 626 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i-~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 626 (643)
||||+|++|+||||||||||||+++++.| +++++...++||+|+||||++.++.||+|++|++|+|+|.|+|+||++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~-- 828 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN-- 828 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh--
Confidence 99999999999999999999999999865 678888888999999999999999999999999999999999999998
Q ss_pred CCcHHHHHHHhh
Q 006496 627 PAGAYYSLVSLQ 638 (643)
Q Consensus 627 ~~g~y~~l~~~q 638 (643)
+++.|+++++.+
T Consensus 829 ~~~~~~~l~~~~ 840 (1622)
T PLN03130 829 NGPLFQKLMENA 840 (1622)
T ss_pred cchhHHHHHHhc
Confidence 678999998764
No 40
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.2e-80 Score=694.96 Aligned_cols=534 Identities=16% Similarity=0.179 Sum_probs=436.2
Q ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 60 SFRRLLALNI-PEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 138 (643)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (643)
.+++++.+.+ ++++.++++.+++++.+++....|++++.+++..... . ... ...++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-G----QGS---LFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c----chH---HHHHHHHHHHHHHHHHHHHH
Confidence 3456666677 7788888888888888888888888777766521100 0 001 11233344556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006496 139 YFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218 (643)
Q Consensus 139 ~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (643)
+....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.. ...++..+..++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 888999999999999999999999999998 678999999999999999998864 55666777777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHHHHHHHHHH
Q 006496 219 RLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQE--RIQKMLKKAHEAPRREGVR 296 (643)
Q Consensus 219 ~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~ 296 (643)
.+++++++++|+.+++..+..++.++...+..+..++..+.+.|.++|+++||+|+.++ ...+++.+..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888888877776666666667677778888999999999999999999999954 5577788877777776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 297 QSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
..+.......+..++..+...++++++++. +.+++|.++++..+...+..|+..+...+..++++..+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555444444434444444444444444432 78999999999999999999999999999999999999999999975
Q ss_pred cCcC--CCCCCC--CCC---CCCCccccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 006496 377 RHTK--IDPDDL--NGY---QPEKIIGHIELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIE 447 (643)
Q Consensus 377 ~~~~--~~~~~~--~~~---~~~~~~~~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~ 447 (643)
...+ ...+.+ ... .+....+.|+|+||+|+|++.+ ..++|+|+||++++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3211 110000 000 1112245799999999997531 236899999999999999999999999999999999
Q ss_pred ccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhccccc
Q 006496 448 RFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGY 527 (643)
Q Consensus 448 gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gl 527 (643)
|+|+|++|+|.+||.|+++++.+++|+++++|+|||++|++|+++|+ . +++++++++++++.++++++++.+|+||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999999999999999999999999999999999999999996 2 3578999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHH-H-cCCceEEEEccCcchhhhcCEE
Q 006496 528 DTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALER-L-MVERTSVVVAHRLSTIQNCDII 605 (643)
Q Consensus 528 dt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~-~-~~~~TvI~ItHrl~~i~~~D~I 605 (643)
||. .+|||||||||+||||++++|+|||||||||+||+++|+.+++.+.+ . .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 995 78999999999999999999999999999999999999999887743 3 4689999999999999999999
Q ss_pred EEEeCCEEEEE
Q 006496 606 AVLEQGRVVEE 616 (643)
Q Consensus 606 ~vl~~G~Ive~ 616 (643)
++|++|+|+|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999875
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-79 Score=630.65 Aligned_cols=533 Identities=26% Similarity=0.319 Sum_probs=458.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 78 GCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLS 157 (643)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 157 (643)
..+++.+-.++....|+++-++.|....+.+. ..+.....+.+++.++..++.+++..+..+++.++..++...+|.
T Consensus 28 v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~---~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~ 104 (580)
T COG4618 28 VGLFSAVINLLALTGPLYMLQVYDRVLPSRSV---PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFA 104 (580)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444555556677777777776543321 122223333445566778888999999999999999999999999
Q ss_pred HHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006496 158 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYG 237 (643)
Q Consensus 158 ~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~ 237 (643)
..++++.. .+..|+=.+-+ +|.+.++.++...-...+...-.+-+.+.+.|.++|+++++.++.+.+++.+.++
T Consensus 105 a~~~~~l~-----~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~l 178 (580)
T COG4618 105 ASFSAPLL-----RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALL 178 (580)
T ss_pred HHHhhHHh-----hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877776 34455445544 8999999988653333333333444556677888998999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 238 KEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVA 317 (643)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (643)
-.+..++.-++..+...+.+....-+.+|.++|++.|+.....++|.+...++.....+.+-..+.+..++..+-++...
T Consensus 179 n~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs 258 (580)
T COG4618 179 NERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQS 258 (580)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888899999999999999999999999999999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCcccc
Q 006496 318 LAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGH 397 (643)
Q Consensus 318 ~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (643)
.++.+|++++..|++|+|.+++....+.....|+..+...|.++..+..+..|+.+++...|...+ . ...+..+|.
T Consensus 259 ~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~-m~LP~P~g~ 334 (580)
T COG4618 259 AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---R-MPLPAPQGA 334 (580)
T ss_pred HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---C-CCCCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999987664322 1 223445689
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
+.++++++.-|+. ++++|+|+||+++|||-+||+||||||||||.++|.|.++|.+|.|++||-|+++++++.+-++||
T Consensus 335 L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 335 LSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 9999999988765 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|.|||..||+|||+|||+-. .++.|+|++.+|++.++.||.|.+||+||||.|||+|..|||||||||+||||+|.||.
T Consensus 414 YLPQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 414 YLPQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred cCcccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 99999999999999999865 35789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
+++||||-|+||.+-|+.+.++|.+.. +++|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999997764 57999999999999999999999999999999999999874
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-74 Score=647.87 Aligned_cols=523 Identities=17% Similarity=0.172 Sum_probs=400.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 69 IPEWKQASLGCLSAVLFGAVQPVY-AFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYL 147 (643)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (643)
+++++.++++.+++++..++.... |++.+.+++.... . ......+ +++.++..++.++..++..+++.++
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (547)
T PRK10522 9 RQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S----LLVLPEF----LGLLLLLMAVTLGSQLALTTLGHHF 79 (547)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c----chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666553 5555666664311 0 0011111 1222223445677888888899999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006496 148 TKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAV 227 (643)
Q Consensus 148 ~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 227 (643)
..++|.++|++++++|++||+ ++++|++++|+++|++.+...+.. +..++..++.++++++++++++|.++++++++
T Consensus 80 ~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 80 VYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999998 788999999999999999986654 55667777778888888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 228 QPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQ---ERIQKMLKKAHEAPRREGVRQSWIAGIC 304 (643)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (643)
+|+.+++.+...++.++..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..++..+...+..+.....
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 88887777777777777778888999999999999999999996 4433 4567788877777666555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCC
Q 006496 305 LAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPD 384 (643)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 384 (643)
..+..++..+..++.+++++.. ..+ +.+.+..+..+...+..|+..+...+..+..+..+.+|+.++.+.+++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 236 VNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3332222222222233333322 112 2333333333344456789999999999999999999999987543221111
Q ss_pred CCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeC
Q 006496 385 DLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDI 464 (643)
Q Consensus 385 ~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di 464 (643)
.....+ ..+.|+++||+|+||++ .++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 313 --~~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 313 --RPQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred --cccccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 111111 13479999999999843 3689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 465 RSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 465 ~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
++++.+++|++++||||||++|++|++|| + ++.++++++++++.+++++++.. |+|. .+|.+|||||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHH
Confidence 99999999999999999999999999999 3 25788899999999888877653 4442 248899999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhhcCEEEEEeCCEEEEE-cChhH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE-GSHQS 621 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~-G~~~e 621 (643)
|++||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 9999999999999999999999999999999999997665 47999999999999999999999999999988 45544
Q ss_pred Hh
Q 006496 622 LL 623 (643)
Q Consensus 622 Ll 623 (643)
-.
T Consensus 537 ~~ 538 (547)
T PRK10522 537 AA 538 (547)
T ss_pred hh
Confidence 33
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.8e-74 Score=701.52 Aligned_cols=543 Identities=18% Similarity=0.193 Sum_probs=425.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 70 PEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTK 149 (643)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (643)
..++.++.+.++.++..++....|+++..+++.+..... .......++++++++.++..++.....+...+.+.++..
T Consensus 314 ~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 314 TFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA--PDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKT 391 (1522)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777788888899999998875432211 111112233333333334444433333455678999999
Q ss_pred HHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 006496 150 RIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLI-ISWRLALVIIAVQ 228 (643)
Q Consensus 150 ~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lv~~~~~ 228 (643)
.++..+|+|+++++..+++ +.++|+++|++++|++++.+...... .+....+.+++++.+++. .+| .++++++++
T Consensus 392 ~L~~~iy~K~L~l~~~~~~--~~~~G~i~nl~s~D~~~i~~~~~~~~-~~~~~~~~i~~~~~ll~~~~g~-~~l~~l~~~ 467 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARK--SSTVGEIVNLMSVDAQRFMDLATYIN-MIWSAPLQVILALYFLWLNLGP-SVLAGVAVM 467 (1522)
T ss_pred HHHHHHHHHHHhCChhhcC--CCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 9999999999999999886 67899999999999999998664433 333444444444443332 333 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 229 PLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFS 308 (643)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (643)
++++++.....+.+++.+++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.+++..+...+..+...+.....
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 547 (1522)
T TIGR00957 468 VLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888888999999999999999999999999999999999999999988887766555555544332221
Q ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCC
Q 006496 309 RALVSCVVALAFWYGGRLVG--RGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDL 386 (643)
Q Consensus 309 ~~~~~~~~~~~~~~g~~lv~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~ 386 (643)
..... .+.++.++.+++. .+.++.+.+++++.++..+..|+..+...+..+..+..+.+|+.++++.+++......
T Consensus 548 ~~~~~--~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~ 625 (1522)
T TIGR00957 548 VCTPF--LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIE 625 (1522)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 11111 1122223445544 3567888888888888888889999999999999999999999999875433211100
Q ss_pred CCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC
Q 006496 387 NGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS 466 (643)
Q Consensus 387 ~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~ 466 (643)
.....+...+.|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 626 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 700 (1522)
T TIGR00957 626 RRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS---- 700 (1522)
T ss_pred ccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE----
Confidence 001111112369999999999753 346999999999999999999999999999999999999999999999984
Q ss_pred CCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 467 HHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 467 ~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
|+||||+|++|++||||||.+|. ++++++++++++.|++.++++.+|+|++|.+||+|.+||||||||+
T Consensus 701 ---------i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi 769 (1522)
T TIGR00957 701 ---------VAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 769 (1522)
T ss_pred ---------EEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHH
Confidence 99999999999999999999984 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHH---HHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALE---RLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~---~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+||||++++|+|+||||||||||+++++.+.+.+. ...+++|+|+|||+++.+..||+|++|++|+|++.|+|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999988885 346789999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhh
Q 006496 624 AKGPAGAYYSLVSLQ 638 (643)
Q Consensus 624 ~~~~~g~y~~l~~~q 638 (643)
+ +++.|++++..+
T Consensus 850 ~--~~~~~~~l~~~~ 862 (1522)
T TIGR00957 850 Q--RDGAFAEFLRTY 862 (1522)
T ss_pred h--cchhHHHHHHhh
Confidence 8 678899988643
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.8e-70 Score=668.82 Aligned_cols=536 Identities=20% Similarity=0.225 Sum_probs=424.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 71 EWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKR 150 (643)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (643)
.++.+++..++.++..++..+.|+++..+++.+. ............++++++++.++..++.....|.....+.++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~ 156 (1490)
T TIGR01271 78 FFWRFVFYGILLYFGEATKAVQPLLLGRIIASYD-PFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIA 156 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777788889999999887542 111110111223344444444555555555666667788899999
Q ss_pred HHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006496 151 IRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPL 230 (643)
Q Consensus 151 lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l 230 (643)
+...+|+|+++++...++ +.++|+++|++++|++.+.+.+...+..|..++..+++++.++..++| .+++.++++++
T Consensus 157 L~~~iy~K~L~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~l~~l~v~~~ 233 (1490)
T TIGR01271 157 LFSLIYKKTLKLSSRVLD--KISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NGFCGLGFLIL 233 (1490)
T ss_pred HHHHHHHHHHhCCHHHhc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999886 678999999999999999998766655444444344333333344555 67778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 231 VIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRA 310 (643)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (643)
++++..++.+.+.+.+++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.++...+...+..++..+...+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~ 313 (1490)
T TIGR01271 234 LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999988877766666655443332222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCC
Q 006496 311 LVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVI-ADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGY 389 (643)
Q Consensus 311 ~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~ 389 (643)
... .+.++.++.+.+..+ .+.+.+++++.++..+..++ ..+...+..+.++..++.|+.+++..++.. ... .
T Consensus 314 ~~~--~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~-~-- 386 (1490)
T TIGR01271 314 SGF--FVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLE-Y-- 386 (1490)
T ss_pred HHH--HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-ccc-c--
Confidence 222 223334445554444 56777777777766666665 467788888999999999999999754321 110 0
Q ss_pred CCCCccccEEEEeEEEECCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCCC
Q 006496 390 QPEKIIGHIELEDVHFAYPARP-------------------------------NVMIFKGFSINIEAKKSTALVGQSGSG 438 (643)
Q Consensus 390 ~~~~~~~~I~~~nvsf~Y~~~~-------------------------------~~~vL~~isl~i~~Ge~vaIvG~sGsG 438 (643)
......|+++|++|.|+... ..++|+|+||+|++||+++|+||+|||
T Consensus 387 --~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsG 464 (1490)
T TIGR01271 387 --NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSG 464 (1490)
T ss_pred --cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCC
Confidence 01123599999999995310 135899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHH
Q 006496 439 KSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHD 518 (643)
Q Consensus 439 KSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~ 518 (643)
||||+++|+|+++|.+|+|.++|. ++||||+||+|++||+|||.||. .++++++.++++.|+|.+
T Consensus 465 KSTLl~~l~G~~~~~~G~i~~~g~-------------iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 465 KSSLLMMIMGELEPSEGKIKHSGR-------------ISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEE 529 (1490)
T ss_pred HHHHHHHHhCCCCCCCceEEECCE-------------EEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHH
Confidence 999999999999999999999994 99999999999999999999984 477888999999999999
Q ss_pred HHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCceEEEEccCcc
Q 006496 519 FIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQE-ALERLMVERTSVVVAHRLS 597 (643)
Q Consensus 519 ~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~-~i~~~~~~~TvI~ItHrl~ 597 (643)
+++.+|+|++|.|||+|.+|||||||||+||||++++|+|+||||||||||+++++.+.+ ++++..+++|+|+|||+++
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 999999999999999999999999999999999999999999999999999999998876 6778788999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHH
Q 006496 598 TIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636 (643)
Q Consensus 598 ~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~ 636 (643)
.+..||+|++|++|+|++.|+|+++.+ .++.|.+++.
T Consensus 610 ~~~~ad~ii~l~~g~i~~~g~~~~l~~--~~~~~~~~~~ 646 (1490)
T TIGR01271 610 HLKKADKILLLHEGVCYFYGTFSELQA--KRPDFSSLLL 646 (1490)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh--cChHHHHHHh
Confidence 999999999999999999999999997 5566777663
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-69 Score=616.80 Aligned_cols=530 Identities=15% Similarity=0.106 Sum_probs=432.3
Q ss_pred HHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006496 61 FRRLLALNIPEWK-----QASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVC 135 (643)
Q Consensus 61 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (643)
+++++++.+++|+ .+++..++.++.+.+....|++.+.+++.....+..........++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665 56667777777788888899999999997654332212111223444455556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 136 QQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLI 215 (643)
Q Consensus 136 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (643)
..++......++...+|.+.|++....+.++|+ + ++|++.+|+++|++.+.+.+...+..++..++.++++.+.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d--~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD--S-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC--C-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888889999999888888888887 3 6899999999999999999999999999999888877777775
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006496 216 -ISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREG 294 (643)
Q Consensus 216 -~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
++|.+++++++..|+.+++...+.+.+.+..++..+..+.......|.++|+++||+|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 006496 295 VRQSWIAGICLAFSRALVSC--VVALAFWYGGRLVG-R----GYIDGKSLFEI-FLI---LVSTGKVIADAGTMTTDIAK 363 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----~~~~~g~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 363 (643)
.+..++...+..+..++... ..+..++.|...+. . |.+|.|.+++. ..+ +..+..|+..+......+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777766542 22223333342332 2 67888876653 333 44557888889999999999
Q ss_pred HHHHHHHHHHHHccCcCCCC---------CCCCC-------------CCCCCccccEEEEeEEEECCCCCCccceeeeeE
Q 006496 364 GSDAVASVFAVLDRHTKIDP---------DDLNG-------------YQPEKIIGHIELEDVHFAYPARPNVMIFKGFSI 421 (643)
Q Consensus 364 ~~~a~~ri~~~~~~~~~~~~---------~~~~~-------------~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl 421 (643)
+..+.+|+.++++..++.+. +.++. ...+...+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999875432110 00000 0001123569999999999743 368999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCC---
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGA--- 498 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~--- 498 (643)
+|++||+++|+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 56799999999999999999999863
Q ss_pred ---CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHH
Q 006496 499 ---SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKV 575 (643)
Q Consensus 499 ---~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~ 575 (643)
.++.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 124678899999999999999988 999999987 466999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC
Q 006496 576 VQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 576 i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.4e-68 Score=647.94 Aligned_cols=547 Identities=19% Similarity=0.206 Sum_probs=430.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 68 NIPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYL 147 (643)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (643)
.+..++.+++++++.++..++....|++++.+++.+ .... ........++++++++.++..++.....+...+.+.++
T Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l-~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 316 (1560)
T PTZ00243 239 FAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFL-DADN-ATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQY 316 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777888888889999999988888643 2211 11111112233333344445555555556667788999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006496 148 TKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAV 227 (643)
Q Consensus 148 ~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 227 (643)
...+...+|+|+++++...+.+.+.++|+++|.+++|++.+.+++...+..|..++..++..+.++..++| .+++.+++
T Consensus 317 r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~v 395 (1560)
T PTZ00243 317 RSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW-CALMAVAV 395 (1560)
T ss_pred HHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 99999999999999988766433568999999999999999999876665555444444334444444555 77777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 228 QPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAF 307 (643)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (643)
+++++++..+..+...+.+++.++.++++.+.+.|.++||++||.++||+.|.+++++.+++..+...+......+...+
T Consensus 396 l~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~ 475 (1560)
T PTZ00243 396 LLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFV 475 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888899999999999999999999999999999999999999999888777766655555544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCC-----C
Q 006496 308 SRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKI-----D 382 (643)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~-----~ 382 (643)
......++.+ +.++.+.+..+.++++.+++++.++..+..|+..+...+..+.++..++.|+.++++.++.. +
T Consensus 476 ~~~~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 553 (1560)
T PTZ00243 476 NNATPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQD 553 (1560)
T ss_pred HHHHHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 3333322222 23455667788999999999999999999999999999999999999999999998654310 0
Q ss_pred --CC-------C---C------C-------C-CC--------------------------CCCccccEEEEeEEEECCCC
Q 006496 383 --PD-------D---L------N-------G-YQ--------------------------PEKIIGHIELEDVHFAYPAR 410 (643)
Q Consensus 383 --~~-------~---~------~-------~-~~--------------------------~~~~~~~I~~~nvsf~Y~~~ 410 (643)
.. . . + + .. .....+.+.++|++|++|..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1560)
T PTZ00243 554 MEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSS 633 (1560)
T ss_pred chhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 00 0 0 0 0 00 00012357888888876410
Q ss_pred -------------------------------------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Q 006496 411 -------------------------------------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL 453 (643)
Q Consensus 411 -------------------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~ 453 (643)
.+.++|+|+||+|++||+++|+|++|||||||+++|+|+++|+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~ 713 (1560)
T PTZ00243 634 ASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS 713 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 1235899999999999999999999999999999999999999
Q ss_pred CcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCC
Q 006496 454 KGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGD 533 (643)
Q Consensus 454 ~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge 533 (643)
+|+|.++ ++|+||||+|++|++||+|||.++. +.+++++.++++.|+++++++.+|+|++|.+|+
T Consensus 714 ~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~ 778 (1560)
T PTZ00243 714 EGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778 (1560)
T ss_pred CcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcC
Confidence 9999875 3599999999999999999999983 357778999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 534 RGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVV-QEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 534 ~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i-~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
+|.+||||||||++||||++++|+|+|||||||+||+++.+.+ .+++....+++|+|+|||+++.+..||+|++|++|+
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGR 858 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999987765 456666667899999999999999999999999999
Q ss_pred EEEEcChhHHhhcCCCcHHHHHHHh
Q 006496 613 VVEEGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 613 Ive~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
|++.|+|+++++ ++.|.++...
T Consensus 859 i~~~G~~~~l~~---~~~~~~~~~~ 880 (1560)
T PTZ00243 859 VEFSGSSADFMR---TSLYATLAAE 880 (1560)
T ss_pred EEEecCHHHHHh---ChHHHHHHHh
Confidence 999999999996 3568887754
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.8e-58 Score=469.44 Aligned_cols=238 Identities=27% Similarity=0.449 Sum_probs=223.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
|.|+|+|++|+|++. ..++|+|+||+|++||+++|+|++|||||||+++|+|+++ .+|+|.+||.++..++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 3468999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++||||+|.+|++|+++|+.+.. ..++++++++++.+++.+++..+|+||+|.++|+|.+||||||||+|||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997431 3678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHH
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~ 635 (643)
|+|+||||||++||+++.+.+++.|++.++++|+|+||||++++..||||++|++|+|++.|+|++|++ .++.|++++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~--~~~~~~~~~ 234 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN--EKSHFKQAI 234 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh--CcHHHHHHH
Confidence 999999999999999999999999998888999999999999999999999999999999999999998 568899998
Q ss_pred Hhhc
Q 006496 636 SLQT 639 (643)
Q Consensus 636 ~~q~ 639 (643)
....
T Consensus 235 ~~~~ 238 (275)
T cd03289 235 SPSD 238 (275)
T ss_pred hhcc
Confidence 7654
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-54 Score=449.59 Aligned_cols=223 Identities=30% Similarity=0.476 Sum_probs=199.4
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCC--CC
Q 006496 395 IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIR--SH 467 (643)
Q Consensus 395 ~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~--~~ 467 (643)
.+.|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++. +.
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3579999999999743 3468999999999999999999999999999999999997 57999999999997 45
Q ss_pred CHHHHhcccEEEecCCCCCcccHHHHHhcCCC-CCCCHHH-----HHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 468 HLRSLRRHIALVSQEPALFAGTIRENITYGAS-DKIDESE-----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 468 ~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~~~e~-----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
+...+|++++||||+|++|++|++|||.|++. ...++++ +.++++.++++ .++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHH
Confidence 56789999999999999999999999998741 1244444 45567777654 45568899999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChh
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~ 620 (643)
||||+|||||++++|+|||||||||+||+++.+.++++|+++.+++|+|+|||+++++.. ||+|+||++|+|+|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999999889999999999999988 9999999999999999999
Q ss_pred HHhhc
Q 006496 621 SLLAK 625 (643)
Q Consensus 621 eLl~~ 625 (643)
++..+
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99864
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-54 Score=401.02 Aligned_cols=224 Identities=30% Similarity=0.507 Sum_probs=196.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC-CCCHHHHhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR-SHHLRSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~-~~~~~~lr~~i 476 (643)
|+++|++.+|.+ ..+|+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. +.+...+|+++
T Consensus 3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 899999999974 36999999999999999999999999999999999999999999999998764 34788999999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
|+|+|+..||+- |+-||+++++- ...+ +++-.+.|++++|.+-.+..| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999975 99999999851 1122 234456788899888888877 47999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
|||.-+|+++++|||||||||+.-..+.+.++++.+ +.|.|+|||.+...++ ||||+.||+|+|+|+|+|+++..+.+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999988765 5799999999999977 99999999999999999999998633
Q ss_pred CcHHHHHH
Q 006496 628 AGAYYSLV 635 (643)
Q Consensus 628 ~g~y~~l~ 635 (643)
+..-++..
T Consensus 229 ~~R~~~FL 236 (240)
T COG1126 229 SERTRQFL 236 (240)
T ss_pred CHHHHHHH
Confidence 33344433
No 50
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.6e-51 Score=411.79 Aligned_cols=236 Identities=47% Similarity=0.741 Sum_probs=218.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999643 246899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|+||++++|+.|++||+.++. ...+.+++.++++..+++++++.+|.|+++..+..+.+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999863 3356677888889899999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHh
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++. +.+.|+.++++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~~ 236 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA--ENGLYAYLYQL 236 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh--ccChHHHHHhc
Confidence 9999999999999999999999998877899999999999998999999999999999999999997 57889888764
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.9e-51 Score=414.79 Aligned_cols=241 Identities=32% Similarity=0.515 Sum_probs=223.5
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHh
Q 006496 394 IIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 394 ~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr 473 (643)
..+.|+++|++++|+.. ...+|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 35679999999999753 24689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 474 RHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
++++|++|+|.+|++|++||+.+.. ...+++++++++.+++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997652 24567888999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHH
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
++|+++||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. .++.|++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 251 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFAS 251 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHH
Confidence 999999999999999999999999999987778999999999999999999999999999999999999874 5678999
Q ss_pred HHHhh
Q 006496 634 LVSLQ 638 (643)
Q Consensus 634 l~~~q 638 (643)
++..+
T Consensus 252 ~~~~~ 256 (257)
T cd03288 252 LVRTD 256 (257)
T ss_pred HHhcc
Confidence 88765
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-52 Score=405.29 Aligned_cols=229 Identities=34% Similarity=0.502 Sum_probs=198.2
Q ss_pred EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HH
Q 006496 398 IELEDVHFAYPAR--PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SL 472 (643)
Q Consensus 398 I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~l 472 (643)
|+++|||+.|+.. ....+|+|+||+|++||..||+|+||+|||||++++-++-+|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 234689999999999999999999999999999999999999999999999998888765 56
Q ss_pred hcccEEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 473 RRHIALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 473 r~~i~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
|++|++|+|++.|++ -|+.+|+.|... ...+ ++++.+.|+.++|.|.-..-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 699999998531 1122 345677888888887766665 68999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.-+ +-|+++|||.++.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999988876533 6799999999999987 9999999999999999999999
Q ss_pred hcCCCcHHHHHHHh
Q 006496 624 AKGPAGAYYSLVSL 637 (643)
Q Consensus 624 ~~~~~g~y~~l~~~ 637 (643)
.+.+...-++++..
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 86445555556553
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-52 Score=384.32 Aligned_cols=219 Identities=34% Similarity=0.508 Sum_probs=198.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-----cEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK-----GVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~-----G~I~idG~di~~--~~~ 469 (643)
.++++|+++.|.+ ..+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.++|+||-+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999974 368999999999999999999999999999999999999876 999999999876 578
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
-++|+++|.|+|.|--|+.||+||+.||+. ... =||.++++|+.|+||+-+..- +.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHHH
Confidence 999999999999999999999999999952 111 245688899999999988632 34567789999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHh
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|+||||||.-+|+||+||||||||||.+..+|.+.|.++.++.|+|+|||.+.-. +-+|+...+-.|+++|+|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999865 569999999999999999999998
Q ss_pred hc
Q 006496 624 AK 625 (643)
Q Consensus 624 ~~ 625 (643)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 75
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-51 Score=389.50 Aligned_cols=221 Identities=33% Similarity=0.499 Sum_probs=197.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|.|||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhccH--HHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKIDE----SEIIEAGKAANAH--DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~~----e~i~~al~~~~l~--~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
||-|+.-||+ -||.|||++-+. ...+. +++.+.++.++|+ +|....| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999997 599999987631 12343 4567788888886 4777777 46999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhcCEEEEEeCCEEEEEcChhHHhhcC
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNCDIIAVLEQGRVVEEGSHQSLLAKG 626 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 626 (643)
|||..+|+|+++|||++||||-+...+|+-+.+.-+ ++|+|+|||+++. ++-+|||.+|++|+|+.+|+|++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~- 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN- 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-
Confidence 999999999999999999999999999999876544 6999999999986 678999999999999999999999986
Q ss_pred CCcHHHH
Q 006496 627 PAGAYYS 633 (643)
Q Consensus 627 ~~g~y~~ 633 (643)
+...|-+
T Consensus 227 Pan~FV~ 233 (309)
T COG1125 227 PANDFVE 233 (309)
T ss_pred ccHHHHH
Confidence 5555543
No 55
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=399.41 Aligned_cols=236 Identities=54% Similarity=0.797 Sum_probs=218.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. ..+|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999642 35899999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|+|.+|++|++||+.++. ...+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcC-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 3456777888999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHh
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
++||||||++||+++...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.. ..+.|++++.+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~--~~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA--KGGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh--cccHHHHHHhc
Confidence 9999999999999999999999998766889999999999999999999999999999999999987 56778777765
Q ss_pred h
Q 006496 638 Q 638 (643)
Q Consensus 638 q 638 (643)
+
T Consensus 236 ~ 236 (236)
T cd03253 236 Q 236 (236)
T ss_pred C
Confidence 3
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=398.97 Aligned_cols=233 Identities=56% Similarity=0.870 Sum_probs=215.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. ..++++|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 235899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|++.+|+.|++||+.++. ...+.+++.+.++.+++.++++.+|.|+++..+....+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 3356677888899999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHH
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l 634 (643)
++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.. ..+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA--QGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH--cCcchhhh
Confidence 9999999999999999999999999878899999999999999999999999999999999999987 45666554
No 57
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-49 Score=394.54 Aligned_cols=220 Identities=35% Similarity=0.573 Sum_probs=207.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
|.|+++|++++|+.. +.++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 458999999999743 2468999999999999999999999999999999999999999999999999999999899999
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++|+||+|.+|++|++|||.+.. ..+++++.++++..++.+++..+|.|+++..++.+.+||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 3677889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998877899999999999999999999999999999886
No 58
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-49 Score=397.28 Aligned_cols=236 Identities=61% Similarity=0.949 Sum_probs=215.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++....++|+|+||++++||.++|+|++|||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532346899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|++.+|+.|++||+.++. .....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999873 2345677888889999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHH
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVS 636 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~ 636 (643)
++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++.. ..+.+++++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA--QKGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh--cChhHHHHhh
Confidence 9999999999999999999999988777799999999999999999999999999999999999987 4566666654
No 59
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-49 Score=394.92 Aligned_cols=226 Identities=51% Similarity=0.827 Sum_probs=211.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
+.|+++|++++|++. .++++|+||++++||+++|+||+|||||||+++|+|+++|.+|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999632 358999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++|+||++.+|++|++||+.++. ....++++.++++.+++.++++.+|.|+++.++....+||||||||++||||++++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999873 34566788889999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999998877899999999999999999999999999999999999876
No 60
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-46 Score=373.21 Aligned_cols=473 Identities=18% Similarity=0.228 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 122 FFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQ 201 (643)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~ 201 (643)
+.++.++..+.+.+........++....++|.++.++++..|...++ +..+++++.++++|+..+.-. ...++.+.+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~ISf~-~s~lp~~~q 130 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNISFA-FSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhcccccceeeh-HhhhHHHHH
Confidence 33444444445555666667789999999999999999999999998 678999999999999999843 344566778
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHH--H
Q 006496 202 TFSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQER--I 279 (643)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~--~ 279 (643)
..+.++++.+.+.++|+++.++.++.+.+.++..++...+..+.-....+..+++.+..+..++|-++++...--.+ +
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 88888888999999999877766665555555544444444555566677888899999999999999988753322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 280 QKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLILVSTGKVIADAGTMTT 359 (643)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 359 (643)
.+.+...-+..++...+............+++....+.+.+|+....-. -+.....++...+..+-.|+.++....+
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 3333332222222211111111111122333333444445554433222 2222333345555666778999999999
Q ss_pred HHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCH
Q 006496 360 DIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGK 439 (643)
Q Consensus 360 ~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 439 (643)
.+.++..|..++.++...++..+ -+.+...+.+ ..|+++||.|+|++. .--+..||++|++||.|-|+|.+||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcH
Confidence 99999999999987754332211 1111112223 369999999999754 234788999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHH
Q 006496 440 STIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDF 519 (643)
Q Consensus 440 STL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~ 519 (643)
||++++|.|+|.|++|+|.+||.+++.-+++++|+-++-|+-|-|||+.++ |++..++++.+.+-++.-.+..-
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~k 436 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHK 436 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999766 54444788888887777665543
Q ss_pred HHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcc
Q 006496 520 IAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLS 597 (643)
Q Consensus 520 I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~ 597 (643)
.. +-+|--+. ..||-|||.|+|+--|++.+.||++|||=-+--||.-.+.+.+.+...+| +||++.|||+=.
T Consensus 437 ts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 437 TS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred hc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence 32 22232222 46999999999999999999999999999999999999988888765544 799999999999
Q ss_pred hhhhcCEEEEEeCCEEEEEc
Q 006496 598 TIQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 598 ~i~~~D~I~vl~~G~Ive~G 617 (643)
....|||++.|++|+++|.-
T Consensus 511 YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 511 YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhHHHHHHHhcCceeecc
Confidence 99999999999999999863
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.5e-49 Score=410.67 Aligned_cols=228 Identities=29% Similarity=0.457 Sum_probs=195.4
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---LR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---lr 473 (643)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 246999999999999999999999999999999999999999999999999999987655 58
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
++|+||||++.+|+ .|++||+.++.. ...+ ++++.++++.+++.+..+..| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 699999987521 1122 345677888888877655544 479999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||||+.+|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 6899999999999865 99999999999999999999986
Q ss_pred cCCCcHHHHHHH
Q 006496 625 KGPAGAYYSLVS 636 (643)
Q Consensus 625 ~~~~g~y~~l~~ 636 (643)
+.+....++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 422333444443
No 62
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=5.4e-45 Score=393.07 Aligned_cols=475 Identities=17% Similarity=0.146 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCC---cChhHHHHHHHHHHHHHHHHHHH
Q 006496 118 YSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDE---NSSGAICSRLAKDANVVRSLVGD 194 (643)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~---~~~G~i~~r~s~D~~~i~~~~~~ 194 (643)
.+.+|..++.+..++...+.|+...+..+....+...+.++-+.....|+.... +..-..=+|+..|+..+-+....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 345566666667777778888888899999999999999998887755543111 00112236999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 195 RVALLVQTFSSITIAFTMSLII---------------SWRLALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKL 259 (643)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (643)
+...++..+.+++...++++-. ...+.+++++.+++.-++.+++++.+.+.+-+..+.-+.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 7777888887776666555522 1222333333333333344455555555555555555555555
Q ss_pred HHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 006496 260 AAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFE 339 (643)
Q Consensus 260 ~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~ 339 (643)
..-.-++.+.|-.|+.|+.+.++.++..........+.......+..+......++.++-+..++-....|.++.|.+..
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 56677889999999999888777666555543332222222222222222333333344444555567799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--CCCCCCCCCCC-----CCCccccEEEEeEEEECCCCCC
Q 006496 340 IFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHT--KIDPDDLNGYQ-----PEKIIGHIELEDVHFAYPARPN 412 (643)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~--~~~~~~~~~~~-----~~~~~~~I~~~nvsf~Y~~~~~ 412 (643)
....+......++.+...+..+..-.+...|+.++.+... +.+........ .......|+++|++..-|+..
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~- 406 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ- 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-
Confidence 9888888888888888888899998999999877753321 10011110000 010145799999999998753
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRE 492 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTire 492 (643)
..+++++|++++||.+-|.|+||||||||+++|.|+++--+|+|..-.. +.+-|+||.|++=.||+||
T Consensus 407 -~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 407 -TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred -eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHH
Confidence 6799999999999999999999999999999999999999999887521 2389999999999999999
Q ss_pred HHhcCCCC-CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHH
Q 006496 493 NITYGASD-KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ 571 (643)
Q Consensus 493 Ni~~g~~~-~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~ 571 (643)
=|+|-... +++|+++.++|.+|+|.++++++.+ .+. -..-||+|||||||+||.++++|++++|||+|||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99996433 3899999999999999999999843 333 34569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC
Q 006496 572 SEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 572 te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
+|..+.+.+++.+++.|+|.|.||.....-.++.+-+++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999988887887766653
No 63
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.9e-48 Score=385.21 Aligned_cols=220 Identities=42% Similarity=0.714 Sum_probs=203.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2468999999999999999999999999999999999999999999999999988888888899
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++|++|++.+|+.|++||+.++. ...+++++.++++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998863 33456788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEc
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G 617 (643)
|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999887678999999999998889999999999998765
No 64
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-48 Score=402.35 Aligned_cols=221 Identities=25% Similarity=0.481 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC-------
Q 006496 397 HIELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH------- 467 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~------- 467 (643)
.|+++|++|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccc-cccCCC
Q 006496 468 ---------HLRSLRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDR 534 (643)
Q Consensus 468 ---------~~~~lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~ 534 (643)
+...+|++++||+|+| .+|++|++|||.++.. ...++++..+ . ..++++.+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998731 1234433322 1 12344444 453 346677
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCE
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGR 612 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~ 612 (643)
+.+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.+.. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 478999999999987 5699999999999
Q ss_pred EEEEcChhHHhh
Q 006496 613 VVEEGSHQSLLA 624 (643)
Q Consensus 613 Ive~G~~~eLl~ 624 (643)
|++.|+++++..
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999998764
No 65
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-48 Score=382.23 Aligned_cols=214 Identities=33% Similarity=0.482 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.++++|++|+|++ +++|+|+||+|++||.++|+||+|||||||+++|.|+.+|.+|+|.+||+++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-CCcccHHHHHhcCCCCC---------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 477 ALVSQEPA-LFAGTIRENITYGASDK---------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 477 ~~v~Q~p~-lf~gTireNi~~g~~~~---------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+||||++. -|.-|++|=+.+|+.+. .|++.+.+|++.+++.++.++. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 99999965 55669999999996431 1334578889999999886542 3 35999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
.|||||..+|+||+||||||+||....-.+++.++++.+ ++|+|+|.|.++. .+.||++++|++|+|+..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999998764 5999999999976 5789999999999999999999998
Q ss_pred h
Q 006496 624 A 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 5
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=380.82 Aligned_cols=215 Identities=33% Similarity=0.589 Sum_probs=196.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC-CCCHHHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR-SHHLRSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~-~~~~~~lr~~ 475 (643)
-|+++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred cEEEecCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 476 IALVSQEP--ALFAGTIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 476 i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++||.|+| .+|..||.|.+.||+. ...++ +++.++++.+++.++.+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 7999999999999962 23444 35778899999988855544 5799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~--~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|.+|..+|++||||||||+||+...+.+.+.++++.++ +|+|+|||+++.+.. ||++++|++|+++.+|+|+++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999999999998665 699999999999987 99999999999999999999987
No 67
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-48 Score=348.47 Aligned_cols=210 Identities=33% Similarity=0.526 Sum_probs=187.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|.+++|.|+|...+ -..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 57889999996431 468899999999999999999999999999999999999999999999887764 46699
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDK-----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~-----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
.++||.-||.- ||++||.+|..|. .+.+++..++.++|+..+.+.||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999975 9999999996443 245789999999999999999994 699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
++|+.|||+||||+||||+.-...+...+.++. ++.|+++|||+++.++ .+|+++++++|||++.|.-+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998887777776554 3579999999999865 5999999999999999999999973
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-48 Score=392.88 Aligned_cols=218 Identities=33% Similarity=0.523 Sum_probs=195.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++||+.+|++. .+++|+||+|+.||+++++||||||||||+++|+|+.+|++|+|.|||.|+.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999743 1899999999999999999999999999999999999999999999999999999876 789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD-----KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~-----~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
++|+|+.-||+- ||+|||.|+..- +--++++.++++..++.+.++..| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999986 999999998521 112678999999999999999888 469999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||.++|++++||||+|+||++....+...|+++.+ +.|+|.|||+.... .-+|||.||++|+|.+.|+|.|+.++ +
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~-P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER-P 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC-c
Confidence 99999999999999999999999988888877544 47999999997665 56999999999999999999999975 5
Q ss_pred CcHH
Q 006496 628 AGAY 631 (643)
Q Consensus 628 ~g~y 631 (643)
...|
T Consensus 226 ~n~f 229 (338)
T COG3839 226 ANLF 229 (338)
T ss_pred cchh
Confidence 4444
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-48 Score=385.94 Aligned_cols=213 Identities=35% Similarity=0.516 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH---HHHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL---RSLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~---~~lr~ 474 (643)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 358999999999999999999999999999999999999999999999999988765 56889
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
.++||||++.+|++ |++||+.++.. ...+. +++.++++.+++.++.... ..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-----------PAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999999999986 99999987521 11232 3455666766665544332 2479999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++++|+|+||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988754 6899999999998865 99999999999999999999986
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-47 Score=382.06 Aligned_cols=219 Identities=48% Similarity=0.784 Sum_probs=200.1
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHh
Q 006496 394 IIGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 394 ~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr 473 (643)
..+.|+++|++++|++....++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753224689999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 474 RHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+.++|++|++.+|++|++||+.++. ...+.+++++..+...++++++.+|.|+++.+.+...+||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 234455666777778889999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEE
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRV 613 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~I 613 (643)
++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988777899999999999999999999999975
No 71
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-47 Score=368.95 Aligned_cols=207 Identities=34% Similarity=0.479 Sum_probs=178.2
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---H-
Q 006496 398 IELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---L- 472 (643)
Q Consensus 398 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---l- 472 (643)
++++||+..|... ....+|+++||+|++||.|||+||||||||||+++|.|+-.|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6799999999643 2246899999999999999999999999999999999999999999999999999998544 4
Q ss_pred hcccEEEecCCCCCcc-cHHHHHhc----CCCCC-CCHHHHHHHHHHhccHHHHH-hcccccccccCCCCCCCChhHHHH
Q 006496 473 RRHIALVSQEPALFAG-TIRENITY----GASDK-IDESEIIEAGKAANAHDFIA-GLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 473 r~~i~~v~Q~p~lf~g-TireNi~~----g~~~~-~~~e~i~~al~~~~l~~~I~-~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
|++||||+|+..|++. |++|||.+ ..... ..+++..+.++.+++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5669999999999986 99999984 21111 12455667777778776655 444 4799999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVE 615 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive 615 (643)
+||||||+.+|+|++.||||+|||.++.+.|.+.+++..+ ++|+|+|||+......|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999988744 679999999999999999999999999543
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.4e-48 Score=383.72 Aligned_cols=213 Identities=39% Similarity=0.586 Sum_probs=186.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC-----CCCCcEEEECCeeCCCCC--HH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY-----DPLKGVVKIDGRDIRSHH--LR 470 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~-----~~~~G~I~idG~di~~~~--~~ 470 (643)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999643 5899999999999999999999999999999999999 999999999999998877 56
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGAS-DKI-----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
.+|++++|+||++.+|+.|++||+.++.. ... .++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 78899999999999998899999987521 011 13466778888887666544321 4579999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998866689999999999876 5999999999999999998764
No 73
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-47 Score=383.55 Aligned_cols=219 Identities=31% Similarity=0.526 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEECCeeCCCCCHHHHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~---~~~G~I~idG~di~~~~~~~lr 473 (643)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 358999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cccEEEecCCCCCcccHHHHHhcCCC-------CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEPALFAGTIRENITYGAS-------DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~gTireNi~~g~~-------~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+.++|+||+|.+|+.|++||+.++.. ....++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 011234567788888887665432 3445678999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
+||||++++|+++||||||++||+++...+.+.|.+..+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999875 5999999999999999999999863
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-47 Score=389.88 Aligned_cols=217 Identities=28% Similarity=0.482 Sum_probs=192.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999742223589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEPA--LFAGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p~--lf~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+||+|+|. ++..|++|||.++.. ...+ ++++.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 667799999998731 1123 345788888888887766554 47999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999999988754 789999999999998899999999999999999999876
No 75
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-47 Score=360.47 Aligned_cols=225 Identities=33% Similarity=0.484 Sum_probs=196.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr 473 (643)
.|++++|+++|.+ ..|++||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999999875 469
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCC--CCCCCHHHHHH----HHHHhccHHH-HHhcccccccccCCCCCCCChhHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGA--SDKIDESEIIE----AGKAANAHDF-IAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~--~~~~~~e~i~~----al~~~~l~~~-I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
+++|+++|+.-||+. ||+||+.|-. ....+++.+++ -|+.|+|... .+.+| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999987 9999999842 12345555544 4677888777 45556 4699999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
.|||||+.-||+|+++|||||+|||.+...+.+-|+++.+ +.|+|+|||+++++.. ||||+++.+|+|+.+|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999988888877654 6899999999999865 799999999999999999999
Q ss_pred hhcCCCcHHHHHHH
Q 006496 623 LAKGPAGAYYSLVS 636 (643)
Q Consensus 623 l~~~~~g~y~~l~~ 636 (643)
.+. .+...++++.
T Consensus 234 ~~s-d~P~v~qf~~ 246 (263)
T COG1127 234 LAS-DDPWVRQFFN 246 (263)
T ss_pred HhC-CCHHHHHHhc
Confidence 985 5666666654
No 76
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=368.12 Aligned_cols=196 Identities=33% Similarity=0.470 Sum_probs=175.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.+++++|+.+|+. ..+|+|+||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999975 4699999999999999999999999999999999999999999999999987433 3469
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-C----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDK-I----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~-~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.||+= |++||+.++.... . ..++..++++.++|.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 999999999996 9999999985311 1 2456889999999999988888 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCcch-hhhcCEEEEEeCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLST-IQNCDIIAVLEQG 611 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~--~TvI~ItHrl~~-i~~~D~I~vl~~G 611 (643)
||..+|+||+||||++|||+.|...+|+-+.+..++ +|+++|||..+. +.-+|||+||.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999887654 999999999987 5679999999994
No 77
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-47 Score=361.68 Aligned_cols=226 Identities=31% Similarity=0.499 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC-HHHHhc
Q 006496 397 HIELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH-LRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~-~~~lr~ 474 (643)
-++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999997542 125899999999999999999999999999999999999999999999998766544 346788
Q ss_pred ccEEEecCCC-CCc--ccHHHHH----hcCCCCCCCHHHHHHHHHHhccHH-HHHhcccccccccCCCCCCCChhHHHHH
Q 006496 475 HIALVSQEPA-LFA--GTIRENI----TYGASDKIDESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 475 ~i~~v~Q~p~-lf~--gTireNi----~~g~~~~~~~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
.+-+|+|||. =++ -||++=| ..+. -+-.+++++++++.++|.+ |....| ..|||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~-~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHG-LSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCC-ccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 8999999998 222 2555444 3321 1123567999999999975 444555 46999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCc--eEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER--TSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~--TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
||||||.-+|++||||||||+||....+.|.+.+.++.+++ |.|+|||+++.+.. ||||+||++|+|+|.++-+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999888776 99999999999976 9999999999999999999999
Q ss_pred hcCCCcHHHHHH
Q 006496 624 AKGPAGAYYSLV 635 (643)
Q Consensus 624 ~~~~~g~y~~l~ 635 (643)
.. +...|.+..
T Consensus 231 ~~-~~h~ytr~L 241 (252)
T COG1124 231 SH-PSHPYTREL 241 (252)
T ss_pred cC-CccHHHHHH
Confidence 75 555676643
No 78
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=377.92 Aligned_cols=224 Identities=34% Similarity=0.550 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+..++|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhccH-HHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEPALFAGTIRENITYGAS-DKIDESEIIEAGKAANAH-DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g~~-~~~~~e~i~~al~~~~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
+|+||+|.+|+.|++||+.++.. ....++++.++++..++. +.. ......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987631 112244566667766663 222 23456799999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCCCcHH
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGPAGAY 631 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y 631 (643)
+|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++... +...|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~ 227 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEV 227 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHH
Confidence 9999999999999999999999999988753 7899999999999865 999999999999999999999863 44456
Q ss_pred HHHH
Q 006496 632 YSLV 635 (643)
Q Consensus 632 ~~l~ 635 (643)
.+.+
T Consensus 228 ~~~~ 231 (241)
T PRK14250 228 TKLF 231 (241)
T ss_pred HHHH
Confidence 5544
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-47 Score=396.98 Aligned_cols=228 Identities=32% Similarity=0.488 Sum_probs=190.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---LR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---lr 473 (643)
|+++|++++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
++++||||++.+|+ .|++||+.++.. ...++ +++.++++..++.++... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999997 699999987521 11222 345566666666554433 33579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||||+++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998754 6899999999999865 99999999999999999999986
Q ss_pred cCCCcHHHHHHH
Q 006496 625 KGPAGAYYSLVS 636 (643)
Q Consensus 625 ~~~~g~y~~l~~ 636 (643)
+......+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 422233333443
No 80
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-47 Score=368.37 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++|+|.++ ++|+||||++++|++++|+||+|||||||+++++|+.+|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 49999999999643 59999999999999999999999999999999999999999999999998776543 5789
Q ss_pred EEEecCC---CCCcccHHHHHhcCCCCC---------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 477 ALVSQEP---ALFAGTIRENITYGASDK---------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 477 ~~v~Q~p---~lf~gTireNi~~g~~~~---------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
|||||.. +=|+-||+|=+.+|.... .+.+++.+||+.+++.++.+ -+||| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 9999955 578899999999984222 23588999999999998853 45664 9999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
|+.|||||..+|++|+|||||+++|+.++..|.+.|.++.+ +|||++|||+++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999988866 7999999999999854 99999995 678889999999
Q ss_pred hhcCCCcHHHHHHH
Q 006496 623 LAKGPAGAYYSLVS 636 (643)
Q Consensus 623 l~~~~~g~y~~l~~ 636 (643)
+. ...+.+.+.
T Consensus 226 ~~---~~~l~~~~g 236 (254)
T COG1121 226 LT---EENLEKAFG 236 (254)
T ss_pred cC---HHHHHHHhC
Confidence 86 233444443
No 81
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-46 Score=368.83 Aligned_cols=203 Identities=36% Similarity=0.598 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
+.|+++|++++|++. ..++++|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++.+.+..++|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999743 2368999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++|+||+|.+|++|++||+.+.. ..+++++.++++ ++.....|||||+||++||||++++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999998652 345555555443 2456678999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcCh
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~ 619 (643)
|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999988999999999999998874
No 82
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.6e-47 Score=398.21 Aligned_cols=208 Identities=31% Similarity=0.478 Sum_probs=182.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH----hcccEEEecCCCCCcc
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL----RRHIALVSQEPALFAG 488 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l----r~~i~~v~Q~p~lf~g 488 (643)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+..++..++ |++++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999999888 7899999999999985
Q ss_pred -cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 006496 489 -TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562 (643)
Q Consensus 489 -TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLD 562 (643)
|++|||.++.. ...+ ++++.++|+.++|+++....| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999998631 1122 356677888888876665554 479999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHH
Q 006496 563 EATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYY 632 (643)
Q Consensus 563 E~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~ 632 (643)
||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+ +.||+|++|++|+|++.|++++++.+ +...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~-p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN-PANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC-cccHHH
Confidence 99999999999999999987643 78999999999975 56999999999999999999999875 333343
No 83
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.3e-46 Score=379.97 Aligned_cols=223 Identities=35% Similarity=0.542 Sum_probs=190.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEECCeeCCCC--CHH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGRDIRSH--HLR 470 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~-----~G~I~idG~di~~~--~~~ 470 (643)
|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999743 5899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCC-CC-CC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGAS-DK-ID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~-~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
.+|++++|+||++.+|+.|++||+.++.. .. .+ ++++.++++..++.+++.. .......+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHH
Confidence 77899999999999999999999987521 11 12 2456677777777644421 123344679999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|++||||++++|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877789999999999875 59999999999999999999998
Q ss_pred hcCCCcHH
Q 006496 624 AKGPAGAY 631 (643)
Q Consensus 624 ~~~~~g~y 631 (643)
.+ +...+
T Consensus 232 ~~-~~~~~ 238 (247)
T TIGR00972 232 TN-PKEKR 238 (247)
T ss_pred hC-CCChH
Confidence 64 33434
No 84
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=396.07 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ +..+|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.++++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 23589999999999999999999999999999999999999999999999999988764 4789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+ .|++|||.|+.. ...+ ++++.++++.+++.++.+..| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998732 1122 245778899999988877766 379999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++++.++ +
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~-p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK-P 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC-C
Confidence 99999999999999999999999999999988755 68999999999876 46999999999999999999999875 4
Q ss_pred CcHHH
Q 006496 628 AGAYY 632 (643)
Q Consensus 628 ~g~y~ 632 (643)
...|.
T Consensus 227 ~~~~~ 231 (356)
T PRK11650 227 ASTFV 231 (356)
T ss_pred ccHHH
Confidence 44443
No 85
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=395.06 Aligned_cols=218 Identities=30% Similarity=0.511 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++++
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 358999999999999999999999999999999999999999999999999988764 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999998731 1122 356778888888877655544 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ .-||+|++|++|+|++.|+++++..+ +
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~-p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ-P 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999988765 68999999999987 55999999999999999999999875 4
Q ss_pred CcHH
Q 006496 628 AGAY 631 (643)
Q Consensus 628 ~g~y 631 (643)
...|
T Consensus 229 ~~~~ 232 (351)
T PRK11432 229 ASRF 232 (351)
T ss_pred CchH
Confidence 4443
No 86
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=380.54 Aligned_cols=226 Identities=33% Similarity=0.470 Sum_probs=192.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~~ 469 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 4999999999964 3589999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCC-C-CC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASD-K-ID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~-~-~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||++.+|+.|++|||.++... . .+ ++++.++++.+++.+.+ ++.+++. ..+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHH
Confidence 6788999999999999999999999876311 1 11 34567777777775433 3344553 567999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999875 4999999999999999999999
Q ss_pred hhcCCCcHHHH
Q 006496 623 LAKGPAGAYYS 633 (643)
Q Consensus 623 l~~~~~g~y~~ 633 (643)
..+ +...|.+
T Consensus 237 ~~~-~~~~~~~ 246 (254)
T PRK14273 237 FFN-PKNTKTE 246 (254)
T ss_pred HhC-CCChHHH
Confidence 864 3444443
No 87
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=380.27 Aligned_cols=219 Identities=31% Similarity=0.517 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999964 358999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CC-----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DK-----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~-----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||++.+|+.|++||+.++.. .. ..++++.++++.+++.+++.. ..+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 123567778888887655432 23445668999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998866789999999999885 5999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 864
No 88
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-45 Score=376.83 Aligned_cols=219 Identities=30% Similarity=0.456 Sum_probs=197.1
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 395 IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 395 ~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
.+.|+++|+++.. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~------------ 99 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE------------
Confidence 3469999999962 25899999999999999999999999999999999999999999999994
Q ss_pred ccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 475 HIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 475 ~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
++|++|++.+|++|++||+.++. ...+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++||||+++
T Consensus 100 -i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 100 -ISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999873 244567788889899999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHH-HHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHH
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEA-LERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~-i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
+|++|||||||++||+++...+.+. ++...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....|.+
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~--~~~~~~~ 254 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS--LRPDFSS 254 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh--cchHHHH
Confidence 9999999999999999999888765 455556799999999999999999999999999999999999986 3445665
Q ss_pred HH
Q 006496 634 LV 635 (643)
Q Consensus 634 l~ 635 (643)
.+
T Consensus 255 ~~ 256 (282)
T cd03291 255 KL 256 (282)
T ss_pred HH
Confidence 44
No 89
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.1e-47 Score=345.26 Aligned_cols=209 Identities=32% Similarity=0.446 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr~ 474 (643)
|+|+||+.+|++. .++|+||||+|++||++-++||||||||||+++|.+...|+.|+|.++|.|++.+.-. -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999875 4689999999999999999999999999999999999999999999999999988765 5899
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCC-----CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGA-----SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~-----~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
+||+|+||..|... |+.||++|.. ++..=.+++.++|+.++|.+-...|| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 99999999998875 9999999852 11112457888999999999999998 4799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcCh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~ 619 (643)
|||+..+|++||-||||-+||+++...|++.+.+.- .+-||++.||..+.+.. -.|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999988763 47889999999999976 468999999999876554
No 90
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=379.41 Aligned_cols=220 Identities=31% Similarity=0.524 Sum_probs=190.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~ 468 (643)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999964 358999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|++++|++|++.+|+.|++||+.++.. ...+ +++++++++.+++.+.+. ....+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 6778999999999999999999999987521 1122 245677788877754443 23445567899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
|||++||||++++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999885 599999999999999999999
Q ss_pred Hhhc
Q 006496 622 LLAK 625 (643)
Q Consensus 622 Ll~~ 625 (643)
+...
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 9863
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.8e-46 Score=372.44 Aligned_cols=212 Identities=26% Similarity=0.443 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++||+++|++. ..++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 14689999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALF-AGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf-~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|++|++.+| ..|++||+.+... ...+ ++++.++++..++.+.. ++. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hCh----hhhCCHHHHHHHHHHHH
Confidence 999999999 5799999986421 1112 24566677777665443 233 24699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999865 999999999999999999875
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=376.73 Aligned_cols=212 Identities=31% Similarity=0.448 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 358999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC-CC----C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGASD-KI----D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~~-~~----~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
|+||+|.+|+ .|++||+.++... .. + ++++.++++..++.++.... ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999996 5999999876210 11 1 23455666766665544433 3579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988754 689999999999875 499999999999999999999986
Q ss_pred c
Q 006496 625 K 625 (643)
Q Consensus 625 ~ 625 (643)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 3
No 93
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=383.14 Aligned_cols=225 Identities=32% Similarity=0.482 Sum_probs=189.7
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH----hc
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL----RR 474 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l----r~ 474 (643)
.++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 358999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFA-GTIRENITYGAS-DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~~-~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
+++|+||++.+|+ .|++||+.++.. ... .++++.++++.+++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999995 699999987421 011 2346778888888877766655 3699999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
|||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|++++++++
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 689999999999875 5999999999999999999999864
Q ss_pred CCCcHHHH-HHHhh
Q 006496 626 GPAGAYYS-LVSLQ 638 (643)
Q Consensus 626 ~~~g~y~~-l~~~q 638 (643)
+...|.+ +....
T Consensus 252 -~~~~~~~~~~~~~ 264 (269)
T cd03294 252 -PANDYVREFFRGV 264 (269)
T ss_pred -cCcHHHHHHHhhC
Confidence 4444544 44433
No 94
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-46 Score=383.26 Aligned_cols=215 Identities=29% Similarity=0.525 Sum_probs=192.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++||+++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999642 345899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCC--CCCcccHHHHHhcCCCC-CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 478 LVSQEP--ALFAGTIRENITYGASD-KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 478 ~v~Q~p--~lf~gTireNi~~g~~~-~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
|++|+| .+++.|++|||.++... ..+ ++++.++++.+++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 46778999999875211 123 245777888888888777665 379999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|++.+|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998764 689999999999999999999999999999999998875
No 95
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-46 Score=366.40 Aligned_cols=200 Identities=36% Similarity=0.564 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 398 IELEDVHFAYPARPN--VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
|+++||+++|++..+ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 4
Q ss_pred cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 476 IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 476 i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
++|+||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|++|.+++.+.+||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999873 3566788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHH-HHHHHcC-CceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 556 PAVLLLDEATSALDSQSEKVVQE-ALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~-~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
|+++||||||++||+++.+.+.+ .++...+ ++|+|++||+++.+..||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999887766 5565533 589999999999998899999999985
No 96
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=382.61 Aligned_cols=214 Identities=35% Similarity=0.572 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 38999999999632 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEP--ALFAGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p--~lf~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+|++|+| .+|..|++||+.++.. ...+ ++++.++++.+++.++....| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999998631 1122 346778888888887766655 36999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|||+++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 999999999999999999999999999999988743 78999999999998 469999999999999999987653
No 97
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-46 Score=372.17 Aligned_cols=204 Identities=30% Similarity=0.485 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr~ 474 (643)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 23589999999999999999999999999999999999999999999999999877643 4788
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFA-GTIRENITYGAS-----DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~~-----~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
+++|+||+|.+|. .|++||+.++.. ....++++.++++.+++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 599999987410 1112456788888888877665544 3699999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
|||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999988643 6899999999999875 899999999975
No 98
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=384.18 Aligned_cols=218 Identities=29% Similarity=0.510 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC--HHHHh
Q 006496 398 IELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH--LRSLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~--~~~lr 473 (643)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEecCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEP--ALFAGTIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
++++||||+| .+|+.|++|||.++.. ...+++ ++.++++.+++.. .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999998631 123433 4566666666640 1223344568999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988754 689999999999874 69999999999999999999986
Q ss_pred h
Q 006496 624 A 624 (643)
Q Consensus 624 ~ 624 (643)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 99
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=385.71 Aligned_cols=219 Identities=33% Similarity=0.523 Sum_probs=195.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++||+.+|. +..+++|+||+|++||++++.|||||||||++++|+||..|++|+|.+||.|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999997 34689999999999999999999999999999999999999999999999999998764 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
++|+|+--||+ -||+|||.||.. .... ++++.++++.++|.++-...| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999997 599999999953 1122 247899999999999888777 47999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhcCEEEEEeCCEEEEEcChhHHhhcC
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNCDIIAVLEQGRVVEEGSHQSLLAKG 626 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 626 (643)
|||..+|++|+||||.||||.+....++.-+++..+ +.|.|.|||+-+. +.-+|||+||++|+|...|+|+|+...
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~- 227 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER- 227 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC-
Confidence 999999999999999999999999888888876543 6899999999765 678999999999999999999999985
Q ss_pred CCcHHH
Q 006496 627 PAGAYY 632 (643)
Q Consensus 627 ~~g~y~ 632 (643)
+...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 555554
No 100
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-46 Score=375.87 Aligned_cols=214 Identities=35% Similarity=0.511 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC---HHHHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH---LRSLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~---~~~lr~ 474 (643)
++++|++++|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 35899999999999999999999999999999999999999999999999998877 467888
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 HIALVSQEPALFA-GTIRENITYGASD-------------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~~~-------------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
.++|+||++.+|. .|++||+.++... ...++++.++++..++.+. ......+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 9999999999887 6999999875210 1123345556666655443 3344568999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
|||||++||||++++|+|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999998753 789999999999987 69999999999999999
Q ss_pred ChhHHhh
Q 006496 618 SHQSLLA 624 (643)
Q Consensus 618 ~~~eLl~ 624 (643)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999743
No 101
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.1e-46 Score=391.82 Aligned_cols=218 Identities=28% Similarity=0.445 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+ .|++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998731 1122 345667777777766554443 579999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+ .-||+|++|++|+|++.|+++++.++ +
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999988755 68999999999986 55999999999999999999999975 4
Q ss_pred CcHH
Q 006496 628 AGAY 631 (643)
Q Consensus 628 ~g~y 631 (643)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 4444
No 102
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=384.85 Aligned_cols=216 Identities=26% Similarity=0.490 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC----CCHHH
Q 006496 398 IELEDVHFAYPARPN--VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS----HHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~----~~~~~ 471 (643)
|+++||+|+|+.... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974311 258999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEecCC--CCCcccHHHHHhcCCCC-CCCH----HHHHHHHHHhccH-HHHHhcccccccccCCCCCCCChhHH
Q 006496 472 LRRHIALVSQEP--ALFAGTIRENITYGASD-KIDE----SEIIEAGKAANAH-DFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 472 lr~~i~~v~Q~p--~lf~gTireNi~~g~~~-~~~~----e~i~~al~~~~l~-~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
+|++++||+|+| .+|+.|+.||+.|+... ..+. +++.++++.+++. ++. .....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 899999999998 79999999999987411 1232 3455666666663 232 233468999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 3789999999999874 699999999999999999999
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
No 103
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.7e-46 Score=375.89 Aligned_cols=213 Identities=32% Similarity=0.487 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH---HHHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL---RSLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~---~~lr~ 474 (643)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2358999999999999999999999999999999999999999999999999987764 34788
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 HIALVSQEPALFA-GTIRENITYGASD-------------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~~~-------------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
+++|+||++.+|+ .|++||+.++... ...++++.++++..++.++. .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 9999999999987 5999999875211 01133556666666665443 334567999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
|||||++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988753 689999999999985 59999999999999999
Q ss_pred ChhHHh
Q 006496 618 SHQSLL 623 (643)
Q Consensus 618 ~~~eLl 623 (643)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 104
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=379.03 Aligned_cols=220 Identities=30% Similarity=0.480 Sum_probs=190.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~ 468 (643)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999963 3589999999999999999999999999999999999975 89999999999875 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC--C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS-DKI--D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~--~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
...+|++++|++|+|.+|+.|++||+.++.. ... + ++++.++++.+++.+++.. .......+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHH
Confidence 6678999999999999999999999987521 011 1 3456778888887655432 233445689999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChh
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 620 (643)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||++++|++|+|++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999985 58999999999999999999
Q ss_pred HHhhc
Q 006496 621 SLLAK 625 (643)
Q Consensus 621 eLl~~ 625 (643)
++..+
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 99863
No 105
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=377.94 Aligned_cols=228 Identities=30% Similarity=0.448 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCC--CCCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIR--SHHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~--~~~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 3899999999964 3589999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcccEEEecCCCCCcc-cHHHHHhcCCC-CCC--C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 470 RSLRRHIALVSQEPALFAG-TIRENITYGAS-DKI--D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~--~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
..+|++++|+||++.+|++ |++||+.++.. ... + ++++.++++..++.+++.. .......+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6789999999999999976 99999987521 011 1 2356667777776544322 233445689999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChh
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~ 620 (643)
||||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999764 9999999999999999999
Q ss_pred HHhhcCCCcHHHHHH
Q 006496 621 SLLAKGPAGAYYSLV 635 (643)
Q Consensus 621 eLl~~~~~g~y~~l~ 635 (643)
++.+. +...|.+.+
T Consensus 234 ~~~~~-~~~~~~~~~ 247 (253)
T PRK14267 234 KVFEN-PEHELTEKY 247 (253)
T ss_pred HHHhC-CCcHHHHHH
Confidence 99863 333354433
No 106
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.4e-46 Score=374.44 Aligned_cols=217 Identities=29% Similarity=0.481 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~i 476 (643)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 358999999999999999999999999999999999999999999999999998887654 6779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-C----------CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDK-I----------DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~-~----------~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
+|+||++.+|++ |++||+.++.... . ..++.. ..+.+.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 9999998763110 0 011111 1123334433 4444455556789999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++||||++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998865 57899999999999865 999999999999999999998
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
+.
T Consensus 231 ~~ 232 (236)
T cd03219 231 RN 232 (236)
T ss_pred cc
Confidence 75
No 107
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-46 Score=379.24 Aligned_cols=217 Identities=31% Similarity=0.539 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEP--ALFAGTIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p--~lf~gTireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+|++|+| .+++.|+.|||.++.. ...++ +++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999987521 12333 3456778888887665443 357999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988764 689999999999998999999999999999999999876
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-46 Score=373.72 Aligned_cols=217 Identities=33% Similarity=0.482 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 35899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|+ .|++||+.++.. ...+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999987521 1112 234445555555432 012344457899999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 789999999999764 5999999999999999999999764
No 109
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.9e-46 Score=389.68 Aligned_cols=217 Identities=30% Similarity=0.487 Sum_probs=189.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .+++++
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 899999999964 358999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC-----CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASD-----KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~-----~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
||+|++.+|+. |++||+.++... ..+ ++++.++++.+++.++.+..| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999987310 122 346677788888876655444 479999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988765 589999999999865 599999999999999999999987
Q ss_pred cCCCcHH
Q 006496 625 KGPAGAY 631 (643)
Q Consensus 625 ~~~~g~y 631 (643)
+ +...|
T Consensus 227 ~-p~~~~ 232 (353)
T PRK10851 227 E-PATRF 232 (353)
T ss_pred C-ccchH
Confidence 4 43334
No 110
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-46 Score=371.02 Aligned_cols=210 Identities=28% Similarity=0.398 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---LR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---lr 473 (643)
++++||+|+|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 89999999997431 146899999999999999999999999999999999999999999999999999887654 33
Q ss_pred -cccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 -RHIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 -~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+.++|+||+|.+|+. |++||+.++.. ...+ ++++.++++..++.+.. .....+||||||||+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qrl 154 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQRV 154 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 679999999999976 99999987310 0122 23456666666654443 333467999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
+||||++.+|+||||||||++||+++...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998874 3789999999999999999999999999998876
No 111
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-46 Score=381.54 Aligned_cols=220 Identities=31% Similarity=0.552 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC----CHHH
Q 006496 398 IELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH----HLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~----~~~~ 471 (643)
|+++|++|+|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999997432 13699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhcccEEEecCC--CCCcccHHHHHhcCCCC-CCCHHHHHHHHHHhccHHHHHhccccccc-ccCCCCCCCChhHHHHHH
Q 006496 472 LRRHIALVSQEP--ALFAGTIRENITYGASD-KIDESEIIEAGKAANAHDFIAGLYEGYDT-WCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 472 lr~~i~~v~Q~p--~lf~gTireNi~~g~~~-~~~~e~i~~al~~~~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRia 547 (643)
+|++|+||||+| .+|+.|++|||.++... ..+.++..+. +.+.++.+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 68989999999987311 2343333221 12233332 5543 234556789999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 3789999999999875 699999999999999999999876
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-45 Score=370.15 Aligned_cols=227 Identities=29% Similarity=0.475 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 35899999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEecCCCCC-cccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 478 LVSQEPALF-AGTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 478 ~v~Q~p~lf-~gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
|+||++.+| ..|++||+.++.. ...+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999884 6799999987521 1122222111 112233332 444445555668999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHH
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.++.+...+.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEA 230 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHH
Confidence 99999999999999999999999998875 3789999999999998899999999999999999999986322223444
Q ss_pred HH
Q 006496 634 LV 635 (643)
Q Consensus 634 l~ 635 (643)
.+
T Consensus 231 ~~ 232 (236)
T TIGR03864 231 AF 232 (236)
T ss_pred HH
Confidence 44
No 113
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-46 Score=352.17 Aligned_cols=215 Identities=31% Similarity=0.483 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC---HHHHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH---LRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~---~~~lr 473 (643)
.|+++||+..||++ ..+|+||||+|++||+|||+|+||||||||+++|.|+.+|++|+|.++|.++..+. +..+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999854 46899999999999999999999999999999999999999999999999999888 56789
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCCCC----------CCH---HHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGASDK----------IDE---SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~~~----------~~~---e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
++||+++|++-|-+. |+-+|+..|.... ++. .+..++|+.+++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 999999999999976 9999998874211 233 34566778887776543 3446899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEE 616 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~ 616 (643)
|||+||++|||||..+|+|++-|||+|+|||++.+.|++.|++.. .+.|+|+.-|.++..+ .||||+=|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 3689999999999975 5999999999999999
Q ss_pred cChhHHhh
Q 006496 617 GSHQSLLA 624 (643)
Q Consensus 617 G~~~eLl~ 624 (643)
|+++||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999654
No 114
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-46 Score=371.52 Aligned_cols=216 Identities=35% Similarity=0.523 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr 473 (643)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12689999999999999999999999999999999999999999999999999887654 357
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
++++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+..+.. ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 88999999999997 599999987521 1122 33566667777666554443 3579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 6899999999999865 99999999999999999999875
No 115
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-46 Score=368.19 Aligned_cols=204 Identities=35% Similarity=0.538 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999964 35899999999999999999999999999999999999999999999999998654 3577899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999886 599999987521 1112 235667777777766554443 4799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988753 789999999999875 49999999999999876
No 116
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-46 Score=374.60 Aligned_cols=228 Identities=31% Similarity=0.453 Sum_probs=193.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCCCHHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~~~~~ 471 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999964 3589999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhcccEEEecCCCCC-cccHHHHHhcCCC-CC--CC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 472 LRRHIALVSQEPALF-AGTIRENITYGAS-DK--ID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 472 lr~~i~~v~Q~p~lf-~gTireNi~~g~~-~~--~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
+|++++|+||+|.+| +.|++||+.++.. .. .+ ++++.++++.+++.+.+.. .+++. ..+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~----~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAP----AGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCC----cccCCHHHH
Confidence 999999999999765 5799999987521 00 01 3456778888877654321 23333 457999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+|+||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999999
Q ss_pred hhcCCCcHHHHHH
Q 006496 623 LAKGPAGAYYSLV 635 (643)
Q Consensus 623 l~~~~~g~y~~l~ 635 (643)
.+. +...+.+.+
T Consensus 233 ~~~-~~~~~~~~~ 244 (250)
T PRK14247 233 FTN-PRHELTEKY 244 (250)
T ss_pred HcC-CccHHHHHH
Confidence 863 334454433
No 117
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.2e-46 Score=391.00 Aligned_cols=218 Identities=34% Similarity=0.521 Sum_probs=192.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999964 3589999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 99999998731 1122 346778888889988877776 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|++++++.+ +
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~-p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE-P 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999988765 68999999999986 46999999999999999999999875 4
Q ss_pred CcHH
Q 006496 628 AGAY 631 (643)
Q Consensus 628 ~g~y 631 (643)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4344
No 118
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-46 Score=378.15 Aligned_cols=216 Identities=30% Similarity=0.558 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEP--ALFAGTIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+|+||+| .+++.|++|||.++.. ...+++ ++.++++..++.++....| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 112333 3556677777766654433 58999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998754 489999999999998999999999999999999998876
No 119
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-45 Score=373.26 Aligned_cols=214 Identities=31% Similarity=0.481 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC---------
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH--------- 468 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~--------- 468 (643)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999964 35899999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEecCCCCCc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCC
Q 006496 469 ----LRSLRRHIALVSQEPALFA-GTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537 (643)
Q Consensus 469 ----~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~ 537 (643)
...+|+.++|++|++.+|. .|++||+.++.. .... ++++.++++..++.++... ....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhh
Confidence 2467889999999999986 799999987421 0112 2345666666666555443 3457
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEE
Q 006496 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVV 614 (643)
Q Consensus 538 LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Iv 614 (643)
||||||||++||||++++|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 689999999999985 59999999999999
Q ss_pred EEcChhHHhhc
Q 006496 615 EEGSHQSLLAK 625 (643)
Q Consensus 615 e~G~~~eLl~~ 625 (643)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999864
No 120
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-45 Score=367.12 Aligned_cols=217 Identities=30% Similarity=0.418 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~i 476 (643)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999964 358999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
+|+||++.+|++ |++||+.++.. ....++.++.+ .+.++.++ +++.........||||||||++||||++++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 99999988631 12111111111 11222221 122233344567999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|++|||||||++||+++...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999998875 46899999999998755 99999999999999999988764
No 121
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-45 Score=392.07 Aligned_cols=223 Identities=28% Similarity=0.473 Sum_probs=196.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++..++++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999964 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 477 ALVSQEPAL-FAGTIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 477 ~~v~Q~p~l-f~gTireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+||+|++.+ |+.|++||+.++..+ ..++++++++++.+++.++.++. ..+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 999999997 678999999887321 12345688899999987765432 347999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+++|+++.+ +.||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 478999999999998 5699999999999999999999985
Q ss_pred cCCCcHHHHHHH
Q 006496 625 KGPAGAYYSLVS 636 (643)
Q Consensus 625 ~~~~g~y~~l~~ 636 (643)
.....++|.
T Consensus 229 ---~~~l~~~~~ 237 (402)
T PRK09536 229 ---ADTLRAAFD 237 (402)
T ss_pred ---cHHHHHHhC
Confidence 234555553
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-46 Score=365.64 Aligned_cols=204 Identities=29% Similarity=0.512 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 35899999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|.+ |++||+.+... ...+ ++++.++++..++.++.+ +.+ .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence 99999999986 99999986310 0111 345677888888766543 332 4699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877899999999999986 59999999999999875
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=379.44 Aligned_cols=215 Identities=29% Similarity=0.514 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC--CCCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR--SHHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~--~~~~~~lr~ 474 (643)
-|+++|++|+|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 3899999999963 235899999999999999999999999999999999999999999999999984 344667899
Q ss_pred ccEEEecCC--CCCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 475 HIALVSQEP--ALFAGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 475 ~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
+++|+||+| .+|+.|++||+.++.. ...+ ++++.++++.+++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5789999999987521 1122 23466677777776543 2345689999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||||+.+|+||||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988764 789999999999986 699999999999999999999876
No 124
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-46 Score=374.86 Aligned_cols=226 Identities=34% Similarity=0.517 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 3899999999964 358999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++++.+ +.. ......+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~----~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDN----LDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHH----hccChhhCCHHHH
Confidence 677889999999999999999999987521 011 123556667776664321 112 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999765 999999999999999999999
Q ss_pred hhcCCCcHHHH
Q 006496 623 LAKGPAGAYYS 633 (643)
Q Consensus 623 l~~~~~g~y~~ 633 (643)
... +...|.+
T Consensus 234 ~~~-~~~~~~~ 243 (251)
T PRK14251 234 FIA-PKKQITS 243 (251)
T ss_pred HhC-CCCHHHH
Confidence 763 3333443
No 125
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=373.34 Aligned_cols=219 Identities=31% Similarity=0.477 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~--~---~~G~I~idG~di~~~--~~ 469 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 3899999999964 358999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC--CC----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS--DK----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|+||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 578889999999999999999999986420 11 11244556677777654433 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999875 5999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
.++
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 864
No 126
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=374.56 Aligned_cols=225 Identities=30% Similarity=0.461 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~--~---~~G~I~idG~di~~--~~~ 469 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999964 358999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CC-CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DK-IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~-~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||++.+|++|++||+.++.. .. .++ +++.++++..++.+++. +.......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999987631 11 122 23555666776655442 223445568999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+|+||||||++||+++...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999975 5999999999999999999999
Q ss_pred hhcCCCcHHH
Q 006496 623 LAKGPAGAYY 632 (643)
Q Consensus 623 l~~~~~g~y~ 632 (643)
..+ +...|.
T Consensus 242 ~~~-~~~~~~ 250 (259)
T PRK14274 242 FSN-PDDQRT 250 (259)
T ss_pred hhC-CCCHHH
Confidence 864 344443
No 127
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=366.62 Aligned_cols=210 Identities=29% Similarity=0.462 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999964 3589999999999999999999999999999999999999999999999998763 457788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||++.+|+. |++||+.++.. ... .++++.++++..++.++.+..| ..||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999985 99999976410 011 2346777888888876654433 3699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
++.+|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988754 6899999999999865 999999999999999998875
No 128
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-45 Score=370.42 Aligned_cols=214 Identities=29% Similarity=0.448 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC--CHHHHhcc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH--HLRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~--~~~~lr~~ 475 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3589999999999999999999999999999999999999999999999999864 34577889
Q ss_pred cEEEecCCCCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 476 IALVSQEPALFA-GTIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 476 i~~v~Q~p~lf~-gTireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++|+||++.+|. .|++||+.++.. ...+. +++.++++..++.+.. ......||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 999999999886 599999987521 11222 2344555555554433 33446799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
|||++++|+++||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998865 36899999999999864 999999999999999999999863
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=380.33 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC----CCHHH
Q 006496 398 IELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS----HHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~----~~~~~ 471 (643)
|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999997421 1359999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 472 LRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 472 lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
.|++++||+|+| .+|+.|++|||.++.. ...+.+ ++.++++.+++++.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 6888999999998731 112333 445566666664221 12334579999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988754 689999999999875 599999999999999999999
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 875
No 130
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=375.48 Aligned_cols=220 Identities=32% Similarity=0.513 Sum_probs=190.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~ 468 (643)
+.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999964 3589999999999999999999999999999999999984 89999999999875 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|++++|+||++.+|++|++||+.++.. ... .++++.++++.+++.+++.. ..+..+..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 5678999999999999999999999987521 111 12446777777777654432 3455667899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
|||++||||++++|+|+||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred Hhhc
Q 006496 622 LLAK 625 (643)
Q Consensus 622 Ll~~ 625 (643)
+.++
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 9863
No 131
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.4e-45 Score=365.44 Aligned_cols=208 Identities=29% Similarity=0.510 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
|+++||+++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997531 1268999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|+||+|.+|++ |++||+.+... ...+ ++++.++++..++.+... ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999986 99999976421 1122 345566777776655543 344579999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 36899999999998764 9999999999998865
No 132
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2e-45 Score=383.61 Aligned_cols=225 Identities=26% Similarity=0.384 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC
Q 006496 397 HIELEDVHFAYPARP----------NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS 466 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~ 466 (643)
-|+++|++++|+... ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---HhcccEEEecCC--CCCc-ccHHHHHhcCC---CCCCCH----HHHHHHHHHhccHH-HHHhcccccccccC
Q 006496 467 HHLRS---LRRHIALVSQEP--ALFA-GTIRENITYGA---SDKIDE----SEIIEAGKAANAHD-FIAGLYEGYDTWCG 532 (643)
Q Consensus 467 ~~~~~---lr~~i~~v~Q~p--~lf~-gTireNi~~g~---~~~~~~----e~i~~al~~~~l~~-~I~~lp~Gldt~vg 532 (643)
++..+ +|++++||+|+| .+|+ .||.|||.++. ....+. +++.++++.+++.+ .. .
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----------~ 156 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----------N 156 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----------c
Confidence 87654 678899999999 4774 79999996531 012343 33455666666632 22 2
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEe
Q 006496 533 DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLE 609 (643)
Q Consensus 533 e~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~ 609 (643)
....+||||||||++|||||+.+|++||+|||||+||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 23457999999999999999999999999999999999999999999988754 6899999999999975 99999999
Q ss_pred CCEEEEEcChhHHhhcCCCcHHHH
Q 006496 610 QGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 610 ~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
+|+|+|.|++++++++ +...|.+
T Consensus 237 ~G~ive~g~~~~i~~~-~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHN-PLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcC-CCCHHHH
Confidence 9999999999999874 4445655
No 133
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=371.00 Aligned_cols=228 Identities=29% Similarity=0.465 Sum_probs=191.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~-----~G~I~idG~di~~--~~~ 469 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999964 35899999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|+||+|.+|+.|++||+.++.. ... . ++++.++++..++++++. ........+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987631 011 1 234555666666655443 234556778999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999876 799999999999999999999
Q ss_pred hhcCCCcHHHHH
Q 006496 623 LAKGPAGAYYSL 634 (643)
Q Consensus 623 l~~~~~g~y~~l 634 (643)
........++.+
T Consensus 234 ~~~~~~~~~~~~ 245 (251)
T PRK14249 234 FSRPRDKRTEDY 245 (251)
T ss_pred HhCCCChHHHHH
Confidence 764233334433
No 134
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=376.73 Aligned_cols=216 Identities=27% Similarity=0.491 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC---cEEEECCeeCCCCCHHHHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK---GVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~---G~I~idG~di~~~~~~~lr 473 (643)
.|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999743 2358999999999999999999999999999999999999988 8999999999888888889
Q ss_pred cccEEEecCC--CCCcccHHHHHhcCC-CCCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEP--ALFAGTIRENITYGA-SDKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p--~lf~gTireNi~~g~-~~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
++++|+||+| .+++.|++|||.++. ....++ +++.++++.+++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 467889999998762 112333 34677888888877766555 57999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988754 689999999999998999999999999999999998875
No 135
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=371.42 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEECCeeCCCC--C
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGRDIRSH--H 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~--~---~~G~I~idG~di~~~--~ 468 (643)
+.|+++|++++|++ .++|+|+||+|++||.++|+|++|||||||+++|.|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 358999999999999999999999999999999999986 4 689999999998754 4
Q ss_pred HHHHhcccEEEecCCCCCc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 469 LRSLRRHIALVSQEPALFA-GTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
...+|++++|+||++.+|. .|++||+.++.. ...+ ++++.++++.+++.+++..+ .+....+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 5578899999999999998 599999986421 1111 24466777777776554322 23345689999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChh
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 620 (643)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhhc
Q 006496 621 SLLAK 625 (643)
Q Consensus 621 eLl~~ 625 (643)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 99864
No 136
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=374.58 Aligned_cols=218 Identities=33% Similarity=0.483 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 20 ALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred EEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 5999999999963 468999999999999999999999999999999999997 589999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|+||++.+|+.|++|||.++.. ...+ ++++.++++.+++.+++. +..+.....||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHHH
Confidence 678999999999999999999999987521 1111 345667788887765553 234556678999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999999
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
..
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 86
No 137
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-45 Score=388.00 Aligned_cols=219 Identities=35% Similarity=0.516 Sum_probs=191.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC--cEEEECCeeCCCCCHHHHh
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK--GVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~--G~I~idG~di~~~~~~~lr 473 (643)
+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 56999999999964 358999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
++++||+|++.+|+. |++|||.|+.. ...+ ++++.++++.++++++.++.| .+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 99999998631 1123 245677888888877766655 479999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV---ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~---~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987655 579999999999874 59999999999999999999999
Q ss_pred hcCCCcHH
Q 006496 624 AKGPAGAY 631 (643)
Q Consensus 624 ~~~~~g~y 631 (643)
++ +...|
T Consensus 228 ~~-p~~~~ 234 (362)
T TIGR03258 228 DA-PADGF 234 (362)
T ss_pred hC-cCcHH
Confidence 74 44444
No 138
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=375.10 Aligned_cols=219 Identities=32% Similarity=0.457 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999964 358999999999999999999999999999999999875 789999999999875 344
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC--CC----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS--DK----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|++|++.+|++|++||+.++.. .. ..++++.++++.+++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 578889999999999999999999986521 10 11244566677766643322 223445568999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999875 5999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 864
No 139
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=373.14 Aligned_cols=219 Identities=31% Similarity=0.511 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCCC--H
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSHH--L 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~~--~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3589999999999999999999999999999999999985 7999999999986533 4
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
..+|+.++|+||++.+|+.|++||+.++.. ...+. +++.++++.+++.+++. ..++ .....|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHHH
Confidence 567889999999999999999999987521 11222 34566777776643321 1233 345679999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|++||||++.+|+||||||||++||+++...+.+.|+++.+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999855 9999999999999999999998
Q ss_pred hc
Q 006496 624 AK 625 (643)
Q Consensus 624 ~~ 625 (643)
++
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 64
No 140
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=372.86 Aligned_cols=219 Identities=35% Similarity=0.549 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---CCC--CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF---YDP--LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl---~~~--~~G~I~idG~di~~~--~~ 469 (643)
.|+++|++++|++ ..+|+|+||+|++||.++|+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3589999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||++.+|+.|++||+.++.. ... .+++++++++.+++.+++. +.......+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678889999999999999999999987521 111 2345666777777655443 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 864
No 141
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=371.20 Aligned_cols=220 Identities=35% Similarity=0.536 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~ 468 (643)
|.|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999964 3589999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999987621 111 2345666677777654443 22344556899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhH
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 621 (643)
|||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998755 99999999999999999999
Q ss_pred Hhhc
Q 006496 622 LLAK 625 (643)
Q Consensus 622 Ll~~ 625 (643)
+..+
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 9863
No 142
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-45 Score=362.73 Aligned_cols=200 Identities=29% Similarity=0.492 Sum_probs=175.2
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 358999999999999999999999999999999999999999999999998864 467788999
Q ss_pred EecCC--CCCcccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 479 VSQEP--ALFAGTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 479 v~Q~p--~lf~gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
+||+| .+|+.|++||+.++.. ....++++.++++.+++.++.+..| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 4778999999988631 1123457888999998887765554 36999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEE
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVV 614 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv 614 (643)
|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998873 56899999999999864 9999999999985
No 143
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=377.26 Aligned_cols=217 Identities=26% Similarity=0.461 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC-HHHH
Q 006496 397 HIELEDVHFAYPARP---NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH-LRSL 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~-~~~l 472 (643)
-|+++|++++|++.. ..++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEecCCC--CCcccHHHHHhcCCCC-CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 473 RRHIALVSQEPA--LFAGTIRENITYGASD-KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 473 r~~i~~v~Q~p~--lf~gTireNi~~g~~~-~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
|++++|+||+|. +|..|+.+|+.++... ..+ ++++.++++.+++.++....| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 7777999999886311 122 356778888888887766654 4799999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHh
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999987
Q ss_pred h
Q 006496 624 A 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 5
No 144
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=374.15 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=188.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCCCC--HH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRSHH--LR 470 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~~~--~~ 470 (643)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 368999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCC-CC------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGAS-DK------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
.+|++++|+||++.+|++|++||+.++.. .. ..++++.++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 11344566777777655432 223445668999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999864 999999999999999999999
Q ss_pred hhcCCCcHH
Q 006496 623 LAKGPAGAY 631 (643)
Q Consensus 623 l~~~~~g~y 631 (643)
.++ +...|
T Consensus 236 ~~~-~~~~~ 243 (251)
T PRK14244 236 FKN-PQSSK 243 (251)
T ss_pred hcC-CCChH
Confidence 874 44444
No 145
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=375.08 Aligned_cols=222 Identities=29% Similarity=0.441 Sum_probs=193.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+|+||++.+|.+ |++||+.++... ...++++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877765 999999875210 112456788888888876655443 36999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+||||++.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 689999999999985 59999999999999999999987
Q ss_pred hcCCCcHHHHHH
Q 006496 624 AKGPAGAYYSLV 635 (643)
Q Consensus 624 ~~~~~g~y~~l~ 635 (643)
. ...+..++
T Consensus 237 ~---~~~~~~~~ 245 (265)
T PRK10575 237 R---GETLEQIY 245 (265)
T ss_pred C---HHHHHHHh
Confidence 5 23344554
No 146
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=390.19 Aligned_cols=213 Identities=29% Similarity=0.429 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999964 358999999999999999999999999999999999999999999999999987765 35789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+. |++|||.++.. ...+ ++++.++++..++.++.+..| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999998631 1122 245777888888776655444 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 689999999999875 5999999999999999999999874
No 147
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.6e-45 Score=371.24 Aligned_cols=225 Identities=30% Similarity=0.464 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC--------H
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH--------L 469 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~--------~ 469 (643)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999964 35899999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEecCCCCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 470 RSLRRHIALVSQEPALFA-GTIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
..+|++++|+||++.+|+ .|++||+.++.. ...+. +++.++++..++ +........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-----------AGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------cchhhCChhhCChHH
Confidence 567889999999999996 699999986410 11222 233444444444 333344556899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChh
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~ 620 (643)
|||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988754 7899999999999865 9999999999999999999
Q ss_pred HHhhcCCCcHHHHHHH
Q 006496 621 SLLAKGPAGAYYSLVS 636 (643)
Q Consensus 621 eLl~~~~~g~y~~l~~ 636 (643)
++.+.......+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 230 ALFADPQQPRTRQFLE 245 (250)
T ss_pred HHhcCCCCHHHHHHHH
Confidence 9976422233344443
No 148
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=375.44 Aligned_cols=214 Identities=29% Similarity=0.494 Sum_probs=189.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999642 25899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 478 LVSQEP--ALFAGTIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 478 ~v~Q~p--~lf~gTireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
|++|+| .+|+.|++||+.++.. ...++ +++.++++.+++.+++...| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788899999987531 12333 34677788888876655544 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999988754 68999999999998 5699999999999999999999976
No 149
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.6e-45 Score=374.48 Aligned_cols=225 Identities=26% Similarity=0.407 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr 473 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999877653 357
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
++++|+||++.+|++ |++||+.++.. ...+. +++.++++..++.+.... ...+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 889999999999986 99999986411 11222 244556666665443322 2357999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988754 6899999999998865 9999999999999999999998
Q ss_pred hcCCCcHHHHHHH
Q 006496 624 AKGPAGAYYSLVS 636 (643)
Q Consensus 624 ~~~~~g~y~~l~~ 636 (643)
+. +...+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 63 3445555554
No 150
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=371.74 Aligned_cols=217 Identities=31% Similarity=0.474 Sum_probs=185.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC--------
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH-------- 467 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~-------- 467 (643)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 45999999999964 3589999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhcccEEEecCCCCCcc-cHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCC
Q 006496 468 -----HLRSLRRHIALVSQEPALFAG-TIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRG 535 (643)
Q Consensus 468 -----~~~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G 535 (643)
....+|++++|+||++.+|+. |++||+.++.. ...+ ++++.++++..++.++.. ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 135678899999999999985 99999986420 0112 234555666665544321 3345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 67999999999999999999999999999999999999999999988754 7999999999999986 999999999999
Q ss_pred EEEcChhHHhhc
Q 006496 614 VEEGSHQSLLAK 625 (643)
Q Consensus 614 ve~G~~~eLl~~ 625 (643)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999999863
No 151
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-45 Score=362.33 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998764 56788899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
|+||++.+|. .|++||+.++.. ...+++++.++++..++++..... ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 699999987521 123567788899999887765543 346999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47899999999998864 9999999999999875
No 152
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.8e-46 Score=366.91 Aligned_cols=205 Identities=36% Similarity=0.481 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH----H
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS----L 472 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~----l 472 (643)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 146899999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 473 RRHIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 473 r~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
|++++|+||+|.+|.+ |++||+.++.. ...+ ++++.++++..++++... ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 6789999999999987 99999987521 1111 235566666666654433 33457999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEE
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRV 613 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~I 613 (643)
+||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998765 7899999999999889999999999974
No 153
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-45 Score=365.29 Aligned_cols=206 Identities=28% Similarity=0.439 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---LR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---lr 473 (643)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246899999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cccEEEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 -RHIALVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 -~~i~~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+.++|++|++.+|+ .|++||+.++.. ...+ ++++.++++..++++... .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 67999999999996 599999987411 0122 234555666665554433 33357999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEE
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVV 614 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Iv 614 (643)
+||||++++|+||||||||++||+++...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999988753 68999999999999999999999999986
No 154
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=371.22 Aligned_cols=228 Identities=31% Similarity=0.471 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~--~~ 469 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC--CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS--DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||+|.+|+.|++||+.++.. ... .++++.++++..++++.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999987521 011 23346667777777654432 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+|+||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999764 5999999999999999999999
Q ss_pred hhcCCCcHHHHHH
Q 006496 623 LAKGPAGAYYSLV 635 (643)
Q Consensus 623 l~~~~~g~y~~l~ 635 (643)
.+. +...|.+.+
T Consensus 233 ~~~-~~~~~~~~~ 244 (250)
T PRK14262 233 VER-PKNKLTEEY 244 (250)
T ss_pred HhC-CCChHHHHH
Confidence 863 334455544
No 155
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=372.34 Aligned_cols=219 Identities=33% Similarity=0.484 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 13 ~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 5999999999964 358999999999999999999999999999999999987 689999999999863 567
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC---CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI---DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~---~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
.++|++++|+||++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. +.......+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHHH
Confidence 788999999999999999999999987631 111 1345666777776654332 23344556899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeC-----------CEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQ-----------GRV 613 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~-----------G~I 613 (643)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++ |+|
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999998877789999999999875 5999999996 679
Q ss_pred EEEcChhHHhhc
Q 006496 614 VEEGSHQSLLAK 625 (643)
Q Consensus 614 ve~G~~~eLl~~ 625 (643)
++.|+++++..+
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999999999864
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=373.96 Aligned_cols=216 Identities=30% Similarity=0.476 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC-CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEPA--LFAGTIRENITYGASD-KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p~--lf~gTireNi~~g~~~-~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+|++|+|. ++..|+++|+.++... ..+ ++++.++++..++.++.+ ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999995 4456899999876311 122 234566677776655433 23457999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999988754 689999999999998899999999999999999999876
No 157
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=388.92 Aligned_cols=211 Identities=35% Similarity=0.533 Sum_probs=182.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH----hcccEEEecCCCCCcc-
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL----RRHIALVSQEPALFAG- 488 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l----r~~i~~v~Q~p~lf~g- 488 (643)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++...+ |++++||+|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 4689999999999975
Q ss_pred cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q 006496 489 TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDE 563 (643)
Q Consensus 489 TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE 563 (643)
|++||+.++.. ...+ ++++.++++.+++.++....| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997621 1112 346777888888877766655 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhcCCCcHH-HHHHH
Q 006496 564 ATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAKGPAGAY-YSLVS 636 (643)
Q Consensus 564 ~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y-~~l~~ 636 (643)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|++++++.+ +...| +.++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~-~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN-PANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC-cccHHHHHHHh
Confidence 999999999999999998874 3789999999999875 5999999999999999999999874 33334 34443
No 158
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=379.22 Aligned_cols=216 Identities=24% Similarity=0.446 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC---------
Q 006496 398 IELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS--------- 466 (643)
Q Consensus 398 I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~--------- 466 (643)
|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997532 1358999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCH----HHHHHHHHHhccH-HHHHhc
Q 006496 467 ---------------HHLRSLRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDE----SEIIEAGKAANAH-DFIAGL 523 (643)
Q Consensus 467 ---------------~~~~~lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~----e~i~~al~~~~l~-~~I~~l 523 (643)
.+...+|++++||||+| .+|..|++|||.|+.. ...++ +++.++++.+++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL--- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---
Confidence 13467889999999986 6888999999998741 12333 3456666666664 332
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchh-hh
Q 006496 524 YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTI-QN 601 (643)
Q Consensus 524 p~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i-~~ 601 (643)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..
T Consensus 160 --------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 160 --------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred --------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 233457999999999999999999999999999999999999999999987643 78999999999976 56
Q ss_pred cCEEEEEeCCEEEEEcChhHHhh
Q 006496 602 CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 602 ~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++|++|+|++.|+++++.+
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999876
No 159
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=371.57 Aligned_cols=223 Identities=29% Similarity=0.472 Sum_probs=192.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++|.++.+++..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
|+||++.+|.+ |++||+.++... ...++++.++++.+++.++.+. ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999999877 999999876210 1123456777777777655433 23579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 99999999999999999999999999999999988653 789999999999875 599999999999999999999875
Q ss_pred CCCcHHHHHHHh
Q 006496 626 GPAGAYYSLVSL 637 (643)
Q Consensus 626 ~~~g~y~~l~~~ 637 (643)
...+.+.+..
T Consensus 228 --~~~~~~~~~~ 237 (255)
T PRK11231 228 --PGLLRTVFDV 237 (255)
T ss_pred --HHHHHHHhCC
Confidence 2345565543
No 160
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=369.96 Aligned_cols=230 Identities=29% Similarity=0.449 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~--~~ 469 (643)
-|+++|++|+|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 3589999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCC-CC-C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASD-KI-D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~-~~-~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
...|+.++|++|++.+|++|++||+.++... .. + ++++.++++.+++.+.+ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6788899999999999999999999986310 11 1 23455666666654433 2335566778999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++.+|+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999986 5999999999999999999999
Q ss_pred hhcCCCcHHHHHHHh
Q 006496 623 LAKGPAGAYYSLVSL 637 (643)
Q Consensus 623 l~~~~~g~y~~l~~~ 637 (643)
..+ +...+.+.|..
T Consensus 236 ~~~-~~~~~~~~~~~ 249 (253)
T PRK14261 236 FEN-PHEELTENYIT 249 (253)
T ss_pred HhC-CCcHHHHHHhc
Confidence 863 34445555443
No 161
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=372.71 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
-++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999964 358999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCCCH-----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKIDE-----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~~~-----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||+|.+|..|++||+.++.. ...++ +++.++++..++.+.+ .......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 11222 2234445444443222 2334556678999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 4999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
..+
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 864
No 162
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=369.29 Aligned_cols=219 Identities=32% Similarity=0.484 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~--~~ 469 (643)
-|+++|++++|++ .++|+|+||+|++||.++|+|++|||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 3589999999999999999999999999999999999975 799999999998753 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|+||++.+|+.|++||+.++.. ... + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 577889999999999999999999987631 111 1 2345677777777544432 23345567999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+|||||||||+||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
..+
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 864
No 163
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=372.05 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCCC-HH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSHH-LR 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~~-~~ 470 (643)
-++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 4899999999964 3689999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCC--CCCCHHHH----HHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGAS--DKIDESEI----IEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~~~e~i----~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
.+|++++|+||+|.+|+.|++||+.++.. ...+++++ .++++.+++.++ +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 78899999999999999999999987521 11344443 334444444332 223445667789999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999998764 9999999999999999999998
Q ss_pred hc
Q 006496 624 AK 625 (643)
Q Consensus 624 ~~ 625 (643)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 74
No 164
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.1e-45 Score=362.83 Aligned_cols=204 Identities=31% Similarity=0.523 Sum_probs=175.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3589999999999999999999999999999999999999999999999999766543 56899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 599999987521 1122 234566677777766554433 5799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999988753 6899999999998865 9999999999999876
No 165
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-45 Score=367.70 Aligned_cols=213 Identities=25% Similarity=0.402 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~i 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999964 358999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-------------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDK-------------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~-------------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
+|+||++.+|++ |++||+.++.... ..++++.++++..++ +.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHH
Confidence 999999999987 9999998752110 012234444444443 333444556899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhH
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 621 (643)
|||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
No 166
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-45 Score=367.55 Aligned_cols=213 Identities=27% Similarity=0.447 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC------CCCHHH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR------SHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~------~~~~~~ 471 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 35899999999999999999999999999999999999999999999999873 223467
Q ss_pred HhcccEEEecCCCCCcc-cHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 472 LRRHIALVSQEPALFAG-TIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 472 lr~~i~~v~Q~p~lf~g-TireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
+|++++|+||+|.+|++ |++|||.++.. ...+ .+++.++++..++.+++.. ...+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHH
Confidence 88899999999999975 99999975310 0112 2234455555555444433 34579999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++||||++++|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999999988754 7899999999999865 999999999999999999998
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 65
No 167
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-45 Score=361.25 Aligned_cols=210 Identities=30% Similarity=0.447 Sum_probs=187.7
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH----HHHhc
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL----RSLRR 474 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~----~~lr~ 474 (643)
.+.|+.|+|+.+ .++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 468999999999999999999999999999999999999999999999998876543 34577
Q ss_pred ccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 475 HIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 475 ~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
.++|++|+|.+|+.|++||+.++. ..++++.+++++.+++.++++.+|.|++|.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999863 345677889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHH--HHHHHcC-CceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQE--ALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~--~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
+|+++||||||++||+.+...+.+ .++...+ ++|+|++||+++.+..||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887776 3443322 589999999999999999999999984
No 168
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3e-45 Score=350.94 Aligned_cols=178 Identities=33% Similarity=0.638 Sum_probs=166.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. ..++++|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999753 23589999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|+|.+|+.|++||+ ..+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 45799999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEc
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G 617 (643)
+|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999999999999999999865
No 169
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9e-45 Score=370.13 Aligned_cols=232 Identities=25% Similarity=0.389 Sum_probs=192.9
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH
Q 006496 397 HIELEDVHFAYPAR------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~ 470 (643)
-|+++||+++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124689999999999999999999999999999999999999999999999999866666
Q ss_pred HHhcccEEEecCCC--CCcc-cHHHHHhcCC--CCCC----CHHHHHHHHHHhccH-HHHHhcccccccccCCCCCCCCh
Q 006496 471 SLRRHIALVSQEPA--LFAG-TIRENITYGA--SDKI----DESEIIEAGKAANAH-DFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~--lf~g-TireNi~~g~--~~~~----~~e~i~~al~~~~l~-~~I~~lp~Gldt~vge~G~~LSg 540 (643)
..+++++|+||+|. +++. |+.+|+.+.. +... .++++.++++.+++. +... .. ..+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence 67778999999985 4543 8899986531 0011 234567788888873 3322 22 247999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
|||||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 6899999999999986 9999999999999999
Q ss_pred ChhHHhhcCCCcHHHHHHHhhc
Q 006496 618 SHQSLLAKGPAGAYYSLVSLQT 639 (643)
Q Consensus 618 ~~~eLl~~~~~g~y~~l~~~q~ 639 (643)
+++++.+......+++++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhcc
Confidence 9999987534566777886543
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-45 Score=379.28 Aligned_cols=227 Identities=30% Similarity=0.455 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH
Q 006496 397 HIELEDVHFAYPARP-------NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~-------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~ 469 (643)
-|+++|++++|+... ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999997321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcccEEEecCCC--CCc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCC
Q 006496 470 R---SLRRHIALVSQEPA--LFA-GTIRENITYGA--SDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537 (643)
Q Consensus 470 ~---~lr~~i~~v~Q~p~--lf~-gTireNi~~g~--~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~ 537 (643)
. .+|++|+||+|+|. |++ -|+.+|+.... ....+ .+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56889999999994 555 38988885310 00112 345677777777742 233443 346
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEE
Q 006496 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVV 614 (643)
Q Consensus 538 LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv 614 (643)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 6899999999999975 9999999999999
Q ss_pred EEcChhHHhhcCCCcHHHHH
Q 006496 615 EEGSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 615 e~G~~~eLl~~~~~g~y~~l 634 (643)
|.|+.++++++ +...|.+.
T Consensus 235 e~g~~~~~~~~-p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNN-PRHPYTQA 253 (327)
T ss_pred EECCHHHHhcC-CCCHHHHH
Confidence 99999999975 44456653
No 171
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=371.95 Aligned_cols=214 Identities=29% Similarity=0.499 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC-HHHHhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH-LRSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~-~~~lr~~i 476 (643)
|+++|++++|++. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999632 35899999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC-CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 477 ALVSQEPA--LFAGTIRENITYGASD-KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 477 ~~v~Q~p~--lf~gTireNi~~g~~~-~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+|+||+|. +++.|++|||.++... ..+ ++++.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 5678999999886311 122 3445666777776655433 3357999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||++.+|+|+||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999987653 789999999999999999999999999999999999875
No 172
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=371.82 Aligned_cols=229 Identities=31% Similarity=0.484 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4899999999964 358999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC----CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS----DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~----~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
..+|++++|+||++.+|+.|++||+.++.. +...+++++++++..++.+.+.. .......+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 678899999999999999999999986421 11124567778888777544432 2344556899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEE-EEeCCEEEEEcChhHHh
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIA-VLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~-vl~~G~Ive~G~~~eLl 623 (643)
++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999865 99975 57999999999999998
Q ss_pred hcCCCcHHHHHH
Q 006496 624 AKGPAGAYYSLV 635 (643)
Q Consensus 624 ~~~~~g~y~~l~ 635 (643)
++.....+.+++
T Consensus 269 ~~~~~~~~~~~~ 280 (285)
T PRK14254 269 ENPESQRVEDYI 280 (285)
T ss_pred hCcCCHHHHHHh
Confidence 642223344443
No 173
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=369.42 Aligned_cols=219 Identities=31% Similarity=0.474 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 358999999999999999999999999999999999986 479999999999853 456
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCC-CC---CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASD-KI---DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~-~~---~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
..+|++++|++|++.+|+.|++||+.++... .. .++++.++++.+++.+++..+ ......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHH
Confidence 6789999999999999999999999876311 11 234566678888887665422 344566899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEe---------CCEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLE---------QGRVVE 615 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~---------~G~Ive 615 (643)
++||||++++|+||||||||++||+++...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877789999999999875 589999999 899999
Q ss_pred EcChhHHhhc
Q 006496 616 EGSHQSLLAK 625 (643)
Q Consensus 616 ~G~~~eLl~~ 625 (643)
.|+++++.++
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999864
No 174
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.8e-45 Score=366.82 Aligned_cols=217 Identities=25% Similarity=0.407 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~i 476 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999964 358999999999999999999999999999999999999999999999999988876654 5779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
+|+||++.+|++ |++||+.++.. ...+.++..+ .+++.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999987521 1122221111 122333333 44444455556899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999987654 689999999998765 599999999999999999999875
No 175
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-45 Score=362.93 Aligned_cols=206 Identities=32% Similarity=0.447 Sum_probs=177.2
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 1469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGAS-DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~-~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||||+|.+|+ .|++||+.++.. ... .++++.++++..++.++....| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999998 699999987521 111 2345677778877766655544 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEe--CCEEEEEcCh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLE--QGRVVEEGSH 619 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~--~G~Ive~G~~ 619 (643)
|++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999988743 689999999999875 599999999 7999998874
No 176
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.7e-45 Score=366.39 Aligned_cols=213 Identities=29% Similarity=0.433 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~i 476 (643)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 35899999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-CCCHH-HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD-KIDES-EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~-~~~~e-~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|+||++.+|++ |++||+.++... ..+++ ...++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999876211 11111 2233333322 2233334455679999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999988764 6899999999999885 9999999999999999999984
No 177
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-45 Score=361.55 Aligned_cols=202 Identities=34% Similarity=0.579 Sum_probs=173.8
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2468999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EecCC--CCCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 479 VSQEP--ALFAGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 479 v~Q~p--~lf~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
+||+| .+++.|++||+.++.. ...+ ++++.++++..++.+++... ...||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 3678899999987521 1122 23455666666665554433 35799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCE
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGR 612 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~ 612 (643)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999988754 6899999999999987 99999999985
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=8.5e-45 Score=370.08 Aligned_cols=227 Identities=31% Similarity=0.440 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH
Q 006496 398 IELEDVHFAYPAR------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~ 471 (643)
|+++||+|+|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1346899999999999999999999999999999999999999999999999998877643
Q ss_pred ---HhcccEEEecCCC--CC-cccHHHHHhcCCC--CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 472 ---LRRHIALVSQEPA--LF-AGTIRENITYGAS--DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 472 ---lr~~i~~v~Q~p~--lf-~gTireNi~~g~~--~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
+|+.++|+||+|. ++ ..|++|||.++.. ... .++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 3699999964310 011 2334555666555531 12234456799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEE 616 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~ 616 (643)
||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998754 689999999999987 5999999999999999
Q ss_pred cChhHHhhcCCCcHHHHHH
Q 006496 617 GSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l~ 635 (643)
|++++++.. ++..+..+.
T Consensus 233 g~~~~~~~~-~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSF-KHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCC-CCHHHHHHH
Confidence 999999872 333344343
No 179
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=369.84 Aligned_cols=220 Identities=35% Similarity=0.518 Sum_probs=189.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~ 468 (643)
+.|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||.++.+ ..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 35999999999963 3589999999999999999999999999999999999985 48999999999864 44
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|++++|+||++.+|+.|++||+.++.. ...+ ++++.++++.+++++++..+ .......|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 5678899999999999999999999987521 0111 23456778888886655432 234556899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEe-----CCEEEEE
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLE-----QGRVVEE 616 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~-----~G~Ive~ 616 (643)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988778999999999999865 99999998 5999999
Q ss_pred cChhHHhhc
Q 006496 617 GSHQSLLAK 625 (643)
Q Consensus 617 G~~~eLl~~ 625 (643)
|+++++.++
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999764
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-45 Score=366.83 Aligned_cols=219 Identities=32% Similarity=0.513 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCC-CCCHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIR-SHHLR 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~-~~~~~ 470 (643)
.++++|++++|++ ..+|+|+||+|++||.++|+|++|||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999964 3589999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcccEEEecCCCCCcccHHHHHhcCCC-CCCC-----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 471 SLRRHIALVSQEPALFAGTIRENITYGAS-DKID-----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~~-----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
.+|+.++|+||+|.+|+.|++||+.++.. .... ++++.++++.+++++.+. +........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999987521 1111 234556677777655442 2234445679999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHh
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 623 (643)
|++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|+|++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hc
Q 006496 624 AK 625 (643)
Q Consensus 624 ~~ 625 (643)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
No 181
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=366.66 Aligned_cols=225 Identities=32% Similarity=0.508 Sum_probs=192.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~--~~~ 469 (643)
.++++||+++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 358999999999999999999999999999999999874 389999999999875 346
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CC-CC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DK-ID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~-~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|+||+|.+|+.|++||+.++.. .. .+ ++++.++++.+++.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999987521 11 12 24567778888887766532 2344568999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||++..+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999999
Q ss_pred hhcCCCcHHH
Q 006496 623 LAKGPAGAYY 632 (643)
Q Consensus 623 l~~~~~g~y~ 632 (643)
... +.+.|.
T Consensus 233 ~~~-~~~~~~ 241 (250)
T PRK14266 233 FIN-PKDKRT 241 (250)
T ss_pred HhC-CCChHH
Confidence 764 444443
No 182
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7e-45 Score=383.25 Aligned_cols=211 Identities=28% Similarity=0.435 Sum_probs=180.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCe----eCCCCCHHHHh----cccEEEecCCC
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR----DIRSHHLRSLR----RHIALVSQEPA 484 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~----di~~~~~~~lr----~~i~~v~Q~p~ 484 (643)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||. ++...+...+| ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999996 67777766543 57999999999
Q ss_pred CCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 006496 485 LFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAV 558 (643)
Q Consensus 485 lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~I 558 (643)
+|+ .|++||+.++.. ...+ +++..++++.++|.++.+..| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998 699999998621 1122 245677888888876654443 46999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHH
Q 006496 559 LLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 559 liLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~ 635 (643)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+ +...|.+.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~-p~~~~~~~~ 264 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN-PANDYVADF 264 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC-cchHHHHHH
Confidence 999999999999999999999988754 68999999999987 56999999999999999999999864 445555443
No 183
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.7e-45 Score=361.36 Aligned_cols=202 Identities=33% Similarity=0.490 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr~ 474 (643)
|+++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23589999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFA-GTIRENITYGA-----SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~-----~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
.++|+||+|.+|. .|++||+.++. .+...+++++++++..++.++....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 59999998751 11112456788888888877665544 3799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGR 612 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~ 612 (643)
|||++++|+++||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 47899999999999875 89999999985
No 184
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.7e-45 Score=360.70 Aligned_cols=203 Identities=30% Similarity=0.471 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH---HHHhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL---RSLRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~---~~lr~ 474 (643)
|+++|++++|+++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 358999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
.++|+||+|.+|+. |++||+.++.. ...+ ++++.++++.+++.+..+..| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 99999999999985 99999987521 1112 345677777777766554443 4799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999875 899999999974
No 185
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=374.04 Aligned_cols=217 Identities=30% Similarity=0.506 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC----CHHH
Q 006496 398 IELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH----HLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~----~~~~ 471 (643)
|+++||+++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13589999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 472 LRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 472 lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
+|+.|+|+||+| .+|+.|++|||.++.. ...+.++ +.++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6889999999987521 1133333 334444444431 1223445679999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988754 689999999999885 5999999999999999999998
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
.+
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 75
No 186
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-45 Score=358.04 Aligned_cols=202 Identities=32% Similarity=0.489 Sum_probs=177.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. . .|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDK-----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~-----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|++|+|.+|++ |++||+.++.... .+++++.++++.+++.+.....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999986 9999998763211 13457888899998887766655 3699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
++++|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 6899999999999865 9999999999998765
No 187
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7.6e-45 Score=376.54 Aligned_cols=213 Identities=28% Similarity=0.480 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 35899999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCC-CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGA-SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~-~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|+||++.+|. .|++||+.+.. ....+.. ++.++++.+++. +..++.++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999986 59999998531 1112322 344555555443 34555554 69999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||.++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998754 6899999999999865 99999999999999999999975
No 188
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.8e-45 Score=362.31 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ .++++|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCC---CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFAGTIRENITYGA---SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g~---~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|++|++.+|+.|++||+.++. ....+++++.++++..++.+ +.......+||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11112334555565555532 2234455689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEe-CCEEEEEcChh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLE-QGRVVEEGSHQ 620 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~-~G~Ive~G~~~ 620 (643)
++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 689999999999999999999994 77788889986
No 189
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=385.01 Aligned_cols=218 Identities=30% Similarity=0.479 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.++++ .|+++
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 4999999999963 358999999999999999999999999999999999999999999999999987764 57789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+||+|++.+|+. |++|||.|+.. ...+ .+++.++++..++.++.+..| .+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 99999998731 1122 245667777777776655544 479999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||+++|++||||||||+||..+...+.+.|++..+ +.|+|+|||+++.+ .-||+|++|++|+|++.|+++++..+ +
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~-p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH-P 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999888877643 68999999999986 56999999999999999999999974 4
Q ss_pred CcHH
Q 006496 628 AGAY 631 (643)
Q Consensus 628 ~g~y 631 (643)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 4444
No 190
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=365.98 Aligned_cols=204 Identities=28% Similarity=0.389 Sum_probs=179.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999964 35899999999999999999999999999999999999999999999998763 567889
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 477 ALVSQEPALFA-GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
+|++|++.+|+ .|++||+.++.. ...++++.++++..++.++... ...+||||||||++||||++++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999998 699999987632 2235677788888877665433 3357999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChh
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 620 (643)
|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999988643 689999999999875 59999999999999998765
No 191
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=374.04 Aligned_cols=219 Identities=29% Similarity=0.460 Sum_probs=182.0
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC----C-C
Q 006496 396 GHIELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS----H-H 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~----~-~ 468 (643)
+.|+++|++++|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 1358999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHHhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCHHH----HHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 469 LRSLRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
...+|++++|++|+| .+|+.|++|||.++.. ...+.++ +.++++..++ |.+ ........||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCHH
Confidence 567888999999998 4788899999987631 1123332 2333433333 222 123445689999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
||||++||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988754 689999999999875 599999999999999999
Q ss_pred hhHHhh
Q 006496 619 HQSLLA 624 (643)
Q Consensus 619 ~~eLl~ 624 (643)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 998865
No 192
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=368.57 Aligned_cols=221 Identities=31% Similarity=0.475 Sum_probs=190.7
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCC----
Q 006496 395 IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIR---- 465 (643)
Q Consensus 395 ~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~---- 465 (643)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999964 3589999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhcccEEEecCCCCCcccHHHHHhcCCC-C-----CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 466 SHHLRSLRRHIALVSQEPALFAGTIRENITYGAS-D-----KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 466 ~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~-----~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
..+...+|+.++|+||++.+|++|++||+.++.. . ...++++.++++.+++.+.+. +..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678999999999999999999999987521 0 112456777887777654333 33455567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999985 599999999999999999
Q ss_pred hhHHhhc
Q 006496 619 HQSLLAK 625 (643)
Q Consensus 619 ~~eLl~~ 625 (643)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9999764
No 193
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=363.26 Aligned_cols=218 Identities=26% Similarity=0.374 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~ 475 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999964 35899999999999999999999999999999999999999999999999999887654 6788
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
++|++|++.+|++ |++||+.++.. ..+.++..+.+ .+.++.++. ++.........||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999985 99999987631 12222222211 122222221 1111223456799999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+|+|+||||||++||+++.+.+.+.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++++..
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999998864 478999999999876 5699999999999999999999975
No 194
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=370.05 Aligned_cols=213 Identities=29% Similarity=0.462 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC--CCCHHHHhcc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR--SHHLRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~--~~~~~~lr~~ 475 (643)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999964 35899999999999999999999999999999999999999999999999985 3445678889
Q ss_pred cEEEecCCC--CCcccHHHHHhcCC-CCCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 476 IALVSQEPA--LFAGTIRENITYGA-SDKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 476 i~~v~Q~p~--lf~gTireNi~~g~-~~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++|+||+|. +|..|+.+|+.++. ....++ +++.++++..++.++. ++ ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQ----PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cC----CchhCCHHHHHHHHH
Confidence 999999986 67789999998741 111232 3455667777765543 22 235799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998864 4689999999999985 499999999999999999999875
No 195
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.3e-44 Score=360.93 Aligned_cols=209 Identities=28% Similarity=0.390 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---H
Q 006496 397 HIELEDVHFAYPARPN-VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---L 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---l 472 (643)
-|+++|++++|++... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974311 35899999999999999999999999999999999999999999999999998887654 3
Q ss_pred -hcccEEEecCCCCCcc-cHHHHHhcCC--CC---CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 473 -RRHIALVSQEPALFAG-TIRENITYGA--SD---KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 473 -r~~i~~v~Q~p~lf~g-TireNi~~g~--~~---~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
++.++|+||+|.+|++ |++||+.++. .. ....+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999985 9999997641 01 112356777888888877665554 3699999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~ 616 (643)
++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 6899999999999999999999999999864
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=368.12 Aligned_cols=219 Identities=31% Similarity=0.500 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~~ 469 (643)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999974 69999999999854 456
Q ss_pred HHHhcccEEEecCCCCCc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 470 RSLRRHIALVSQEPALFA-GTIRENITYGAS--DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~--~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
..+|+.++|++|++.+|+ .|++||+.++.. ...+ ++++.++++.+++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999986421 1111 234566777777654432 22334456799999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEe------CCEEEE
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLE------QGRVVE 615 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~------~G~Ive 615 (643)
|||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877799999999999875 599999997 899999
Q ss_pred EcChhHHhhc
Q 006496 616 EGSHQSLLAK 625 (643)
Q Consensus 616 ~G~~~eLl~~ 625 (643)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999863
No 197
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=377.30 Aligned_cols=228 Identities=25% Similarity=0.354 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCcEEEECCeeCCCCCHHHH
Q 006496 398 IELEDVHFAYPARPN-VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD----PLKGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~----~~~G~I~idG~di~~~~~~~l 472 (643)
++++|++++|+.... ..+|+||||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975311 368999999999999999999999999999999999997 489999999999999988776
Q ss_pred hc----ccEEEecCCC--CCc-ccHH----HHHhcCC--CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 473 RR----HIALVSQEPA--LFA-GTIR----ENITYGA--SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 473 r~----~i~~v~Q~p~--lf~-gTir----eNi~~g~--~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
++ +|+||||+|. +++ -|+. +|+.... .....++++.++++.+++.+.... ......+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhCC
Confidence 54 6999999995 443 2555 4544321 111123567778888887543211 234456799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEE 616 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~ 616 (643)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 689999999999984 6999999999999999
Q ss_pred cChhHHhhcCCCcHHHHH
Q 006496 617 GSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l 634 (643)
|+++++.++ +...|.+.
T Consensus 236 g~~~~~~~~-p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRA-PRHPYTQA 252 (326)
T ss_pred CCHHHHhhC-CCChHHHH
Confidence 999999975 45556553
No 198
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=365.27 Aligned_cols=213 Identities=28% Similarity=0.435 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999964 35899999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCC-C----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPAL-FAGTIRENITYGASDK-I----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~l-f~gTireNi~~g~~~~-~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||++.+ ++.|++||+.++.... . .++++.++++..++.++... ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 5679999998763111 1 23456677777777654433 235799999999999999
Q ss_pred Hc------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 552 VL------KNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 552 ll------~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
++ ++|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4689999999999886 5999999999999999999998
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
No 199
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-45 Score=363.81 Aligned_cols=212 Identities=36% Similarity=0.502 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.+||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 358999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-----CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-----DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-----~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|++|++.+|.+ |++||+.++.. +...++++.++++..++++++...| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 99999986521 1112456777788888877766555 4799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998764 7899999999999865 999999999999999999999863
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.85 Aligned_cols=225 Identities=29% Similarity=0.468 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEECCeeCCC--CCHH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGRDIRS--HHLR 470 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~-----~G~I~idG~di~~--~~~~ 470 (643)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++.. .+..
T Consensus 5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 789999999963 36899999999999999999999999999999999999874 8999999999875 3456
Q ss_pred HHhcccEEEecCCCCCcc-cHHHHHhcCCC-CCC-CHHHH----HHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 471 SLRRHIALVSQEPALFAG-TIRENITYGAS-DKI-DESEI----IEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~-~~e~i----~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
.+|+.++|++|++.+|++ |++||+.++.. ... .+++. .+.++..++++.+ ++.+++. ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 99999986421 111 23332 3334444444332 2334444 457999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hhcCCCcHHHH
Q 006496 623 LAKGPAGAYYS 633 (643)
Q Consensus 623 l~~~~~g~y~~ 633 (643)
+.+ +...+.+
T Consensus 235 ~~~-~~~~~~~ 244 (252)
T PRK14272 235 FTN-PRDERTE 244 (252)
T ss_pred HhC-cCcHHHH
Confidence 874 4444443
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.8e-44 Score=361.72 Aligned_cols=211 Identities=32% Similarity=0.469 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 358999999999999999999999999999999999999999999999999986653 478899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC-CC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASD-KI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~-~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|++ |++||+.++... .. .++++.++++..++.++.++. ..+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999986 999999876310 11 134556667776665554433 25799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999988654 6899999999998755 99999999999999999999986
No 202
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=359.64 Aligned_cols=209 Identities=30% Similarity=0.502 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++||+++|++. ..|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999632 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDK-----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~-----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||++.+|.+ |++||+.++.... .+++++.++++.+++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999986 9999998752111 22456888999999988777666 3699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999988754 6899999999999865 99999999999999999999986
No 203
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=368.79 Aligned_cols=214 Identities=27% Similarity=0.396 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999974 3589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+|+||++.+|. .|++||+.++..+ +..+++++++++..++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999885 5999999875211 1123456777888777665433 3457999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988754 689999999999875 59999999999999999999987
Q ss_pred h
Q 006496 624 A 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
No 204
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=371.46 Aligned_cols=217 Identities=28% Similarity=0.504 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC----CHH
Q 006496 397 HIELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH----HLR 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~----~~~ 470 (643)
.|+++|++++|++.. ..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13689999999999999999999999999999999999999999999999998754 346
Q ss_pred HHhcccEEEecCC--CCCcccHHHHHhcCCC-CCCCHH----HHHHHHHHhccH-HHHHhcccccccccCCCCCCCChhH
Q 006496 471 SLRRHIALVSQEP--ALFAGTIRENITYGAS-DKIDES----EIIEAGKAANAH-DFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 471 ~lr~~i~~v~Q~p--~lf~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~-~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
..|+.++|+||+| .+|+.|++|||.++.. ...+.+ ++.++++.++++ ++ ......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL-----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hhCCcccCCHHH
Confidence 6788999999998 5888899999987521 122322 345555555553 22 233345799999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChh
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 620 (643)
|||++||||++.+|++|||||||++||+++.+.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998874 3689999999999875 69999999999999999999
Q ss_pred HHhh
Q 006496 621 SLLA 624 (643)
Q Consensus 621 eLl~ 624 (643)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8875
No 205
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.5e-45 Score=360.45 Aligned_cols=199 Identities=29% Similarity=0.483 Sum_probs=171.0
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999964 35899999999999999999999999999999999999999999999998764 57889999
Q ss_pred EecCCCC---CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 479 VSQEPAL---FAGTIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 479 v~Q~p~l---f~gTireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+||+|.+ |+.|++||+.++... ...++++.++++..++.++.... ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999987 668999999875321 01234677788888887665432 247999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
+||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998865 56899999999999865 8999999986 66654
No 206
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.5e-44 Score=366.72 Aligned_cols=213 Identities=30% Similarity=0.452 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999964 36899999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEecCCC-CCcccHHHHHhcCCCC-------C--CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 478 LVSQEPA-LFAGTIRENITYGASD-------K--IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 478 ~v~Q~p~-lf~gTireNi~~g~~~-------~--~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
|+||++. .+..|++||+.++... . .+++++.++++.+++.+..+. ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 9999996 4567999999875211 0 112356677777776554332 34579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++.+|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999988754 68999999999999 4699999999999999999999875
No 207
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=371.21 Aligned_cols=226 Identities=31% Similarity=0.483 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~~--~~ 469 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4899999999964 358999999999999999999999999999999999864 4999999999998653 33
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|++++|++|+|.+|+.|++|||.++.. ... + ++++.++++.+++.+.+. +. .......||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~----~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DR----LDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hH----hhCChhhCCHHHH
Confidence 467889999999999999999999987621 011 1 234556666666543322 12 2344567999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999864 999999999999999999999
Q ss_pred hhcCCCcHHHH
Q 006496 623 LAKGPAGAYYS 633 (643)
Q Consensus 623 l~~~~~g~y~~ 633 (643)
.++ +...|.+
T Consensus 269 ~~~-~~~~~~~ 278 (286)
T PRK14275 269 FTN-PKDRMTE 278 (286)
T ss_pred HhC-CCcHHHH
Confidence 864 3333444
No 208
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-45 Score=356.47 Aligned_cols=218 Identities=32% Similarity=0.472 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCe---eCCCCCHHHHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR---DIRSHHLRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~---di~~~~~~~lr 473 (643)
.|+++|++..|+.. ++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. +.-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 47889999999743 5799999999999999999999999999999999999999999999999 66663 3344
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCCC-------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGASD-------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~~-------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
++||+|+|+.-||. .||++||.||..- .-...++.+.|+.|+|..+-+.-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999996 6999999999511 123457788899999988766666 5799999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHH
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eL 622 (643)
+||||||...|++|+||||.+|||++..+.+++-+++... +.|+++|||+.+.+ +-||||+||++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999888877644 68999999999875 67999999999999999999999
Q ss_pred hhcCCCcHH
Q 006496 623 LAKGPAGAY 631 (643)
Q Consensus 623 l~~~~~g~y 631 (643)
... ++..|
T Consensus 226 ~~~-P~s~f 233 (345)
T COG1118 226 YDH-PASRF 233 (345)
T ss_pred hcC-CCccc
Confidence 875 55544
No 209
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-44 Score=376.54 Aligned_cols=229 Identities=24% Similarity=0.382 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEECCeeCCCCCHHHH
Q 006496 397 HIELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~---~G~I~idG~di~~~~~~~l 472 (643)
-++++|++++|+.. ....+++|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999642 1346899999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----cccEEEecCC--CCCc-ccHHHHHhcCC--CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 473 R----RHIALVSQEP--ALFA-GTIRENITYGA--SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 473 r----~~i~~v~Q~p--~lf~-gTireNi~~g~--~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
| ++|+||+|+| .+++ -|+.+|+.... ....+.+ ++.++++.+++ |++.+ .++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 4 4799999999 4554 37777664210 0112332 34445555444 33322 2456677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEE 616 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~ 616 (643)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988755 689999999999986 5999999999999999
Q ss_pred cChhHHhhcCCCcHHHHH
Q 006496 617 GSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 617 G~~~eLl~~~~~g~y~~l 634 (643)
|+++++.++ +...|.+.
T Consensus 244 g~~~~i~~~-p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQ-PSHPYSIG 260 (330)
T ss_pred CCHHHHHhC-CCCHHHHH
Confidence 999999975 55566663
No 210
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-44 Score=365.72 Aligned_cols=220 Identities=22% Similarity=0.420 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~ 475 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 3899999999963 368999999999999999999999999999999999999999999999999998876655 456
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCC--------------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDK--------------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~--------------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
++|+||+|.+|++ |++||+.++.... ..+++ .+.. ....++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999752100 00000 0000 1122333333 444445556678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.+ ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988754 6899999999999865 9999999999999999
Q ss_pred ChhHHhh
Q 006496 618 SHQSLLA 624 (643)
Q Consensus 618 ~~~eLl~ 624 (643)
+++++..
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9999875
No 211
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=364.48 Aligned_cols=219 Identities=30% Similarity=0.434 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~--~~ 469 (643)
.+.+++.+++|.+ .++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.+||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3899999999963 3589999999999999999999999999999999999986 799999999998653 44
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC----CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS----DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~----~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
..+|+.++|+||++.+|+.|++|||.++.. .+..++++.++++.+++.+.+... .++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHH
Confidence 567889999999999999999999987631 111235778888888887665432 345667899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEe--------CCEEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLE--------QGRVVEE 616 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~--------~G~Ive~ 616 (643)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999998877789999999999875 599999996 8999999
Q ss_pred cChhHHhhc
Q 006496 617 GSHQSLLAK 625 (643)
Q Consensus 617 G~~~eLl~~ 625 (643)
|++++++++
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999863
No 212
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.9e-44 Score=358.68 Aligned_cols=213 Identities=33% Similarity=0.478 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH---HHHh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL---RSLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~---~~lr 473 (643)
|+++||+++|++.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1258999999999999999999999999999999999999999999999999988774 5788
Q ss_pred cccEEEecCC--CCC-cccHHHHHhcCCC---CCCCHHHHHHHHHHhccHHHHHhcccccc-cccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEP--ALF-AGTIRENITYGAS---DKIDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p--~lf-~gTireNi~~g~~---~~~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRi 546 (643)
++++|++|+| .++ ..|++||+.++.. ....+++..++. ++.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 4799999975411 111122211110 1222322 332 234455568999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
+||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998765 689999999999987 59999999999998865
No 213
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=368.62 Aligned_cols=214 Identities=30% Similarity=0.510 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC--CCHHHHhcc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS--HHLRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~--~~~~~lr~~ 475 (643)
|+++|++++|+.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+++. .+...+|++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999632 358999999999999999999999999999999999999999999999999863 334568899
Q ss_pred cEEEecCC--CCCcccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 476 IALVSQEP--ALFAGTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 476 i~~v~Q~p--~lf~gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
|+|+||+| .+|+.|++|||.++.. ...+ .+++.++++.+++.++... . ...||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHH
Confidence 99999998 5788999999987521 1122 2346667777777544322 2 34799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||++.+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998754 789999999999986 599999999999999999999875
No 214
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.2e-44 Score=373.58 Aligned_cols=213 Identities=30% Similarity=0.434 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEecCCCCCc-ccHHHHHhcC-CCCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYG-ASDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g-~~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|+||++.+|. .|++||+.+. .....+++ ++.++++.+++.+ .+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 5999999752 11123333 2334455544433 344444 469999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998874 3689999999999986 499999999999999999999975
No 215
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=371.55 Aligned_cols=219 Identities=35% Similarity=0.559 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-----CCCcEEEECCeeCCCC--CH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGRDIRSH--HL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-----~~~G~I~idG~di~~~--~~ 469 (643)
.|+++|++++|++ .++|+++||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999964 358999999999999999999999999999999999986 6899999999998753 45
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCC------------------CCCHHHHHHHHHHhccHHHHHhccccccccc
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASD------------------KIDESEIIEAGKAANAHDFIAGLYEGYDTWC 531 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~------------------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~v 531 (643)
..+|++++|+||++.+|++|++||+.++... ...++++.++++.+++.+. +++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHHh
Confidence 6788999999999999999999999975210 0113446666666665443 33445
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEE-EEEe
Q 006496 532 GDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDII-AVLE 609 (643)
Q Consensus 532 ge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I-~vl~ 609 (643)
.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6667889999999999999999999999999999999999999999999998778999999999999765 9997 5789
Q ss_pred CCEEEEEcChhHHhhc
Q 006496 610 QGRVVEEGSHQSLLAK 625 (643)
Q Consensus 610 ~G~Ive~G~~~eLl~~ 625 (643)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999999863
No 216
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=364.12 Aligned_cols=219 Identities=32% Similarity=0.511 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--C---CCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~--~---~~G~I~idG~di~~--~~~ 469 (643)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3899999999974 358999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCC-CCC-C----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGAS-DKI-D----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-~~~-~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
..+|+.++|+||++.+|+.|+++|+.++.. ... . ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 577889999999999999999999986521 111 1 234556666666654332 223444568999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 4999999999999999999999
Q ss_pred hhc
Q 006496 623 LAK 625 (643)
Q Consensus 623 l~~ 625 (643)
..+
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 864
No 217
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.4e-44 Score=357.46 Aligned_cols=204 Identities=30% Similarity=0.429 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---Hhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---LRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---lr~ 474 (643)
|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999522 35899999999999999999999999999999999999999999999999998876543 788
Q ss_pred ccEEEecCCCCC-cccHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALF-AGTIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf-~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
.++|+||+|.+| +.|++||+.++.. ...+++ ++.++++..++.++.... ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence 999999999975 5799999987521 112332 455667777666554433 35799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVV 614 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv 614 (643)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999998874 36899999999999876 8999999999985
No 218
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=362.64 Aligned_cols=217 Identities=23% Similarity=0.407 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~i 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 899999999964 36899999999999999999999999999999999999999999999999998887644 57889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|+||++.+|++ |++||+.+... ...+.++.+ ..+.++++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999985 99999987521 112222211 1122334443 4444445556789999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+ ..||+|++|++|++++.|++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999988764 378999999999776 5599999999999999999999975
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.1e-44 Score=343.38 Aligned_cols=172 Identities=43% Similarity=0.708 Sum_probs=162.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999753 245899999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|+|.+|++|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEEeCCEE
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQGRV 613 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~G~I 613 (643)
+|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999999988754 6899999999999999999999999975
No 220
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=363.99 Aligned_cols=220 Identities=33% Similarity=0.512 Sum_probs=188.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC-----CcEEEECCeeCCC--CC
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGRDIRS--HH 468 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~-----~G~I~idG~di~~--~~ 468 (643)
+.|+++|++++|++ ..+|+|+||+|++||.++|+|++|||||||+++|.|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 25899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHHhcCCC-----CCCC-HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 LRSLRRHIALVSQEPALFAGTIRENITYGAS-----DKID-ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~-----~~~~-~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|+.++|++|++.+|+.|++||+.++.. +..+ ++++.++++.+++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986410 1111 2446677888877665543 2344567899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeC-----CEEE
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQ-----GRVV 614 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~-----G~Iv 614 (643)
|||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998753 4799999999999886 5999999999 9999
Q ss_pred EEcChhHHhhc
Q 006496 615 EEGSHQSLLAK 625 (643)
Q Consensus 615 e~G~~~eLl~~ 625 (643)
+.|+++++.++
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999864
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=365.18 Aligned_cols=219 Identities=31% Similarity=0.452 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCC--CCH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRS--HHL 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~--~~~ 469 (643)
-|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 4999999999964 3589999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhcccEEEecCCCCCcccHHHHHhcCCCC-C---CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 470 RSLRRHIALVSQEPALFAGTIRENITYGASD-K---IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~-~---~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
..+|++++|+||++.+|+.|++|||.++... . ..++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999999999999876311 0 123456677888877655432 2334456799999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEe---------CCEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLE---------QGRVVE 615 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~---------~G~Ive 615 (643)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877899999999999885 599999998 899999
Q ss_pred EcChhHHhhc
Q 006496 616 EGSHQSLLAK 625 (643)
Q Consensus 616 ~G~~~eLl~~ 625 (643)
.|+++++..+
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999864
No 222
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=355.13 Aligned_cols=202 Identities=26% Similarity=0.466 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 358999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||++.+|++ |++||+.++.. ...+ ++++.++++..++.+.. .....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHH
Confidence 99999999985 99999987421 0111 23455556555554433 33446799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998764 36899999999998865 9999999999998865
No 223
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4e-44 Score=353.48 Aligned_cols=203 Identities=33% Similarity=0.557 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++||+++|+. .++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 368999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDK-----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~-----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|.+ |++||+.++.... .+++++.++++..++.+.....|. +||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 99999999975 9999998642111 134567788899888877666653 699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
++++|+++||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 6899999999998764 99999999999999885
No 224
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.4e-44 Score=371.61 Aligned_cols=212 Identities=22% Similarity=0.420 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.. ....+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 799999999963 458999999999999999999999999999999999999999999999999987 4567889999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|+||+|.+|++ |++||+.+... ...+ .+++.++++..++.+. ......+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986321 1122 2345555555555443 334456799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998778999999999998865 99999999999999999999975
No 225
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-44 Score=355.72 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC--CCHHHHhcc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS--HHLRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~--~~~~~lr~~ 475 (643)
|+++|++++|++ .++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 358999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEecCCCCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 476 IALVSQEPALFA-GTIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 476 i~~v~Q~p~lf~-gTireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++|+||+|.+|+ .|++||+.++.. ...+. +++.++++..++.+.+.. ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 999999999997 599999987521 12222 244555555555544333 335799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
|||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.+ ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 6899999999999865 999999999975
No 226
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-44 Score=362.23 Aligned_cols=228 Identities=29% Similarity=0.440 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC------eeCCCCCHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG------RDIRSHHLR 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG------~di~~~~~~ 470 (643)
.|+++|++++|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4999999999964 3589999999999999999999999999999999999999997666554 677777888
Q ss_pred HHhcccEEEecCCCCCcc-cHHHHHhcCCC-CCC-CHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 471 SLRRHIALVSQEPALFAG-TIRENITYGAS-DKI-DES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~-~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
.+|+.++|+||+|.+|.+ |++||+.++.. ... +++ ++.++++..++++++. ...+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 899999999999999986 99999987521 011 222 3455666666654331 123345667999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eL 622 (643)
||++||||++++|+++||||||++||..+.+.+.+.|.+..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 56999999999999999999999
Q ss_pred hhcCCCcHHHHHH
Q 006496 623 LAKGPAGAYYSLV 635 (643)
Q Consensus 623 l~~~~~g~y~~l~ 635 (643)
.+. +...|.+.+
T Consensus 240 ~~~-~~~~~~~~~ 251 (257)
T PRK14246 240 FTS-PKNELTEKY 251 (257)
T ss_pred HhC-CCcHHHHHH
Confidence 864 444566554
No 227
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=378.47 Aligned_cols=210 Identities=31% Similarity=0.450 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC----CHHHHh
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH----HLRSLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~----~~~~lr 473 (643)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999632 23 89999999999999999999999999999999999999999999998753 245678
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
++++||+|++.+|+ .|++|||.++. ...+++++.++++..++.++.+..| .+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 89999999999997 59999999873 2345677888888888877665554 47999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
+++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999999999999999999999988764 5899999999998754 999999999999999999999975
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-44 Score=356.76 Aligned_cols=211 Identities=30% Similarity=0.512 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|++|++.+|+ .|++||+.++.. ... .++++.++++.+++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999995 699999987521 111 2345677788888877665544 4699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
++++|++++|||||++||+.+.+.+.+.+++..+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988654 7899999999999875 999999999999999999999863
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.8e-44 Score=361.85 Aligned_cols=228 Identities=26% Similarity=0.379 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCee-----CCCCCHHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRD-----IRSHHLRS 471 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~d-----i~~~~~~~ 471 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3899999999964 358999999999999999999999999999999999999999999999999 87776654
Q ss_pred ----HhcccEEEecCCC--CCc-ccHHHHHhcCC--CCCCCHHHHHHHHHHhccHHHHHhcccccc-cccCCCCCCCChh
Q 006496 472 ----LRRHIALVSQEPA--LFA-GTIRENITYGA--SDKIDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDRGLQLSGG 541 (643)
Q Consensus 472 ----lr~~i~~v~Q~p~--lf~-gTireNi~~g~--~~~~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~G~~LSgG 541 (643)
+|+.++|+||++. ++. .|+.+|+.+.. ....+.+++.+ ..+++++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 343 48888886421 00111122211 124455555 232 3456677889999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
||||++||||++++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988654 689999999999997 599999999999999999
Q ss_pred hhHHhhcCCCcHHHHHH
Q 006496 619 HQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 619 ~~eLl~~~~~g~y~~l~ 635 (643)
++++..+ +...|.+.+
T Consensus 236 ~~~~~~~-~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDD-PQHPYTQLL 251 (258)
T ss_pred HHHHhcC-CCCHHHHHH
Confidence 9999864 334565543
No 230
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-44 Score=372.31 Aligned_cols=228 Identities=22% Similarity=0.328 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCcEEEECCeeCCCCCHHHH
Q 006496 398 IELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD----PLKGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 398 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~----~~~G~I~idG~di~~~~~~~l 472 (643)
|+++|++++|+.. ....+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7999999999642 13468999999999999999999999999999999999986 589999999999999887765
Q ss_pred h----cccEEEecCCCC--Cc-ccHHHHHhcCC----C-C----C--CCHHHHHHHHHHhccHHHHHhcccccccccCCC
Q 006496 473 R----RHIALVSQEPAL--FA-GTIRENITYGA----S-D----K--IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534 (643)
Q Consensus 473 r----~~i~~v~Q~p~l--f~-gTireNi~~g~----~-~----~--~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~ 534 (643)
+ +.|+||+|+|.. ++ .|+.+|+.... . . . ..++++.++++.++|++.-.. ....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--------MRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--------HhCC
Confidence 3 479999999973 33 48999986410 0 0 0 113467788888888642111 1222
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
...||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 357999999999999999999999999999999999999999999998764 6899999999999965 9999999999
Q ss_pred EEEEEcChhHHhhcCCCcHHHHH
Q 006496 612 RVVEEGSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 612 ~Ive~G~~~eLl~~~~~g~y~~l 634 (643)
+|+|.|+++++.++ +...|.+.
T Consensus 236 ~ive~g~~~~i~~~-p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTT-PHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhC-CCCHHHHH
Confidence 99999999999874 55567653
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-44 Score=362.74 Aligned_cols=213 Identities=28% Similarity=0.400 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC--------CcEEEECCeeCCCCCH
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL--------KGVVKIDGRDIRSHHL 469 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~--------~G~I~idG~di~~~~~ 469 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35899999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcccEEEecCCC-CCcccHHHHHhcCCCCC------C---CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 470 RSLRRHIALVSQEPA-LFAGTIRENITYGASDK------I---DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 470 ~~lr~~i~~v~Q~p~-lf~gTireNi~~g~~~~------~---~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
..+|+.++|+||++. +|+.|++||+.++..+. . ++++++++++..++. +..+.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 57889999998763111 1 123455566665554 33444556899
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEE
Q 006496 540 GGQKQRIAIARAVL---------KNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAV 607 (643)
Q Consensus 540 gGQrQRiaLARAll---------~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~v 607 (643)
||||||++||||++ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999988754 689999999999986 5999999
Q ss_pred EeCCEEEEEcChhHHhh
Q 006496 608 LEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 608 l~~G~Ive~G~~~eLl~ 624 (643)
|++|+|++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
No 232
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.5e-44 Score=360.75 Aligned_cols=215 Identities=24% Similarity=0.354 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEECCeeCCCCCHHHH-hc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGRDIRSHHLRSL-RR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~--~~~~G~I~idG~di~~~~~~~l-r~ 474 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 35899999999999999999999999999999999994 7999999999999998887665 45
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCC--C------CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 475 HIALVSQEPALFAG-TIRENITYGAS--D------KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~--~------~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
.++|+||+|.+|++ |++||+.+... . ..+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 59999999999986 89999975311 0 011 13345555555543211 122221 249999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh--cCEEEEEeCCEEEEEcC
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN--CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~--~D~I~vl~~G~Ive~G~ 618 (643)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999988753 6899999999999976 79999999999999999
Q ss_pred hhHHhh
Q 006496 619 HQSLLA 624 (643)
Q Consensus 619 ~~eLl~ 624 (643)
++++..
T Consensus 229 ~~~~~~ 234 (243)
T TIGR01978 229 VELAKE 234 (243)
T ss_pred HHHhcc
Confidence 986543
No 233
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.1e-44 Score=362.97 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEECCeeCCCC-----C
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGRDIRSH-----H 468 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~---~G~I~idG~di~~~-----~ 468 (643)
-|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999964 35899999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcccEEEecCCCCCcc-cHHHHHhcCCCC-------------CCCHHHHHHHHHHhccHHHHHhcccccccccCCC
Q 006496 469 LRSLRRHIALVSQEPALFAG-TIRENITYGASD-------------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDR 534 (643)
Q Consensus 469 ~~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~~-------------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~ 534 (643)
...+|+.++|+||++.+|++ |++||+.++... ...++++.++++..++.+.++. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 45678899999999999884 999999876211 0112356667777666554433 3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCC
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQG 611 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G 611 (643)
...||||||||++||||++.+|++|||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+ ..||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 357999999999999999999999999999999999999999999998753 68999999999976 569999999999
Q ss_pred EEEEEcChhHH
Q 006496 612 RVVEEGSHQSL 622 (643)
Q Consensus 612 ~Ive~G~~~eL 622 (643)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999997
No 234
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.9e-44 Score=372.65 Aligned_cols=213 Identities=30% Similarity=0.448 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.+
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999964 35899999999999999999999999999999999999999999999999997654 5788999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCC-CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGA-SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~-~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|+||++.+|. .|++||+.+.. ....+.+ ++.++++.+++ ++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCChh----hCCHHHHHHHHHHH
Confidence 99999999874 59999998531 1112322 23344444443 444555554 69999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999988754 7899999999999864 99999999999999999999975
No 235
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.4e-43 Score=359.04 Aligned_cols=228 Identities=27% Similarity=0.369 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC----CCcEEEECCeeCCCCCHHHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~----~~G~I~idG~di~~~~~~~l 472 (643)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 2589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEecCCC-CCc--ccHHHHHhcC---CCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 473 RRHIALVSQEPA-LFA--GTIRENITYG---ASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 473 r~~i~~v~Q~p~-lf~--gTireNi~~g---~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
++.++||||++. .|. .|+.+|+.+. .....++++++++++.+++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 444 4888886431 0112345678888888877542 1234455678999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988754 689999999999986 59999999999999999999998
Q ss_pred hcCCCcHHHHHHHhh
Q 006496 624 AKGPAGAYYSLVSLQ 638 (643)
Q Consensus 624 ~~~~~g~y~~l~~~q 638 (643)
++.....++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 642233444566544
No 236
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.6e-44 Score=368.67 Aligned_cols=200 Identities=26% Similarity=0.435 Sum_probs=173.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc-cHH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG-TIR 491 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g-Tir 491 (643)
.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999976 456788999999999999986 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCC
Q 006496 492 ENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATS 566 (643)
Q Consensus 492 eNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TS 566 (643)
||+.+... ...+ ++++.++++.+++.+.. ++. ..+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRP----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986421 1122 34566677777765443 222 34799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 567 ALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 567 aLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999998875 36899999999999865 99999999999999999999975
No 237
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.1e-43 Score=360.04 Aligned_cols=228 Identities=27% Similarity=0.428 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH-
Q 006496 398 IELEDVHFAYPAR------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR- 470 (643)
Q Consensus 398 I~~~nvsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~- 470 (643)
|+++||+|+|+.. .+.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 024689999999999999999999999999999999999999999999999999887653
Q ss_pred --HHhcccEEEecCCC--CC-cccHHHHHhcCCC--CCCCHHHHHHHHHHhccHHHHHhccccccc-ccCCCCCCCChhH
Q 006496 471 --SLRRHIALVSQEPA--LF-AGTIRENITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDT-WCGDRGLQLSGGQ 542 (643)
Q Consensus 471 --~lr~~i~~v~Q~p~--lf-~gTireNi~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt-~vge~G~~LSgGQ 542 (643)
.+|+.++|++|++. ++ ..|+++|+.+... ...+.++ ....+++.++.+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 47889999999983 44 4699999864310 0112111 111223344433 4543 3455667899999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcCh
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~ 619 (643)
|||++||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988754 6899999999999974 999999999999999999
Q ss_pred hHHhhcCCCcHHHHH
Q 006496 620 QSLLAKGPAGAYYSL 634 (643)
Q Consensus 620 ~eLl~~~~~g~y~~l 634 (643)
+++.. ..+.|..-
T Consensus 237 ~~~~~--~~~~~~~~ 249 (268)
T PRK10419 237 GDKLT--FSSPAGRV 249 (268)
T ss_pred hhccC--CCCHHHHH
Confidence 99986 44545443
No 238
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-43 Score=353.73 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEECCeeCCCCCHHHHh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~---~~~G~I~idG~di~~~~~~~lr 473 (643)
++|+||+|+|+..+ ..++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997542 3579999999999999999999999999999999999999 99999999999875 35688
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCC---CCCCHHHHHHHHHHhccHH-HHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGAS---DKIDESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~---~~~~~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++++|+||++.+|++ |++||+.++.. +....++.. ....++ .++.+ |++.........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----KKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHH----HHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 899999999999997 99999987521 011111111 001111 12211 23222334456899999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCc-ch-hhhcCEEEEEeCCEEEEEc
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRL-ST-IQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl-~~-i~~~D~I~vl~~G~Ive~G 617 (643)
|||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++ .. ...||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998764 368999999998 34 5679999999999999876
No 239
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=356.47 Aligned_cols=203 Identities=26% Similarity=0.412 Sum_probs=173.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3589999999999999999999999999999999999999999999999998642 34689
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
|++|++.+|+ .|++||+.++.. ...+ ++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999997 599999987521 1122 2346667777766554433 345799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEe--CCEEEEEcCh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLE--QGRVVEEGSH 619 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~--~G~Ive~G~~ 619 (643)
++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999998864 3789999999999885 499999999 5999999865
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.6e-43 Score=349.45 Aligned_cols=205 Identities=29% Similarity=0.428 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH---HHh
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR---SLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~---~lr 473 (643)
++++|++++|++.. ...+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24689999999999999999999999999999999999999999999999999877753 468
Q ss_pred cccEEEecCCCCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 474 RHIALVSQEPALFA-GTIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~-gTireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+.++|+||+|.+|. .|+.||+.++.. +..+. +++.++++.+++.+++...| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999998 699999987521 11232 34566677777766665554 47999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEE
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRV 613 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~I 613 (643)
+||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988764 6999999999998888999999999986
No 241
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-43 Score=361.37 Aligned_cols=214 Identities=32% Similarity=0.514 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++.+|+. ...+|+||||+|++||.+|++||+|||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 23689999999999999999999999999999999999999999999999998776 78899999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCC----CC-CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGA----SD-KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~----~~-~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
||+||+|.+++. |++||+.|.. .+ ...++++.++++..+|.+.- +.. -..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHH
Confidence 999999998876 9999998742 11 12356788899998887621 222 3469999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~--~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||+.+|++|||||||++||+.+...+.+.|+++.++ +||++.||.++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999998774 699999999999987 99999999999999999999875
No 242
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.2e-43 Score=371.78 Aligned_cols=207 Identities=31% Similarity=0.464 Sum_probs=178.1
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC----HHHHhcccE
Q 006496 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH----LRSLRRHIA 477 (643)
Q Consensus 402 nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~----~~~lr~~i~ 477 (643)
|++++|++. . + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999632 2 5 999999999999999999999999999999999999999999999987543 346788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
|++|++.+|+. |++||+.++.. ... ++++.++++..++.+..+.. ..+||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999999975 99999998632 111 23466667666665544433 357999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999999999999988754 6899999999998865 999999999999999999999874
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.7e-43 Score=346.92 Aligned_cols=206 Identities=25% Similarity=0.369 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++||+++|++ .++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
|+||++.+|. .|++||+.++.. ...+++++.++++..++++..+.- ..+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 599999986421 123567788888888887654432 247999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999988753 689999999999985 599999999999999999765
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.6e-42 Score=351.35 Aligned_cols=228 Identities=27% Similarity=0.400 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCee-----CCCCCHHH
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRD-----IRSHHLRS 471 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~d-----i~~~~~~~ 471 (643)
.|+++||+++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999642 58999999999999999999999999999999999999999999999988 77776554
Q ss_pred ----HhcccEEEecCCC--C-CcccHHHHHhcCC--CCCCCHHHHHHHHHHhccHHHHHhcccccc-cccCCCCCCCChh
Q 006496 472 ----LRRHIALVSQEPA--L-FAGTIRENITYGA--SDKIDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDRGLQLSGG 541 (643)
Q Consensus 472 ----lr~~i~~v~Q~p~--l-f~gTireNi~~g~--~~~~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~G~~LSgG 541 (643)
+++.++|++|+|. + +..|+.+|+.+.. .......+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 2 3458888885320 000011111 12234455555 333 3455667789999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988653 6899999999999874 99999999999999999
Q ss_pred hhHHhhcCCCcHHHHHH
Q 006496 619 HQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 619 ~~eLl~~~~~g~y~~l~ 635 (643)
++++..+ +...|.+++
T Consensus 233 ~~~~~~~-~~~~~~~~~ 248 (253)
T TIGR02323 233 TDQVLDD-PQHPYTQLL 248 (253)
T ss_pred HHHHhcC-CCCHHHHHH
Confidence 9999864 444565544
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-43 Score=332.65 Aligned_cols=170 Identities=36% Similarity=0.639 Sum_probs=157.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999964 25899999999999999999999999999999999999999999999999998765 67888999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 478 LVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
|+||+|.+|.+ |++||+. ||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EEecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 99999999987 9999983 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEE
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRV 613 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~I 613 (643)
+++||||||++||+.+.+.+.+.|++..+ +.|+|++||+.+.+. .||+|++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999998754 589999999999887 5999999999974
No 246
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-43 Score=340.13 Aligned_cols=190 Identities=23% Similarity=0.373 Sum_probs=163.6
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEECCeeCCCCCHHHHh
Q 006496 398 IELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 398 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~---~~~G~I~idG~di~~~~~~~lr 473 (643)
+.++||+|.|+.. .+.++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.+||.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999853 34579999999999999999999999999999999999999 89999999999998765 4678
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
++++|++|++.+|.+ |++|||.++.. .. .+ +....||||||||++||||+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~-----------------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR--CK-----------------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh--hc-----------------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 889999999998875 99999976521 10 12 23357999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccC-cchh-hhcCEEEEEeCCEEEEEc
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHR-LSTI-QNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHr-l~~i-~~~D~I~vl~~G~Ive~G 617 (643)
+++|+++||||||++||+++.+.+.+.|++..+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998755 4576766555 5555 569999999999999865
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-43 Score=333.56 Aligned_cols=172 Identities=44% Similarity=0.639 Sum_probs=159.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC--HHHHhcc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH--LRSLRRH 475 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~--~~~lr~~ 475 (643)
|+++|++++|++ .++++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 35899999999999999999999999999999999999999999999999998876 5678899
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
++|++|+|.+|.+ |++||+.+. ||||||||++||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999999999865 999998542 99999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCE
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGR 612 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~ 612 (643)
+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999988765 489999999999998 599999999985
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=330.80 Aligned_cols=171 Identities=55% Similarity=0.875 Sum_probs=161.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. ...+++|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999753 235899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999998899999999985
No 249
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3e-42 Score=347.45 Aligned_cols=208 Identities=25% Similarity=0.419 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 3899999999964 3589999999999999999999999999999999999999999999987 2469
Q ss_pred EEEecCCCCCc---ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFA---GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~---gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|+||++.++. .|+++|+.+.+ ..+++++.++++.+++.+++... ...||||||||++||||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP--GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALL 136 (251)
T ss_pred EEeccccccccccChhHHHHHhccc--cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99999998875 48999987652 35677889999999988766443 3479999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhcCCCcH
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAKGPAGA 630 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~ 630 (643)
++|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++ +|++.|+++++.. .+.
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~---~~~ 212 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL---HPE 212 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC---CHH
Confidence 99999999999999999999999999988754 689999999999985 5999999965 7999999999874 345
Q ss_pred HHHHH
Q 006496 631 YYSLV 635 (643)
Q Consensus 631 y~~l~ 635 (643)
|.+++
T Consensus 213 ~~~~~ 217 (251)
T PRK09544 213 FISMF 217 (251)
T ss_pred HHHHh
Confidence 66665
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-42 Score=342.69 Aligned_cols=200 Identities=31% Similarity=0.447 Sum_probs=169.0
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC----CHHHHhc
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH----HLRSLRR 474 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~----~~~~lr~ 474 (643)
++ |++++|++. .+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 899999753 33 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ccEEEecCCCCCc-ccHHHHHhcCCCCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 475 HIALVSQEPALFA-GTIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 475 ~i~~v~Q~p~lf~-gTireNi~~g~~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
+++|+||++.+|+ .|++||+.++.. ..+ ++++.++++..++.+. .......||||||||++||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHL-----------LNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhH-----------hhcCcccCCHHHHHHHHHH
Confidence 9999999999996 599999987631 112 2345555555555433 3445568999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988754 689999999999985 59999999999999876
No 251
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.8e-42 Score=349.56 Aligned_cols=215 Identities=24% Similarity=0.368 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl--~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 3899999999964 3589999999999999999999999999999999998 6899999999999999988776665
Q ss_pred -ccEEEecCCCCCcc-cHHHHHhcCCCC--------CCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 -HIALVSQEPALFAG-TIRENITYGASD--------KID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 -~i~~v~Q~p~lf~g-TireNi~~g~~~--------~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
.++|++|++.+|++ |+++|+.++... +.+ .+++.++++.+++.+. -.+..++ ..|||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSg 154 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSG 154 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCH
Confidence 48999999999986 899998764210 011 1234555665555311 1222222 14999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh--cCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN--CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~--~D~I~vl~~G~Ive~G 617 (643)
|||||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999988754 7899999999999875 8999999999999999
Q ss_pred ChhHHh
Q 006496 618 SHQSLL 623 (643)
Q Consensus 618 ~~~eLl 623 (643)
+++.+.
T Consensus 235 ~~~~~~ 240 (252)
T CHL00131 235 DAELAK 240 (252)
T ss_pred Chhhhh
Confidence 998443
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=352.90 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHh-cc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLR-RH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr-~~ 475 (643)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 48999999999632 358999999999999999999999999999999999999999999999998752 233 46
Q ss_pred cEEEecCCCC---CcccHHHHHhcCCCC---------CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 476 IALVSQEPAL---FAGTIRENITYGASD---------KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 476 i~~v~Q~p~l---f~gTireNi~~g~~~---------~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
++|+||+|.+ +..++++|+.++... ..+++++.++++..++.++. ++.+ ..||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHH
Confidence 9999999875 456899998754110 11234566777888776654 3333 46999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~e 621 (643)
||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+++++ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999988754 68999999999887 459999777 899999999999
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 253
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-43 Score=340.24 Aligned_cols=225 Identities=32% Similarity=0.549 Sum_probs=194.9
Q ss_pred cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc
Q 006496 397 HIELEDVHFAYPARPN---------------------VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG 455 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~---------------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G 455 (643)
.|+++||+.-+..++. ..-++|+||+|+.||+..|-|=||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4888888887754321 1248999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHH----hcccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhccc
Q 006496 456 VVKIDGRDIRSHHLRSL----RRHIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYE 525 (643)
Q Consensus 456 ~I~idG~di~~~~~~~l----r~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~ 525 (643)
+|.+||.|+..++.++| |++++.|+|..-||+- ||.||..||.. ...+ +++..++++.++|++|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999999887 4569999999999975 99999999952 1122 3457789999999999888873
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhc
Q 006496 526 GYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNC 602 (643)
Q Consensus 526 Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~ 602 (643)
.||||++||+.|||||..+|+||++|||+|||||--...+|+.+.++-+ +||+|+|||.|+. ++-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 6999999999999999999999999999999999988888888866533 6999999999987 6779
Q ss_pred CEEEEEeCCEEEEEcChhHHhhcCCCcHHHH
Q 006496 603 DIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 603 D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
|||..|++|+|+..|||+|++.+ |..-|-+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~-PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLN-PANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcC-ccHHHHH
Confidence 99999999999999999999986 4444443
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.6e-42 Score=350.48 Aligned_cols=221 Identities=24% Similarity=0.344 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEECCeeCCCCCHHHHh-c
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGRDIRSHHLRSLR-R 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~--~~~~G~I~idG~di~~~~~~~lr-~ 474 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|++ +|++|+|.+||.++...++...+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 35899999999999999999999999999999999994 69999999999999888876655 5
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhcc----HHHHH--hcccccccccCCCCCCCChhHHHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANA----HDFIA--GLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l----~~~I~--~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
.++|++|++.+++. |..+|+.+... ........+.++..++ .+.++ .+|+++.+... ...||||||||++
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~ 155 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALN-AVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRND 155 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhh-hhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHH
Confidence 79999999988765 54554432100 0000000000111111 12222 24444433321 1369999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh--cCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN--CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~--~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++...+
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 235 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 235 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999987654 6899999999999887 89999999999999999986543
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=335.58 Aligned_cols=182 Identities=26% Similarity=0.443 Sum_probs=161.6
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEECCeeCCCCCHHHHh
Q 006496 397 HIELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~--~~~~G~I~idG~di~~~~~~~lr 473 (643)
.|+++|++|+|++.. +.++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246899999999999999999999999999999999986 489999999999886 5678
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
++++|++|++.+|.+ |++||+.++. .++ +||||||||++||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~-----------~~~------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA-----------LLR------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH-----------HHh------------------------cCCHHHhHHHHHHHHH
Confidence 899999999998885 9999997641 000 7999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcch--hhhcCEEEEEeC-CEEEEEc
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLST--IQNCDIIAVLEQ-GRVVEEG 617 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~--i~~~D~I~vl~~-G~Ive~G 617 (643)
+++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999988653 6899999999984 467999999999 9999876
No 256
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-42 Score=340.70 Aligned_cols=195 Identities=29% Similarity=0.429 Sum_probs=165.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH----HHHhcc
Q 006496 400 LEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL----RSLRRH 475 (643)
Q Consensus 400 ~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~----~~lr~~ 475 (643)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999964 358999999999999999999999999999999999999999999999999765542 246788
Q ss_pred cEEEecCCCCCc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 476 IALVSQEPALFA-GTIRENITYGAS-----DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 476 i~~v~Q~p~lf~-gTireNi~~g~~-----~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
++|++|++.+|+ .|++||+.++.. ....++++.++++..++.++.+. ...+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHH
Confidence 999999999997 699999987421 01123456677777776554332 2357999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEE
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVL 608 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl 608 (643)
||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999999988754 68999999999988899999875
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-42 Score=335.09 Aligned_cols=183 Identities=34% Similarity=0.506 Sum_probs=162.5
Q ss_pred cEEEEeEEEECCCC---CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEECCeeCCCCCHHH
Q 006496 397 HIELEDVHFAYPAR---PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~--~~~~G~I~idG~di~~~~~~~ 471 (643)
.|+++||+|+|+.. ...++|+|+||+|++||+++|+|++|||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 0246999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 472 LRRHIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 472 lr~~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|++++|++|++.+|.+ |++||+.++. .+. .||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------~~~----------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-------KLR----------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-------Hhc----------------------------cCCHHHHHHHHHHH
Confidence 78899999999999875 9999996541 000 69999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcc-hh-hhcCEEEEEeCCEEEEEc
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLS-TI-QNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~-~i-~~~D~I~vl~~G~Ive~G 617 (643)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++ .+ ..||++++|++|++++.|
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999988753 789999999997 44 459999999999998765
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.6e-42 Score=331.77 Aligned_cols=171 Identities=24% Similarity=0.472 Sum_probs=156.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~i 476 (643)
|+++|++++| +|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+. ..+|+++
T Consensus 5 l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 5 LEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 8999999998 6999999999999999999999999999999999999999999999999998874 4578899
Q ss_pred EEEecCC---CCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 477 ALVSQEP---ALF-AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 477 ~~v~Q~p---~lf-~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
+|++|++ .++ +.|++||+.++. . ||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~-~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSS-L-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHh-h-------------------------------------cCHHHHHHHHHHHHH
Confidence 9999995 344 579999997651 0 999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
+++|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998874 36899999999998876 999999999975
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4e-42 Score=324.97 Aligned_cols=164 Identities=34% Similarity=0.490 Sum_probs=151.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. .++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999643 35899999999999999999999999999999999999999999999983 5799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|++|++.++++|++||+.++ ....||||||||++||||++++|+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred EECCCCccccccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999653 235799999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
++||||||++||+++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999999886 589999999999888999999999863
No 260
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-42 Score=323.27 Aligned_cols=218 Identities=30% Similarity=0.438 Sum_probs=188.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~i 476 (643)
++++|++..|.. ..+|++|||++++||+++++||+|+|||||+++|+|+.+|.+|+|.++|.|+...+++. .|..|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999964 46999999999999999999999999999999999999999999999999999999876 57779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
+||||.-.+|+. ||.|||.+|... ..+++-+ ...+++..+-+|. +......++.+|||||+|-+||||||..+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~-~~~~~~~----~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYA-RRDKEAQ----ERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhc-ccccccc----cccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999976 999999998421 1211111 1113344555563 56666778889999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|++|+|||||.+|=|.--+.|.+.|+++.+ +.||++|-++.... +-+||.+||++|+|+.+|+.+||.+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999998875 45999999998875 5799999999999999999999997
No 261
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-39 Score=339.42 Aligned_cols=462 Identities=15% Similarity=0.150 Sum_probs=282.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 132 TNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAIC---SRLAKDANVVRSLVGDRVALLVQTFSSITI 208 (643)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~---~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~ 208 (643)
+..+..|.......+.+.++.+-++++.++-. .||.- .+..++|. +|+++|++..-..+......++.+.+.++.
T Consensus 138 ~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~-~yYki-s~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 138 LNALLKFTTNELYLRFRKNLTKYLHRLYFKGF-TYYKL-SNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHhccc-eEEEe-cccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 33344444444555555555555555555432 23321 22222333 589999999887766555555555444433
Q ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHH
Q 006496 209 AFTMSL-IISWRLALVIIAVQPLVIVCLYGKE-VLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKA 286 (643)
Q Consensus 209 ~~~~~~-~~~~~l~lv~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~ 286 (643)
.....+ ..+|..+..+++.+.+-.++...+. .+.+...++.. .-.+..-.-.+...+.+.|-.|+.++.+....+..
T Consensus 216 Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qek-lEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~ 294 (659)
T KOG0060|consen 216 YTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEK-LEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQR 294 (659)
T ss_pred hhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHH-hhcchhhheeeeeecchhhhhhccCchHHHHHHHH
Confidence 332222 2334322222222221122222222 22222222222 22222223356677889999999887766655554
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHH----HHHHHHHHHHHH
Q 006496 287 HEAPRRE---GVRQSWIAGICLAFSRALVSCVVALAFWYGGRLV----GRGYIDGKSLFEIFLI----LVSTGKVIADAG 355 (643)
Q Consensus 287 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv----~~~~~~~g~~~~~~~~----~~~~~~~~~~~~ 355 (643)
.++.... .+..+++.++... ++..++.++.+.+-+.-+ ..+.++...+...+.. +..+...+..+.
T Consensus 295 f~~Lv~~l~~l~~~r~~l~f~~n---~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~ 371 (659)
T KOG0060|consen 295 FRNLVQHLRELMSFRFWLGFIDN---IFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLV 371 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444332 2222333333222 222222222211111111 1233444444332221 112222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcC-------------CCCCC------CCC-CCCCCccccEEEEeEEEECCCCCCccc
Q 006496 356 TMTTDIAKGSDAVASVFAVLDRHTK-------------IDPDD------LNG-YQPEKIIGHIELEDVHFAYPARPNVMI 415 (643)
Q Consensus 356 ~~~~~~~~~~~a~~ri~~~~~~~~~-------------~~~~~------~~~-~~~~~~~~~I~~~nvsf~Y~~~~~~~v 415 (643)
.....+....+-..|+-++.+.-.+ +..+. .++ .........|+|++|++.-|++ ...+
T Consensus 372 ~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~l 450 (659)
T KOG0060|consen 372 DLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLL 450 (659)
T ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Ccee
Confidence 3334444444444555444321100 00000 000 0011123569999999999975 3456
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHh
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENIT 495 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~ 495 (643)
.+|+||+|+.|+.+-|+||||||||+|++.|.|+++..+|++.--...-. +.+-|+||.|+.=.||+||-+.
T Consensus 451 ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvI 522 (659)
T KOG0060|consen 451 IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVI 522 (659)
T ss_pred eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhheee
Confidence 78899999999999999999999999999999999999999986332111 3389999999999999999998
Q ss_pred cCC------CCCCCHHHHHHHHHHhccHHHHHhcccccccccC-CCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCC
Q 006496 496 YGA------SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCG-DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL 568 (643)
Q Consensus 496 ~g~------~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vg-e~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaL 568 (643)
|-. ...++|++|.+.|+.++|...++.. +|+|+++. +-..-||+||+||+|.||-+|.+|++-||||+||||
T Consensus 523 YP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv 601 (659)
T KOG0060|consen 523 YPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAV 601 (659)
T ss_pred ccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhc
Confidence 741 2347899999999999999887776 78997764 667889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCC
Q 006496 569 DSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQG 611 (643)
Q Consensus 569 D~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G 611 (643)
|.+.|..+.+.+++. +-|.|.|.||.+.-+.-|.++-|+.+
T Consensus 602 ~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 602 TEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred cHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 999999999998885 89999999999999999999999863
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.7e-42 Score=333.86 Aligned_cols=186 Identities=29% Similarity=0.454 Sum_probs=164.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEECCeeCCCCCHHHH-hc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGRDIRSHHLRSL-RR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl--~~~~~G~I~idG~di~~~~~~~l-r~ 474 (643)
++++|++++|++ .++|+|+||++++||+++|+|++|||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 3589999999999999999999999999999999999 58999999999999999887654 56
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 475 HIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+++|+||+|.+|++ |+++|+ ... ..+||||||||++||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~-----------~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYV-----------NEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhc-----------cccCCHHHHHHHHHHHHHh
Confidence 69999999999986 455544 001 1369999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh--hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ--NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~--~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++|+|+||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+..
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~~ 193 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELAL 193 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHHh
Confidence 99999999999999999999999999988754 689999999999988 69999999999999999 555653
No 263
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.7e-42 Score=342.75 Aligned_cols=208 Identities=30% Similarity=0.406 Sum_probs=171.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC----CCcEEEECCeeCCCCCHHHHhcccEEEecCCC-CCc--
Q 006496 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA-LFA-- 487 (643)
Q Consensus 415 vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~----~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~-lf~-- 487 (643)
+|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||.++... +..+++++|++|+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999998754 233468999999995 343
Q ss_pred ccHHHHHhcCC----C-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 006496 488 GTIRENITYGA----S-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562 (643)
Q Consensus 488 gTireNi~~g~----~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLD 562 (643)
-|+.+|+.+.. . ....++++.++++.+++.+. ++........||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 48999885421 0 00113446677777766421 12334455689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHH
Q 006496 563 EATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 563 E~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
|||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++... +.+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN-PKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-cCCHHHH
Confidence 99999999999999999998754 689999999999986 5999999999999999999999864 4455554
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=308.72 Aligned_cols=193 Identities=27% Similarity=0.469 Sum_probs=172.0
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHH
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIR 491 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTir 491 (643)
+.++|+|+||++.+||.++|+||||||||||++.++-+..|++|.+.+.|.|++.++++.+|++++|+.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCC
Q 006496 492 ENITYGA---SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL 568 (643)
Q Consensus 492 eNi~~g~---~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaL 568 (643)
||+-|-- +...+.....+-++.+++.+. .+..+-.+||||+|||+||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~----------~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDS----------ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchh----------hhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998741 333455555666666665544 344556789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhcCEEEEEeCCEEE
Q 006496 569 DSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNCDIIAVLEQGRVV 614 (643)
Q Consensus 569 D~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~D~I~vl~~G~Iv 614 (643)
|+.+.+.|.+.|.++.. +..++.|||.... ++.||+++.+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999988873 5789999999987 8999999999999873
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=385.77 Aligned_cols=228 Identities=26% Similarity=0.389 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC
Q 006496 397 HIELEDVHFAYPARP--------NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH 468 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~--------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~ 468 (643)
-++++|++++|+.+. ...+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 236899999999999999999999999999999999999999999999999998876
Q ss_pred HH---HHhcccEEEecCCC--CCc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhccH-HHHHhcccccccccCCCC
Q 006496 469 LR---SLRRHIALVSQEPA--LFA-GTIRENITYGA--SDKID----ESEIIEAGKAANAH-DFIAGLYEGYDTWCGDRG 535 (643)
Q Consensus 469 ~~---~lr~~i~~v~Q~p~--lf~-gTireNi~~g~--~~~~~----~e~i~~al~~~~l~-~~I~~lp~Gldt~vge~G 535 (643)
.. .+|++|+||+|+|. +++ -|+.||+.++. ....+ .+++.++++.+++. +..+..|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 46788999999984 665 49999997531 01111 24566777777774 3333332
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCE
Q 006496 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGR 612 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~ 612 (643)
..||||||||++|||||+.+|++||||||||+||..+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 46999999999999999999999999999999999999999999988754 6899999999999865 99999999999
Q ss_pred EEEEcChhHHhhcCCCcHHHH-HHH
Q 006496 613 VVEEGSHQSLLAKGPAGAYYS-LVS 636 (643)
Q Consensus 613 Ive~G~~~eLl~~~~~g~y~~-l~~ 636 (643)
|++.|+++++..+ +...|.+ |+.
T Consensus 542 iv~~g~~~~i~~~-p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFEN-PQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcC-CCCHHHHHHHh
Confidence 9999999999864 4455654 443
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.5e-42 Score=328.37 Aligned_cols=177 Identities=34% Similarity=0.540 Sum_probs=160.7
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999964 358999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 006496 479 VSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAV 558 (643)
Q Consensus 479 v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~I 558 (643)
++| +++.+++.+++.. ....||||||||++||||++++|++
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999 6677777665543 3457999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchh-hhcCEEEEEeCCEEEEEc
Q 006496 559 LLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 559 liLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G 617 (643)
+||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999988765 68999999999997 569999999999998764
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2e-41 Score=341.71 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=178.9
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|+++. .+|+|+||+|++||+++|+|++|||||||+++|+|++++ +|+|.+||.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 169999999999999999999999999999999999965 9999999999999888888889999
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 479 VSQEPA-LFAGTIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 479 v~Q~p~-lf~gTireNi~~g~~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+||++. ++..|+++|+.++.....+ .+++.++++..++.+.. ......||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999985 4567999999986321112 23455566665554332 3344579999999999999999
Q ss_pred c-------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 554 K-------NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 554 ~-------~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
. +|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 468999999999976 5699999999999999999999875
Q ss_pred cCCCcHHHHHHH
Q 006496 625 KGPAGAYYSLVS 636 (643)
Q Consensus 625 ~~~~g~y~~l~~ 636 (643)
.....+.+.
T Consensus 223 ---~~~~~~~~~ 231 (248)
T PRK03695 223 ---PENLAQVFG 231 (248)
T ss_pred ---chHHHHHhC
Confidence 223445543
No 268
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.1e-41 Score=339.90 Aligned_cols=192 Identities=32% Similarity=0.426 Sum_probs=163.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc-ccHHHHH
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA-GTIRENI 494 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~-gTireNi 494 (643)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765432 489999999998 5999999
Q ss_pred hcCC---CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCC
Q 006496 495 TYGA---SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSA 567 (643)
Q Consensus 495 ~~g~---~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSa 567 (643)
.++. .+..+++ ++.++++..++.+..+. ....||||||||++||||++++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8741 0123322 35566666666544332 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 568 LDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 568 LD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
||+.+.+.+.+.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999988653 689999999999875 49999999999999999887764
No 269
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=362.56 Aligned_cols=229 Identities=30% Similarity=0.458 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCee--CCC
Q 006496 397 HIELEDVHFAYPAR--------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRD--IRS 466 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~d--i~~ 466 (643)
-++++|++.+|... ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 13468999999999999999999999999999999999999999999999987 333
Q ss_pred CCHHHHhcccEEEecCCCCC---cccHHHHHhcCC--CCCC----CHHHHHHHHHHhccHH-HHHhcccccccccCCCCC
Q 006496 467 HHLRSLRRHIALVSQEPALF---AGTIRENITYGA--SDKI----DESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGL 536 (643)
Q Consensus 467 ~~~~~lr~~i~~v~Q~p~lf---~gTireNi~~g~--~~~~----~~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~ 536 (643)
-....+|+++-+|+|||+-. ..||+++|.--. .... ..+++.+.++.++|.+ +..+-| .
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~ 428 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------H 428 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------h
Confidence 33556888999999999843 259999886321 0111 1235777788888875 444444 5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
.||||||||+||||||..+|+++|+||||||||+-+.+.|.+.|.++.+ +.|.|+|||++..++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 7999999999999999999999999999999999999999999987755 4899999999999976 999999999999
Q ss_pred EEEcChhHHhhcCCCcHHHHHHHh
Q 006496 614 VEEGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 614 ve~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
||.|+.+++.++ +...|.+....
T Consensus 509 VE~G~~~~v~~~-p~h~Ytr~L~~ 531 (539)
T COG1123 509 VEEGPTEKVFEN-PQHPYTRKLLA 531 (539)
T ss_pred EEeCCHHHHhcC-CCChHHHHHHH
Confidence 999988888875 67778875543
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.6e-41 Score=330.09 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=169.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987653 56888999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 478 LVSQEPALF-AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 478 ~v~Q~p~lf-~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
|+||++.++ +.|++||+.+.. ...+++++.++++..++.++.. +. ..+||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFED-------RP----VAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred EeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhc-------Cc----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999887 579999998863 2346778888999998875532 22 3469999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcch-hhhcCEEEEE
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLST-IQNCDIIAVL 608 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~-i~~~D~I~vl 608 (643)
+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+... ...||+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999987643 7899999998665 5668998877
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.5e-41 Score=375.50 Aligned_cols=214 Identities=25% Similarity=0.400 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHh-cc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLR-RH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr-~~ 475 (643)
-|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 3589999999999999999999999999999999999999999999999999888877665 46
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCC-CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 476 IALVSQEPALFAG-TIRENITYGASD-KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~-~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
++|++|++.+|.. |++||+.++... ...++++.++++..++.++ ++.. ..+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSS----AGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCC----hhhCCHHHHHHHHHHHHHH
Confidence 9999999998876 999999987321 1123456666666665432 2233 3469999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999988643 689999999999885 499999999999999999988764
No 272
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-41 Score=330.28 Aligned_cols=195 Identities=23% Similarity=0.349 Sum_probs=165.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999964 358999999999999999999999999999999999999999999999999875 4467889999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 478 LVSQEPALFA-GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
|+||++.++. .|++||+.++.....+++++.++++..++.+. .+.++ .+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 9999999874 69999998863111233456666666655432 23333 369999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEE
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAV 607 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~v 607 (643)
++|||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999863 47899999999999999987553
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.3e-41 Score=315.84 Aligned_cols=159 Identities=31% Similarity=0.537 Sum_probs=147.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~i 476 (643)
|+++|++++|++. ++++|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 5799999999743 58999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 477 ALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
+|++| ||||||||++||||++++|
T Consensus 78 ~~~~q--------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 78 AMVYQ--------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEE
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVE 615 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive 615 (643)
+++||||||++||+++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 37899999999998754 99999999999975
No 274
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.7e-41 Score=337.30 Aligned_cols=193 Identities=26% Similarity=0.406 Sum_probs=159.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEe-cCCCCC-cccH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVS-QEPALF-AGTI 490 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~-Q~p~lf-~gTi 490 (643)
.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++... ...+|++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3689999999999999999999999999999999999999999999999987653 356788999997 667776 4699
Q ss_pred HHHHhcCCC-CCCCHHH----HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccC
Q 006496 491 RENITYGAS-DKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEAT 565 (643)
Q Consensus 491 reNi~~g~~-~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~T 565 (643)
+||+.+... ...++++ +.++++..++.+ ..++.+ ..||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-------LLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 1223333 333444444433 234443 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 566 SALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 566 SaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998754 6899999999998755 9999999999998765
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=375.98 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~i 476 (643)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+++
T Consensus 6 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred EEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 899999999963 35899999999999999999999999999999999999999999999999998887665 45679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----C---CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD-----K---IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~-----~---~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
+||+|++.+|.. |++||+.++... . .+. +++.++++..++.+ -.+.. ..+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~----~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEK----VANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccc----hhhCCHHHH
Confidence 999999998875 999999875310 0 011 23444455444432 12333 347999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 621 (643)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 999999999999999999999999999999999999988643 6899999999999864 99999999999999999988
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-41 Score=371.89 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEECCeeCCCCCHHH-Hh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGRDIRSHHLRS-LR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~--~~G~I~idG~di~~~~~~~-lr 473 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 3589999999999999999999999999999999999996 8999999999998877654 46
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCCC----CCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGASD----KIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~~----~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
++++||||+|.+|+. |++||+.++... ..+. +++.++++..++ +........+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHHH
Confidence 789999999998875 999999886311 1122 234444444433 22223334579999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++||||++.+|+|||||||||+||+++...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998864 46899999999999865 999999999999999998877
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
..
T Consensus 231 ~~ 232 (506)
T PRK13549 231 TE 232 (506)
T ss_pred CH
Confidence 53
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=312.02 Aligned_cols=213 Identities=33% Similarity=0.546 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
+++.+++.+|++ ...+++|+||+++.||.+||.|++||||||+++.|..++.|++|+|.|||.|..+- +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999975 33479999999999999999999999999999999999999999999999998874 567899999
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGA-SDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~-~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
+++-+.-|+.. |.||||.|.. -.+.+ +.++.+..+.-++.+.+ |+.+| ++|-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 99988888865 9999999752 11222 33444555555555543 44454 599999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|.+||+|+|||||||+||-.+.+.+++-|.+... +++||..||-++.++ -||+|+++.+|++|..|+.+++.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999988876 899999999999998 699999999999999999999976
No 278
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=331.75 Aligned_cols=225 Identities=29% Similarity=0.467 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-C----CCcEEEECCeeCCCCCHHH
Q 006496 398 IELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-P----LKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-~----~~G~I~idG~di~~~~~~~ 471 (643)
++++|++.+|+... ...+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 3568999999999999999999999999999999999998 3 6799999999999999886
Q ss_pred Hh----cccEEEecCCC-CCc------ccHHHHHhcCCCC---CCCHHHHHHHHHHhccHH---HHHhcccccccccCCC
Q 006496 472 LR----RHIALVSQEPA-LFA------GTIRENITYGASD---KIDESEIIEAGKAANAHD---FIAGLYEGYDTWCGDR 534 (643)
Q Consensus 472 lr----~~i~~v~Q~p~-lf~------gTireNi~~g~~~---~~~~e~i~~al~~~~l~~---~I~~lp~Gldt~vge~ 534 (643)
+| +.|++|+|||. =|| .-+.|-+...... .-..++..+.|+.+++.+ .++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 36999999986 233 1244444432110 001346778888888875 333444
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCC
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQG 611 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G 611 (643)
..||||||||+.||-|+..+|++||-||||+|||..+.++|.+.|+++.+ +.|+|+|||++..+. -||||+||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 57999999999999999999999999999999999999999999988764 789999999999875 59999999999
Q ss_pred EEEEEcChhHHhhcCCCcHHHHH
Q 006496 612 RVVEEGSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 612 ~Ive~G~~~eLl~~~~~g~y~~l 634 (643)
+|||.|+.+++..+ +.-.|.+.
T Consensus 231 ~iVE~g~~~~i~~~-P~HPYT~~ 252 (316)
T COG0444 231 RIVEEGPVEEIFKN-PKHPYTRG 252 (316)
T ss_pred EEEEeCCHHHHhcC-CCChHHHH
Confidence 99999999999986 55556653
No 279
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.9e-41 Score=327.62 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=169.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999964 35899999999999999999999999999999999999999999999999987654 46778899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 478 LVSQEPALFA-GTIRENITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
|++|++.+++ .|++||+.++.. ...+++++.++++..++.++.+. . ...||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-------P----VRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-------C----hhhcCHHHHHHHHHHHHHhc
Confidence 9999999887 599999987521 11345678888999888765433 2 34699999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEE
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVL 608 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl 608 (643)
+|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 36899999999999955 4666665
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=372.68 Aligned_cols=213 Identities=28% Similarity=0.393 Sum_probs=178.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~i 476 (643)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+++
T Consensus 5 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 899999999963 35899999999999999999999999999999999999999999999999997766544 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----CCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD-----KIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~-----~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRi 546 (643)
+||+|++.+|.. |++||+.++... ..+. +++.++++..++.+. .+.. ..+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKL----VGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCc----hhhCCHHHHHHH
Confidence 999999998875 999999886311 1122 233444444444221 2333 347999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998764 3679999999999885 599999999999999999887643
No 281
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.5e-41 Score=373.45 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC
Q 006496 397 HIELEDVHFAYPAR--------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH 468 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~ 468 (643)
-|+++|++++|+.. .+..+|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 38999999999621 1246899999999999999999999999999999999999 48999999999998776
Q ss_pred HHH---HhcccEEEecCC--CCCc-ccHHHHHhcCCC---CCCC----HHHHHHHHHHhccH-HHHHhcccccccccCCC
Q 006496 469 LRS---LRRHIALVSQEP--ALFA-GTIRENITYGAS---DKID----ESEIIEAGKAANAH-DFIAGLYEGYDTWCGDR 534 (643)
Q Consensus 469 ~~~---lr~~i~~v~Q~p--~lf~-gTireNi~~g~~---~~~~----~e~i~~al~~~~l~-~~I~~lp~Gldt~vge~ 534 (643)
... +|++++||||+| .+|+ .|++||+.++.. ...+ ++++.++++..++. +.. ...
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR-----------HRY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH-----------hcC
Confidence 543 578899999998 3665 599999987420 0011 23455566666553 222 223
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 357999999999999999999999999999999999999999999988753 6899999999998864 9999999999
Q ss_pred EEEEEcChhHHhhc
Q 006496 612 RVVEEGSHQSLLAK 625 (643)
Q Consensus 612 ~Ive~G~~~eLl~~ 625 (643)
+|++.|++++++++
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999864
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-40 Score=369.01 Aligned_cols=210 Identities=22% Similarity=0.268 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 8999999999643 4899999999999999999999999999999999999999999999999888777777888899
Q ss_pred EEecCCCC---------CcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 478 LVSQEPAL---------FAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 478 ~v~Q~p~l---------f~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
|++|++.+ +.-|+++|+.++. ..++++.++++..++.+..... ...||||||||++|
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 146 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLL 146 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHH
Confidence 99998753 2458999986541 2356778888888776544332 24699999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999988644 5899999999998865 99999999999999999998875
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=377.28 Aligned_cols=221 Identities=26% Similarity=0.375 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC----------
Q 006496 397 HIELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR---------- 465 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~---------- 465 (643)
-|+++|++++|+... ..++|+||||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 499999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cccEEEecCC--CCCc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhccHHHHHhcccccccccC
Q 006496 466 SHHLR---SLR-RHIALVSQEP--ALFA-GTIRENITYGAS--DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCG 532 (643)
Q Consensus 466 ~~~~~---~lr-~~i~~v~Q~p--~lf~-gTireNi~~g~~--~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vg 532 (643)
+.+.. .+| ++|+||+|+| .+++ -|++|||.++.. ...+. +++.++++.+++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 5799999999 5776 499999987521 01222 345566666665321 11122
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEe
Q 006496 533 DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLE 609 (643)
Q Consensus 533 e~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~ 609 (643)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. -||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 33457999999999999999999999999999999999999999999988753 689999999999875 599999999
Q ss_pred CCEEEEEcChhHHhhc
Q 006496 610 QGRVVEEGSHQSLLAK 625 (643)
Q Consensus 610 ~G~Ive~G~~~eLl~~ 625 (643)
+|+|++.|++++++..
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999999763
No 284
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=368.55 Aligned_cols=208 Identities=28% Similarity=0.418 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~i 476 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+++
T Consensus 5 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 5 LSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred EEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 899999999964 358999999999999999999999999999999999999999999999999976554 4578899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC---C-CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD---K-IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~---~-~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
+||||++.+|+. |++||+.++... . .+. +++.++++.+++. ........+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHHH
Confidence 999999999886 999999986311 1 122 2344455554432 2222334579999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcCh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~ 619 (643)
||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 36899999999998855 999999999999987653
No 285
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.5e-40 Score=368.54 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCCCHHH
Q 006496 398 IELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~~~~~ 471 (643)
|+++|++++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..+
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 85 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85 (529)
T ss_pred EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHH
Confidence 8999999999632 124689999999999999999999999999999999999987 7999999999998877543
Q ss_pred ---Hh-cccEEEecCCC--CCc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 472 ---LR-RHIALVSQEPA--LFA-GTIRENITYGA--SDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 472 ---lr-~~i~~v~Q~p~--lf~-gTireNi~~g~--~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+| ++++||+|+|. +++ -|+++|+.+.. ....+ .+++.++++.+++.+.... .+. ...+|
T Consensus 86 ~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~----~~~~L 157 (529)
T PRK15134 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTD----YPHQL 157 (529)
T ss_pred HHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hhh----CCccc
Confidence 34 57999999985 444 48999986321 00112 3456677777776532111 122 23579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEE
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVE 615 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive 615 (643)
|||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988643 689999999999886 499999999999999
Q ss_pred EcChhHHhhc
Q 006496 616 EGSHQSLLAK 625 (643)
Q Consensus 616 ~G~~~eLl~~ 625 (643)
.|++++++..
T Consensus 238 ~g~~~~~~~~ 247 (529)
T PRK15134 238 QNRAATLFSA 247 (529)
T ss_pred eCCHHHHhhC
Confidence 9999999763
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-40 Score=324.63 Aligned_cols=195 Identities=27% Similarity=0.357 Sum_probs=168.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|+++.|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. . .+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999964 358999999999999999999999999999999999999999999999998753 2 2888999
Q ss_pred EEecCCCCC-cccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 478 LVSQEPALF-AGTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 478 ~v~Q~p~lf-~gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
|++|++.++ +.|++||+.+... ....++++.++++..++.++... | + ..||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~------~----~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-P------F----GYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-C------h----hhcCHHHHHHHHHHHHHhcC
Confidence 999988876 5799999976421 12345678889999888764322 2 2 36999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeC
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++..+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 46899999999999988 99988854
No 287
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-40 Score=326.10 Aligned_cols=197 Identities=22% Similarity=0.318 Sum_probs=166.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ .++++++||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999964 3589999999999999999999999999999999999999999999999998752 346679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFAG-TIRENITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|++|++.+|++ |++||+.++.. ....++.+.++++..++.+. +++.+ ..||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHh
Confidence 999999999987 99999976421 11123445566666655332 34433 469999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeC
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQ 610 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~ 610 (643)
++|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 4689999999999885 5899999874
No 288
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-40 Score=322.36 Aligned_cols=194 Identities=23% Similarity=0.308 Sum_probs=164.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ ..+|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999964 35899999999999999999999999999999999999999999999999988765 46788899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC
Q 006496 478 LVSQEPALFA-GTIRENITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN 555 (643)
Q Consensus 478 ~v~Q~p~lf~-gTireNi~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~ 555 (643)
|++|++.+|+ .|++||+.+... ....++++.++++..++.++.+. .+ .+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-------PA----AQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-------Ch----hhcCHHHHHHHHHHHHHhcC
Confidence 9999999987 699999986521 11124468888888888776533 22 46999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHH-cCCceEEEEccCcchhhhcCEEEE
Q 006496 556 PAVLLLDEATSALDSQSEKVVQEALERL-MVERTSVVVAHRLSTIQNCDIIAV 607 (643)
Q Consensus 556 ~~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~ItHrl~~i~~~D~I~v 607 (643)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+...+ .||+++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999886 3468999999998554 3466554
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=367.34 Aligned_cols=214 Identities=23% Similarity=0.372 Sum_probs=176.4
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcccEE
Q 006496 400 LEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRHIAL 478 (643)
Q Consensus 400 ~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~i~~ 478 (643)
++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 358999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EecCCCCCc-ccHHHHHhcCCCC--C--CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 479 VSQEPALFA-GTIRENITYGASD--K--IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 479 v~Q~p~lf~-gTireNi~~g~~~--~--~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
|||++.+|. .|++||+.++... . .+.++.++. +.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998876 4999999876311 1 122222211 22233333 3443344455689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 4689999999999886 59999999999999999988764
No 290
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-40 Score=329.02 Aligned_cols=224 Identities=32% Similarity=0.527 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC
Q 006496 397 HIELEDVHFAYPARP--------NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH 468 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~--------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~ 468 (643)
-++.+||...||-+. ...+.+++||+.++||.+||||+||||||||-.+|+|+.++. |+|.++|.|+..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 489999999997421 235789999999999999999999999999999999999886 99999999999999
Q ss_pred HHH---HhcccEEEecCCC-CCc--ccHHHHHhcCC---CCCCC----HHHHHHHHHHhccHHHHH-hcccccccccCCC
Q 006496 469 LRS---LRRHIALVSQEPA-LFA--GTIRENITYGA---SDKID----ESEIIEAGKAANAHDFIA-GLYEGYDTWCGDR 534 (643)
Q Consensus 469 ~~~---lr~~i~~v~Q~p~-lf~--gTireNi~~g~---~~~~~----~e~i~~al~~~~l~~~I~-~lp~Gldt~vge~ 534 (643)
.++ +|+++-+|+|||+ =++ .||-+=|.=|. .+..+ ++++.+|++.++|+.-.. ..|
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------- 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------- 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC----------
Confidence 876 6899999999998 222 36655554331 12233 467889999999986544 333
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
..+|||||||||||||+.-+|++++|||||||||.....+|.+.++.+-+ +-+-++|+|+|..++. ||+|+||.+|
T Consensus 425 -hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 425 -HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred -cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 46999999999999999999999999999999999999999999887643 5689999999999976 9999999999
Q ss_pred EEEEEcChhHHhhcCCCcHHHH
Q 006496 612 RVVEEGSHQSLLAKGPAGAYYS 633 (643)
Q Consensus 612 ~Ive~G~~~eLl~~~~~g~y~~ 633 (643)
+|||+|+-+++.++ +...|.+
T Consensus 504 kiVE~G~~~~if~~-P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFAN-PQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcC-CCcHHHH
Confidence 99999999999986 6667765
No 291
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.1e-40 Score=328.55 Aligned_cols=201 Identities=25% Similarity=0.334 Sum_probs=163.1
Q ss_pred EEEEeEEEECCCC----CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC--C--eeCCCCCH
Q 006496 398 IELEDVHFAYPAR----PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID--G--RDIRSHHL 469 (643)
Q Consensus 398 I~~~nvsf~Y~~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id--G--~di~~~~~ 469 (643)
|+++|++++|+.. ...++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| | .++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 12368999999999999999999999999999999999999999999998 4 26766665
Q ss_pred HH---H-hcccEEEecCCCCCcc-cHHHHHhcCC-CCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 470 RS---L-RRHIALVSQEPALFAG-TIRENITYGA-SDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 470 ~~---l-r~~i~~v~Q~p~lf~g-TireNi~~g~-~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
.. + +++++|+||+|.+|+. |++||+.+.. ....+ ++++.++++..++.+... .....+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 4679999999998875 9999997531 01122 234455555555543221 12355799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVL 608 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl 608 (643)
||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999999999988643 689999999999885 69999876
No 292
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5e-40 Score=371.72 Aligned_cols=201 Identities=27% Similarity=0.383 Sum_probs=171.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC--CcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc-cc
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL--KGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA-GT 489 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~--~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~-gT 489 (643)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|. +|+|.+||.++. ...+++++||+|++.+|+ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 245678999999999996 49
Q ss_pred HHHHHhcCC----CCCCCHHH----HHHHHHHhccHHHHHhcccccccccCCC-CCCCChhHHHHHHHHHHHccCCCEEE
Q 006496 490 IRENITYGA----SDKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDR-GLQLSGGQKQRIAIARAVLKNPAVLL 560 (643)
Q Consensus 490 ireNi~~g~----~~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~-G~~LSgGQrQRiaLARAll~~~~Ili 560 (643)
++||+.++. +...++++ +.++++..+ |++..||.||+. ...||||||||++|||||+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999998752 11234433 233333333 344568989864 66899999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcch--hhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 561 LDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLST--IQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 561 LDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~--i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999998875 47999999999984 46799999999999999999999874
No 293
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-40 Score=377.27 Aligned_cols=219 Identities=26% Similarity=0.346 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEECCeeCCCC
Q 006496 397 HIELEDVHFAYPAR------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGRDIRSH 467 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~---~G~I~idG~di~~~ 467 (643)
+++|.++. +++.. .++++|+|+|++++|||.+||+||||||||||+++|.|..+|. +|+|.+||.+++
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666665 54322 1457999999999999999999999999999999999999884 799999999875
Q ss_pred CHHHHhcccEEEecCCCCCc-ccHHHHHhcCCC----CCCCHHHHHHHHHHhccHHHHHh--cccccccccCCC--CCCC
Q 006496 468 HLRSLRRHIALVSQEPALFA-GTIRENITYGAS----DKIDESEIIEAGKAANAHDFIAG--LYEGYDTWCGDR--GLQL 538 (643)
Q Consensus 468 ~~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~----~~~~~e~i~~al~~~~l~~~I~~--lp~Gldt~vge~--G~~L 538 (643)
...+|+.++||||++++|+ .||+|||.|+.. ...+.++. ...+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678999999999999996 599999987631 12233321 1223344443 445679999985 4789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcc--hhhhcCEEEEEeCCEEEE
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLS--TIQNCDIIAVLEQGRVVE 615 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~--~i~~~D~I~vl~~G~Ive 615 (643)
|||||||++|||||+.+|+|++||||||+||+.+...+.+.+++..+ ++|+|+++|+++ ....||+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999988754 799999999996 357899999999999999
Q ss_pred EcChhHHhh
Q 006496 616 EGSHQSLLA 624 (643)
Q Consensus 616 ~G~~~eLl~ 624 (643)
+|+++++.+
T Consensus 248 ~G~~~~~~~ 256 (617)
T TIGR00955 248 LGSPDQAVP 256 (617)
T ss_pred ECCHHHHHH
Confidence 999998854
No 294
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7e-40 Score=372.41 Aligned_cols=216 Identities=31% Similarity=0.457 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH---
Q 006496 397 HIELEDVHFAYPARP-NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL--- 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l--- 472 (643)
-++++|++++|++.. ..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999997421 2468999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 473 -RRHIALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 473 -r~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
|+.++|++|++.+|++ |+.||+.++.. ...+ +++..+.++.+++.+. +.....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCHHHHHH
Confidence 5789999999999975 99999986421 0111 2234455555555444 334445899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHh
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 478999999999999999999999999999999999886
No 295
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-40 Score=349.92 Aligned_cols=213 Identities=26% Similarity=0.322 Sum_probs=174.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.++++|++|+|++....++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48999999999765345699999999999999999999999999999999999999999999999751
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFA-GTIRENITYGAS-DKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~-gTireNi~~g~~-~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
++++.+.+++ .|++||+.+... ...++++ +.++++.+++.+++... ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence 2334444444 499999986421 1233333 44567777776654432 3579999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGPA 628 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~~ 628 (643)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.. .-
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~--~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD--HY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh--hH
Confidence 9999999999999999999999999999998764 36899999999999865 99999999999999999999987 33
Q ss_pred cHHHHHH
Q 006496 629 GAYYSLV 635 (643)
Q Consensus 629 g~y~~l~ 635 (643)
..|.+++
T Consensus 235 ~~~~~~~ 241 (549)
T PRK13545 235 DEFLKKY 241 (549)
T ss_pred HHHHHHH
Confidence 4455544
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.2e-40 Score=327.63 Aligned_cols=195 Identities=28% Similarity=0.460 Sum_probs=164.1
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCC---CcccHHHHHhcC
Q 006496 421 INIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPAL---FAGTIRENITYG 497 (643)
Q Consensus 421 l~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~l---f~gTireNi~~g 497 (643)
|+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++. ..|++++|+||+|.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999999764 357789999999976 457999999875
Q ss_pred CC--------C-CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCC
Q 006496 498 AS--------D-KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSAL 568 (643)
Q Consensus 498 ~~--------~-~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaL 568 (643)
.. + ..+++++.++++.+++.++.+. . ...||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-------P----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-------C----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 1123457778888877655432 2 2359999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHH
Q 006496 569 DSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 569 D~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~ 635 (643)
|+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+ +..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~---~~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD---PAPWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC---hHHHHHHh
Confidence 9999999999998875 4689999999999875 59999999 799999999999876 23455554
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=350.48 Aligned_cols=228 Identities=27% Similarity=0.415 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC----CcEEEECCeeCCCCCHHH
Q 006496 397 HIELEDVHFAYPARPN-VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL----KGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~----~G~I~idG~di~~~~~~~ 471 (643)
-++++|++..|..... ..+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 3899999999975422 35899999999999999999999999999999999999987 899999999999999876
Q ss_pred Hh----cccEEEecCCC-CCcc--cHHHH----HhcCCC--CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 472 LR----RHIALVSQEPA-LFAG--TIREN----ITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 472 lr----~~i~~v~Q~p~-lf~g--TireN----i~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+| +.|++|||+|+ .+|- ||.+- +..... .+...++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 56999999987 6653 44443 333211 11123456667777777554333 2234689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhh-cCEEEEEeCCEEEE
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVE 615 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive 615 (643)
|||||||+.||+||..+|++||+||||.|||+.+.++|.+.|+++. .+.++|+|||.+..+.+ ||||+||.+|++||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998876 46899999999999865 99999999999999
Q ss_pred EcChhHHhhcCCCcHHHHH
Q 006496 616 EGSHQSLLAKGPAGAYYSL 634 (643)
Q Consensus 616 ~G~~~eLl~~~~~g~y~~l 634 (643)
.|+.++++++ +.-.|.+-
T Consensus 236 ~G~~~~i~~~-p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSN-PQHPYTRG 253 (539)
T ss_pred ecCHHHHHhc-cCCcccHH
Confidence 9999999986 45556553
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.2e-40 Score=366.62 Aligned_cols=222 Identities=23% Similarity=0.404 Sum_probs=178.3
Q ss_pred cEEEEeEEEECCC--CCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC-Cee---CCCCC--
Q 006496 397 HIELEDVHFAYPA--RPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID-GRD---IRSHH-- 468 (643)
Q Consensus 397 ~I~~~nvsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id-G~d---i~~~~-- 468 (643)
-|+++|++++|++ ....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112468999999999999999999999999999999999999999999996 643 34333
Q ss_pred -HHHHhcccEEEecCCCCCcc-cHHHHHhcCCCCCC----CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 469 -LRSLRRHIALVSQEPALFAG-TIRENITYGASDKI----DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 469 -~~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~~~~----~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
...+|++++|+||++.+|+. |++||+.++..... .++++.++++.+++.+.- .+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 23567789999999998875 99999975310011 123455566666553200 0001122335699999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcCh
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~ 619 (643)
|||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 6899999999999865 999999999999999999
Q ss_pred hHHhh
Q 006496 620 QSLLA 624 (643)
Q Consensus 620 ~eLl~ 624 (643)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98875
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=330.24 Aligned_cols=213 Identities=22% Similarity=0.330 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCC-----------------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE
Q 006496 397 HIELEDVHFAYPAR-----------------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 459 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~-----------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i 459 (643)
+|+++||+..|... ...++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47777777666321 1346899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcccEEEecCCCCCc-ccHHHHHhcCC-CCCCCHHHHH----HHHHHhccHHHHHhcccccccccCC
Q 006496 460 DGRDIRSHHLRSLRRHIALVSQEPALFA-GTIRENITYGA-SDKIDESEII----EAGKAANAHDFIAGLYEGYDTWCGD 533 (643)
Q Consensus 460 dG~di~~~~~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~-~~~~~~e~i~----~al~~~~l~~~I~~lp~Gldt~vge 533 (643)
+|. +++++|++.+++ .|+++|+.++. ....+.++.. ++++..++.++ +..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcC
Confidence 995 577889888775 59999997641 1123444433 33444444333 334
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 534 RGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 534 ~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
....||||||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||++..+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456799999999999999999999999999999999999999999988764 47899999999999865 9999999999
Q ss_pred EEEEEcChhHHhhcCCCcHHHHHH
Q 006496 612 RVVEEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 612 ~Ive~G~~~eLl~~~~~g~y~~l~ 635 (643)
+|++.|+++++++ +-+.|.+.+
T Consensus 220 ~i~~~g~~~~~~~--~~~~~~~~~ 241 (264)
T PRK13546 220 KLKDYGELDDVLP--KYEAFLNDF 241 (264)
T ss_pred EEEEeCCHHHHHH--HhHHHHHHH
Confidence 9999999999997 344455554
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.3e-40 Score=319.41 Aligned_cols=190 Identities=20% Similarity=0.319 Sum_probs=161.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ ..++ ++||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 2344 599999999999999999999999999999999999999999999887543 35699
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC
Q 006496 478 LVSQEPAL-FAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP 556 (643)
Q Consensus 478 ~v~Q~p~l-f~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~ 556 (643)
|++|++.+ |+.|++||+.++....-.++++.++++.+++.++.. ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998765 678999999875321123567777888888765543 335679999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHH-cCCceEEEEccCcchhhhcCEEE
Q 006496 557 AVLLLDEATSALDSQSEKVVQEALERL-MVERTSVVVAHRLSTIQNCDIIA 606 (643)
Q Consensus 557 ~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~ItHrl~~i~~~D~I~ 606 (643)
+++||||||++||+.+.+.+.+.|+.. .+++|+|++||+++.++.||.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999753 45799999999999999999763
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=321.16 Aligned_cols=194 Identities=31% Similarity=0.483 Sum_probs=170.4
Q ss_pred EEEEeEEEECCCCC------CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH
Q 006496 398 IELEDVHFAYPARP------NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~ 471 (643)
++++|++..|+... ...+++||||+|++||.+||||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78999999997532 146899999999999999999999999999999999999999999999999987766
Q ss_pred HhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHH-HHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 472 LRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 472 lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
. +-..+++.+.++.+++.+ +..+.| ..||||||||++|||
T Consensus 82 -------------------------~---~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 -------------------------K---EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred -------------------------h---hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1 123567999999999876 555555 469999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGP 627 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~ 627 (643)
||.-+|++++.||||||||.-.+++|.+.+.++.+ +-|.+.|||.++.++. ||||.||..|+|||.|+-+++.++ +
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~-p 201 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN-P 201 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC-C
Confidence 99999999999999999999999999988876543 6799999999999987 999999999999999999999985 6
Q ss_pred CcHHHHH
Q 006496 628 AGAYYSL 634 (643)
Q Consensus 628 ~g~y~~l 634 (643)
.-.|.+.
T Consensus 202 ~HpYTk~ 208 (268)
T COG4608 202 LHPYTKA 208 (268)
T ss_pred CCHHHHH
Confidence 6667664
No 302
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.9e-40 Score=365.28 Aligned_cols=213 Identities=22% Similarity=0.406 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEECCeeCCCCCHHH-Hhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGRDIRSHHLRS-LRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~--~~G~I~idG~di~~~~~~~-lr~ 474 (643)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3589999999999999999999999999999999999987 7999999999998877654 467
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCCC-----CCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGASD-----KIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ 544 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~~-----~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 544 (643)
+++||||++.+|+. |++||+.++... ..+. +++.++++..++.+.. .+.++ ..|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRPV----GDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCch----hhCCHHHHH
Confidence 89999999998875 999999876310 0122 2333444444332110 12223 469999999
Q ss_pred HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHH
Q 006496 545 RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 545 RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 622 (643)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999999987643 6899999999999865 999999999999999988765
Q ss_pred h
Q 006496 623 L 623 (643)
Q Consensus 623 l 623 (643)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 4
No 303
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.2e-41 Score=306.84 Aligned_cols=222 Identities=24% Similarity=0.442 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~ 475 (643)
.+..+|+..+|..+ +|.+++||++++||.||+.||+|+||||...++.|+..|++|+|.+||.|++.++.+. -|--
T Consensus 4 ~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 47889999999643 6899999999999999999999999999999999999999999999999999999865 5777
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
|+|+||||.+|.+ |++|||..-. +..+...++.-++..+++.++.+ .+...-...|..||||||.|+-|||||..
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 9999999999987 9999998653 22222223333444444444444 34444566788999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCce-EEEEccCc-chhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMVERT-SVVVAHRL-STIQNCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~T-vI~ItHrl-~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
+|+.++||||++++||-+-..|++.|+.+..... |++.-|.. +|+.-|||.+++.+|+|..+|+|+|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999988765444 55555775 57888999999999999999999999974
No 304
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.1e-40 Score=319.05 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=148.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC--CCHHHHhcccEEEecCC--CCCcc
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS--HHLRSLRRHIALVSQEP--ALFAG 488 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~--~~~~~lr~~i~~v~Q~p--~lf~g 488 (643)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++++|++|+| .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 358999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHHHhcCCC-CCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q 006496 489 TIRENITYGAS-DKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDE 563 (643)
Q Consensus 489 TireNi~~g~~-~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE 563 (643)
|++||+.++.. ...++ +++.++++..++.++.+..| ..||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 11232 35667777777766544433 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcch
Q 006496 564 ATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLST 598 (643)
Q Consensus 564 ~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~ 598 (643)
||++||+.+.+.+.+.|++..+ ++|+|+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999988744 6899999999864
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.3e-40 Score=365.94 Aligned_cols=213 Identities=28% Similarity=0.438 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC--CCCCcEEEEC---------------
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKID--------------- 460 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~--~~~~G~I~id--------------- 460 (643)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhcccEEEecC-CCCCc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhc
Q 006496 461 --------GRDIR-------SHH---LRSLRRHIALVSQE-PALFA-GTIRENITYGAS-DKID----ESEIIEAGKAAN 515 (643)
Q Consensus 461 --------G~di~-------~~~---~~~lr~~i~~v~Q~-p~lf~-gTireNi~~g~~-~~~~----~e~i~~al~~~~ 515 (643)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. ...+ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 57776 499999987421 1122 234566677776
Q ss_pred cHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEc
Q 006496 516 AHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVA 593 (643)
Q Consensus 516 l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~It 593 (643)
+.+.... ...+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6554332 2357999999999999999999999999999999999999999999988743 68999999
Q ss_pred cCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 594 HRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 594 Hrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|+++.+. .||+|++|++|++++.|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999986 499999999999999999998875
No 306
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=315.57 Aligned_cols=214 Identities=29% Similarity=0.468 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSL-RRHI 476 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~l-r~~i 476 (643)
++.++++.+|.. ..+++|+||++++||.+||+||+||||||++|++.|+|+|++|+|.++|.||..++++.. |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999964 358999999999999999999999999999999999999999999999999999999875 5669
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-----------C--CHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDK-----------I--DES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~-----------~--~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+--+|.+-+|++ |+-||+..+.... + +++ +-.+.|+.+ |++..-.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----------gL~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----------GLGELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----------CCchhhcchhhcC
Confidence 999999999987 9999999873100 1 122 223334444 4444445556689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCcchhhh-cCEEEEEeCCEEEE
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE--RTSVVVAHRLSTIQN-CDIIAVLEQGRVVE 615 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~--~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive 615 (643)
|+||+.|+-|||||..+|++|+||||.+++.++....+.+.|++..++ .|+++|-|+++.+.+ ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 999999999999999999999999999999998888888899888753 899999999999865 99999999999999
Q ss_pred EcChhHHhhc
Q 006496 616 EGSHQSLLAK 625 (643)
Q Consensus 616 ~G~~~eLl~~ 625 (643)
+|+|+|..++
T Consensus 231 eG~P~eV~~d 240 (250)
T COG0411 231 EGTPEEVRNN 240 (250)
T ss_pred cCCHHHHhcC
Confidence 9999999874
No 307
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6e-40 Score=293.36 Aligned_cols=209 Identities=30% Similarity=0.411 Sum_probs=176.0
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH---H
Q 006496 397 HIELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS---L 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~---l 472 (643)
-|++++++..-++. .+..||++++|.|++||.+|||||||||||||+.+|.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37788887777543 2446999999999999999999999999999999999999999999999999999998764 4
Q ss_pred h-cccEEEecCCCCCc-ccHHHHHhcCC--CCC-CCH--HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 473 R-RHIALVSQEPALFA-GTIRENITYGA--SDK-IDE--SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 473 r-~~i~~v~Q~p~lf~-gTireNi~~g~--~~~-~~~--e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
| +++++|+|..+|.+ -|--||+.+-. ..+ ..+ +.-.+-|++++|.+-+...| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 56999999999886 59999987531 111 112 22455677777666555555 5899999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeCCEEEEE
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQGRVVEE 616 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~ 616 (643)
+|||||+...|+||+-||||-+||.+|.+.|-+.+..+-. +.|.|+|||++....+|||++.|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999999998866543 5799999999999999999999999999863
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-40 Score=364.85 Aligned_cols=217 Identities=21% Similarity=0.387 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC-CCCcEEEECCeeCCCCCH-HHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD-PLKGVVKIDGRDIRSHHL-RSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~-~~~G~I~idG~di~~~~~-~~lr~ 474 (643)
-|+++|++++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953112358999999999999999999999999999999999998 599999999999876553 45677
Q ss_pred ccEEEecCC---CCCc-ccHHHHHhcCCCCC------CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 HIALVSQEP---ALFA-GTIRENITYGASDK------IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 ~i~~v~Q~p---~lf~-gTireNi~~g~~~~------~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
.++|+||+| .+|+ .|+.||+.++.... .+. +++.++++.+++.+ .........|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 899999996 3665 59999998752100 121 22333444433310 112333457999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+|+..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 37899999999998865 99999999999999999
Q ss_pred hhHHh
Q 006496 619 HQSLL 623 (643)
Q Consensus 619 ~~eLl 623 (643)
++++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88874
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.2e-39 Score=323.52 Aligned_cols=194 Identities=28% Similarity=0.365 Sum_probs=156.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
+.++|++.+|++ .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 677888888853 4699999999999999999999999999999999999999999999999976421
Q ss_pred EEecCCCC-CcccHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPAL-FAGTIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~l-f~gTireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
.+...+ .+.|++||+.++.. ...+.+ ++.++++..++.+. +++.+ ..||||||||++||||
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~lara 156 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLPV----KTYSSGMKARLAFAIA 156 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCCh----hhCCHHHHHHHHHHHH
Confidence 111222 35799999987521 112222 34445555444333 34444 4699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEc
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G 617 (643)
++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988644 589999999999875 59999999999998876
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-39 Score=390.79 Aligned_cols=217 Identities=24% Similarity=0.387 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
..|+++|++++|+++ +..+++|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|.|+.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3469999999999999999999999999999999999999999999999999975 56778999
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 476 IALVSQEPALFAG-TIRENITYGAS-DKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
++|+||++.+|+. |++|||.++.. ...+ ++++.+.++.++|.+. ......+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999999975 99999987421 1122 2345666666665443 2333467999999999999
Q ss_pred HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 550 RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 550 RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
||++.+|+|+|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. -||||++|++|+++..|++++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999877899999999999986 5999999999999999999999864
No 311
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=293.13 Aligned_cols=225 Identities=30% Similarity=0.465 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC---------
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH--------- 467 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~--------- 467 (643)
.++.+|+..+|.+. .+|++|||+.++|+.|.|+|.|||||||+++|+.=+-.|..|+|.++|..|.--
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999754 489999999999999999999999999999999999999999999999876522
Q ss_pred ----CHHHHhcccEEEecCCCCCc-ccHHHHHhcCCCC--CCC-H---HHHHHHHHHhccHHHHHhcccccccccCCCCC
Q 006496 468 ----HLRSLRRHIALVSQEPALFA-GTIRENITYGASD--KID-E---SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGL 536 (643)
Q Consensus 468 ----~~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~~~--~~~-~---e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~ 536 (643)
..+.+|.+++.|+|..-|.+ .|+-||..=+|-. ..+ + |+-..-|.++++.+--+.-| .
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 13458999999999999997 5999998643210 012 2 23344566777766555444 5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEE
Q 006496 537 QLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVV 614 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv 614 (643)
.|||||+||.||||||.-+|+++++|||||||||+--..+.+.++.+. .+||.++|||.+...++ +.+++.|.+|.|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 799999999999999999999999999999999998888888888765 47999999999999987 8999999999999
Q ss_pred EEcChhHHhhcCCCcHHHHHH
Q 006496 615 EEGSHQSLLAKGPAGAYYSLV 635 (643)
Q Consensus 615 e~G~~~eLl~~~~~g~y~~l~ 635 (643)
|+|+|+++..+.+....++..
T Consensus 232 E~G~P~qvf~nP~S~RlkqFl 252 (256)
T COG4598 232 EEGPPEQVFGNPQSPRLKQFL 252 (256)
T ss_pred ccCChHHHhcCCCCHHHHHHH
Confidence 999999999864334444433
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-37 Score=377.22 Aligned_cols=215 Identities=19% Similarity=0.311 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++. ...+|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 49999999999642 3469999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCC-CCCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEPALFAG-TIRENITYGA-SDKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~-~~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
||+||++.+++. |++||+.+.. ....++ +++.++++.+++.++.++. ...||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999874 9999997631 111222 3345667777776654333 2469999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||+.+|+|++|||||++||+.+.+.+.+.|++.. +++|+|++||.++.+.. ||||++|++|+++..|++++|.+
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999998864 47899999999999865 99999999999999999999976
No 313
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-39 Score=295.80 Aligned_cols=213 Identities=31% Similarity=0.456 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+.+|+|++-.++ .+|+++||+++|||.+||+||+|||||||+++|.|.+.|.+|++.++|.++.++++.++-++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 7889999988643 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCC-----CCHHH--HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH
Q 006496 478 LVSQEPAL-FAGTIRENITYGASDK-----IDESE--IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA 549 (643)
Q Consensus 478 ~v~Q~p~l-f~gTireNi~~g~~~~-----~~~e~--i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA 549 (643)
++||+..+ |+-|++|=+.+|..+. ..+++ ..+++.++.+..+-... | ..|||||+||+.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y--------~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y--------RTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h--------hhcCchHHHHHHHH
Confidence 99999885 8899999999996322 11333 56788888776654321 1 35999999999999
Q ss_pred HHHccC------CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhH
Q 006496 550 RAVLKN------PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 550 RAll~~------~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~e 621 (643)
|.|..- +++|+|||||||||..-...+.+..+++. .+..|+.|-|+|+.. ..||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 999863 46899999999999998888888888764 468899999999975 6799999999999999999999
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
.+.
T Consensus 228 vlt 230 (259)
T COG4559 228 VLT 230 (259)
T ss_pred hcC
Confidence 986
No 314
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=358.48 Aligned_cols=210 Identities=19% Similarity=0.339 Sum_probs=171.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~ 475 (643)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 27999999999999999999999999999999999999999999999999876554 457788
Q ss_pred cEEEecCC---CCCcc-cHHHHHhcCCCC---------C-CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCC
Q 006496 476 IALVSQEP---ALFAG-TIRENITYGASD---------K-IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQ 537 (643)
Q Consensus 476 i~~v~Q~p---~lf~g-TireNi~~g~~~---------~-~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~ 537 (643)
++||||++ .+|+. |++||+.++... . .+. +++.++++..++. ++-.++++ ..
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQNI----TE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCcc----cc
Confidence 99999984 57765 999999875210 0 011 1233334433331 02233444 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEE
Q 006496 538 LSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVE 615 (643)
Q Consensus 538 LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive 615 (643)
||||||||++||||++++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 4689999999999875 599999999999999
Q ss_pred EcChhH
Q 006496 616 EGSHQS 621 (643)
Q Consensus 616 ~G~~~e 621 (643)
.++..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 987634
No 315
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.4e-39 Score=388.42 Aligned_cols=213 Identities=25% Similarity=0.366 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcEEEECCeeCCCCCHHHH
Q 006496 397 HIELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGRDIRSHHLRSL 472 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~---~~~G~I~idG~di~~~~~~~l 472 (643)
.++++|++++|+.+ ..+.+|+|||++++|||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37999999999632 13469999999999999999999999999999999999998 78899999999985 257
Q ss_pred hcccEEEecCCC-CCcccHHHHHhcCC----CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 473 RRHIALVSQEPA-LFAGTIRENITYGA----SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 473 r~~i~~v~Q~p~-lf~gTireNi~~g~----~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
|++++||+|++. ++..|+|||+.++. +...+++ ++.++++..++.+ -.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999876 45679999999752 1123333 3556666666543 468999998889999999
Q ss_pred HHHHHHHHHccCCC-EEEeeccCCCCCHHHHHHHHHHHHHH-cCCceEEEEccCcchh--hhcCEEEEEeCC-EEEEEcC
Q 006496 544 QRIAIARAVLKNPA-VLLLDEATSALDSQSEKVVQEALERL-MVERTSVVVAHRLSTI--QNCDIIAVLEQG-RVVEEGS 618 (643)
Q Consensus 544 QRiaLARAll~~~~-IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~ItHrl~~i--~~~D~I~vl~~G-~Ive~G~ 618 (643)
||++|||||+.+|+ ||+||||||+||+.+...+.+.|+++ .+++|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4579999999999973 679999999997 9999999
Q ss_pred hh
Q 006496 619 HQ 620 (643)
Q Consensus 619 ~~ 620 (643)
..
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
No 316
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=7e-39 Score=334.81 Aligned_cols=187 Identities=35% Similarity=0.553 Sum_probs=159.5
Q ss_pred EEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc-cHHHHHhcCCC-CCCC----H
Q 006496 431 LVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG-TIRENITYGAS-DKID----E 504 (643)
Q Consensus 431 IvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~-~~~~----~ 504 (643)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++|++|++.+|+. |++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999976 99999998621 1122 2
Q ss_pred HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 006496 505 SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM 584 (643)
Q Consensus 505 e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~ 584 (643)
+++.++++..++.++.++.| .+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35666777777765544433 5799999999999999999999999999999999999999999998875
Q ss_pred C--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhcCCCcHH
Q 006496 585 V--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAKGPAGAY 631 (643)
Q Consensus 585 ~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y 631 (643)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.++ +...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~-~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE-PANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCcHH
Confidence 4 689999999999875 4999999999999999999999874 34344
No 317
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=335.04 Aligned_cols=210 Identities=32% Similarity=0.472 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~ 475 (643)
-++++|++.+|+. .++|+|+||++.+||.+|++|.+|||||||+|.|.|.|+|++|+|.+||.++.-.++.+ ...-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 3899999999974 46899999999999999999999999999999999999999999999999999777765 5556
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhccHHHHHhc--ccccccccCCCCCCCChhHHHHHH
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDK-----IDESEIIEAGKAANAHDFIAGL--YEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~-----~~~e~i~~al~~~~l~~~I~~l--p~Gldt~vge~G~~LSgGQrQRia 547 (643)
|+.|.||+.|++. ||.|||-+|..+. .+..++.+.++. .++.+ +...+++|+ +||+||||.++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 9999999999976 9999999995322 233444333222 22222 122577776 59999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
||||+..+++|+|||||||+|+....+.+.+.|+++. ++.++|.|||||+.+. -||||.||.||+.+..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999987777777887775 5789999999999985 499999999999988776
No 318
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-38 Score=354.21 Aligned_cols=215 Identities=21% Similarity=0.318 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEECCeeCCCCCH-HHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGRDIRSHHL-RSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~idG~di~~~~~-~~lr~ 474 (643)
-|+++|++++|+.+....+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432123589999999999999999999999999999999999995 89999999999876543 56788
Q ss_pred ccEEEecCC---CCCc-ccHHHHHhcCCCC------CCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 HIALVSQEP---ALFA-GTIRENITYGASD------KIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 ~i~~v~Q~p---~lf~-gTireNi~~g~~~------~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
+++||||++ .+|+ .|+++|+.++... ..+. +++.++++..++.+ .-.+..+ ..|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----GRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----ccCCH
Confidence 999999996 4666 5999999875211 0111 23344444443310 0123333 46999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. ||+|++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999888764 36899999999998865 99999999999998876
Q ss_pred hhH
Q 006496 619 HQS 621 (643)
Q Consensus 619 ~~e 621 (643)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=352.94 Aligned_cols=209 Identities=20% Similarity=0.332 Sum_probs=171.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~ 475 (643)
.|+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 26999999999999999999999999999999999999999999999999987765 356788
Q ss_pred cEEEecCC---CCCc-ccHHHHHhcCCCCC-------CC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 476 IALVSQEP---ALFA-GTIRENITYGASDK-------ID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 476 i~~v~Q~p---~lf~-gTireNi~~g~~~~-------~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
++||||+| .+|. .|++||+.++.... .+ ++++.++++.+++. +.........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 99999997 3554 59999998742100 11 12233344433331 1123344457999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 3689999999999875 499999999999999999
Q ss_pred hhHHh
Q 006496 619 HQSLL 623 (643)
Q Consensus 619 ~~eLl 623 (643)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 87764
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=351.92 Aligned_cols=201 Identities=25% Similarity=0.337 Sum_probs=172.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999964 35899999999999999999999999999999999999999999999983 469
Q ss_pred EEEecCCC--CCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccH-HHHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 477 ALVSQEPA--LFA-GTIRENITYGASDKIDESEIIEAGKAANAH-DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 477 ~~v~Q~p~--lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
+|+||++. +++ .|+++|+.+......+++++.++++..++. +.. +.. ..+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------KKS----VKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------cCc----ccccCHHHHHHHHHHHHH
Confidence 99999984 443 599999975311223456677888887763 332 222 357999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEE-EEcChhHHhh
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl~ 624 (643)
+.+|+||||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999886 4699999999999865 9999999999998 8899999886
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=351.56 Aligned_cols=211 Identities=21% Similarity=0.331 Sum_probs=172.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~ 475 (643)
.++++|+++. .+++|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++..... +..|++
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 37999999999999999999999999999999999999999999999999876543 456788
Q ss_pred cEEEecCCC---CCc-ccHHHHHhcCCCCC-------CCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 476 IALVSQEPA---LFA-GTIRENITYGASDK-------IDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 476 i~~v~Q~p~---lf~-gTireNi~~g~~~~-------~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
++|+||+|. +|+ .|+.||+.++.... .+. +++.++++..++. ++-.++++ .+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLI----MNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCcc----ccCCH
Confidence 999999973 555 79999998753111 011 2233444443331 01123443 47999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
|||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ +.|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999987654 689999999999885 599999999999999999
Q ss_pred hhHHhh
Q 006496 619 HQSLLA 624 (643)
Q Consensus 619 ~~eLl~ 624 (643)
++|...
T Consensus 480 ~~~~~~ 485 (501)
T PRK11288 480 REQATE 485 (501)
T ss_pred cccCCH
Confidence 887653
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.1e-38 Score=314.76 Aligned_cols=195 Identities=26% Similarity=0.398 Sum_probs=159.1
Q ss_pred EECCCCCCccceeeeeEEEe-----CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEE
Q 006496 405 FAYPARPNVMIFKGFSINIE-----AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALV 479 (643)
Q Consensus 405 f~Y~~~~~~~vL~~isl~i~-----~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v 479 (643)
|+||+. ...++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. +++|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 678743 347889999987 68999999999999999999999999999999999995 59999
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCC-CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 480 SQEPA-LFAGTIRENITYGASDKI-DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 480 ~Q~p~-lf~gTireNi~~g~~~~~-~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
||++. .++.|++||+.+...... .++...++++..++.+.. ......||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 468899999975421111 123345566666655433 23345799999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEE--EEcChhHHhh
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVV--EEGSHQSLLA 624 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv--e~G~~~eLl~ 624 (643)
++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|+++..+ ..++|+++.+
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999999999999999999988754 6899999999999875 9999999876444 5667777553
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5e-38 Score=352.39 Aligned_cols=210 Identities=29% Similarity=0.407 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999962 23589999999999999999999999999999999999999999999986 2469
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----------------CCC--------HHHHHHHHHHhccHH-------HHHhc
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD-----------------KID--------ESEIIEAGKAANAHD-------FIAGL 523 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~-----------------~~~--------~e~i~~al~~~~l~~-------~I~~l 523 (643)
+||||+|.+|+. |++||+.++... ... .+++.++++.+++++ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875210 001 124566666666543 22222
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-c
Q 006496 524 YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-C 602 (643)
Q Consensus 524 p~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~ 602 (643)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 123445689999999999999999999999999999999999999999999875 4699999999999876 8
Q ss_pred CEEEEEeCCEEE-EEcChhHHhh
Q 006496 603 DIIAVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 603 D~I~vl~~G~Iv-e~G~~~eLl~ 624 (643)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6799988654
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6e-38 Score=351.82 Aligned_cols=210 Identities=28% Similarity=0.393 Sum_probs=167.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 3899999999962 235899999999999999999999999999999999999999999999752 469
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC---------------CCC----------HHHHHHHHHHhc-------cHHHHHhc
Q 006496 477 ALVSQEPALFAG-TIRENITYGASD---------------KID----------ESEIIEAGKAAN-------AHDFIAGL 523 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~---------------~~~----------~e~i~~al~~~~-------l~~~I~~l 523 (643)
+||||+|.+|+. |++||+.++... ... ..++.+.++.++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999976 999999875200 000 011122222211 12222222
Q ss_pred ccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-c
Q 006496 524 YEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-C 602 (643)
Q Consensus 524 p~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~ 602 (643)
|++ .......+||||||||++||||++.+|++||||||||+||+++...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123334579999999999999999999999999999999999999999999876 3699999999999865 9
Q ss_pred CEEEEEeCCEEE-EEcChhHHhh
Q 006496 603 DIIAVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 603 D~I~vl~~G~Iv-e~G~~~eLl~ 624 (643)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899987654
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-38 Score=349.50 Aligned_cols=209 Identities=22% Similarity=0.430 Sum_probs=165.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|. .+++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 35899999999999999999999999999999999999999999999983 3599
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC---------------CCCHH---HHHHHH----------HHhccHHHHHhcccccc
Q 006496 478 LVSQEPALFAG-TIRENITYGASD---------------KIDES---EIIEAG----------KAANAHDFIAGLYEGYD 528 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~---------------~~~~e---~i~~al----------~~~~l~~~I~~lp~Gld 528 (643)
|++|++.+|.. |++||+.++... ....+ .+.+.. ....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988865 999999865200 00000 000000 001122233332 332
Q ss_pred ccc-CCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEE
Q 006496 529 TWC-GDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIA 606 (643)
Q Consensus 529 t~v-ge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~ 606 (643)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 211 123457999999999999999999999999999999999999999999875 37899999999998864 99999
Q ss_pred EEeCCEE-EEEcChhHHhh
Q 006496 607 VLEQGRV-VEEGSHQSLLA 624 (643)
Q Consensus 607 vl~~G~I-ve~G~~~eLl~ 624 (643)
+|++|++ ++.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 47899988864
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-38 Score=320.09 Aligned_cols=202 Identities=21% Similarity=0.283 Sum_probs=159.8
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE-----------ECCeeCCCCCH
Q 006496 401 EDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-----------IDGRDIRSHHL 469 (643)
Q Consensus 401 ~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~-----------idG~di~~~~~ 469 (643)
.||+++|+.. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. +||.++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999643 25899999 4999999999999999999999999999999999996 88998877644
Q ss_pred HHHhc--ccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHH
Q 006496 470 RSLRR--HIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 470 ~~lr~--~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
+..|. .+++++|++.+++.++.+|+.......-.++++.++++..++.+. ......+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 33433 368888877777655555443321111124556667776665443 33455689999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEc
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G 617 (643)
||||++++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|+ |++++.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988754 6899999999999885 99999995 6666533
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.6e-38 Score=308.87 Aligned_cols=187 Identities=20% Similarity=0.247 Sum_probs=156.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE-ECCeeCCCCCHHHHhcccEEEecCCCCCcc-cHHH
Q 006496 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-IDGRDIRSHHLRSLRRHIALVSQEPALFAG-TIRE 492 (643)
Q Consensus 415 vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~-idG~di~~~~~~~lr~~i~~v~Q~p~lf~g-Tire 492 (643)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 888643 14467888886 9999
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHH
Q 006496 493 NITYGAS-DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ 571 (643)
Q Consensus 493 Ni~~g~~-~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~ 571 (643)
||.+... ...+.++..+.+. ....++..++++++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987421 1234444433321 12345555666664 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 572 SEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 572 te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998876667889999999999986 599999999999999999888875
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=277.47 Aligned_cols=214 Identities=28% Similarity=0.462 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCe--eCCCCCH----H
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR--DIRSHHL----R 470 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~--di~~~~~----~ 470 (643)
+|+++|++|.|... .+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++.+. .
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999753 5899999999999999999999999999999999888999999999765 5555443 4
Q ss_pred HHhcccEEEecCCCCCcc-cHHHHHhcCCC--CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 471 SLRRHIALVSQEPALFAG-TIRENITYGAS--DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~g-TireNi~~g~~--~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
+||+.+|.|+|+-+|.+- |+-||+.=.+. ...+++ +-.+.++...|.++-+..| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 699999999999999975 99999864421 112332 3456778888888888887 46999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 621 (643)
||+||||||..+|++|++||||+||||+-..+|.+.|+++.. +-|-++|||..+..+. |.+++.|++|+|||.|++.-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999988888899988754 6799999999998765 99999999999999999887
Q ss_pred Hhh
Q 006496 622 LLA 624 (643)
Q Consensus 622 Ll~ 624 (643)
.-.
T Consensus 228 ft~ 230 (242)
T COG4161 228 FTE 230 (242)
T ss_pred ccC
Confidence 665
No 329
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-38 Score=287.16 Aligned_cols=205 Identities=27% Similarity=0.435 Sum_probs=171.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
+..++++.+|++. ..++|+|+|++|.+||.+.++||||||||||++++.|+.+|..|+|.+||+.|+.-+- .=+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 5678899999876 3679999999999999999999999999999999999999999999999998876543 248
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGAS-DKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~-~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
+|+|++-|++- ++.||+.||.. ...+.+ ...+.+..++|.++=.+. -..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHH
Confidence 99999999995 99999999841 123332 234456666665543222 35799999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcch-hhhcCEEEEEe--CCEEEEEcCh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLST-IQNCDIIAVLE--QGRVVEEGSH 619 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~-i~~~D~I~vl~--~G~Ive~G~~ 619 (643)
|.-+|+.|+||||.+|||+-|.+.+|+.+.+..+ ++-+++|||.++. +--+++++||+ .|||++.=++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999977654 6889999999987 56799999998 4799986554
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.6e-37 Score=286.13 Aligned_cols=143 Identities=37% Similarity=0.599 Sum_probs=134.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++|++++|++. ++++++||++++||.++|+|++|||||||+++|.|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999642 5899999999999999999999999999999999999999999999995 4699
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
|+|| ||+||+||++||||++++|+
T Consensus 67 ~~~~--------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 67 YFEQ--------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEcc--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCE
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGR 612 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~ 612 (643)
++||||||++||+++...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999886 5899999999999865 89999999985
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-37 Score=345.05 Aligned_cols=213 Identities=18% Similarity=0.320 Sum_probs=170.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRS-LRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~-lr~~ 475 (643)
-|+++|++. .+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.++...+... +|++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998877654 4678
Q ss_pred cEEEecCC---CCCcc-cHHHHHhcCC---CCC-CCHHHHHHHHHHhccHHHHHhcccccc-cccCCCCCCCChhHHHHH
Q 006496 476 IALVSQEP---ALFAG-TIRENITYGA---SDK-IDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDRGLQLSGGQKQRI 546 (643)
Q Consensus 476 i~~v~Q~p---~lf~g-TireNi~~g~---~~~-~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRi 546 (643)
++|+||++ .+|.. |+.+|+.... ... ....+.+ ..+.++++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999996 36654 9999985320 000 0111111 1122333333 232 223333457999999999
Q ss_pred HHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 547 AIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 547 aLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.+ ||+|++|++|+|+..|+++++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 999999999999999999999999999999999987643 6899999999999865 99999999999999999988764
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=298.53 Aligned_cols=197 Identities=32% Similarity=0.475 Sum_probs=175.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCC----CCCHHHHhcccEEEecCCCCCcc-cHH
Q 006496 417 KGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIR----SHHLRSLRRHIALVSQEPALFAG-TIR 491 (643)
Q Consensus 417 ~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~----~~~~~~lr~~i~~v~Q~p~lf~g-Tir 491 (643)
=+++|+.+.-..+||-|+||||||||++++.|+..|++|.|.+||.-+. .+.+.--+++||||+||.-||+- |+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3678888888999999999999999999999999999999999998654 44556678899999999999975 999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHH
Q 006496 492 ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ 571 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~ 571 (643)
-|++||. ...+.++..+++..-++...++..| ..||||||||+||+|||+.+|++|+||||.|+||-.
T Consensus 95 gNL~YG~-~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 95 GNLRYGM-WKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred cchhhhh-cccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 9999995 3456778888999999988888888 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC--ceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 572 SEKVVQEALERLMVE--RTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 572 te~~i~~~i~~~~~~--~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
..+++.--++++.++ --++.|||.+..+ +-||+|++|++|++..+|.-+|..++
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999888888877654 4589999999886 56999999999999999999999863
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.5e-37 Score=342.67 Aligned_cols=208 Identities=22% Similarity=0.289 Sum_probs=167.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEECCeeCCC-CCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGRDIRS-HHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~idG~di~~-~~~~~lr~ 474 (643)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .....+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999964 3589999999999999999999999999999999998876 69999999987642 23345788
Q ss_pred ccEEEecCCCCCc---ccHHHHHhcCCC------CCCC---HHHHHHHHHHhccHH-HHHhcccccccccCCCCCCCChh
Q 006496 475 HIALVSQEPALFA---GTIRENITYGAS------DKID---ESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 475 ~i~~v~Q~p~lf~---gTireNi~~g~~------~~~~---~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~~LSgG 541 (643)
+++|++|++.++. .|+++|+.++.. .... ++++.++++.+++.+ .. +. ....||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DA----PFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cC----chhhCCHH
Confidence 9999999987643 467777653310 0111 234566666666543 21 22 23469999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCcchhhh--cCEEEEEeCCEEEEEc
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-E-RTSVVVAHRLSTIQN--CDIIAVLEQGRVVEEG 617 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~-~TvI~ItHrl~~i~~--~D~I~vl~~G~Ive~G 617 (643)
||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999999988754 3 369999999999974 7999999999998764
Q ss_pred C
Q 006496 618 S 618 (643)
Q Consensus 618 ~ 618 (643)
+
T Consensus 486 ~ 486 (490)
T PRK10938 486 Q 486 (490)
T ss_pred c
Confidence 3
No 334
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=283.21 Aligned_cols=221 Identities=28% Similarity=0.443 Sum_probs=192.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++||+.+|.+ ..+++++|++|++|+.++|+||+|+|||||+..+.|+.++++|+|.|||.++.+.+-++|-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCC--------HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 478 LVSQEPALFAG-TIRENITYGASDKID--------ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~~~~~--------~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
+.-|+.++-.- ||||=+.||+. +++ ...+.+|++--+|.+.=+. | + ..||||||||-=+
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l~dr----y---L----d~LSGGQrQRAfI 146 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDLSDR----Y---L----DELSGGQRQRAFI 146 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccchHHH----h---H----Hhcccchhhhhhh
Confidence 99999998765 99999999964 343 2346777777776553222 1 1 2499999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhhc
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 625 (643)
|-.+..+.+-++||||..+||-+-...+++.++++.. +||+++|-|+.+... .+|.|+-|++|+++.+|+++|+++
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~- 225 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ- 225 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC-
Confidence 9999999999999999999999888888888876654 699999999999975 599999999999999999999996
Q ss_pred CCCcHHHHHHH
Q 006496 626 GPAGAYYSLVS 636 (643)
Q Consensus 626 ~~~g~y~~l~~ 636 (643)
.....++|.
T Consensus 226 --~~~L~eiyd 234 (252)
T COG4604 226 --PEILSEIYD 234 (252)
T ss_pred --HHHHHHHhc
Confidence 345555554
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=340.09 Aligned_cols=214 Identities=19% Similarity=0.321 Sum_probs=168.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH-HHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR-SLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~-~lr~~ 475 (643)
.|+++|++++| . ++|+|+||+|++||++||+|++|||||||+++|+|+.+|++|+|.++|.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 49999999985 1 389999999999999999999999999999999999999999999999999877654 45778
Q ss_pred cEEEecCCC---CCc-ccHHHHHhcC-----CCC-C-CCHHHHHHHHHHhccHHHHHhcccccc-cccCCCCCCCChhHH
Q 006496 476 IALVSQEPA---LFA-GTIRENITYG-----ASD-K-IDESEIIEAGKAANAHDFIAGLYEGYD-TWCGDRGLQLSGGQK 543 (643)
Q Consensus 476 i~~v~Q~p~---lf~-gTireNi~~g-----~~~-~-~~~e~i~~al~~~~l~~~I~~lp~Gld-t~vge~G~~LSgGQr 543 (643)
++|+||++. +|+ .|+.+|+.+. ... . .+.++..+ ...++++.+ |+. -........||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 4777663222 100 1 12111111 122333333 221 112334457999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhH
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 621 (643)
||++||||++++|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997764 4789999999999885 599999999999998887654
Q ss_pred H
Q 006496 622 L 622 (643)
Q Consensus 622 L 622 (643)
+
T Consensus 478 ~ 478 (491)
T PRK10982 478 T 478 (491)
T ss_pred C
Confidence 3
No 336
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=314.83 Aligned_cols=212 Identities=27% Similarity=0.471 Sum_probs=174.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~ 475 (643)
.+++++++.+||. ..+++||||++++||..|+.|++|+|||||+++|.|+|+|++|+|.+||++++=-++ +..|..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999983 468999999999999999999999999999999999999999999999999986666 567888
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCC----CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDK----IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~----~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
|+.|.|++.|++. |+.|||.+|..+. .+-.+..+ .+.+..+.. |++-...+.-..||-|||||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999987 9999999995321 12222211 122222221 3333333444569999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
||||+|+|||||||||-|-|..-+.+.+.++++. .++|||+|||+|..++. |||+-||..|+++..-+
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999987777777887764 47999999999999876 99999999999875443
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-36 Score=280.00 Aligned_cols=155 Identities=43% Similarity=0.665 Sum_probs=145.1
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 399 ELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 399 ~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
+++|++|+|++. ++++++||+|++||.++|+|++|||||||+++|.|+++|.+|+|.+||.++.......++++++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 368999999743 58999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 006496 479 VSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAV 558 (643)
Q Consensus 479 v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~I 558 (643)
++| |||||+||++||||++.+|++
T Consensus 78 ~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 78 VPQ--------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred Eee--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999 999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCE
Q 006496 559 LLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGR 612 (643)
Q Consensus 559 liLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~ 612 (643)
+||||||++||.++...+.+.|.+..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999987655 4899999999999988 59999999975
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-35 Score=333.74 Aligned_cols=202 Identities=27% Similarity=0.331 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+++ ++ ++
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 4999999999964 3589999999999999999999999999999999999999999999955 21 59
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCC-C--CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 477 ALVSQEP-ALFA-GTIRENITYGASD-K--IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 477 ~~v~Q~p-~lf~-gTireNi~~g~~~-~--~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
+|+||++ .++. -|++||+.++... . ..+++..++++..++.+. ..+.. ...||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKK----VGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCc----hhhCCHHHHHHHHHHHH
Confidence 9999997 5665 4999999875210 1 123334455555554211 12333 34699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeC-CEEE-EEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQ-GRVV-EEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~-G~Iv-e~G~~~eLl~ 624 (643)
++.+|++|||||||++||+.+...+.+.|.+. + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999999999999999999999886 3 599999999998765 999999996 7887 4789988876
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.8e-36 Score=338.85 Aligned_cols=201 Identities=27% Similarity=0.387 Sum_probs=166.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++|+|++. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++. .++
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeE
Confidence 49999999999643 35899999999999999999999999999999999999999999998762 469
Q ss_pred EEEecCCCCCcccHHHHHhcC---CCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALFAGTIRENITYG---ASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g---~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|++|++. ...++.+|..+. ..+..+++++.++++..++.+... +. ....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~~----~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQ----PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------cC----CccccCHHHHHHHHHHHHHh
Confidence 99999973 233555553211 012346778888888888753221 12 23579999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEE-EEcChhHHh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVV-EEGSHQSLL 623 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl 623 (643)
.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999888888764 3599999999999875 9999999999998 678877654
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.4e-36 Score=284.32 Aligned_cols=155 Identities=27% Similarity=0.347 Sum_probs=136.7
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEe
Q 006496 401 EDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVS 480 (643)
Q Consensus 401 ~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~ 480 (643)
.|++++|++ ..+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 588999963 3578884 9999999999999999999999999999999999999999963 78999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 006496 481 QEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLL 560 (643)
Q Consensus 481 Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~Ili 560 (643)
|++. ||||||||++||||++.+|++++
T Consensus 68 q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 68 QYID-----------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred ccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 8653 99999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEE--cChhHHhh
Q 006496 561 LDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEE--GSHQSLLA 624 (643)
Q Consensus 561 LDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~--G~~~eLl~ 624 (643)
|||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|+++-.+.. |.|..-.+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 9999999999999999999988654 389999999999987 4999999998866533 66654443
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-35 Score=332.97 Aligned_cols=202 Identities=26% Similarity=0.334 Sum_probs=165.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ ..+|+|+||+|++||+++|+||+|||||||+++|.|+.+|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 4999999999964 3589999999999999999999999999999999999999999999955 21 59
Q ss_pred EEEecCCC-CCc-ccHHHHHhcCCCC-CCC--HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH
Q 006496 477 ALVSQEPA-LFA-GTIRENITYGASD-KID--ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA 551 (643)
Q Consensus 477 ~~v~Q~p~-lf~-gTireNi~~g~~~-~~~--~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA 551 (643)
+|+||++. +++ .|++||+.++... ... +++..++++..++.+. ........||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 665 5999999876310 111 2334445555544221 1122335699999999999999
Q ss_pred HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeC-CEEE-EEcChhHHhh
Q 006496 552 VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQ-GRVV-EEGSHQSLLA 624 (643)
Q Consensus 552 ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~-G~Iv-e~G~~~eLl~ 624 (643)
++.+|++|||||||++||+.+...+.+.|++. + .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999999986 3 599999999998865 999999997 5876 5588887765
No 342
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-35 Score=357.09 Aligned_cols=214 Identities=23% Similarity=0.381 Sum_probs=179.5
Q ss_pred cEEEEeEEEECCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC--CCcEEEECCeeC
Q 006496 397 HIELEDVHFAYPAR----------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGRDI 464 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~--~~G~I~idG~di 464 (643)
.+.|+||++..+.. ....+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998521 123699999999999999999999999999999999999863 789999999886
Q ss_pred CCCCHHHHhcccEEEecCCCCCc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHhccHHHHHhcccccccccCCCC
Q 006496 465 RSHHLRSLRRHIALVSQEPALFA-GTIRENITYGA----SDKIDES----EIIEAGKAANAHDFIAGLYEGYDTWCGDRG 535 (643)
Q Consensus 465 ~~~~~~~lr~~i~~v~Q~p~lf~-gTireNi~~g~----~~~~~~e----~i~~al~~~~l~~~I~~lp~Gldt~vge~G 535 (643)
+ ...+|+.++||+|++.+++ .|++|||.++. +...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3457788999999998876 49999998742 1123332 35677777777543 467777544
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcch--hhhcCEEEEEeC-
Q 006496 536 -LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLST--IQNCDIIAVLEQ- 610 (643)
Q Consensus 536 -~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~--i~~~D~I~vl~~- 610 (643)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++..+ ++|+|+++|+++. ...||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 57999999999999999999999999999999999999999999988743 6899999999984 477999999996
Q ss_pred CEEEEEcChh
Q 006496 611 GRVVEEGSHQ 620 (643)
Q Consensus 611 G~Ive~G~~~ 620 (643)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=336.29 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ ..+|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4999999999964 35899999999999999999999999999999999999999999999741 259
Q ss_pred EEEecCC--CCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccHH-HHHhcccccccccCCCCCCCChhHHHHHHHHHHH
Q 006496 477 ALVSQEP--ALFA-GTIRENITYGASDKIDESEIIEAGKAANAHD-FIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV 552 (643)
Q Consensus 477 ~~v~Q~p--~lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl 552 (643)
+|++|++ .+.. .|+.+|+... .+...++++.++++..++.+ .. +.++ ..||||||||++||||+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKV-------TEET----RRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHh-------cCch----hhCCHHHHHHHHHHHHH
Confidence 9999985 3443 3888887421 12234566777777776632 22 2333 46999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEE-EEcChhHHhh
Q 006496 553 LKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 553 l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl~ 624 (643)
+.+|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+|+ ..|++++..+
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999999886 4599999999999865 9999999999997 7899988743
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.2e-35 Score=335.46 Aligned_cols=201 Identities=24% Similarity=0.388 Sum_probs=165.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++||+++|++ .++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 35899999999999999999999999999999999999999999999 5432 49
Q ss_pred EEEecCC-CCCcc-cHHHHHhcCCCCCC--C--HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 477 ALVSQEP-ALFAG-TIRENITYGASDKI--D--ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 477 ~~v~Q~p-~lf~g-TireNi~~g~~~~~--~--~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
+|++|++ .+++. |+.||+.++.. .. + +.++.+.++..++.+ +-.+.++ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHH
Confidence 9999986 46654 99999987521 11 2 334555555554421 1123444 369999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh-hcCEEEEEe-CCEEEE-EcChhHHhh
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ-NCDIIAVLE-QGRVVE-EGSHQSLLA 624 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~-~~D~I~vl~-~G~Ive-~G~~~eLl~ 624 (643)
|++.+|++|||||||++||..+...+.+.|++. +.|+|+|||+.+.+. -||+|++|+ +|+|++ .|+|++-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999999875 569999999999885 499999998 899976 578877643
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.8e-35 Score=330.56 Aligned_cols=192 Identities=25% Similarity=0.305 Sum_probs=163.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-++++|++++|++ ..|+++||+|++||++||+|++|||||||+++|+|+.+|++|+|.++ . ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------eE
Confidence 4899999999953 24899999999999999999999999999999999999999999986 1 49
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCCCCC-HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEPALF-AGTIRENITYGASDKID-ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p~lf-~gTireNi~~g~~~~~~-~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
+|+||++.++ +.|++||+.++. ...+ ++...++++..++.+..+ .++ ..||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhc
Confidence 9999998754 569999998752 2222 345567777777765433 333 4699999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
+|+||||||||++||.++...+.+.|+++.+ ++|+|+|||++..+. -||+|++|++ ++...|+
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999998754 689999999999876 4999999965 8887776
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.4e-35 Score=277.99 Aligned_cols=161 Identities=24% Similarity=0.348 Sum_probs=131.8
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHH
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIR 491 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTir 491 (643)
..++|+|+||++++|++++|+||||||||||++++++ .+|+|.++|.. .. ..|++++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 3468999999999999999999999999999999863 69999998762 21 12445788877
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC--CCEEEeeccCCCCC
Q 006496 492 ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN--PAVLLLDEATSALD 569 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~--~~IliLDE~TSaLD 569 (643)
.++++..++.+. .......+||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 223344333211 24556678999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeC------CEEEEEc
Q 006496 570 SQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQ------GRVVEEG 617 (643)
Q Consensus 570 ~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~------G~Ive~G 617 (643)
+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++ |++||+|
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999999998865 47999999999999999999999966 5566654
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=275.19 Aligned_cols=205 Identities=27% Similarity=0.416 Sum_probs=171.7
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCC--CCc-c
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA--LFA-G 488 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~--lf~-g 488 (643)
++++|+++||+|+.|++|-|+|.+|||||||++.+.|-..|++|+|.|||+|+.+++.+.--..++-|+|||- .|. -
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999998888999999998 454 4
Q ss_pred cHHHHHhcCCCC----CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q 006496 489 TIRENITYGASD----KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEA 564 (643)
Q Consensus 489 TireNi~~g~~~----~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~ 564 (643)
||.||+.+.... ..+..- . .=......+-+..+|.|++-.++.+-.-|||||||=++|+-|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~l-n-~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSAL-N-ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhh-h-HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999986321 122210 0 0112223345678899999888888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcch-hhhcCEEEEEeCCEEEEEcC
Q 006496 565 TSALDSQSEKVVQEALERLM--VERTSVVVAHRLST-IQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 565 TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~-i~~~D~I~vl~~G~Ive~G~ 618 (643)
|+||||.+...|++.-.+.- .+-|+++|||.++- +..-+|.++|++|+||-.=+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999888776655432 25699999999986 56689999999999985433
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=326.76 Aligned_cols=208 Identities=23% Similarity=0.348 Sum_probs=157.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ ..+|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 358999999999999999999999999999999999999999999999852 388
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCC---C-----------HHHHHHHH---H-------HhccHHHHHhcccccc-cccC
Q 006496 478 LVSQEPALFAGTIRENITYGASDKI---D-----------ESEIIEAG---K-------AANAHDFIAGLYEGYD-TWCG 532 (643)
Q Consensus 478 ~v~Q~p~lf~gTireNi~~g~~~~~---~-----------~e~i~~al---~-------~~~l~~~I~~lp~Gld-t~vg 532 (643)
|++|++..+..|+.+++.-+. ..+ + ...+.... . ...+.+.+..+ |+. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~ 144 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGD-REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLE 144 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhh-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhc
Confidence 888876555556655543110 000 0 00000000 0 00112223333 332 1223
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 533 DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 533 e~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
..-..||||||||++|||||+.+|+||||||||++||+++...+.+.|++. +.|+|+|||+...+.. ||+|++|++|
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 334579999999999999999999999999999999999999999998875 5799999999999865 9999999999
Q ss_pred EEEE-EcChhHHhh
Q 006496 612 RVVE-EGSHQSLLA 624 (643)
Q Consensus 612 ~Ive-~G~~~eLl~ 624 (643)
+++. .|+|+....
T Consensus 223 ~i~~~~g~~~~~~~ 236 (638)
T PRK10636 223 SLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEecCCHHHHHH
Confidence 9974 688876654
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-35 Score=262.66 Aligned_cols=212 Identities=24% Similarity=0.355 Sum_probs=175.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCC-CC------
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA-LF------ 486 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~-lf------ 486 (643)
.+.+.|||+.++|+.+||+|.+|||||||+++|.|+.+|++|+|.+||.++.-=+...-.++|-.++|||. -|
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 46899999999999999999999999999999999999999999999999988888888888999999995 22
Q ss_pred ----cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 006496 487 ----AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562 (643)
Q Consensus 487 ----~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLD 562 (643)
++.++-|=.+. ++.-.+++.+.|+.+||..+=. +-. ...||-|||||+||||||+-+|+|+|-|
T Consensus 107 GqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL~Pdha------n~~----~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 107 GQILDFPLRLNTDLE--PEQRRKQIFETLRMVGLLPDHA------NYY----PHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred hhHhcchhhhcccCC--hHHHHHHHHHHHHHhccCcccc------ccc----hhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 33333443333 2344578999999998854322 211 2469999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH--cCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHh
Q 006496 563 EATSALDSQSEKVVQEALERL--MVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 563 E~TSaLD~~te~~i~~~i~~~--~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
||..+||.....++.+...++ .-+-.-|.|+.++-.++. +|+|+||+.|+++|+|++.++++......-.+|++.
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 999999999888777766443 336688999999999987 999999999999999999999986445556667654
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=290.02 Aligned_cols=231 Identities=28% Similarity=0.422 Sum_probs=190.3
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-----CCcEEEECCeeCCCCCHHH
Q 006496 398 IELEDVHFAYPAR-PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGRDIRSHHLRS 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-----~~G~I~idG~di~~~~~~~ 471 (643)
++++|++.+|... ....++++|||+|++||++|+||+||||||--.+.++|+++. .+|+|.++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 7888988887522 245789999999999999999999999999999999999964 4789999999999999998
Q ss_pred Hhc----ccEEEecCCCC-Cc------ccHHHHHhcCC--CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCC
Q 006496 472 LRR----HIALVSQEPAL-FA------GTIRENITYGA--SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQL 538 (643)
Q Consensus 472 lr~----~i~~v~Q~p~l-f~------gTireNi~~g~--~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~L 538 (643)
+|. +|+.|+|||.- .| .-|.|-|.+.. ....-.+++.+.|+.+++.+-=.. +..-...|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPHeL 158 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPHEL 158 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCccc
Confidence 876 79999999972 12 12455565542 122345678888888887653222 22334679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEE
Q 006496 539 SGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVE 615 (643)
Q Consensus 539 SgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive 615 (643)
|||||||+-||-||..+|++||-||||.|||....++|.+.|+++-+ +..+++|||+|..++. ||||+||.+|+|||
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999987654 5789999999999976 99999999999999
Q ss_pred EcChhHHhhcCCCcHHHHHHHh
Q 006496 616 EGSHQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 616 ~G~~~eLl~~~~~g~y~~l~~~ 637 (643)
.|+-++|.++ +...|.++.-.
T Consensus 239 ~~~t~~lF~~-PqHpYTr~Ll~ 259 (534)
T COG4172 239 TGTTETLFAA-PQHPYTRKLLA 259 (534)
T ss_pred cCcHHHHhhC-CCChHHHHHHh
Confidence 9999999986 66778775543
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-34 Score=352.16 Aligned_cols=203 Identities=23% Similarity=0.259 Sum_probs=169.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC----CCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY----DPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG 488 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~----~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g 488 (643)
+.+|+|+|+++++||.++|+||||||||||+++|.|.. .|.+|+|.+||.++.+.. +.+|+.++||+|++.+|+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 578999999999987654 4567889999999988875
Q ss_pred -cHHHHHhcCCC---C-----CCCHHHH-----HHHHHHhccHHHHHhcccccccccCC-CCCCCChhHHHHHHHHHHHc
Q 006496 489 -TIRENITYGAS---D-----KIDESEI-----IEAGKAANAHDFIAGLYEGYDTWCGD-RGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 489 -TireNi~~g~~---~-----~~~~e~i-----~~al~~~~l~~~I~~lp~Gldt~vge-~G~~LSgGQrQRiaLARAll 553 (643)
|++||+.|+.. + ..++++. .++++..+| .+-.||.||+ ....||||||||++||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 99999987521 0 1233332 223444444 3346788875 34579999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcc-hh-hhcCEEEEEeCCEEEEEcChhHHh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLS-TI-QNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~-~i-~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .+ ..+|+|++|++|+++..|+++++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999998764 689999999974 44 569999999999999999998874
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5e-34 Score=324.42 Aligned_cols=207 Identities=26% Similarity=0.412 Sum_probs=157.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. . .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 899999999964 35899999999999999999999999999999999999999999999873 1 267
Q ss_pred EEecCCCC-CcccHHHHHhcCCC-----------------CCCCHHHHHHH------HH-------HhccHHHHHhcccc
Q 006496 478 LVSQEPAL-FAGTIRENITYGAS-----------------DKIDESEIIEA------GK-------AANAHDFIAGLYEG 526 (643)
Q Consensus 478 ~v~Q~p~l-f~gTireNi~~g~~-----------------~~~~~e~i~~a------l~-------~~~l~~~I~~lp~G 526 (643)
+++|++.. ..+++.+++..+.. .+..++.+... +. ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887643 23566666432200 00000101000 00 01122233332 2
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEE
Q 006496 527 YDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDII 605 (643)
Q Consensus 527 ldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I 605 (643)
+. ....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.+. +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 12233579999999999999999999999999999999999999999999876 3699999999999865 9999
Q ss_pred EEEeCCEEEE-EcChhHHhh
Q 006496 606 AVLEQGRVVE-EGSHQSLLA 624 (643)
Q Consensus 606 ~vl~~G~Ive-~G~~~eLl~ 624 (643)
++|++|+++. .|+|++.+.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999985 599887654
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.7e-34 Score=346.16 Aligned_cols=209 Identities=26% Similarity=0.376 Sum_probs=169.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCC---CcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc-c
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA-G 488 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~---~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~-g 488 (643)
..+|+|+|+.|+|||.++|+||+|||||||+++|+|.++|. +|+|.+||.++.+.. .|+.++||+|++.+|+ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987654 3788999999988876 5
Q ss_pred cHHHHHhcCCC----C-------CCCH----------HHHHHHHHHh---c------cHHHHH--hcccccccccCCCC-
Q 006496 489 TIRENITYGAS----D-------KIDE----------SEIIEAGKAA---N------AHDFIA--GLYEGYDTWCGDRG- 535 (643)
Q Consensus 489 TireNi~~g~~----~-------~~~~----------e~i~~al~~~---~------l~~~I~--~lp~Gldt~vge~G- 535 (643)
|++||+.|+.. . +.+. +++.+..+++ + .++.++ .|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 0 0111 1111111110 0 122333 33445688898643
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcc--hhhhcCEEEEEeCC
Q 006496 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLS--TIQNCDIIAVLEQG 611 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~--~i~~~D~I~vl~~G 611 (643)
..||||||||++||||++.+|++++|||||++||+.+...+.+.|++..+ ++|+|+++|+++ ...-||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 57999999999999999999999999999999999999999999998753 789999999973 45679999999999
Q ss_pred EEEEEcChhHHhh
Q 006496 612 RVVEEGSHQSLLA 624 (643)
Q Consensus 612 ~Ive~G~~~eLl~ 624 (643)
+++.+|+.+++++
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999988863
No 354
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-30 Score=264.40 Aligned_cols=441 Identities=18% Similarity=0.230 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006496 142 YMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAIC---SRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISW 218 (643)
Q Consensus 142 ~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~---~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (643)
+.+.....++..-.++..+... .||.. .+.-|.+- |+++.|+..+.+........+.-+++.++.+-..+.-..-
T Consensus 183 klaLafrtrL~~h~y~~Y~snq-TyY~V-sn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~ 260 (728)
T KOG0064|consen 183 KLALAFRTRLTRHAYDMYLSNQ-TFYKV-SNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSAT 260 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-ceEEE-ecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 4444555555555555555544 55542 33444444 4799999999998888888888877766543332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q 006496 219 RLALVIIAVQPLVIVCLYGKEVLLK-------SMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPR 291 (643)
Q Consensus 219 ~l~lv~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 291 (643)
-++.....+.++..++..+.++ +...+.......+...=+-.+.+-++|-.|+..+.+.++.+...+...
T Consensus 261 ---s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~ 337 (728)
T KOG0064|consen 261 ---SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLV 337 (728)
T ss_pred ---cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 1111110011112222222222 222223333333444447788999999999999999999888887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HcCCC------C--HHHHHHHHHHHHHHHHHH
Q 006496 292 REGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLV------------GRGYI------D--GKSLFEIFLILVSTGKVI 351 (643)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv------------~~~~~------~--~g~~~~~~~~~~~~~~~~ 351 (643)
......-....++..+-++++- ..|-|.-++ ..+.. . .-.+.+.=.++......+
T Consensus 338 ~qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAi 412 (728)
T KOG0064|consen 338 EQMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAI 412 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 5433333333333333333321 112111111 11110 0 122333334444455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---ccCcC-------CCCCCC--------CC-CCCC----CccccEEEEeEEEECC
Q 006496 352 ADAGTMTTDIAKGSDAVASVFAVL---DRHTK-------IDPDDL--------NG-YQPE----KIIGHIELEDVHFAYP 408 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~a~~ri~~~~---~~~~~-------~~~~~~--------~~-~~~~----~~~~~I~~~nvsf~Y~ 408 (643)
..+++..-++.+..+--.|+++.+ ++... ..+..+ +. +.+. .....|.++||-.--|
T Consensus 413 eRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP 492 (728)
T KOG0064|consen 413 ERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITP 492 (728)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceecc
Confidence 667777777776666666665432 21110 000000 00 0000 0123489999988777
Q ss_pred CCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc
Q 006496 409 ARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG 488 (643)
Q Consensus 409 ~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g 488 (643)
.. + .+...+||+|++|-.+-|.||+|||||+|.+.|.|++|...|...+-- +.+|-|+||.|+.=-|
T Consensus 493 ~~-~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 493 AG-D-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGG 559 (728)
T ss_pred Cc-c-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcC
Confidence 54 2 478899999999999999999999999999999999999888876633 2349999999998889
Q ss_pred cHHHHHhcCC------CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 006496 489 TIRENITYGA------SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLD 562 (643)
Q Consensus 489 TireNi~~g~------~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLD 562 (643)
|+||-|-|-. ...++|+++.+.|..+.|+..+ +-..|.|..- +--.-||||+|||++.||.+|++|+--+||
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 9999987742 2457899999999999998554 4456777654 333469999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEe
Q 006496 563 EATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLE 609 (643)
Q Consensus 563 E~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~ 609 (643)
|+|||+-.+.|..+.++.+.. +-+.|.||||++..+.-...+-.|
T Consensus 638 EcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred hhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhcc
Confidence 999999999999999998875 789999999999887666665553
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=246.88 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC---CCcEEEECCeeCCCCCHHHHh
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP---LKGVVKIDGRDIRSHHLRSLR 473 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~---~~G~I~idG~di~~~~~~~lr 473 (643)
.+.++||+.+-|++ ..|-|+||+|.+||++-+.||||||||||+.-+.|.+.+ .+|++.+|++++..++. -|
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 46789999988754 579999999999999999999999999999999999987 48999999999988764 57
Q ss_pred cccEEEecCCCCCcc-cHHHHHhcCCCCCCC----HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 474 RHIALVSQEPALFAG-TIRENITYGASDKID----ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 474 ~~i~~v~Q~p~lf~g-TireNi~~g~~~~~~----~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
+++++.+||++||+- |+-+||.|..++... ......|+++++|+++..+.|+ +||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHH
Confidence 889999999999986 999999998543332 2345678999999998888773 699999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHH--cCCceEEEEccCcchhhhcCEEE
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERL--MVERTSVVVAHRLSTIQNCDIIA 606 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~ItHrl~~i~~~D~I~ 606 (643)
-|+|+..|+.++||||.|.||..-...+.+-.... ..+--+|.|||++.-+..-.||+
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999999998777776655332 23667999999998777444443
No 356
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-33 Score=264.59 Aligned_cols=208 Identities=27% Similarity=0.392 Sum_probs=170.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHL-RSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~-~~lr~~ 475 (643)
-|+++||+++|.+ +++|+|||++|++||+-+|+|++|||||||++++.|.++|++|.+.+-|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4999999999964 469999999999999999999999999999999999999999999999999998888 999999
Q ss_pred cEEEecCCC---CCcccHHHHHhc------CCCC-CCCHHHHHH---HHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 476 IALVSQEPA---LFAGTIRENITY------GASD-KIDESEIIE---AGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 476 i~~v~Q~p~---lf~gTireNi~~------g~~~-~~~~e~i~~---al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
||+|+-+-+ .=+.++||=+.= |... ++++++..+ .++.+++.+. .+..=..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 999984322 113455554432 2112 466665444 3455544432 222234699999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcC
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV---ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~---~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~ 618 (643)
|||+-|||||.++|.+||||||+++||....+.+.+.+.+... ..|+|+|||+.+.+. .+++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999888888887654 468999999999875 579999999999998874
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.3e-33 Score=264.89 Aligned_cols=189 Identities=32% Similarity=0.441 Sum_probs=159.1
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc--cc
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA--GT 489 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~--gT 489 (643)
..++|+||||++++||++||+|++|||||||+++|.|.|+|++|+|.++|. ++.+---..=|+ -|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346899999999999999999999999999999999999999999999997 443333333333 48
Q ss_pred HHHHHhcC-----CCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q 006496 490 IRENITYG-----ASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEA 564 (643)
Q Consensus 490 ireNi~~g-----~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~ 564 (643)
-||||.+- ....--++.+.++.+-+.|.+|+ |.|| .+.|-|.+-|||.|=|.--+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-------~~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-------DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-------hCch----hhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 89998752 11122355677788888888886 3444 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-cCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 565 TSALDSQSEKVVQEALERL-MVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 565 TSaLD~~te~~i~~~i~~~-~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
.|.-|+.=.++=.+.+.+. .+++|+|+|+|.++.|++ ||++++|++|+|+..|++++..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999998777666677766 678999999999999975 99999999999999999999986
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.3e-34 Score=318.27 Aligned_cols=193 Identities=24% Similarity=0.324 Sum_probs=159.2
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEE-----------ECCeeCCCCCH
Q 006496 401 EDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-----------IDGRDIRSHHL 469 (643)
Q Consensus 401 ~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~-----------idG~di~~~~~ 469 (643)
++++++|.. +..+|++++ ++++||++||+||+|||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999963 235899999 9999999999999999999999999999999999998 99998875432
Q ss_pred H--HHhcc----cEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHH
Q 006496 470 R--SLRRH----IALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQK 543 (643)
Q Consensus 470 ~--~lr~~----i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQr 543 (643)
+ ..+.+ +.+++|.|.+|.+|++||+... -..+++.++++..++.+. .|..+ .+||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----~~~~~~~~~l~~l~l~~~-------~~~~~----~~LSgGe~ 218 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----DERGKLDEVVERLGLENI-------LDRDI----SELSGGEL 218 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh----hHHHHHHHHHHHcCCchh-------hcCCh----hhCCHHHH
Confidence 1 11223 4455667778889999999643 124567778887777543 23444 46999999
Q ss_pred HHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCC
Q 006496 544 QRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQG 611 (643)
Q Consensus 544 QRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G 611 (643)
||++||||++++|++||||||||+||+++...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999987668999999999999865 8999999873
No 359
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=264.23 Aligned_cols=214 Identities=23% Similarity=0.418 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.+++++|+.+|.+ ..+++||||+++||+..|++|++|+||||.+++|+|+++|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 3799999999964 468999999999999999999999999999999999999999999999998875 567889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCC-CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEPALFAG-TIRENITYGA-SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~-~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
||.|-+--|+.. |+.|-|.|.. -...+.+++.+ .+..|++++.- --.-..+-..||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999975 9999998752 22355555544 23456666531 111123445799999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
+|+++|||||+|+|||.+.+.+.+.|.++. ++.|+|+.|||++.++. ||+++.|++|+.|-+|+-++..+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999988765 47899999999999965 99999999999999999998876
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=258.84 Aligned_cols=227 Identities=26% Similarity=0.388 Sum_probs=189.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEECCeeCCCCCHHH-Hhc
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGRDIRSHHLRS-LRR 474 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl--~~~~~G~I~idG~di~~~~~~~-lr~ 474 (643)
++++|++.+-.+. +.+|+++||+|++||..||.||+|||||||.++|+|. |++++|+|.+||.||.++++++ -|.
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 7899999887532 4699999999999999999999999999999999997 6899999999999999999975 677
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCCC--C------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGASD--K------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~~--~------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
-|....|.|.=++| |+++=++.+.+. . ...+++.++++..++++.. ++..|++ .+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHHH
Confidence 89999999999998 888777644211 0 1245788888888888732 2334443 599999999
Q ss_pred HHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhc--CEEEEEeCCEEEEEcChhHH
Q 006496 546 IAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNC--DIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 546 iaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~--D~I~vl~~G~Ive~G~~~eL 622 (643)
.-|+-+++-+|++.|||||-|+||-.+-+.|-+.+..+.. ++++++|||.-..+... |++.||-+|+|+..|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 9999999999999999999999999999999999988754 68899999998887665 99999999999999999 77
Q ss_pred hhcCCCcHHHHHHH
Q 006496 623 LAKGPAGAYYSLVS 636 (643)
Q Consensus 623 l~~~~~g~y~~l~~ 636 (643)
...-++.-|..+..
T Consensus 232 ~~~le~~gy~~~~~ 245 (251)
T COG0396 232 AEELEEKGYDWLKE 245 (251)
T ss_pred HHHHHHhchHHhhh
Confidence 65211222554443
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.1e-33 Score=259.20 Aligned_cols=136 Identities=44% Similarity=0.679 Sum_probs=126.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc-cHHHHH
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG-TIRENI 494 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g-TireNi 494 (643)
|+|+||+|++||+++|+|++|||||||+++|+|.++|.+|+|.+||.++.+.+...+|+.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988 59999
Q ss_pred hcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCC
Q 006496 495 TYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATS 566 (643)
Q Consensus 495 ~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TS 566 (643)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24567888888887765 45778888889999999999999999999999999999996
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7e-33 Score=315.15 Aligned_cols=221 Identities=24% Similarity=0.300 Sum_probs=163.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC---CCCCcEEEECCeeCCC--CCH--
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFY---DPLKGVVKIDGRDIRS--HHL-- 469 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~---~~~~G~I~idG~di~~--~~~-- 469 (643)
.|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+++|.|.. .|.+|+|.+.++++.. .+.
T Consensus 177 ~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 59999999999643 4899999999999999999999999999999999864 5789999865554221 111
Q ss_pred ----------HHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCH----HHHHHHHHHhccH----------HHHHhccc
Q 006496 470 ----------RSLRRHIALVSQEPALFAGTIRENITYGASDKIDE----SEIIEAGKAANAH----------DFIAGLYE 525 (643)
Q Consensus 470 ----------~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~----e~i~~al~~~~l~----------~~I~~lp~ 525 (643)
..+++.+++++|+|.+...+..+|.........++ +++.++++..++. +.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 12356689999988765555555542211111121 2344444433221 222222
Q ss_pred cccc-ccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cC
Q 006496 526 GYDT-WCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CD 603 (643)
Q Consensus 526 Gldt-~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D 603 (643)
|++. .....-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 2221 111122469999999999999999999999999999999999999999999886 6899999999999876 99
Q ss_pred EEEEEeCCEEE-EEcChhHHhh
Q 006496 604 IIAVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 604 ~I~vl~~G~Iv-e~G~~~eLl~ 624 (643)
+|++|++|+++ ..|++++...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 5778765543
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=300.17 Aligned_cols=206 Identities=32% Similarity=0.471 Sum_probs=165.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-|+++|++++|++ .++|+|+||++.+|++|||||++|||||||+++|.|..+|++|+|..++- -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999964 46899999999999999999999999999999999999999999999873 139
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCC--HHHHHHHHH------------------H-------hccHHHHHhc--ccc
Q 006496 477 ALVSQEPALFAG-TIRENITYGASDKID--ESEIIEAGK------------------A-------ANAHDFIAGL--YEG 526 (643)
Q Consensus 477 ~~v~Q~p~lf~g-TireNi~~g~~~~~~--~e~i~~al~------------------~-------~~l~~~I~~l--p~G 526 (643)
+|++|++.+.++ |+++.+..+. .+.. ..+++++.. . +.+...+.+| |.-
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGF-GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhh-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 999999999976 9999987662 1111 011111111 0 1222223333 111
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEE
Q 006496 527 YDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDII 605 (643)
Q Consensus 527 ldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I 605 (643)
+++++ +||||||-|++|||||+.+||||+|||||.+||.++-.-+.+-|.+ +++ |+|+|||+-+.+.+ |++|
T Consensus 148 -~~~~~----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 148 -DRPVS----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred -cCchh----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhhe
Confidence 45554 6999999999999999999999999999999999999999999986 455 99999999999966 9999
Q ss_pred EEEeCCEEE-EEcChhHHhh
Q 006496 606 AVLEQGRVV-EEGSHQSLLA 624 (643)
Q Consensus 606 ~vl~~G~Iv-e~G~~~eLl~ 624 (643)
+-+++|++. ..|+|+.-++
T Consensus 221 ~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 221 LELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred EEecCCceeEecCCHHHHHH
Confidence 999999875 6678877665
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-32 Score=308.29 Aligned_cols=219 Identities=30% Similarity=0.465 Sum_probs=186.5
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC---CCcEEEECCeeCCCCCHH
Q 006496 396 GHIELEDVHFAYPARP--NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP---LKGVVKIDGRDIRSHHLR 470 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~---~~G~I~idG~di~~~~~~ 470 (643)
-.++|+|++..-++.+ .+.+|+|||.+++|||..||.||||||||||+++|+|..+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3589999999887542 46799999999999999999999999999999999999974 7999999994 46678
Q ss_pred HHhcccEEEecCCCCCcc-cHHHHHhcCC----CCCCCH----HHHHHHHHHhccHHHHHhcccccccccCC-CCCCCCh
Q 006496 471 SLRRHIALVSQEPALFAG-TIRENITYGA----SDKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGD-RGLQLSG 540 (643)
Q Consensus 471 ~lr~~i~~v~Q~p~lf~g-TireNi~~g~----~~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge-~G~~LSg 540 (643)
.+|+..+||+||..+++. ||||++.|.. +...+. +++.++++.-+|.+ + -||.||. ++..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 899999999999999986 9999998753 222233 34555555555542 2 3788874 3357999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcch--hhhcCEEEEEeCCEEEEEc
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLST--IQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~--i~~~D~I~vl~~G~Ive~G 617 (643)
|||+|+++|--++.||+||+||||||+||+.+...+.+.++++. ++||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999998864 47999999999986 5779999999999999999
Q ss_pred ChhHHhh
Q 006496 618 SHQSLLA 624 (643)
Q Consensus 618 ~~~eLl~ 624 (643)
+++++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9988764
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=249.36 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC-eeCCCCCHHHH-hc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG-RDIRSHHLRSL-RR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG-~di~~~~~~~l-r~ 474 (643)
.++++||+.+++.- .+|+|+||++.+||.-+|+||+|+||||++..+.|-.+|++|++.++| .|++.++.... |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 37899999999643 589999999999999999999999999999999999999999999999 99999998775 66
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCCCCC-------------CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCCh
Q 006496 475 HIALVSQEPALFAG-TIRENITYGASDK-------------IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSG 540 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~~~~-------------~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSg 540 (643)
-|+-=+|.|..|.. |++||+.+..+.+ ...+++.++|...+|.+--. .-..+||.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 69999999999987 9999998763211 12236777777776655433 22357999
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcCh
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~ 619 (643)
||||++-|+--+..+|++|+||||++++-.+.....-+.|+.+...+++++|-|++..++. ||+|-||..|.+..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999444334455667777789999999999999975 999999999999999999
Q ss_pred hHHhhc
Q 006496 620 QSLLAK 625 (643)
Q Consensus 620 ~eLl~~ 625 (643)
+++.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 999864
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=243.99 Aligned_cols=189 Identities=23% Similarity=0.356 Sum_probs=159.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++.+|++..-. +..++.++||++.+||.+-|+||+|||||||+++|.|+++|++|+|.++|.++.... +..++.+.
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34455655443 346899999999999999999999999999999999999999999999999988754 44588899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 478 LVSQEPALFAG-TIRENITYGAS--DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 478 ~v~Q~p~lf~g-TireNi~~g~~--~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
|+...|-+=.. |+.||+.|... ...+++.+|+|++.++|.++ .|.+++ +||-||+.|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-------~dlp~~----~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPVG----QLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-------cccchh----hcchhHHHHHHHHHHHcC
Confidence 99999888765 99999998631 12467899999999999865 344454 599999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN 601 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~ 601 (643)
.+|++|||||++|||.+....+...+.... ++-.||..||..--+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999988887654 46789999999766543
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.1e-31 Score=261.71 Aligned_cols=190 Identities=24% Similarity=0.297 Sum_probs=127.2
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHH-HHHhccCCCCCcEEEEC-C------eeCCCCCHH---HHhc-ccEEE
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTII-GLIERFYDPLKGVVKID-G------RDIRSHHLR---SLRR-HIALV 479 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~-~lL~gl~~~~~G~I~id-G------~di~~~~~~---~lr~-~i~~v 479 (643)
...+|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+... .++. ...+.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 34689999999999999999999999999996 3332 13433221 0 111111111 1221 23455
Q ss_pred ecCCCCC-c-----ccHHHHHhcCC--CCCCCHHHHHHHHHHhccHHHHHhccccccc-ccCCCCCCCChhHHHHHHHHH
Q 006496 480 SQEPALF-A-----GTIRENITYGA--SDKIDESEIIEAGKAANAHDFIAGLYEGYDT-WCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 480 ~Q~p~lf-~-----gTireNi~~g~--~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRiaLAR 550 (643)
.|++... + +++.+...+.+ ....+.++..+.++.++ +.. .......+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVG-----------LGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCC-----------CCcccccCccCcCCHHHHHHHHHHH
Confidence 5554321 1 12222221110 00011111123333333 322 245556789999999999999
Q ss_pred HHccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEE------eCCEEEEEc
Q 006496 551 AVLKNP--AVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVL------EQGRVVEEG 617 (643)
Q Consensus 551 All~~~--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl------~~G~Ive~G 617 (643)
|++++| +++||||||++||+.+...+.+.|++.. .+.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999999999999999998764 468999999999999999999999 999999987
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=8.5e-30 Score=277.73 Aligned_cols=201 Identities=31% Similarity=0.430 Sum_probs=174.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-++++|++++|++. .++++++||.|.+|++|||+||+|+|||||+++|.|...|.+|+|.++-. + ++
T Consensus 321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~i 387 (530)
T COG0488 321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KI 387 (530)
T ss_pred eEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EE
Confidence 59999999999753 46899999999999999999999999999999999999999999988542 2 49
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEP-ALFA-GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p-~lf~-gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
||.+|+- .+++ .|+-|++.-.. ++..+.+++..|...++...-. .++|+ .||||||-|+.||+.++.
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~-~~~~e~~~r~~L~~f~F~~~~~------~~~v~----~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGF-PDGDEQEVRAYLGRFGFTGEDQ------EKPVG----VLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhC-ccccHHHHHHHHHHcCCChHHH------hCchh----hcCHhHHHHHHHHHHhcc
Confidence 9999988 4444 38999997653 3445788999999888765432 34443 699999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEE-cChhHHhh
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEE-GSHQSLLA 624 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~-G~~~eLl~ 624 (643)
+|.+|||||||..||.++-..+.++|... +-|||+|||+-..+.. |++|+.+++ ++.++ |+|++-.+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999886 6799999999999976 999999999 88877 89988876
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-30 Score=261.44 Aligned_cols=193 Identities=28% Similarity=0.368 Sum_probs=141.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHh-----c-cC----CCCCc-----------EEEECCeeCCCCCHHH--
Q 006496 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIE-----R-FY----DPLKG-----------VVKIDGRDIRSHHLRS-- 471 (643)
Q Consensus 415 vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~-----g-l~----~~~~G-----------~I~idG~di~~~~~~~-- 471 (643)
.|+|++++||.|+.++|+|+||||||||++.++ + +. .|..+ -|.||..+|..-+...
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 489999999999999999999999999998653 2 11 13222 3666666665432221
Q ss_pred --------Hhc----------------ccEEEecCCCC-CcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccc
Q 006496 472 --------LRR----------------HIALVSQEPAL-FAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEG 526 (643)
Q Consensus 472 --------lr~----------------~i~~v~Q~p~l-f~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~G 526 (643)
+|+ .+.|..++... .+-|+.||+.|... ....++..++++.+ |
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~v-----------g 157 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDV-----------G 157 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHc-----------C
Confidence 111 12344444432 24477777766421 11122333344444 4
Q ss_pred ccc-ccCCCCCCCChhHHHHHHHHHHHccC---CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh
Q 006496 527 YDT-WCGDRGLQLSGGQKQRIAIARAVLKN---PAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN 601 (643)
Q Consensus 527 ldt-~vge~G~~LSgGQrQRiaLARAll~~---~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~ 601 (643)
++. ..++...+||||||||++|||||.++ |+++||||||++||+++...+.+.|+++.+ +.|+|+|+|+++.++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 443 35677789999999999999999996 799999999999999999999999988653 6899999999999999
Q ss_pred cCEEEEE------eCCEEEEEcCh
Q 006496 602 CDIIAVL------EQGRVVEEGSH 619 (643)
Q Consensus 602 ~D~I~vl------~~G~Ive~G~~ 619 (643)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999985
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=250.84 Aligned_cols=200 Identities=27% Similarity=0.385 Sum_probs=157.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEE-ecCCCCC-----c
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALV-SQEPALF-----A 487 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v-~Q~p~lf-----~ 487 (643)
++.+||||+||||+.++.+|++|+||||++++|.|+..|++|+|.++|.+--+=..+.+|+ +++| .|...+. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~-~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH-HHHHhhhhheeeeechhh
Confidence 4789999999999999999999999999999999999999999999999876644444555 4333 3433221 1
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCC
Q 006496 488 GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSA 567 (643)
Q Consensus 488 gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSa 567 (643)
.|++=|=..- +++|++..+- ++.+++-| +++..+-..-..||=|||-|.-||-||+++|+||+|||||=+
T Consensus 117 ds~~v~~~Iy---~Ipd~~F~~r-----~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 117 DSLEVLKLIY---EIPDDEFAER-----LDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhHHHHHHHH---hCCHHHHHHH-----HHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 2333222111 3555555443 23344433 444445555578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 568 LDSQSEKVVQEALERLM--VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 568 LD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||..+...|.+.+++.- .++||+..||.++-| +.||||+.|++|+++..|+.++|.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 99999999999987653 468999999999987 5699999999999999999999987
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-30 Score=230.09 Aligned_cols=228 Identities=26% Similarity=0.404 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECC-----eeCCCCCHHH-
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG-----RDIRSHHLRS- 471 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG-----~di~~~~~~~- 471 (643)
++++++|..|... .--+|+||++.|||..||||+||||||||+++|.+-+.|+.|.|.++- .|+-.++..+
T Consensus 7 L~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 7 LSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred eeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 7889999999754 357999999999999999999999999999999999999999999865 3343444333
Q ss_pred ---HhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHH-------HHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 472 ---LRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEA-------GKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 472 ---lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~a-------l~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
+|.--++|.|+|- +-+|--+.-|. ++- |++.++ ++ +.+.+|++...- ..+.+.+....+|||
T Consensus 84 R~L~RTeWG~VhQnP~---DGLRm~VSAG~--NiG-ERlma~G~RHYG~iR-~~a~~WL~~VEI-~~~RiDD~PrtFSGG 155 (258)
T COG4107 84 RRLLRTEWGFVHQNPR---DGLRMQVSAGG--NIG-ERLMAIGARHYGNIR-AEAQDWLEEVEI-DLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHhhhccceeecCcc---ccceeeeccCC--ccc-hhHHhhhhhhhhhHH-HHHHHHHHhccc-CcccccCcccccchH
Confidence 4556799999995 11221111111 011 111110 11 123356665532 235677888999999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhhh-cCEEEEEeCCEEEEEcC
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~ 618 (643)
.+||+-|||-|...|+++.+||||-+||....+.+.+.++.+-. +-.+++|||.+...+- +||.+||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999987755 3589999999998864 99999999999999999
Q ss_pred hhHHhhcCCCcHHHHHHHh
Q 006496 619 HQSLLAKGPAGAYYSLVSL 637 (643)
Q Consensus 619 ~~eLl~~~~~g~y~~l~~~ 637 (643)
.+..+.+ +.-.|.+|.-.
T Consensus 236 TDrvLDD-P~hPYTQLLVS 253 (258)
T COG4107 236 TDRVLDD-PHHPYTQLLVS 253 (258)
T ss_pred ccccccC-CCCchHHHHHH
Confidence 8998875 67778887543
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.8e-30 Score=250.39 Aligned_cols=164 Identities=25% Similarity=0.280 Sum_probs=135.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC---------cEEEECCeeCCCCCHHHHhcccEEEecCCCCCc
Q 006496 417 KGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK---------GVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA 487 (643)
Q Consensus 417 ~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~---------G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~ 487 (643)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|.++.. ...+.++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 468888887654 23467899999999988
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc----cCCCEEEeec
Q 006496 488 GTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL----KNPAVLLLDE 563 (643)
Q Consensus 488 gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll----~~~~IliLDE 563 (643)
|+. ...+++.++++. ++-.+..+ ..||||||||++||||+. ++|++++|||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~~~~----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKVQRL----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccccch----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 331 124566666655 22233333 469999999999999985 6779999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC
Q 006496 564 ATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 564 ~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
||++||+++...+.+.|++..++.|+|+|||+++.+..||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999998778999999999999999999999863
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=7e-29 Score=244.47 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=144.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEe-CCcEEEEEcCCCCCHHHHHHHHhc-cCCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIE-AKKSTALVGQSGSGKSTIIGLIER-FYDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~-~Ge~vaIvG~sGsGKSTL~~lL~g-l~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
.|+++|+. +|.+. ++++|+.. +|++++|+|++|||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 77432 56777654 589999999999999999999994 666666666554 2233444556677
Q ss_pred ccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccc-cccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 475 HIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEG-YDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 475 ~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~G-ldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
.|++++|++.-.- .+.++. ..+.++..+... ++.| +++.+...+.+||||||||++||||+.
T Consensus 77 ~v~~~f~~~~~~~----~~~r~~---gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLGGKKY----RVERSR---GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEECCeEE----EEEEec---CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 8999999984322 222222 345555544321 1222 455556677789999999999999997
Q ss_pred c----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 554 K----------NPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 554 ~----------~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
. +|+++||||||++||+.+...+.+.|.+..+ ++|+|+|||+++.+.. ||++++|++|-+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6789999999999999999999999988765 7899999999998755 799999998853
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.9e-28 Score=246.86 Aligned_cols=192 Identities=23% Similarity=0.264 Sum_probs=138.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc----------------CCCCCc-----
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF----------------YDPLKG----- 455 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl----------------~~~~~G----- 455 (643)
.|+++|. .+|.+ ..++++++ |++++|+||+|||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3666654 23542 24677776 899999999999999999999843 444445
Q ss_pred ---EEEECCeeCCC-C--CHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHH--Hhccccc
Q 006496 456 ---VVKIDGRDIRS-H--HLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFI--AGLYEGY 527 (643)
Q Consensus 456 ---~I~idG~di~~-~--~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I--~~lp~Gl 527 (643)
+|.+++.+-.. + ....++++++++||++.++. ..++.++++.+++.+++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555532110 1 12235566777777665422 235677888888887765321 0123332
Q ss_pred -------ccccCCCCCCCChhHHHHHHHHHHHc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q 006496 528 -------DTWCGDRGLQLSGGQKQRIAIARAVL----KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRL 596 (643)
Q Consensus 528 -------dt~vge~G~~LSgGQrQRiaLARAll----~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl 596 (643)
+....+.+.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.++.|+|+++|+.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 22345677899999999999999996 4689999999999999999999999999987778899999998
Q ss_pred chhhhcCEEEEEe
Q 006496 597 STIQNCDIIAVLE 609 (643)
Q Consensus 597 ~~i~~~D~I~vl~ 609 (643)
+..+.||+|++|+
T Consensus 222 ~~~~~~d~i~~l~ 234 (243)
T cd03272 222 ELLEVADKFYGVK 234 (243)
T ss_pred HHHhhCCEEEEEE
Confidence 8888899999986
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5e-28 Score=216.58 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=146.9
Q ss_pred EEEEeEEEECC----CCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC--C--eeCCCCCH
Q 006496 398 IELEDVHFAYP----ARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID--G--RDIRSHHL 469 (643)
Q Consensus 398 I~~~nvsf~Y~----~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id--G--~di~~~~~ 469 (643)
+..+|++.++. +.-.-|+++|+||+++.||++.+-||||||||||+++|-+-|.|++|+|.+. | .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 67778766652 1112479999999999999999999999999999999999999999999983 2 45555554
Q ss_pred HH---H-hcccEEEecCCCCCc-----ccHHHHH-hcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCC
Q 006496 470 RS---L-RRHIALVSQEPALFA-----GTIRENI-TYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLS 539 (643)
Q Consensus 470 ~~---l-r~~i~~v~Q~p~lf~-----gTireNi-~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LS 539 (643)
.+ . |+.||||+|---..+ +-+.|-+ ..|-+.+.-.++....+.+.++-+-+=+|| ...+|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 43 2 566999999432222 1233333 223211111223333444555544444443 35799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcCEEEEEe
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCDIIAVLE 609 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D~I~vl~ 609 (643)
||++||+.|||+++-|=|||+|||||++||+.+.+.+.+.|.+.. +++.+|=|=|+-+.=. -|||++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999998764 4677888999865433 389998775
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=276.08 Aligned_cols=216 Identities=24% Similarity=0.411 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCC-CHHHHhc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSH-HLRSLRR 474 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~-~~~~lr~ 474 (643)
..+..+|++..|+.... +.+++|+.+++||+.|+-|++||||||+++++.|...|++|++.++|.|+..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 35899999999976522 78999999999999999999999999999999999999999999999998764 4456999
Q ss_pred ccEEEecCCCCCcc-cHHHHHhcCC-CCCCCH----HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHH
Q 006496 475 HIALVSQEPALFAG-TIRENITYGA-SDKIDE----SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAI 548 (643)
Q Consensus 475 ~i~~v~Q~p~lf~g-TireNi~~g~-~~~~~~----e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaL 548 (643)
++||+||+..|++. |.||.+.+-. -..... +.+.+.|+.++|.+.. ++++ .++|||+|.||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~~----~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQV----RTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccch----hhCCCcchhhHHH
Confidence 99999999999976 9999997642 112222 3456677777776654 3333 4799999999999
Q ss_pred HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 006496 549 ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER-TSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 549 ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~-TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
|-|++.+|++++|||||+++||.+++.+.+.|.+..++. -+|+.||.++..+. |||+..|.+|++.-.|++++|..
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 999999999999999999999999999999999988765 99999999999875 99999999999999999999986
No 377
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.94 E-value=3.5e-23 Score=209.89 Aligned_cols=273 Identities=21% Similarity=0.367 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 76 SLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENM 155 (643)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 155 (643)
+++.++.++.+++.++.|++++.+++........ .......+..+++++.++.........+...+.+.++..++|.++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888899999999874332211 111122222233333344444445555556789999999999999
Q ss_pred HHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006496 156 LSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQPLVIVCL 235 (643)
Q Consensus 156 ~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~ 235 (643)
++|+++.|.++|+ ++++|++++|+++|++.+++.+...+..++..+..+++++++++.++|.++++.+++.|+.+++.
T Consensus 81 ~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 81 FEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999998 78999999999999999999999988889999999999999999999999999998889988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 236 YGKEVLLKSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCV 315 (643)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (643)
....+..++..++..+..++..+.+.|.++|+++||+|++|+++.+++++..++..+...+..+.......+..++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHH
Q 006496 316 VALAFWYGGRL-VGRGYIDGKSLFEIFLILVSTGKVI 351 (643)
Q Consensus 316 ~~~~~~~g~~l-v~~~~~~~g~~~~~~~~~~~~~~~~ 351 (643)
.++++++|+++ +..|.+++|.+++++.+...+..|+
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 88999999999 9999999999999888877766653
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.1e-26 Score=234.95 Aligned_cols=183 Identities=18% Similarity=0.267 Sum_probs=138.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCC-CcEEEECCe-eCCCCC-H-HHHhcccEEEecCCCC---------C-cccHH
Q 006496 426 KKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGR-DIRSHH-L-RSLRRHIALVSQEPAL---------F-AGTIR 491 (643)
Q Consensus 426 Ge~vaIvG~sGsGKSTL~~lL~gl~~~~-~G~I~idG~-di~~~~-~-~~lr~~i~~v~Q~p~l---------f-~gTir 491 (643)
...++||||||||||||+.+|.+++.+. .|++...|. |+-... . ..-+.++.+++|++.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999876 468888887 432111 1 1234589999999632 2 34788
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHhccH----HH------HHhcccccccccCCCCCCCChhHHHHHHHHHHHc-
Q 006496 492 ENITYGAS-------DKIDESEIIEAGKAANAH----DF------IAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL- 553 (643)
Q Consensus 492 eNi~~g~~-------~~~~~e~i~~al~~~~l~----~~------I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll- 553 (643)
+||..+.. .....+++.++++.+++. .| |..+=+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88765421 123457888889888874 00 1111000 01233445679999999999999997
Q ss_pred ---cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEe
Q 006496 554 ---KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLE 609 (643)
Q Consensus 554 ---~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~ 609 (643)
++|+++||||||++||+++...+.+.|++..++.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999998878889999999999999999998775
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.7e-26 Score=225.29 Aligned_cols=163 Identities=26% Similarity=0.289 Sum_probs=130.0
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHH----hccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCC-----CCCcc-
Q 006496 419 FSINIEAKKSTALVGQSGSGKSTIIGLI----ERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEP-----ALFAG- 488 (643)
Q Consensus 419 isl~i~~Ge~vaIvG~sGsGKSTL~~lL----~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p-----~lf~g- 488 (643)
.++++.+| +++|+||||||||||+.+| .|...|..|.+..+...+. ....+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567777 9999999999999999998 4988888887762222222 234567899999998 34332
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH------HHHHHHHccCCCEEEee
Q 006496 489 TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR------IAIARAVLKNPAVLLLD 562 (643)
Q Consensus 489 TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR------iaLARAll~~~~IliLD 562 (643)
|+.+|+.+++ ++++.+.+ .+....||+||+|| +|||||+..+|++++||
T Consensus 92 ~~~~~~~~~~-----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 92 AILENVIFCH-----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hHhhceeeec-----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 9999997652 33433332 34456899999996 79999999999999999
Q ss_pred ccCCCCCHHHHH-HHHHHHHHHcC--CceEEEEccCcchhhhcCEEEEEeC
Q 006496 563 EATSALDSQSEK-VVQEALERLMV--ERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 563 E~TSaLD~~te~-~i~~~i~~~~~--~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
|||++||+++.. .+.+.|++..+ ++|+|+|||+++.+..||+|++|++
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999999988 99999988765 6799999999999999999999965
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=8.5e-27 Score=243.17 Aligned_cols=198 Identities=29% Similarity=0.397 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.|.+.||+|.|++++ .++++++|-|.++++||+|||+|+|||||++++.|...|..|.|.-.-. .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 499999999998653 7899999999999999999999999999999999999999998865432 123
Q ss_pred EEEecC---CCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQE---PALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~---p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
++-.|. ---++.|.-||+.---++.-..|+++..+..++|....+..|- .+||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 444443 3345678888886442223567889999999999877665553 479999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEE-EcCh
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVE-EGSH 619 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive-~G~~ 619 (643)
+.|.||+|||||++||.++-....++|.++ ..+||+|+|....|.. +++|.+.+||.+.. .|.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999886 6789999999999966 99999999998854 3444
No 381
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=239.23 Aligned_cols=213 Identities=23% Similarity=0.368 Sum_probs=172.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHH-HHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLR-SLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~-~lr~~ 475 (643)
.++++|++..- .++|+||++++||.+||.|--|||+|=++.+|+|.-++.+|+|.+||+++.--++. ..+..
T Consensus 263 ~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 36788876431 37899999999999999999999999999999998889999999999998877765 78889
Q ss_pred cEEEecCCC---CC-cccHHHHHhcCCCCCCCHH-HHHHHHHHhccHHHHHhcc---cccccccCCCCCCCChhHHHHHH
Q 006496 476 IALVSQEPA---LF-AGTIRENITYGASDKIDES-EIIEAGKAANAHDFIAGLY---EGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 476 i~~v~Q~p~---lf-~gTireNi~~g~~~~~~~e-~i~~al~~~~l~~~I~~lp---~Gldt~vge~G~~LSgGQrQRia 547 (643)
|+|||-|-. || ..||++||.+........- -+...-+.....+++..|- .+.+.+++ +||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~----~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh----cCCchhhhhHH
Confidence 999997644 55 5699999987621111111 2344455555667777663 23445554 69999999999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQ 620 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 620 (643)
|||.|..+|+||||||||-++|.-+.+.|.+.|+++.+ ++++|+||-.+..+. .||||+||.+|+|+..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999998754 699999999998865 79999999999998744443
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=4e-27 Score=211.76 Aligned_cols=208 Identities=27% Similarity=0.390 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 006496 398 IELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA 477 (643)
Q Consensus 398 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~ 477 (643)
++++||+..- -|-.+|.++.+||.+=+|||+|||||||+..+.|+. |.+|+|.++|.|++.....++-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5677776532 267789999999999999999999999999999988 66999999999999999999999999
Q ss_pred EEecCC-CCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc--
Q 006496 478 LVSQEP-ALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK-- 554 (643)
Q Consensus 478 ~v~Q~p-~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~-- 554 (643)
|..|+. ..|...+..-+++..+...--+++.+++.+.+ ++..++..-..|||||.||+-||-.++.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~-----------l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhc-----------ccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998854 48888899999887432111234444444444 4444555557899999999999988875
Q ss_pred -----CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcc-hhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 555 -----NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLS-TIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 555 -----~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~-~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
..++||+|||.++||...+..+...|.+.. .+.|||+..|+|+ |++.||++..+..|++...|.-+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 258999999999999998888777776654 4799999999996 799999999999999999999999986
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=9.6e-26 Score=260.40 Aligned_cols=100 Identities=31% Similarity=0.480 Sum_probs=91.5
Q ss_pred cccc-ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh
Q 006496 526 GYDT-WCGDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ 600 (643)
Q Consensus 526 Gldt-~vge~G~~LSgGQrQRiaLARAll~~~---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~ 600 (643)
|++. .++.....||||||||++|||||+++| +++||||||++||+++...+.+.|+++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 367778899999999999999999999 9999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEEcChhHHhhc
Q 006496 601 NCDIIAVL------EQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 601 ~~D~I~vl------~~G~Ive~G~~~eLl~~ 625 (643)
.||+|++| ++|+|++.|+++++.++
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 99999999 79999999999999974
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.3e-26 Score=227.33 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=137.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHh-cc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLR-RH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr-~~ 475 (643)
.|+++|.- +|.+ ..+++++++ +.++|+||+||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 47788875 6743 357888887 899999999999999999997 3455443 2334 57
Q ss_pred cEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHH-----HHHHHH----hccHHHHHhcccccccccCCCCCCCChhHHHH
Q 006496 476 IALVSQEPALFAG-TIRENITYGASDKIDESEI-----IEAGKA----ANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR 545 (643)
Q Consensus 476 i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i-----~~al~~----~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 545 (643)
+++++|+..+++. |.++++.+... ....+.+ ...-.. .+-...+..||++.++.++ .||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHH
Confidence 9999999887765 67777665421 1110000 000000 0111123456777777654 699999999
Q ss_pred HHHHHHHc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC
Q 006496 546 IAIARAVL----KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 546 iaLARAll----~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
++||||+. ++|++++|||||++||+++...+.+.+++..++.|+|+|||+.+..+.||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999996 358999999999999999999999999998778899999999888889999999963
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=3e-25 Score=266.14 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=153.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHH---------HHhccCCCCCc--------EEEE
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIG---------LIERFYDPLKG--------VVKI 459 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~---------lL~gl~~~~~G--------~I~i 459 (643)
.++++|++. ..|+|+||+|++||.++|+|+||||||||++ .|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 488888862 2599999999999999999999999999999 45554322111 2455
Q ss_pred CCeeCCCCCH----------HHHhc---------cc-----EEEecC------------------C--------------
Q 006496 460 DGRDIRSHHL----------RSLRR---------HI-----ALVSQE------------------P-------------- 483 (643)
Q Consensus 460 dG~di~~~~~----------~~lr~---------~i-----~~v~Q~------------------p-------------- 483 (643)
|-.++..-+. +++|+ +. .+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5554443211 14441 11 122221 1
Q ss_pred ------CCCcc-cHHHHHhcCCCCCC-----CHHHHHHHHHHhccHHHHHhcccccccc-cCCCCCCCChhHHHHHHHHH
Q 006496 484 ------ALFAG-TIRENITYGASDKI-----DESEIIEAGKAANAHDFIAGLYEGYDTW-CGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 484 ------~lf~g-TireNi~~g~~~~~-----~~e~i~~al~~~~l~~~I~~lp~Gldt~-vge~G~~LSgGQrQRiaLAR 550 (643)
..+.+ ||.||+.++.. ++ +.+++.+.++ .++.+ |++.. .++...+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~-ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAY-EAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHH-HHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 13333 89999988731 11 1233333332 22222 56554 57777899999999999999
Q ss_pred HHc---cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEe------CCEEEEEcChh
Q 006496 551 AVL---KNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLE------QGRVVEEGSHQ 620 (643)
Q Consensus 551 All---~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~------~G~Ive~G~~~ 620 (643)
||+ ++|++|||||||++||+++.+.+.+.|+++. ++.|+|+|+|+++.++.||+|++|+ +|++++.|+++
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 998 5999999999999999999999999998865 4789999999999999999999996 79999999999
Q ss_pred HHhh
Q 006496 621 SLLA 624 (643)
Q Consensus 621 eLl~ 624 (643)
++..
T Consensus 903 el~~ 906 (1809)
T PRK00635 903 ELIH 906 (1809)
T ss_pred HHHh
Confidence 9985
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=7.7e-26 Score=258.13 Aligned_cols=199 Identities=27% Similarity=0.394 Sum_probs=170.2
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC--CCCcEEEECCeeCCCCCHHHHhcccEEEecCCC-CCcc
Q 006496 412 NVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD--PLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA-LFAG 488 (643)
Q Consensus 412 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~--~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~-lf~g 488 (643)
...+|+||+=-++||..+|+.|+||||||||+++|+|--. ..+|+|+|||.+..+ +..++.+|||.|++. +=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4578999999999999999999999999999999999754 368999999998765 789999999999665 5455
Q ss_pred cHHHHHhcCC----CCCCCHHH----HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 006496 489 TIRENITYGA----SDKIDESE----IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP-AVL 559 (643)
Q Consensus 489 TireNi~~g~----~~~~~~e~----i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~-~Il 559 (643)
||||-|.|.. +.+.+++| ++++++..+|.+.= |..||.-|..||..||.|+.||=-|..|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998862 33445433 56777777776653 45689888999999999999999999999 888
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcch--hhhcCEEEEEeC-CEEEEEcChh
Q 006496 560 LLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLST--IQNCDIIAVLEQ-GRVVEEGSHQ 620 (643)
Q Consensus 560 iLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~--i~~~D~I~vl~~-G~Ive~G~~~ 620 (643)
.||||||+||+.+...|.+.++++. .++|++..-|+++. .+.+|+++.|++ |+.|..|+..
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999999999999998864 58999999999986 578999999985 7899998853
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=3.4e-25 Score=223.29 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=135.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCee-------CCCCCHHHHhcccEEEecCCC--CCcccHHHHHh-c
Q 006496 427 KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRD-------IRSHHLRSLRRHIALVSQEPA--LFAGTIRENIT-Y 496 (643)
Q Consensus 427 e~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~d-------i~~~~~~~lr~~i~~v~Q~p~--lf~gTireNi~-~ 496 (643)
..++|+||+|||||||+.+|.+...+..|++..++.+ ....+.....-.+.+..|++. ++..+++++-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877887665421 111122234445666666543 44445544321 1
Q ss_pred C-CCCCCCHHHHHHHHHHhccHHHHHh--cccccccccCCCC---------CCCChhHHHHHHHHHHHcc----CCCEEE
Q 006496 497 G-ASDKIDESEIIEAGKAANAHDFIAG--LYEGYDTWCGDRG---------LQLSGGQKQRIAIARAVLK----NPAVLL 560 (643)
Q Consensus 497 g-~~~~~~~e~i~~al~~~~l~~~I~~--lp~Gldt~vge~G---------~~LSgGQrQRiaLARAll~----~~~Ili 560 (643)
. .....+.+++.+.++.++++.+... +|+|.-+.+.+.. .+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1234778899999999998643222 2444444443322 6799999999999999975 489999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEEeC
Q 006496 561 LDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 561 LDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
|||||++||+.+...+.+.|++..+ +.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998765 6899999999999999999999864
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.8e-24 Score=246.75 Aligned_cols=97 Identities=34% Similarity=0.512 Sum_probs=88.5
Q ss_pred cccc-ccCCCCCCCChhHHHHHHHHHHHcc---CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh
Q 006496 526 GYDT-WCGDRGLQLSGGQKQRIAIARAVLK---NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ 600 (643)
Q Consensus 526 Gldt-~vge~G~~LSgGQrQRiaLARAll~---~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~ 600 (643)
|++. .+++....|||||+||++|||||.+ +|+++||||||++||+++...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5554 3678888999999999999999997 599999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEEcChhHH
Q 006496 601 NCDIIAVL------EQGRVVEEGSHQSL 622 (643)
Q Consensus 601 ~~D~I~vl------~~G~Ive~G~~~eL 622 (643)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=8.5e-24 Score=220.10 Aligned_cols=214 Identities=25% Similarity=0.429 Sum_probs=175.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeC-CCCCHHHHhcc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDI-RSHHLRSLRRH 475 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di-~~~~~~~lr~~ 475 (643)
-++++|++..-+. ....+++|||++++||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ...++..+|+.
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4889999886532 24579999999999999999999999999999999999999999999999997 77788877665
Q ss_pred -cEEEecCCC----CCcccHHHHHhcCCCCC--------CCHHHHHHHHHHhccHHHHHhc---ccccccccCCCCCCCC
Q 006496 476 -IALVSQEPA----LFAGTIRENITYGASDK--------IDESEIIEAGKAANAHDFIAGL---YEGYDTWCGDRGLQLS 539 (643)
Q Consensus 476 -i~~v~Q~p~----lf~gTireNi~~g~~~~--------~~~e~i~~al~~~~l~~~I~~l---p~Gldt~vge~G~~LS 539 (643)
++|||.|.+ ..+-|+.||+.++.... .+..++.+..+ +.++.+ +.|-++++ .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~a----~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAPA----RSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcch----hhcC
Confidence 999999885 55679999999874211 22234433322 233332 34555554 4799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchh-hhcCEEEEEeCCEEEEEc
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTI-QNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i-~~~D~I~vl~~G~Ive~G 617 (643)
||+.||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.. +++.|++|+-.|+.+ .-||||.||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999998888886654 578999999999986 559999999999999888
Q ss_pred ChhH
Q 006496 618 SHQS 621 (643)
Q Consensus 618 ~~~e 621 (643)
.+++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=211.41 Aligned_cols=211 Identities=27% Similarity=0.380 Sum_probs=169.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.+++.+|+|.|+..+. +.+.++++.+..-+++++||+.|+||||+++++.+...|..|.+.+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 5999999999975533 789999999999999999999999999999999999999999988876 3568
Q ss_pred EEEecCCCCC-cccHH--HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPALF-AGTIR--ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~lf-~gTir--eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
+|-.|.-.=| +-.+- |=.. ...+.-++|+|++.|...|++..+..-| + ..||||||-|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~-~~~pG~~~ee~r~hl~~~Gl~g~la~~s------i----~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQS------I----ASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHH-HhCCCCCHHHHHHHHHhcCCCchhhhcc------c----cccCCcchhHHHHHHHhc
Confidence 8888866532 22221 1111 0123458999999999988876655432 1 359999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEEEEEcChhHHhhcCCCcHHH
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRVVEEGSHQSLLAKGPAGAYY 632 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~ 632 (643)
.+|.+|||||||..||.++-..+-++|... +.-||+|||..+.++. |+.+++.++|+|.. .+ ..-..|+
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~-------ie-g~~~~yK 568 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP-------IE-GGIDKYK 568 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe-------ee-ccHHHHH
Confidence 999999999999999999999999999876 4569999999999976 99999999999975 21 0112477
Q ss_pred HHHHhhcC
Q 006496 633 SLVSLQTT 640 (643)
Q Consensus 633 ~l~~~q~~ 640 (643)
++...|.+
T Consensus 569 kl~~~e~~ 576 (582)
T KOG0062|consen 569 KLLGAELR 576 (582)
T ss_pred HHHHHHHh
Confidence 77666543
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=9.8e-23 Score=197.82 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=117.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCe---eCCCCCHHHHhcccEEEecCCCCCcccHHH
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGR---DIRSHHLRSLRRHIALVSQEPALFAGTIRE 492 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~---di~~~~~~~lr~~i~~v~Q~p~lf~gTire 492 (643)
++++++++.+| ..+|+||+|||||||+.+|.-.+..... ..-.|. ++-..+ .-...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----
Confidence 46677777776 7799999999999999998744322211 011122 111111 11455778888776554
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH----ccCCCEEEeeccCCCC
Q 006496 493 NITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV----LKNPAVLLLDEATSAL 568 (643)
Q Consensus 493 Ni~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl----l~~~~IliLDE~TSaL 568 (643)
| .....+.+++. ++++. ..-.+. ...+||||||||++||||+ +.+|+++||||||+++
T Consensus 83 ~----~~~~~~~~~~~---------~~l~~-~~~~~~----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 83 N----PLCVLSQDMAR---------SFLTS-NKAAVR----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred C----cCCHHHHHHHH---------HHhcc-ccccCC----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 2 11111222333 33333 222333 3457999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHcC----CceEEEEccCcchhhhcCEEEEEeCC
Q 006496 569 DSQSEKVVQEALERLMV----ERTSVVVAHRLSTIQNCDIIAVLEQG 611 (643)
Q Consensus 569 D~~te~~i~~~i~~~~~----~~TvI~ItHrl~~i~~~D~I~vl~~G 611 (643)
|..+...+.+.|++..+ .+|+|++||+++.+.++|+|-+|..|
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 99999999999887643 25899999999999999999999864
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=8.4e-23 Score=212.31 Aligned_cols=203 Identities=24% Similarity=0.320 Sum_probs=146.2
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 395 IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 395 ~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
..+|..+|.+.+|.++ .+|++-++++..|.++|+|||+|+|||||+++|.. |.|.+-.+ . +++|-
T Consensus 78 ~~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~v--e----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHV--E----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCc--h----hheec
Confidence 3479999999999743 68999999999999999999999999999999988 33322111 0 00000
Q ss_pred ccEEEecCCCCCcccHHHHHhcCC---CCCCCHHHHHH-HHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHH
Q 006496 475 HIALVSQEPALFAGTIRENITYGA---SDKIDESEIIE-AGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIAR 550 (643)
Q Consensus 475 ~i~~v~Q~p~lf~gTireNi~~g~---~~~~~~e~i~~-al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLAR 550 (643)
--...-| ..+-.+|-|.-+..-. ....+-+++.. +|.-.+..+..+..|- ..||||-|-|+||||
T Consensus 143 ~~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHH
Confidence 0000001 1122333333332210 00113455555 7777777777666663 369999999999999
Q ss_pred HHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-cCEEEEEeCCEE-EEEcChhHHhhc
Q 006496 551 AVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN-CDIIAVLEQGRV-VEEGSHQSLLAK 625 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~-~D~I~vl~~G~I-ve~G~~~eLl~~ 625 (643)
|++.+||||+|||||..||..+-.-+.+-|.++ ..|+|+|+|.-+.+-. |.-|+-+++-++ ...|++++..+.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999998888876 3899999999988854 788888888776 467888887763
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.6e-22 Score=201.12 Aligned_cols=191 Identities=29% Similarity=0.394 Sum_probs=148.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
-+-+.||+|.||.. .|.+++++|-|.--..||||||+|.|||||+++|.|-++|+.|+.+=+- |-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 36789999999864 4689999999999999999999999999999999999999999865433 3458
Q ss_pred EEEecCCC-CC--cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 477 ALVSQEPA-LF--AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 477 ~~v~Q~p~-lf--~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
|+--|+.- -+ ..|-.|-+.-+ ...+-++-+++|-..+|...-. |. .-..||||||.|+++|---+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sHAH-------Ti---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASHAH-------TI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhccc-------eE---eeeecCCcchHHHHHHHHhc
Confidence 88777543 12 23556666544 1355666677776666543322 21 12469999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcC-EEEEEeCCEEE
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCD-IIAVLEQGRVV 614 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D-~I~vl~~G~Iv 614 (643)
+.|+||||||||.+||.++-..+-++|.+. +..||+|+|.-..|..-| ..+|+++-.|-
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~ 780 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGID 780 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChh
Confidence 999999999999999999999999999886 457999999988876544 34556655453
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2e-21 Score=203.27 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=144.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRH 475 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~ 475 (643)
..|.++|+++.|+. ...++|.+|++.+|+++||+|++||||||+++++.|--.|..-.+-+-=. -+++.+..+..
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~a- 148 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQA- 148 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHHH-
Confidence 46999999999974 35799999999999999999999999999999999988885544322100 00111111100
Q ss_pred cEEEecCCCCCcccH-------HHHHhcCCCCCCCH---HHHHHHHHHhccHHHHH----hcc-cccccc-cCCCCCCCC
Q 006496 476 IALVSQEPALFAGTI-------RENITYGASDKIDE---SEIIEAGKAANAHDFIA----GLY-EGYDTW-CGDRGLQLS 539 (643)
Q Consensus 476 i~~v~Q~p~lf~gTi-------reNi~~g~~~~~~~---e~i~~al~~~~l~~~I~----~lp-~Gldt~-vge~G~~LS 539 (643)
+ |.-+-+..+- .|++.-.. ++.+. +.+++-+...+.+.+=. -|+ .|.... ....-.+||
T Consensus 149 v----~~v~~~~~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 149 V----QAVVMETDHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred H----HHHhhhhHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0 0000011111 12222110 01111 11222222222221111 011 132222 223446899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCcchhhh-cCEEEEEeCCE-EEEE
Q 006496 540 GGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVER-TSVVVAHRLSTIQN-CDIIAVLEQGR-VVEE 616 (643)
Q Consensus 540 gGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~-TvI~ItHrl~~i~~-~D~I~vl~~G~-Ive~ 616 (643)
||||-|++|||||+.+|++|+|||||.+||.++-.-+.+-|.+. ++ |+++++|.-.++.. |..|+-|++++ +...
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 99999999999999999999999999999999999998888775 44 89999999999965 99999999999 7788
Q ss_pred cChhHHhh
Q 006496 617 GSHQSLLA 624 (643)
Q Consensus 617 G~~~eLl~ 624 (643)
|+|++.+.
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 89998875
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=2e-21 Score=185.18 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=78.6
Q ss_pred HHhcccccccccCCCCCCCChhHHHHHHHHHHHc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEEcc
Q 006496 520 IAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL----KNPAVLLLDEATSALDSQSEKVVQEALERLMVE-RTSVVVAH 594 (643)
Q Consensus 520 I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll----~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~-~TvI~ItH 594 (643)
+..+|+|..|++ ||||||||++||||+. ++|+++|+||||++||+.....+.+.+.+..+. +|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 667899999998 9999999999999984 799999999999999999999999999887554 89999999
Q ss_pred CcchhhhcCEEEEEeC
Q 006496 595 RLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 595 rl~~i~~~D~I~vl~~ 610 (643)
+++.+..+|+++.+..
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=3.6e-21 Score=197.10 Aligned_cols=182 Identities=27% Similarity=0.444 Sum_probs=135.2
Q ss_pred eEEEECCCCCCccceeeeeEEEe-----CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 402 DVHFAYPARPNVMIFKGFSINIE-----AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 402 nvsf~Y~~~~~~~vL~~isl~i~-----~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
+--+.|++- ...+.+..|++. .||.++++||+|-||||++++|+|.++|++|+ ..++ ++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334455432 123556666655 57899999999999999999999999999998 2222 38
Q ss_pred EEEecCCC-CCcccHHHHHhcCCCCCCCHHHHH-HHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc
Q 006496 477 ALVSQEPA-LFAGTIRENITYGASDKIDESEII-EAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK 554 (643)
Q Consensus 477 ~~v~Q~p~-lf~gTireNi~~g~~~~~~~e~i~-~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~ 554 (643)
+|=||--. -|+||+++=+.-.....+.+..++ ++++--++++.+ |.+| .+||||+-||+|||-||.|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-------e~~v----~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-------ERPV----DELSGGELQRVAIAAALSR 472 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHH-------hccc----ccCCchhHHHHHHHHHhcc
Confidence 99999432 389999988754321113333332 234444444432 3333 4699999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhhh-cCEEEEEeC
Q 006496 555 NPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQN-CDIIAVLEQ 610 (643)
Q Consensus 555 ~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~~-~D~I~vl~~ 610 (643)
++|+++||||++.||.+..-.+-++|++.. .++|.++|-|++..+-. +||++|.+.
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999998888888887754 46899999999998865 899999963
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.85 E-value=7.2e-22 Score=196.82 Aligned_cols=197 Identities=20% Similarity=0.255 Sum_probs=139.0
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc--EEEECCeeCCCCCHHHHhccc--EEEecCCCCCcccHHHHHhc
Q 006496 421 INIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG--VVKIDGRDIRSHHLRSLRRHI--ALVSQEPALFAGTIRENITY 496 (643)
Q Consensus 421 l~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G--~I~idG~di~~~~~~~lr~~i--~~v~Q~p~lf~gTireNi~~ 496 (643)
+.+.+||+++|+|++|+|||||++.+.+.++...+ .+.+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 57889999999999999999999999999877643 333333322334555555554 1111100 0011111100
Q ss_pred CCCCCCCHHHHHHHHH---Hhc-----cHHHHHhcccccccccCCCCCCCChhH--------HHHHHHHHHHccCCCEEE
Q 006496 497 GASDKIDESEIIEAGK---AAN-----AHDFIAGLYEGYDTWCGDRGLQLSGGQ--------KQRIAIARAVLKNPAVLL 560 (643)
Q Consensus 497 g~~~~~~~e~i~~al~---~~~-----l~~~I~~lp~Gldt~vge~G~~LSgGQ--------rQRiaLARAll~~~~Ili 560 (643)
. ..+.+.++ ..+ +-|-+.++|.++++.+++.|.++|||| +||+++||+++++++|.+
T Consensus 88 ~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 88 A-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred H-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0 01111111 111 224567899999999999999999999 999999999999999999
Q ss_pred eeccCCCCCHHHHHH-HHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhhcCCCcHHHHHHHhh
Q 006496 561 LDEATSALDSQSEKV-VQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLAKGPAGAYYSLVSLQ 638 (643)
Q Consensus 561 LDE~TSaLD~~te~~-i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~~~g~y~~l~~~q 638 (643)
| ||+++|+.++.. ++ +.+.. ..+|.|+++||+.+..++|.|.||+.|++ |++++. .++.|+.+++.+
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~--~~~~~~~~~~~r 229 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLL--DPEELQRMWLLR 229 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhC--CHHHHHHHHHHH
Confidence 9 999999866653 33 33333 57999999999999999999999999997 788887 567888776543
No 398
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.9e-20 Score=188.11 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 537 QLSGGQKQRIAIARAVLK----NPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~----~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998888899999999999889999999999874
Q ss_pred E
Q 006496 613 V 613 (643)
Q Consensus 613 I 613 (643)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.3e-20 Score=182.00 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=113.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCC---CCcc---c-
Q 006496 417 KGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA---LFAG---T- 489 (643)
Q Consensus 417 ~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~---lf~g---T- 489 (643)
+++.+++.+| ..+|+|++|||||||+.+|.-..-..... .+. .-...++.+ .=.++.. -|.. .
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~r---~~~~~~~i~---~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LGR---AKKVGEFVK---RGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---ccc---ccCHHHHhh---CCCCcEEEEEEEEeCCCcc
Confidence 4455555443 55899999999999999876554211110 000 001111100 0011111 0111 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHH----HccCCCEEEeeccC
Q 006496 490 IRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARA----VLKNPAVLLLDEAT 565 (643)
Q Consensus 490 ireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARA----ll~~~~IliLDE~T 565 (643)
..+|+++- .+.+++.+....... |.+..+|.+.+.. ......||||||||+++|++ ++.+|+++|+||||
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 23444321 245566666655444 5556777665532 44567899999999887754 46899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---ceEEEEccCcchh-hhcC--EEEEEeCCE
Q 006496 566 SALDSQSEKVVQEALERLMVE---RTSVVVAHRLSTI-QNCD--IIAVLEQGR 612 (643)
Q Consensus 566 SaLD~~te~~i~~~i~~~~~~---~TvI~ItHrl~~i-~~~D--~I~vl~~G~ 612 (643)
++||+.+.+.+.+.|.+..++ .|+|+|||++..+ ..|| +|++|.+|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999887543 4799999998554 4455 788888775
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=4.9e-20 Score=211.07 Aligned_cols=207 Identities=26% Similarity=0.387 Sum_probs=170.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC---CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc-
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP---LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG- 488 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~---~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g- 488 (643)
..+|+|++.-++||+.+-+.||.|||||||+++|.|-.+- ..|+|.+||.|.+++.. ++.++|++|+..-|.-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3689999999999999999999999999999999998764 35699999999999887 8889999999888865
Q ss_pred cHHHHHhcCCC---C-----CCCHHHHHHHHHHhccHHHHHhcccccccccCCCC-CCCChhHHHHHHHHHHHccCCCEE
Q 006496 489 TIRENITYGAS---D-----KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRG-LQLSGGQKQRIAIARAVLKNPAVL 559 (643)
Q Consensus 489 TireNi~~g~~---~-----~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G-~~LSgGQrQRiaLARAll~~~~Il 559 (643)
|+||-|.|... + +.+..|..++....-+ -+-+|....||.||.+. ...|||||.|+++|-++..+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 99999988521 1 2333333221111111 12256678999999754 479999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcc--hhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 560 LLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLS--TIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 560 iLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~--~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
.+||+|-+||+.|.-+|.++|++.. -+.|.++.-|+.+ +..-.|+|++|.+|+++.+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999998764 3678888878754 577899999999999999999988875
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.3e-19 Score=167.88 Aligned_cols=209 Identities=26% Similarity=0.339 Sum_probs=166.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC----CCCcEEEECCeeCCCCCHHHHhcc----cEEEecCCC
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD----PLKGVVKIDGRDIRSHHLRSLRRH----IALVSQEPA 484 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~----~~~G~I~idG~di~~~~~~~lr~~----i~~v~Q~p~ 484 (643)
..+.+++|++...||.-|+||.||||||-+.+++.|..+ .+..+.++|++|+-++++..-|+- |+.++|+|.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 457899999999999999999999999999999999874 355677889999999999887764 678999997
Q ss_pred CCcc---c----HHHHHhcCCC-------CCCCHHHHHHHHHHhccHHH--H-HhcccccccccCCCCCCCChhHHHHHH
Q 006496 485 LFAG---T----IRENITYGAS-------DKIDESEIIEAGKAANAHDF--I-AGLYEGYDTWCGDRGLQLSGGQKQRIA 547 (643)
Q Consensus 485 lf~g---T----ireNi~~g~~-------~~~~~e~i~~al~~~~l~~~--I-~~lp~Gldt~vge~G~~LSgGQrQRia 547 (643)
-.-+ + +-+||-.... ......+-.+.|.++|+.|- | .+-| ..|--|+-|++-
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-----------~ElTeGE~QKVM 168 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-----------YELTEGECQKVM 168 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-----------chhccCcceeee
Confidence 5422 2 4466643211 01123456677888888653 2 2333 246678889999
Q ss_pred HHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEEccCcchhh-hcCEEEEEeCCEEEEEcChhHHhh
Q 006496 548 IARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV--ERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
||-|+..+|++||-||||.++|+.|..+|.+.+...-+ +-|+++++|++.++. .||+|-||-=|+-+|.+.-++|++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 99999999999999999999999999999998876543 568899999999985 699999999999999999999998
Q ss_pred cCCCcHHHH
Q 006496 625 KGPAGAYYS 633 (643)
Q Consensus 625 ~~~~g~y~~ 633 (643)
. +.-.|.+
T Consensus 249 ~-PhHPYTq 256 (330)
T COG4170 249 M-PHHPYTQ 256 (330)
T ss_pred C-CCCchHH
Confidence 6 5555654
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=4e-19 Score=180.08 Aligned_cols=198 Identities=27% Similarity=0.406 Sum_probs=151.4
Q ss_pred ccccEEEEeEEEECCCC-----------------------CCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc-
Q 006496 394 IIGHIELEDVHFAYPAR-----------------------PNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF- 449 (643)
Q Consensus 394 ~~~~I~~~nvsf~Y~~~-----------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl- 449 (643)
..+.+.|+|++-.|.+. -+..+|+|+||+|+||+.++|||+|||||||++.+++|.
T Consensus 354 L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 354 LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34568888888776321 023579999999999999999999999999999999985
Q ss_pred -------CCCCCcEEEECCeeCCCCCHHHHhcccEEEec--CCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHH
Q 006496 450 -------YDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQ--EPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFI 520 (643)
Q Consensus 450 -------~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q--~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I 520 (643)
|.|++|.|.+--..++. .+|- ||.+=.-||-|-+.=. .-|...-.++|+.+++.|-+
T Consensus 434 ~~~~ee~y~p~sg~v~vp~nt~~a-----------~iPge~Ep~f~~~tilehl~s~---tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 434 KGRGEEKYRPDSGKVEVPKNTVSA-----------LIPGEYEPEFGEVTILEHLRSK---TGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hcccccccCCCCCceeccccchhh-----------ccCcccccccCchhHHHHHhhc---cCchhHHHHHHHhhccchhh
Confidence 68999999875443332 2332 4444344888887311 12223345678888887765
Q ss_pred HhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcch
Q 006496 521 AGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLST 598 (643)
Q Consensus 521 ~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~ 598 (643)
. +-... ..||-|||-|..||+++-.+|.+++.||.-|.||+.|...+-+.|.++. .+-|.++||||.+.
T Consensus 500 l-----yRr~f----~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 L-----YRRKF----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred h-----hhccH----hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 3 22222 3599999999999999999999999999999999999999999998877 57899999999998
Q ss_pred hhh--cCEEEEEeCCEEE
Q 006496 599 IQN--CDIIAVLEQGRVV 614 (643)
Q Consensus 599 i~~--~D~I~vl~~G~Iv 614 (643)
+.. -|+++.+.=|...
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 764 5898888766543
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.80 E-value=1.2e-19 Score=177.04 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=107.1
Q ss_pred eeeeeEEEeCCc-EEEEEcCCCCCHHHHHHHHh--------ccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCC
Q 006496 416 FKGFSINIEAKK-STALVGQSGSGKSTIIGLIE--------RFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALF 486 (643)
Q Consensus 416 L~~isl~i~~Ge-~vaIvG~sGsGKSTL~~lL~--------gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf 486 (643)
..++||++.+|+ .++|+||+|||||||++.+. |.+-|....+ .++|.+|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 59999999999999999988 5554432111 1333333211
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCC
Q 006496 487 AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATS 566 (643)
Q Consensus 487 ~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TS 566 (643)
.++ .+..+.++-..+|+|+||+..+++++ .+|+++++||||+
T Consensus 78 --------~lg-----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 --------DIG-----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred --------ecC-----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 011 11112222247999999999999985 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEc
Q 006496 567 ALDSQSEKVVQ-EALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEG 617 (643)
Q Consensus 567 aLD~~te~~i~-~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G 617 (643)
++|+++...+. ..++.+. .++|+|++||.......||++++|++|+++..+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999887664 4555543 368999999997777889999999999997663
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=8.7e-19 Score=162.14 Aligned_cols=210 Identities=25% Similarity=0.314 Sum_probs=153.8
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCC-CCH----
Q 006496 395 IGHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRS-HHL---- 469 (643)
Q Consensus 395 ~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~-~~~---- 469 (643)
+..|++.++.|+|+... |++-|+|+++|+|....+||.+|||||||+++|.|---.-.|.|.+.|.+-=. -.+
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 35799999999998652 78999999999999999999999999999999999887778999999986322 111
Q ss_pred ------HHHhcccEEEecCCCCCcc-cHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 470 ------RSLRRHIALVSQEPALFAG-TIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 470 ------~~lr~~i~~v~Q~p~lf~g-TireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
.+|++..++-. |..|.-+ |. +-+.+|- ...+.++=.+. |. =+|-.+.=+-..+|-||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV-~g~dp~Rre~L---------I~----iLDIdl~WRmHkvSDGq 152 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGV-GGDDPERREKL---------ID----ILDIDLRWRMHKVSDGQ 152 (291)
T ss_pred ceeEecccccccccccc-cccccccccH-HHHHhhc-cCCChhHhhhh---------hh----heeccceEEEeeccccc
Confidence 12444444333 2222211 22 3333442 12222221111 11 12333333446799999
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEEccCcchhh-hcCEEEEEeCCEEEEEcCh
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM--VERTSVVVAHRLSTIQ-NCDIIAVLEQGRVVEEGSH 619 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~ItHrl~~i~-~~D~I~vl~~G~Ive~G~~ 619 (643)
|.|+-|+-.|++.=++|+|||.|--||......+.+-+++.. .++|++..||=..-+. ...+++.|.+|+++..-.+
T Consensus 153 rRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 153 RRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKY 232 (291)
T ss_pred hhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeecccc
Confidence 999999999999999999999999999999998888887654 4789999999998875 5899999999999984444
Q ss_pred hHH
Q 006496 620 QSL 622 (643)
Q Consensus 620 ~eL 622 (643)
++.
T Consensus 233 ~~i 235 (291)
T KOG2355|consen 233 QKI 235 (291)
T ss_pred chh
Confidence 433
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=6.2e-19 Score=192.44 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=87.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEE
Q 006496 530 WCGDRGLQLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDII 605 (643)
Q Consensus 530 ~vge~G~~LSgGQrQRiaLARAll~~~---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I 605 (643)
.+|+....|||||.|||-||.-|.+++ -++||||||.+|-.+--+++++.|.++- ++.|||+|-|.|+.|+.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468889999999999999999999998 9999999999999988888888887764 579999999999999999999
Q ss_pred EEE------eCCEEEEEcChhHHhhc
Q 006496 606 AVL------EQGRVVEEGSHQSLLAK 625 (643)
Q Consensus 606 ~vl------~~G~Ive~G~~~eLl~~ 625 (643)
+-| +.|+|+..|||+|+.+.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhC
Confidence 998 46899999999999973
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=9.2e-19 Score=210.81 Aligned_cols=213 Identities=21% Similarity=0.277 Sum_probs=143.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHh------cc---CCCCCcEEEECCeeCCCCCH----------HHHhccc
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIE------RF---YDPLKGVVKIDGRDIRSHHL----------RSLRRHI 476 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~------gl---~~~~~G~I~idG~di~~~~~----------~~lr~~i 476 (643)
|+|++.+||-|..++|.|.||||||||++-.+ .+ .+..+--|.||-.+|..-+. +.+|+-+
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999997444 11 13334457788777665443 2345555
Q ss_pred EEEec------CCCCCc--------------ccHHHHHhcCCC----------CCCCHHH-----------------HHH
Q 006496 477 ALVSQ------EPALFA--------------GTIRENITYGAS----------DKIDESE-----------------IIE 509 (643)
Q Consensus 477 ~~v~Q------~p~lf~--------------gTireNi~~g~~----------~~~~~e~-----------------i~~ 509 (643)
+-.|+ .|-.|+ |.|+-++.|-++ ..+.+|- +.+
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 43222 111221 111111111100 0011110 111
Q ss_pred HHHHh----ccH---HHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC---CCEEEeeccCCCCCHHHHHHHHHH
Q 006496 510 AGKAA----NAH---DFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN---PAVLLLDEATSALDSQSEKVVQEA 579 (643)
Q Consensus 510 al~~~----~l~---~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~---~~IliLDE~TSaLD~~te~~i~~~ 579 (643)
|++-- .+. +.+..+--||-+ +|+.-..|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.+.
T Consensus 1666 a~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1666 VAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 21111 011 112222224443 6888999999999999999999976 789999999999999988888888
Q ss_pred HHHHc-CCceEEEEccCcchhhhcCEEEEEe------CCEEEEEcChhHHhhcCCCcH
Q 006496 580 LERLM-VERTSVVVAHRLSTIQNCDIIAVLE------QGRVVEEGSHQSLLAKGPAGA 630 (643)
Q Consensus 580 i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~------~G~Ive~G~~~eLl~~~~~g~ 630 (643)
++++. ++.|||+|-|++..++.||.|+-|. .|+|+..|||+++.++ +++.
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~-~~S~ 1801 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS-KDSL 1801 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC-CCCc
Confidence 88764 5799999999999999999999984 5899999999999974 4443
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.5e-18 Score=163.39 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=99.0
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE-EEecCCCCCcccHHHHHhcCC
Q 006496 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA-LVSQEPALFAGTIRENITYGA 498 (643)
Q Consensus 420 sl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~-~v~Q~p~lf~gTireNi~~g~ 498 (643)
+..+.++..+.|+||+||||||+++++.-..-..+|.+.... +. +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455679999999999999999997665545555433310 00 011 111111111
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc----CCCEEEeeccCCCCCHHHHH
Q 006496 499 SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK----NPAVLLLDEATSALDSQSEK 574 (643)
Q Consensus 499 ~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~----~~~IliLDE~TSaLD~~te~ 574 (643)
.-+. .+||+||+||++|||++.. +|+++|||||++++|++...
T Consensus 72 ----------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 ----------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ----------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 0010 1199999999999999986 78999999999999999999
Q ss_pred HHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEEeC
Q 006496 575 VVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 575 ~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
.+.+.+.+..+ ++|+|++||+++....+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99888887654 4899999999999999999999964
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.9e-17 Score=167.65 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=119.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC---------------------------------------CCc-
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP---------------------------------------LKG- 455 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~---------------------------------------~~G- 455 (643)
+++.++++.+| ..+|+|++||||||++.+|.-+... .+|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 45567777776 5889999999999999875432210 012
Q ss_pred -EEEECCeeCCC-CCHHHHhcccEEEecCCCCCcccHHHHHhcCCC--CCCCH------HHHHHHHHHhccHHHHHhccc
Q 006496 456 -VVKIDGRDIRS-HHLRSLRRHIALVSQEPALFAGTIRENITYGAS--DKIDE------SEIIEAGKAANAHDFIAGLYE 525 (643)
Q Consensus 456 -~I~idG~di~~-~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~--~~~~~------e~i~~al~~~~l~~~I~~lp~ 525 (643)
.+.+||..++. -+...+-..+.+.|++..|+.++-.+-..|-.. ..... +++.++++.-+ +. .+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~--~~-~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRN--AL-LKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HH-hCCCC
Confidence 45577877765 222233444677778788885543322222100 01111 12222222211 11 11355
Q ss_pred ccccccCCCCC----CCChhHHHHHHHHHHH---------ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q 006496 526 GYDTWCGDRGL----QLSGGQKQRIAIARAV---------LKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVV 592 (643)
Q Consensus 526 Gldt~vge~G~----~LSgGQrQRiaLARAl---------l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~I 592 (643)
..+..+.-++. -+|+||+|+++|||++ +++|+++||||||++||+.....+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 55544433332 4899999999999997 48999999999999999999999999987642 45555
Q ss_pred ccCcchhhh-c---CEEEEEeCCEE
Q 006496 593 AHRLSTIQN-C---DIIAVLEQGRV 613 (643)
Q Consensus 593 tHrl~~i~~-~---D~I~vl~~G~I 613 (643)
+|+...+.+ | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 555544433 4 78999999986
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=7.9e-18 Score=166.13 Aligned_cols=152 Identities=17% Similarity=0.131 Sum_probs=111.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE-EEecCCCCCcccHH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA-LVSQEPALFAGTIR 491 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~-~v~Q~p~lf~gTir 491 (643)
..+.+|+++++++|+.++|+||+||||||+++.+.- -.+..+++ +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 357899999999999999999999999999999871 13334455 6666542111 11
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecc---CC
Q 006496 492 ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV--LKNPAVLLLDEA---TS 566 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl--l~~~~IliLDE~---TS 566 (643)
+. ++...++.+. . ..++|.|++|+..+|+++ +.+|+++||||| |+
T Consensus 74 ~~----------------il~~~~l~d~-----------~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 74 DC----------------ILARVGASDS-----------Q---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred ce----------------eEeeeccccc-----------h---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 11 1122222211 1 246999999999999999 899999999999 99
Q ss_pred CCCHHHHH-HHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 567 ALDSQSEK-VVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 567 aLD~~te~-~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
++|+.... .+.+.+.+ ..++|+|++||..+....||++..+++|++...++
T Consensus 124 ~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 99997665 33355543 24789999999655556699999999999987664
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=5.5e-18 Score=144.79 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=71.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHH
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIREN 493 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireN 493 (643)
++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5799999999999999999999999999999986 89999999999999999999999999998 999999999
Q ss_pred Hhc
Q 006496 494 ITY 496 (643)
Q Consensus 494 i~~ 496 (643)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 986
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=170.31 Aligned_cols=186 Identities=24% Similarity=0.336 Sum_probs=127.4
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCee-----CCCCCHHHHh---
Q 006496 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRD-----IRSHHLRSLR--- 473 (643)
Q Consensus 402 nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~d-----i~~~~~~~lr--- 473 (643)
++.-+|..+ .-.|.++- ..++|+.+||+|++|-||||-++.|.|.+.|.=|+- ++-+ ++.+.-.+|.
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 466788532 12233322 345799999999999999999999999999987752 2210 1111111111
Q ss_pred -----------cccEEEecCCCCCcccHHHHHhcCCCCCCCH-HHHHHHHHHhccHHHHHhcccccccccCCCCCCCChh
Q 006496 474 -----------RHIALVSQEPALFAGTIRENITYGASDKIDE-SEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGG 541 (643)
Q Consensus 474 -----------~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~-e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgG 541 (643)
.++-||.-=|-.+.|+++|=+.-- ++ -...++.+..+| +-.+...-..||||
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~-----de~g~~devve~l~L-----------~nvl~r~v~~LSGG 217 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV-----DERGKFDEVVERLGL-----------ENVLDRDVSELSGG 217 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh-----hhcCcHHHHHHHhcc-----------hhhhhhhhhhcCch
Confidence 112233334556667777666321 11 123334444444 33444445679999
Q ss_pred HHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEE
Q 006496 542 QKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVL 608 (643)
Q Consensus 542 QrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl 608 (643)
+-||+|||-|++|+++++++|||||-||....-.+-+.|+++.+ +++||+|-|+|..+-. +|-|-++
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE
Confidence 99999999999999999999999999999888888888888887 6999999999998864 7877766
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.70 E-value=4.8e-17 Score=188.58 Aligned_cols=99 Identities=29% Similarity=0.422 Sum_probs=88.6
Q ss_pred ccccc-cCCCCCCCChhHHHHHHHHHHHccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh
Q 006496 526 GYDTW-CGDRGLQLSGGQKQRIAIARAVLKNP--AVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN 601 (643)
Q Consensus 526 Gldt~-vge~G~~LSgGQrQRiaLARAll~~~--~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~ 601 (643)
|++.. .+..-.+||||||||++|||||..+| ++|||||||++||++..+.+.+.|+++.+ +.|||+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45432 45556689999999999999999997 99999999999999999999999988754 7899999999999999
Q ss_pred cCEEEEE------eCCEEEEEcChhHHhh
Q 006496 602 CDIIAVL------EQGRVVEEGSHQSLLA 624 (643)
Q Consensus 602 ~D~I~vl------~~G~Ive~G~~~eLl~ 624 (643)
||+|++| ++|+|+..|++++++.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999 9999999999999975
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=8.1e-17 Score=186.38 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=88.5
Q ss_pred ccccc-cCCCCCCCChhHHHHHHHHHHHccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh
Q 006496 526 GYDTW-CGDRGLQLSGGQKQRIAIARAVLKNP--AVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN 601 (643)
Q Consensus 526 Gldt~-vge~G~~LSgGQrQRiaLARAll~~~--~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~ 601 (643)
|++.. .+.....|||||+||++|||||..+| ++|||||||++||++..+.+.+.|+++.+ +.|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44432 45666789999999999999999986 89999999999999999999999988744 6899999999999999
Q ss_pred cCEEEEE------eCCEEEEEcChhHHhh
Q 006496 602 CDIIAVL------EQGRVVEEGSHQSLLA 624 (643)
Q Consensus 602 ~D~I~vl------~~G~Ive~G~~~eLl~ 624 (643)
||+|++| ++|+|++.|+++++..
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999 9999999999999865
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.68 E-value=5.2e-17 Score=157.67 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=95.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc-ccHHH
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA-GTIRE 492 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~-gTire 492 (643)
++++|++++. |+.++|+||||||||||++++.+..- +..+|.++... .++.|...+|. -|++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4778776654 79999999999999999999987543 22356655321 35667555665 49999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHH
Q 006496 493 NITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS 572 (643)
Q Consensus 493 Ni~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~t 572 (643)
|+.++. . ...++.. .+.+.++.+. .++|+++|+||||+++|+.+
T Consensus 79 ~l~~~~-s-~~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 79 DLRDGI-S-YFYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred cccccc-C-hHHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHH
Confidence 998873 1 2222221 1223333321 07999999999999999987
Q ss_pred HHHHHH-HHHHHc-CCceEEEEccCcchhhhc---CEEEEE
Q 006496 573 EKVVQE-ALERLM-VERTSVVVAHRLSTIQNC---DIIAVL 608 (643)
Q Consensus 573 e~~i~~-~i~~~~-~~~TvI~ItHrl~~i~~~---D~I~vl 608 (643)
...+.. .++... ++.|+|++||+++.+... ++|-.+
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 765433 444432 368999999998876543 444443
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.66 E-value=2.5e-16 Score=153.89 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=102.1
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccC-CCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcC
Q 006496 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFY-DPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYG 497 (643)
Q Consensus 419 isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~-~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g 497 (643)
.++++.+|++++|+||+||||||+++++.+.. .+..|...- ..+..+++..|...
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~------------- 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFT------------- 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEE-------------
Confidence 35566689999999999999999999998432 222221100 00111222211111
Q ss_pred CCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHH
Q 006496 498 ASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQ 577 (643)
Q Consensus 498 ~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~ 577 (643)
.++. +-.+.++-..++++++| +..+.+...+|+++||||||+++|+.....+.
T Consensus 78 ------------------------~~~~--~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 78 ------------------------RIGA--EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ------------------------EecC--cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0000 00112222356767665 66667778899999999999999998766554
Q ss_pred HH-HHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHh
Q 006496 578 EA-LERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 578 ~~-i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
.. ++... .++|+|++||+.+.+..+|++..+++|++.+.++..++.
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 43 34332 378999999999999999999999999999988765543
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=3.9e-16 Score=191.04 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=112.1
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHH------HHHHHHHHccCCCE
Q 006496 485 LFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQ------RIAIARAVLKNPAV 558 (643)
Q Consensus 485 lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ------RiaLARAll~~~~I 558 (643)
.|+||++|||.+ . ++++++ +.+++.++.++|+..+|.| ||+++..| .||||||| |+|||||++.+|++
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 489999999999 3 456766 7899999999999999999 99999887 89999999 99999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEEccCcchhh------hcCEEEEEeC---C-EEEEEcChhHH
Q 006496 559 LLLDEATSALDSQSEKVVQEALERLM------VERTSVVVAHRLSTIQ------NCDIIAVLEQ---G-RVVEEGSHQSL 622 (643)
Q Consensus 559 liLDE~TSaLD~~te~~i~~~i~~~~------~~~TvI~ItHrl~~i~------~~D~I~vl~~---G-~Ive~G~~~eL 622 (643)
|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .||+.+.+.. | .+++.-+|+.+
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSL 1306 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCccc
Confidence 99999999999999998888887653 3679999999999876 4577776643 2 24444466655
Q ss_pred hh
Q 006496 623 LA 624 (643)
Q Consensus 623 l~ 624 (643)
+.
T Consensus 1307 ~~ 1308 (1311)
T TIGR00606 1307 GK 1308 (1311)
T ss_pred cc
Confidence 53
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.64 E-value=7.1e-16 Score=155.58 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCC-HHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHH
Q 006496 427 KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHH-LRSLRRHIALVSQEPALFAGTIRENITYGASDKIDES 505 (643)
Q Consensus 427 e~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~-~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e 505 (643)
+.++|+|++|||||||+++|.|++.|.+|+|.++|.++..++ ..++...++++||...--..++.||. ...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~--------~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC--------PKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc--------hHH
Confidence 678999999999999999999999999999999999998775 56888888999996532222343331 000
Q ss_pred HHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC
Q 006496 506 EIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV 585 (643)
Q Consensus 506 ~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~ 585 (643)
+ + ...++|+ .+|+++|+|||++ .+.+...++....
T Consensus 184 ~--------~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~ 218 (270)
T TIGR02858 184 E--------G-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA 218 (270)
T ss_pred H--------H-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence 0 0 1455666 3999999999974 2334444444446
Q ss_pred CceEEEEccCcch--h------------hhcCEEEEEeCCEEEEEcChhHHh
Q 006496 586 ERTSVVVAHRLST--I------------QNCDIIAVLEQGRVVEEGSHQSLL 623 (643)
Q Consensus 586 ~~TvI~ItHrl~~--i------------~~~D~I~vl~~G~Ive~G~~~eLl 623 (643)
++|+|+++|..+. + .-+||+++|++|+ ..|+++++.
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 8999999997655 3 3479999999887 777777665
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=5.3e-14 Score=149.26 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh---cC
Q 006496 536 LQLSGGQKQRIAIARAVL---------KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN---CD 603 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll---------~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~---~D 603 (643)
..+|+||+|+++||+++. ++|||++||||+|.||+.....+.+.+.+. ++++++.||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 579999999999999884 899999999999999999999888888653 4688888998776544 46
Q ss_pred EEEEEeCCEE
Q 006496 604 IIAVLEQGRV 613 (643)
Q Consensus 604 ~I~vl~~G~I 613 (643)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.55 E-value=1.1e-14 Score=143.40 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=100.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc-cHH
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG-TIR 491 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g-Tir 491 (643)
.+.+|+++++++ ++++|+||+||||||+++.+.+..-. ..| .. .+ ..+.+++++.| +|.. +++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g------~~---vp--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG------SF---VP--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC------Ce---ec--cccceecceee---EeccCCch
Confidence 478899999887 99999999999999999999764311 111 11 11 11233555543 2322 344
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHH----HHHHHHH--ccCCCEEEeecc-
Q 006496 492 ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQR----IAIARAV--LKNPAVLLLDEA- 564 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR----iaLARAl--l~~~~IliLDE~- 564 (643)
||+. +||.+. ..+++++ ..+|+++|||||
T Consensus 84 ~~ls--------------------------------------------~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~ 119 (216)
T cd03284 84 DDLA--------------------------------------------GGRSTFMVEMVETANILNNATERSLVLLDEIG 119 (216)
T ss_pred hhhc--------------------------------------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 4443 333332 2355544 358999999999
Q ss_pred --CCCCCHHHH-HHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHH
Q 006496 565 --TSALDSQSE-KVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 565 --TSaLD~~te-~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 622 (643)
|+++|...- ..+.+.+.+. .++|+|++||..+....+|++..+++|++...++.+++
T Consensus 120 ~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 120 RGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999998652 3445555432 47899999999877777888888899998877766555
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.3e-15 Score=150.81 Aligned_cols=195 Identities=25% Similarity=0.389 Sum_probs=136.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--CCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl--~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
.|.++|.+.+-.+ ...+.|-||.|-.|..+++|||+|-|||||++-|.-- .-|..=.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 3777877776542 3578899999999999999999999999999977642 2232223
Q ss_pred ccEEEecCCCCCcccHHHHH---------------------hcCCCCCCCHHHHHHH---HHHhcc-------HHHHHhc
Q 006496 475 HIALVSQEPALFAGTIRENI---------------------TYGASDKIDESEIIEA---GKAANA-------HDFIAGL 523 (643)
Q Consensus 475 ~i~~v~Q~p~lf~gTireNi---------------------~~g~~~~~~~e~i~~a---l~~~~l-------~~~I~~l 523 (643)
+-++.|+.+-=+.|--+-+ .-|. ..--|++.++ |+..++ ...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taaErl~~v~~ELraiGA~sAEarARRILAGL 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAAERLKEVADELRAIGADSAEARARRILAGL 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHhccccchhHHHHHHhhc
Confidence 3444554443322221111 1110 0011222222 222222 2234444
Q ss_pred ccccccccCCCC-CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhh-
Q 006496 524 YEGYDTWCGDRG-LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQN- 601 (643)
Q Consensus 524 p~Gldt~vge~G-~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~- 601 (643)
|++-+..++. ..+|||-|-|++|||||+-.|-+|.|||||..||...---+.+-+..+ .+|.++|+|.-..+.+
T Consensus 400 --GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~V 475 (807)
T KOG0066|consen 400 --GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSV 475 (807)
T ss_pred --CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHH
Confidence 7777777776 479999999999999999999999999999999998777777778777 6899999999999866
Q ss_pred cCEEEEEeCCEEE-EEcCh
Q 006496 602 CDIIAVLEQGRVV-EEGSH 619 (643)
Q Consensus 602 ~D~I~vl~~G~Iv-e~G~~ 619 (643)
|..|+-||+-++- ..|+|
T Consensus 476 CtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 476 CTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHhhhhhhhhhhhcchH
Confidence 9999999998773 44555
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.53 E-value=4.9e-14 Score=139.78 Aligned_cols=73 Identities=29% Similarity=0.426 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHH----HHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEe
Q 006496 537 QLSGGQKQRIAIA----RAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLE 609 (643)
Q Consensus 537 ~LSgGQrQRiaLA----RAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~ 609 (643)
.||||||-+++|| ..-++++|++||||+.++||......+.+.|++..+++-+|++||+......||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999997 333578999999999999999999999999999988889999999999999999998763
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=6.4e-14 Score=136.29 Aligned_cols=140 Identities=18% Similarity=0.131 Sum_probs=94.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccE-EEecCCCCCcccHH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIA-LVSQEPALFAGTIR 491 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~-~v~Q~p~lf~gTir 491 (643)
..+.+|+++++++|+.++|+|||||||||+++.+.++. +..+++ +||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35889999999999999999999999999999998773 222222 222111 111444
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHH
Q 006496 492 ENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ 571 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~ 571 (643)
|||... + |.+..+.++...+|+|++|+ ..+-++..+|+++|||||++++|+.
T Consensus 73 d~I~~~-------------------------~--~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 73 NRLLSR-------------------------L--SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred hheeEe-------------------------c--CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 444211 1 11112334456799999976 4555578899999999999999996
Q ss_pred HHHHH-HHHHHHHc-CCceEEEEccCcchhhhcC
Q 006496 572 SEKVV-QEALERLM-VERTSVVVAHRLSTIQNCD 603 (643)
Q Consensus 572 te~~i-~~~i~~~~-~~~TvI~ItHrl~~i~~~D 603 (643)
....+ ...++.+. .++|+|++||..+.+..++
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 54433 33343332 3789999999998876543
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=1.4e-13 Score=140.65 Aligned_cols=196 Identities=25% Similarity=0.351 Sum_probs=139.5
Q ss_pred EEECCCCCCccceeeeeEEEeCC-----cEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 006496 404 HFAYPARPNVMIFKGFSINIEAK-----KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIAL 478 (643)
Q Consensus 404 sf~Y~~~~~~~vL~~isl~i~~G-----e~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~ 478 (643)
.++||.- +..+.+..|.|+.| |.+...|.+|-||||++++|+|..+|++|. ++..++ ++|
T Consensus 342 ~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~ln-------VSy 406 (592)
T KOG0063|consen 342 RYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN-------VSY 406 (592)
T ss_pred eeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccc-------eec
Confidence 3677753 34678899999998 467889999999999999999999998762 233332 677
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 006496 479 VSQEPA-LFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPA 557 (643)
Q Consensus 479 v~Q~p~-lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~ 557 (643)
=||.-. =|.||+|.=+. +++|.+...-++-..+.+ |--.+..++..-.+||||+.||+|||-++=+.++
T Consensus 407 kpqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 788543 57889987652 234443333332222222 2334445566667899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHH--cCCceEEEEccCcchhh-hcCEEEEEeC--CEEEEEcChhHHhh
Q 006496 558 VLLLDEATSALDSQSEKVVQEALERL--MVERTSVVVAHRLSTIQ-NCDIIAVLEQ--GRVVEEGSHQSLLA 624 (643)
Q Consensus 558 IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~ItHrl~~i~-~~D~I~vl~~--G~Ive~G~~~eLl~ 624 (643)
+++.|||.+-||++....--+.+++. ..++|-.+|-|.+-..- .|||++|.+. +.....-.|+.|+.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 99999999999998776655555543 35799999999976553 4999999874 22333334555554
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.50 E-value=2.2e-14 Score=162.36 Aligned_cols=106 Identities=28% Similarity=0.377 Sum_probs=90.1
Q ss_pred HHHHHHHHhccHHHHHhcccccccccCCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEeeccC-CCC
Q 006496 506 EIIEAGKAANAHDFIAGLYEGYDTWCGDRG------LQLSGGQKQRIAIARAVL----------KNPAVLLLDEAT-SAL 568 (643)
Q Consensus 506 ~i~~al~~~~l~~~I~~lp~Gldt~vge~G------~~LSgGQrQRiaLARAll----------~~~~IliLDE~T-SaL 568 (643)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 44555555543 344467899999999888 689999999999999887 589999999998 789
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC-CEE
Q 006496 569 DSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ-GRV 613 (643)
Q Consensus 569 D~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~-G~I 613 (643)
|+.+...+.+.|.+. ++.|+|+|||+.+....||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999987 78899999999998899999999986 544
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.42 E-value=3.3e-12 Score=137.22 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=127.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC---CeeCCC-----CCHHHHhcccEEEecCCC
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID---GRDIRS-----HHLRSLRRHIALVSQEPA 484 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id---G~di~~-----~~~~~lr~~i~~v~Q~p~ 484 (643)
..+++++ |++.+|++++|+|++|+|||||+++|.|+++|+.|.|.+. |.++.+ ++...+++.+.+|++-.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 3579999 9999999999999999999999999999999999999994 555553 45566788888886421
Q ss_pred CCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHH------ccCCCE
Q 006496 485 LFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAV------LKNPAV 558 (643)
Q Consensus 485 lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAl------l~~~~I 558 (643)
+..-+++..+.-.+.+.|+... .|.|-.+-=.. ++ | .|||. +..||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Ds--lt-----r--~A~A~rEisl~~ge~P- 275 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDS--VT-----R--VAMAQREIGLAVGEPP- 275 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeC--hH-----H--HHHHHHHHHHhcCCCC-
Confidence 1224566666666666677764 36665442211 21 1 22222 12332
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc---CCc-----eEEEEccCcchhhhcCEEEEEeCCEEEEEcChhH
Q 006496 559 LLLDEATSALDSQSEKVVQEALERLM---VER-----TSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQS 621 (643)
Q Consensus 559 liLDE~TSaLD~~te~~i~~~i~~~~---~~~-----TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~e 621 (643)
.|+++|+..-..+.+.+++.. ++. ||++.+|+++. .-||++.++.+|+|+..++..+
T Consensus 276 -----~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 -----TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -----ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999988888887765 354 99999999985 7899999999999999988643
No 426
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.33 E-value=2.2e-12 Score=144.97 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=71.6
Q ss_pred CCChhHHHHHHHHHHHccC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 537 QLSGGQKQRIAIARAVLKN----PAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~----~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
.+||||+||++|||+++.. |+++||||||++||+.+...+.+.|.++.+++|||+|||++..+..||++++|++|.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 5999999999999999875 699999999999999999999999999888899999999999999999999999875
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=6.9e-12 Score=123.18 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=89.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhc--cCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc--ccH
Q 006496 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIER--FYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA--GTI 490 (643)
Q Consensus 415 vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~g--l~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~--gTi 490 (643)
|-+|+++.=..+.+++|+||+|+||||+++.+.. .+ +..|....... ..++|..|...-+. +|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~-----------~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS-----------ATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC-----------cEEeeeeeeeeeeCCccCh
Confidence 4456665422237899999999999999999983 33 55665443221 13666666532221 011
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCH
Q 006496 491 RENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570 (643)
Q Consensus 491 reNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~ 570 (643)
.+++ ..| --+-||+++|+++..+|+++|||||++++|+
T Consensus 86 ~~~~----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 86 SSGQ----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhcc----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 1111 112 2345899999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHcC----CceEEEEccCcchhhhc
Q 006496 571 QS-EKVVQEALERLMV----ERTSVVVAHRLSTIQNC 602 (643)
Q Consensus 571 ~t-e~~i~~~i~~~~~----~~TvI~ItHrl~~i~~~ 602 (643)
.. .......++.+.+ ..++|++||.++.+...
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 65 4454556665543 24899999999987765
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.31 E-value=4.6e-12 Score=125.14 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccC-----CCCCHHHHHHHHHHHHHH
Q 006496 541 GQKQRIAIARAVLKNPAVLLLDEAT-----SALDSQSEKVVQEALERL 583 (643)
Q Consensus 541 GQrQRiaLARAll~~~~IliLDE~T-----SaLD~~te~~i~~~i~~~ 583 (643)
-|++++.|||+++.+|++++||||| ++||+.+.+.+.+.++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3999999999999999999999999 999999999999999876
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.30 E-value=5.5e-12 Score=140.55 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 537 QLSGGQKQRIAIARAVLK----NPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~----~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
.+||||+||++|||+++. +|+++|||||+++||..+...+.+.|++..+++|+|+|||.++....||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 499999999999999996 5899999999999999999999999999878899999999999999999999998753
No 430
>PRK14079 recF recombination protein F; Provisional
Probab=99.28 E-value=4.4e-11 Score=126.36 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=63.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEE
Q 006496 536 LQLSGGQKQRIAIARAVL---------KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIA 606 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll---------~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~ 606 (643)
.-+|+||++++++|+.+. .+|+|++||||+|.||......+.+.|... ..+.|+-|+.. ..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~~~---~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTEAP---PGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCCCC---CCCceEE
Confidence 468999999999999998 899999999999999999888888887653 25666655533 4689999
Q ss_pred EEeCCEEEEEc
Q 006496 607 VLEQGRVVEEG 617 (643)
Q Consensus 607 vl~~G~Ive~G 617 (643)
++++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999886443
No 431
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.26 E-value=5.4e-12 Score=121.42 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHcc--CCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCceEEEEccCcchhhhcCEEE
Q 006496 532 GDRGLQLSGGQKQRIAIARAVLK--NPAVLLLDEATSALDSQSEKVV-QEALERLM--VERTSVVVAHRLSTIQNCDIIA 606 (643)
Q Consensus 532 ge~G~~LSgGQrQRiaLARAll~--~~~IliLDE~TSaLD~~te~~i-~~~i~~~~--~~~TvI~ItHrl~~i~~~D~I~ 606 (643)
.++-..+|+|++| +++++.. +|+++|+|||++++|+.....+ ...++.+. .++++|++||..+..+.+|+--
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 3444578888887 4555554 9999999999999999866654 44455443 2689999999998777677533
Q ss_pred EEeCCE
Q 006496 607 VLEQGR 612 (643)
Q Consensus 607 vl~~G~ 612 (643)
-+++++
T Consensus 133 ~v~~~~ 138 (185)
T smart00534 133 GVRNLH 138 (185)
T ss_pred cceEEE
Confidence 334443
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=4.5e-12 Score=120.80 Aligned_cols=79 Identities=24% Similarity=0.274 Sum_probs=64.3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeec--cCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeCCE
Q 006496 535 GLQLSGGQKQRIAIARAVLKNPAVLLLDE--ATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQGR 612 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~~~~IliLDE--~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~G~ 612 (643)
...+||+++-+..+++..+++|+++++|| |+..+|....+.+.++++ .++++|+++|+-..-..+|+|..+.+|+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 34699999999999999999999999999 444555555555555552 3789999999965556799999999999
Q ss_pred EEEE
Q 006496 613 VVEE 616 (643)
Q Consensus 613 Ive~ 616 (643)
|.+.
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 9887
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.23 E-value=9.9e-11 Score=134.79 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=97.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCC-cEEEEEcCCCCCHHHHHHHHhcc-CCCCCcEEEECCeeCCCCCHHHHhc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAK-KSTALVGQSGSGKSTIIGLIERF-YDPLKGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTL~~lL~gl-~~~~~G~I~idG~di~~~~~~~lr~ 474 (643)
.+.++++..-+-.. .. .-.+|+++.++ +.++|+||+|+||||+++.+.+. +-+..|
T Consensus 295 ~i~l~~~rhPll~~-~~--~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------- 352 (771)
T TIGR01069 295 KIILENARHPLLKE-PK--VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------- 352 (771)
T ss_pred CEEEccccCceecC-Cc--eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-------------------
Confidence 57777765422111 00 12368888877 99999999999999999999987 334333
Q ss_pred ccEEEecCCC-CCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc
Q 006496 475 HIALVSQEPA-LFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL 553 (643)
Q Consensus 475 ~i~~v~Q~p~-lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll 553 (643)
.+||..+. .+ .+.+++.. ...+++ .+.++-..+|+|++|+..+++++
T Consensus 353 --~~Vpa~~~~~~--~~~d~i~~----~i~~~~-----------------------si~~~LStfS~~m~~~~~il~~~- 400 (771)
T TIGR01069 353 --IPIPANEHSEI--PYFEEIFA----DIGDEQ-----------------------SIEQNLSTFSGHMKNISAILSKT- 400 (771)
T ss_pred --CCccCCccccc--cchhheee----ecChHh-----------------------HHhhhhhHHHHHHHHHHHHHHhc-
Confidence 14444432 11 12223211 111111 11122356999999999999987
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc-CCceEEEEccCcch
Q 006496 554 KNPAVLLLDEATSALDSQSEKVVQ-EALERLM-VERTSVVVAHRLST 598 (643)
Q Consensus 554 ~~~~IliLDE~TSaLD~~te~~i~-~~i~~~~-~~~TvI~ItHrl~~ 598 (643)
.+|+++|||||++++|+.....+. ..++.+. +++++|++||..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 789999999999999998877664 4444432 47899999999765
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=8.2e-11 Score=129.65 Aligned_cols=110 Identities=33% Similarity=0.485 Sum_probs=86.6
Q ss_pred HHHhcccccccccCCCCCCCChhHHHHHHHHHHHccC--CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccC
Q 006496 519 FIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKN--PAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHR 595 (643)
Q Consensus 519 ~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~--~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHr 595 (643)
|+...--||-|. .-....|||||.|||-||+.+-.. -=++|||||+.+|-+.--..+.++|+++. .+.|+|+|-|+
T Consensus 464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD 542 (935)
T COG0178 464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD 542 (935)
T ss_pred HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 444443355554 333458999999999999999876 46889999999998865555556666554 37999999999
Q ss_pred cchhhhcCEEEEE------eCCEEEEEcChhHHhhcCCCcH
Q 006496 596 LSTIQNCDIIAVL------EQGRVVEEGSHQSLLAKGPAGA 630 (643)
Q Consensus 596 l~~i~~~D~I~vl------~~G~Ive~G~~~eLl~~~~~g~ 630 (643)
.++++.||+|+=| ..|+|+.+|+|++++++ ++++
T Consensus 543 edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~-~~Sl 582 (935)
T COG0178 543 EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN-PESL 582 (935)
T ss_pred HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC-Ccch
Confidence 9999999999998 46899999999999985 4443
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.20 E-value=3.1e-11 Score=125.49 Aligned_cols=144 Identities=16% Similarity=0.257 Sum_probs=100.3
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCC
Q 006496 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGA 498 (643)
Q Consensus 419 isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~ 498 (643)
+++.+++|+.++|+|++|||||||+++|++++++..|.+.|+ |..++.+.. ++.+.++.+... + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----C-
Confidence 457788999999999999999999999999999998988885 334433321 122222211000 0 0
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHH
Q 006496 499 SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQE 578 (643)
Q Consensus 499 ~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~ 578 (643)
...++ ..=+++++|-.+|+++++|||.+ .+. .+
T Consensus 202 ~~~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~e~----~~ 234 (308)
T TIGR02788 202 LAKVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG---DEA----FD 234 (308)
T ss_pred cCccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC---HHH----HH
Confidence 00111 11245667888999999999996 232 33
Q ss_pred HHHHHcCCc-eEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHHhh
Q 006496 579 ALERLMVER-TSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSLLA 624 (643)
Q Consensus 579 ~i~~~~~~~-TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 624 (643)
.++....+. +++..+|..+.....||+..|..|++...|.+.+.+.
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 344433444 5699999999888899999999999999998888774
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=3.3e-10 Score=120.15 Aligned_cols=63 Identities=30% Similarity=0.388 Sum_probs=56.2
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhh
Q 006496 536 LQLSGGQKQRIAIARAVLK---------NPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQ 600 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~---------~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~ 600 (643)
..+|.||+++++||.++.. +|||||||||+|.||+...+.+.+.|.+. +.+++++||.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999898888753 579999999987654
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.15 E-value=1.6e-10 Score=113.63 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=41.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhc-cCCCCCcEEEE
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIER-FYDPLKGVVKI 459 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~g-l~~~~~G~I~i 459 (643)
..+.+|+++++++|++++|+||+|+||||+++.+.+ .+.++.|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 357899999999999999999999999999999999 66778887543
No 438
>PRK01156 chromosome segregation protein; Provisional
Probab=99.13 E-value=1.3e-10 Score=138.50 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=66.7
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---C-ceEEEEccCcchhhhcC
Q 006496 534 RGLQLSGGQKQRIAI------ARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV---E-RTSVVVAHRLSTIQNCD 603 (643)
Q Consensus 534 ~G~~LSgGQrQRiaL------ARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~---~-~TvI~ItHrl~~i~~~D 603 (643)
....|||||+||+|| ||+++.+|++++|||||++||+.....+.+.+..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 457899999999975 5999999999999999999999998888888765332 2 48999999999999999
Q ss_pred EEEEEe
Q 006496 604 IIAVLE 609 (643)
Q Consensus 604 ~I~vl~ 609 (643)
+|+.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 439
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.11 E-value=4.4e-11 Score=126.90 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=56.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc-EEEECCeeCCCCCHHHHhcccEEEecCC
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG-VVKIDGRDIRSHHLRSLRRHIALVSQEP 483 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G-~I~idG~di~~~~~~~lr~~i~~v~Q~p 483 (643)
.+|++||+++++||.++||||||||||||++ .|+.+|++| +|.+||.++...+..+++..= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4799999999999999999999999999999 778888888 799999999887665433221 777753
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.11 E-value=1e-09 Score=109.13 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=82.3
Q ss_pred EeCCcEEEEEcCCCCCHHHH-HHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHH-hcCCCC
Q 006496 423 IEAKKSTALVGQSGSGKSTI-IGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENI-TYGASD 500 (643)
Q Consensus 423 i~~Ge~vaIvG~sGsGKSTL-~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi-~~g~~~ 500 (643)
+++|+.+.|+|++||||||+ .+.+.++.++.+..+.+... .++ ..+.++. .+|
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~------------------~~~~~~~~~~g--- 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTT------------------TEFIKQMMSLG--- 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCH------------------HHHHHHHHHhC---
Confidence 79999999999999999999 68888887654333333211 111 1122222 122
Q ss_pred CCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc----CCCEEEeeccCCCC----CHHH
Q 006496 501 KIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK----NPAVLLLDEATSAL----DSQS 572 (643)
Q Consensus 501 ~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~----~~~IliLDE~TSaL----D~~t 572 (643)
.+.++. ...-.+ .-+ + +. ..+|+++.++-.++|.+-. +|+++++||||+.+ |+..
T Consensus 76 -~~~~~~---~~~~~l----~~~----~--~~---~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 -YDINKK---LISGKL----LYI----P--VY---PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred -CchHHH---hhcCcE----EEE----E--ec---ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 111111 000000 000 0 00 1366666655555544433 69999999999999 6666
Q ss_pred HHHHHHHHHHHcC-CceEEEEccCcchhh---------hcCEEEEEe
Q 006496 573 EKVVQEALERLMV-ERTSVVVAHRLSTIQ---------NCDIIAVLE 609 (643)
Q Consensus 573 e~~i~~~i~~~~~-~~TvI~ItHrl~~i~---------~~D~I~vl~ 609 (643)
.+.+.+.++.+.+ ++|+ ++||...... -||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 6677777776644 5555 5566544321 257788776
No 441
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=1.8e-10 Score=118.27 Aligned_cols=170 Identities=27% Similarity=0.342 Sum_probs=111.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE--CCeeC-CCCCHHHH------------hcc--cEEEecCCCCC
Q 006496 424 EAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI--DGRDI-RSHHLRSL------------RRH--IALVSQEPALF 486 (643)
Q Consensus 424 ~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i--dG~di-~~~~~~~l------------r~~--i~~v~Q~p~lf 486 (643)
+||+..++||.+|-||||-++.|+|-.+|.-|.--- |+..+ ....-.+| +.- .-||-|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 479999999999999999999999999997775210 11110 00111111 110 12333334444
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCC
Q 006496 487 AGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATS 566 (643)
Q Consensus 487 ~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TS 566 (643)
.|++++++.-- .+.+...++++.-+|... +|-++ ..||||+-||.++|-+...++|++++|||.|
T Consensus 178 k~~v~~~l~~~----~~r~~~~~~~~~~~L~~~-------~~re~----~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 178 KGTVGSLLDRK----DERDNKEEVCDQLDLNNL-------LDREV----EQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHH----hhcccHHHHHHHHHHhhH-------HHhhh----hhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 45666665311 111122333433333322 22233 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCEEEEE
Q 006496 567 ALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDIIAVL 608 (643)
Q Consensus 567 aLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~I~vl 608 (643)
-||.+..-.--.+|+.+. .++=+|+|-|.|+.+-. +|-|..+
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEE
Confidence 999987777777777764 46889999999998643 5666655
No 442
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.07 E-value=8.1e-10 Score=129.03 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=57.6
Q ss_pred ccCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCcchh----------hhcCEEEEEeCCEEEEEcC
Q 006496 553 LKNPAVLLLDEATSAL-DSQSEKVVQEALERLM-VERTSVVVAHRLSTI----------QNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 553 l~~~~IliLDE~TSaL-D~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i----------~~~D~I~vl~~G~Ive~G~ 618 (643)
..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||.++.+ ..||+.++|.+|++.+.|+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5789999999999999 6888889999988764 478999999999886 4799999999999987764
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.05 E-value=2e-09 Score=103.63 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=60.3
Q ss_pred ccccccCCCCCCCChhHHH------HHHHHHHHccCCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCceEEEEccC
Q 006496 526 GYDTWCGDRGLQLSGGQKQ------RIAIARAVLKNPAVLLLDEATSALD---SQSEKVVQEALERLM-VERTSVVVAHR 595 (643)
Q Consensus 526 Gldt~vge~G~~LSgGQrQ------RiaLARAll~~~~IliLDE~TSaLD---~~te~~i~~~i~~~~-~~~TvI~ItHr 595 (643)
|....+......+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3334445555678999998 3444444456899999999999999 666666666665543 36899999998
Q ss_pred cch---------h-hhcCEEEEEe
Q 006496 596 LST---------I-QNCDIIAVLE 609 (643)
Q Consensus 596 l~~---------i-~~~D~I~vl~ 609 (643)
... + .-||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 3 3489999997
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.04 E-value=4e-10 Score=134.52 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=66.3
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEEEE
Q 006496 536 LQLSGGQKQ------RIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIAVL 608 (643)
Q Consensus 536 ~~LSgGQrQ------RiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~vl 608 (643)
..|||||+| |+||||++.++|+++||||||++||+.....+.+.|..... +.|+|+|||+.+....||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 66677789999999999999999999999999988887644 46899999999988889999999
Q ss_pred e
Q 006496 609 E 609 (643)
Q Consensus 609 ~ 609 (643)
+
T Consensus 867 ~ 867 (880)
T PRK03918 867 S 867 (880)
T ss_pred E
Confidence 8
No 445
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=3.7e-10 Score=130.43 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=60.1
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCceEEEEccCcchhhhc-CEEEEEe
Q 006496 533 DRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEA-LERLM-VERTSVVVAHRLSTIQNC-DIIAVLE 609 (643)
Q Consensus 533 e~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~-i~~~~-~~~TvI~ItHrl~~i~~~-D~I~vl~ 609 (643)
.+-..+|+|++|+..++|++ .+|+++|||||++++|+.....+... ++.+. .++++|++||..+....+ |+..+ .
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-E 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-E
Confidence 34467999999999999998 88999999999999999877766443 43332 468999999998876553 43333 3
Q ss_pred CCEEE
Q 006496 610 QGRVV 614 (643)
Q Consensus 610 ~G~Iv 614 (643)
++.+.
T Consensus 464 ~~~~~ 468 (782)
T PRK00409 464 NASVE 468 (782)
T ss_pred EEEEE
Confidence 45543
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.01 E-value=7.1e-10 Score=107.84 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCC-CcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHH
Q 006496 428 STALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESE 506 (643)
Q Consensus 428 ~vaIvG~sGsGKSTL~~lL~gl~~~~-~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~ 506 (643)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +..+ ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 58999999999999999999998754 566655443321 1000 001111111
Q ss_pred HHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 006496 507 IIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMVE 586 (643)
Q Consensus 507 i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~ 586 (643)
++|.+...++. ++++|+..+|+++++||+. |.++-..+ ++....+
T Consensus 55 -----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G 99 (198)
T cd01131 55 -----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETG 99 (198)
T ss_pred -----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcC
Confidence 11111112221 4889999999999999996 66654433 3344468
Q ss_pred ceEEEEccCcchhhhcCEEEEEe
Q 006496 587 RTSVVVAHRLSTIQNCDIIAVLE 609 (643)
Q Consensus 587 ~TvI~ItHrl~~i~~~D~I~vl~ 609 (643)
++++.++|..+.....||++.|-
T Consensus 100 ~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 100 HLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CEEEEEecCCcHHHHHhHHHhhc
Confidence 89999999999888888887663
No 447
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.01 E-value=4.2e-10 Score=138.69 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=68.6
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEE
Q 006496 534 RGLQLSGGQKQRIAIARAV----LKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVL 608 (643)
Q Consensus 534 ~G~~LSgGQrQRiaLARAl----l~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl 608 (643)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|....++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 58889999999999999999999999998887788999999999999999999755
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.5e-09 Score=130.94 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHHcc----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhh-hcC
Q 006496 536 LQLSGGQKQRIAIARAVLK----------NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQ-NCD 603 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~----------~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~-~~D 603 (643)
.+||||+++|++||+||.. +|++|+|||||++||+++...+.+.|..+. .++||++|||...... .+|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 5799999999999999985 799999999999999999999999998764 4689999999998875 489
Q ss_pred EEEEEeCC
Q 006496 604 IIAVLEQG 611 (643)
Q Consensus 604 ~I~vl~~G 611 (643)
+|.|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999764
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=3.5e-09 Score=113.06 Aligned_cols=168 Identities=16% Similarity=0.189 Sum_probs=116.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 006496 397 HIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHI 476 (643)
Q Consensus 397 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i 476 (643)
.++-++++-.|... ..+++++ +++.+||+++|+|++|+|||||++.|.|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 35666666666532 3467775 99999999999999999999999999999999888777666421
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHc---
Q 006496 477 ALVSQEPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVL--- 553 (643)
Q Consensus 477 ~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll--- 553 (643)
-+++|.+. +.++..++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 195 -----------~ev~e~~~-------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 -----------REVKDFIR-------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------ccHHHHHH-------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23334332 111111111 11111333568999999999999887
Q ss_pred ----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhhcCEEEEEeCCEEEEEcC
Q 006496 554 ----KNPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQNCDIIAVLEQGRVVEEGS 618 (643)
Q Consensus 554 ----~~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~ 618 (643)
.++-++++||+|...|+. +.|-..+.+.- .+.|..+-+|-.+..+++-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 778999999999999997 44444444433 36778887885555566655 47888876655
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.95 E-value=7e-09 Score=97.04 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHH
Q 006496 428 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEI 507 (643)
Q Consensus 428 ~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i 507 (643)
.+.|+|++|+||||++..+++...+..|.+.+ ++++... ...+++.... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~-------------------~~~e~~~--~~~~~~~~~~-----~---- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVY-------------------VDIEEEI--EELTERLIGE-----S---- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEE-------------------EECCcch--HHHHHHHhhh-----h----
Confidence 37899999999999999999988776565544 3332211 0111111000 0
Q ss_pred HHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCH----------HHHHHHH
Q 006496 508 IEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS----------QSEKVVQ 577 (643)
Q Consensus 508 ~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~----------~te~~i~ 577 (643)
....+++. ..+.......+.++.++++.+++...+|+++|+||+++-++. ...+.+.
T Consensus 51 ------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~ 117 (165)
T cd01120 51 ------------LKGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELR 117 (165)
T ss_pred ------------hccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00001111 111222223455666688999999999999999999965544 3344555
Q ss_pred HHHHHHc-CCceEEEEccCcchh
Q 006496 578 EALERLM-VERTSVVVAHRLSTI 599 (643)
Q Consensus 578 ~~i~~~~-~~~TvI~ItHrl~~i 599 (643)
+.+.... .+.|+|+++|..+..
T Consensus 118 ~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 118 ELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhcCCceEEEEEecCCcc
Confidence 4444433 378999999987654
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=2e-09 Score=105.48 Aligned_cols=79 Identities=27% Similarity=0.255 Sum_probs=65.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCC------------CCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHH
Q 006496 424 EAKKSTALVGQSGSGKSTIIGLIERFYD------------PLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIR 491 (643)
Q Consensus 424 ~~Ge~vaIvG~sGsGKSTL~~lL~gl~~------------~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTir 491 (643)
++|+.++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 699999999999988854 588889999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHH
Q 006496 492 ENITYGASDKIDESEIIEAGK 512 (643)
Q Consensus 492 eNi~~g~~~~~~~e~i~~al~ 512 (643)
+|. +| .+.+.+.++++
T Consensus 78 ~~~-y~----~~~~~i~~~l~ 93 (205)
T PRK00300 78 GNY-YG----TPRSPVEEALA 93 (205)
T ss_pred Ccc-cc----CcHHHHHHHHH
Confidence 984 55 34555655553
No 452
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.92 E-value=4.4e-09 Score=110.12 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHccCcCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccee-----------eeeEEEeCCcEEEEEc
Q 006496 365 SDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELEDVHFAYPARPNVMIFK-----------GFSINIEAKKSTALVG 433 (643)
Q Consensus 365 ~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~~vL~-----------~isl~i~~Ge~vaIvG 433 (643)
..+.+|++++++..+.. +..++...+.|+|+||+|.||+. .++|+ |+++.|.+||+++|||
T Consensus 104 ~~~~ER~~~Ll~v~~vn------~~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 104 PKEGERYFALLKVESVN------GDDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred cccHhHHHHHhCCCccC------CCCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 45667888888764431 11223345789999999999964 36897 9999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCC
Q 006496 434 QSGSGKSTIIGLIERFYDPL 453 (643)
Q Consensus 434 ~sGsGKSTL~~lL~gl~~~~ 453 (643)
++|+|||||++++.+.+...
T Consensus 176 ~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCChhHHHHHHHHhhccc
Confidence 99999999999999988653
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.91 E-value=1.9e-09 Score=132.74 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=68.9
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcchhhhcCEEEEEeC
Q 006496 536 LQLSGGQKQRIAIARAVL----KNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLSTIQNCDIIAVLEQ 610 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll----~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~~i~~~D~I~vl~~ 610 (643)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|....++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999997 588999999999999999999999999988777889999999999999999987753
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=5.7e-08 Score=87.88 Aligned_cols=117 Identities=32% Similarity=0.422 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCC
Q 006496 425 AKKSTALVGQSGSGKSTIIGLIERFYDPLK-GVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKID 503 (643)
Q Consensus 425 ~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~-G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~ 503 (643)
+|..+.|+||+||||||+++.|++.+.... +.+.++..........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 47 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLD--------------------------------- 47 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHH---------------------------------
Confidence 478899999999999999999999997755 4555555422111111
Q ss_pred HHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHH-----
Q 006496 504 ESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQE----- 578 (643)
Q Consensus 504 ~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~----- 578 (643)
+.. .....+......+++.++..+++|-..+++++++||+....+.........
T Consensus 48 --~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 48 --QLL-------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --HHH-------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 100 222334445688999999999999998899999999999999987775543
Q ss_pred --HHHHHcCCceEEEEccC
Q 006496 579 --ALERLMVERTSVVVAHR 595 (643)
Q Consensus 579 --~i~~~~~~~TvI~ItHr 595 (643)
..........+|.++|.
T Consensus 107 ~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHhcCCCEEEEEeCC
Confidence 22334456778888884
No 455
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.88 E-value=6e-05 Score=80.24 Aligned_cols=242 Identities=8% Similarity=0.040 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 006496 118 YSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 197 (643)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 197 (643)
.+..++.++++...+..+..++......+.+..+.+.+.++=++.. .. ++| =+|++.|+..+-+.......
T Consensus 140 ~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~i---enP----DQRIqEDi~~F~~~tl~L~~ 210 (409)
T PRK11098 140 EVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HI---EGA----AQRVQEDTMRFASTLENLGV 210 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC---CCc----cHhHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666777777777777777666443 11 344 47889999999988877888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 198 LLVQTFSSITIAFTMSLIISWRL-------------ALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESSKLAAEAV 264 (643)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l-------------~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 264 (643)
.++..+++++..+.+++.++..+ .+++++...+...+..+.++.+.+..-+.++..+.....+.-.=
T Consensus 211 ~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvr 290 (409)
T PRK11098 211 SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGE 290 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhh
Confidence 88888888877777777766532 22333222333333344555554443333332222222111000
Q ss_pred chHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 006496 265 SNLRTINAFSSQ-ERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFLI 343 (643)
Q Consensus 265 ~gi~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~ 343 (643)
++.+ +.| +...+++.+..+++.+...+..++.........+ ...+-+.+.+-...+|.++.|.+..+...
T Consensus 291 enaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~----~~i~P~iv~aP~y~aG~ItlG~l~Q~~~A 361 (409)
T PRK11098 291 DDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQV----DNVFGLFLLFPSIVAGTITLGLMTQITNV 361 (409)
T ss_pred hhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 1111 223 3455566666666665554444443333222222 22222222344566999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 006496 344 LVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDR 377 (643)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 377 (643)
.......++.+...+..+..-.+..+|+.++.+.
T Consensus 362 F~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 362 FGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 456
>PRK12369 putative transporter; Reviewed
Probab=98.85 E-value=8.1e-05 Score=77.61 Aligned_cols=241 Identities=11% Similarity=0.051 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 006496 118 YSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 197 (643)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 197 (643)
.++.+.+++++..++..+..|+......+.+..+.+.++++-+..+- ..++|. +|++.|+..+-+.......
T Consensus 65 ~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~----~iDNPD----QRI~EDi~~f~~~tl~l~~ 136 (326)
T PRK12369 65 SILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD----NIEGSS----QRIQEDTYRFAKIMESLGL 136 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcc----HhHHHHHHHHHHHHHHHHH
Confidence 44555556666666667777777777888888888888888776431 124554 7999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HH
Q 006496 198 LLVQTFSSITIAFTMSLIISWRL------------ALVIIAVQPLVIVCLYGKEVLLKSMSKKVIKAQDESS-KLA--AE 262 (643)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l------------~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~e 262 (643)
.++..++.++....+++.++..+ .+++++...+...+..+.++.+.+..-+.++..+... .++ .|
T Consensus 137 ~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre 216 (326)
T PRK12369 137 SFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAED 216 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhcc
Confidence 88888888877777777655322 2222222222233334445544433333222222221 111 11
Q ss_pred HHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 006496 263 AVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGGRLVGRGYIDGKSLFEIFL 342 (643)
Q Consensus 263 ~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~ 342 (643)
.-+. |.-.+...+++.+..+...+...+..++..+...... +...+-+.+.+.....|.++.|.+..+-.
T Consensus 217 ~ae~------~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~----~~~i~p~li~aP~y~sg~i~lG~l~Q~~~ 286 (326)
T PRK12369 217 DKKN------YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQ----MMVIVPYLIMAPGLFAGVITLGVLMQISN 286 (326)
T ss_pred chhh------hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 1111 2111445566666666655555544444433333222 22222222334456689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006496 343 ILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLD 376 (643)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 376 (643)
+.......++.+...+..+..-.+..+|+.++.+
T Consensus 287 AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 287 AFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888999999999999999999999887754
No 457
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=1.2e-08 Score=100.15 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=79.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCc-ccH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFA-GTI 490 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~-gTi 490 (643)
..+.+|++|++++|++++|+||+|+||||+++.+....-. +-|.- +-.. +..+.++ ..+|. -.-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~----------~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAK----------SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCcc----------ccEeccc---cEEEEecCc
Confidence 3578999999999999999999999999999887664311 11100 0000 0001111 11221 122
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCH
Q 006496 491 RENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDS 570 (643)
Q Consensus 491 reNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~ 570 (643)
.||+..|. ..+ ..|+ ++++-.=....+|.++|||||.++.|+
T Consensus 83 ~d~~~~~~-StF-~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 83 RDDIMKGE-STF-MVEL------------------------------------SETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccccCc-chH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 33333221 001 0111 111111111246899999999999999
Q ss_pred HHHHHHHHH-HHHHcC--CceEEEEccCcchhhhc
Q 006496 571 QSEKVVQEA-LERLMV--ERTSVVVAHRLSTIQNC 602 (643)
Q Consensus 571 ~te~~i~~~-i~~~~~--~~TvI~ItHrl~~i~~~ 602 (643)
.....+... ++.+.+ ++++|++||..+.+...
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 876655555 554444 78999999998876554
No 458
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.83 E-value=5.7e-10 Score=126.97 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 250 IKAQDESSKLAAEAVSNLRTINAFSSQERIQKML-----KKAHEAPRREGVRQSWIAGICLAFSRALVSCVVALAFWYGG 324 (643)
Q Consensus 250 ~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (643)
........+.+.|++.++.+||..+.+......| .....+..+...+..........+...+......+++++|.
T Consensus 36 ~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~ 115 (644)
T PRK10733 36 TFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGV 115 (644)
T ss_pred HHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHH
Confidence 3344455667788899999999998887665555 33444444333333222222223333344444556667888
Q ss_pred HHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCCCCCCCCCccccEEEE
Q 006496 325 RLVGRGYIDGK---SLFEIFLILVSTGKVIADAGTMTTDIAKGSDAVASVFAVLDRHTKIDPDDLNGYQPEKIIGHIELE 401 (643)
Q Consensus 325 ~lv~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 401 (643)
+++..+.++.| .++++..+...+..+ ..+...+..+.....+..++.++.+...+ +.
T Consensus 116 ~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~----------~~--------- 175 (644)
T PRK10733 116 WIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLRE----------PS--------- 175 (644)
T ss_pred HHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhC----------HH---------
Confidence 88888888776 444333332233333 33344455555555556666555542110 00
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCC
Q 006496 402 DVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYD 451 (643)
Q Consensus 402 nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~ 451 (643)
..+++...+++| +.++||+|+||||+++++.+...
T Consensus 176 -------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122245566 99999999999999999988664
No 459
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.77 E-value=4.4e-05 Score=78.47 Aligned_cols=213 Identities=13% Similarity=0.032 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 006496 87 AVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTKRIRENMLSKILTFEVGW 166 (643)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~~ 166 (643)
.+........+.+.+.....+.... ...++.++++++...++.....|+......+....+...+.++-++-. .|
T Consensus 41 ~lsv~~~~~~g~~~~aL~~~d~~~f----~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~y 115 (281)
T PF06472_consen 41 YLSVRINFWNGDFYNALQQKDLQAF----WRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TY 115 (281)
T ss_pred HHHHHHHHHhhHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hh
Confidence 3444444555555555443332222 223344555556666666666677777777777777777777777655 44
Q ss_pred cccCCcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006496 167 FDQDENS---SGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLAL-VIIAVQPLVIVCLYGKEVLL 242 (643)
Q Consensus 167 f~~~~~~---~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-v~~~~~~l~~~~~~~~~~~~ 242 (643)
|.- ... ....=+|++.|++.+-+........++.+++.++.....+.-++...+. ++++..++...+....++..
T Consensus 116 Y~l-~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l 194 (281)
T PF06472_consen 116 YRL-NNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPL 194 (281)
T ss_pred Hhh-hccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 431 111 2234469999999999988888888888888777766666555443444 55555555566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 243 KSMSKKVIKAQDESSKLAAEAVSNLRTINAFSSQERIQKMLKKAHEAPRREGVRQSWIAGICL 305 (643)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
.+...+.++..+.......-..++.+.|-.|+.|+.+.++..+..++..+...+..+......
T Consensus 195 ~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~ 257 (281)
T PF06472_consen 195 GRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLG 257 (281)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777788889999999999999988888777776554444433333333
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.76 E-value=1.3e-07 Score=94.68 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc-cCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHh-cCCC
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLIER-FYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENIT-YGAS 499 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL~g-l~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~-~g~~ 499 (643)
-+++|..+.|.|++|||||||...++- ... ..++ +.|+..+-. ...+.+|.. +|
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~--~~~~~~~~~~~g-- 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENT--SKSYLKQMESVK-- 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCC--HHHHHHHHHHCC--
Confidence 589999999999999999999988753 222 2223 444443221 122333321 12
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHcc--CCCEEEeeccCCCCCH---HHHH
Q 006496 500 DKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLK--NPAVLLLDEATSALDS---QSEK 574 (643)
Q Consensus 500 ~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~--~~~IliLDE~TSaLD~---~te~ 574 (643)
.+.++. .. .+...++..-| +.....|.++++++..++..++ +|+++++||||+.+|. +.-.
T Consensus 77 --~~~~~~---~~-~g~l~i~~~~~--------~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~ 142 (234)
T PRK06067 77 --IDISDF---FL-WGYLRIFPLNT--------EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDIL 142 (234)
T ss_pred --CChhHH---Hh-CCCceEEeccc--------cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHH
Confidence 111111 00 00000111111 1122457789999999999998 8999999999965553 3333
Q ss_pred HHHHHHHHH-cCCceEEEEccCcch-------h-hhcCEEEEEeC
Q 006496 575 VVQEALERL-MVERTSVVVAHRLST-------I-QNCDIIAVLEQ 610 (643)
Q Consensus 575 ~i~~~i~~~-~~~~TvI~ItHrl~~-------i-~~~D~I~vl~~ 610 (643)
.+.+.++.. .+++|+++++|.... + --+|-++.|+.
T Consensus 143 ~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 143 NFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 343344432 346899999997653 2 23577777763
No 461
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.76 E-value=2e-08 Score=101.36 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchh
Q 006496 537 QLSGGQKQRIAIARAVLKNP---AVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTI 599 (643)
Q Consensus 537 ~LSgGQrQRiaLARAll~~~---~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i 599 (643)
.+|.|+||.+.|+-+++..+ .++++|||-++|.|...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999998876 89999999999999999988899987766 67899999998754
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=1.6e-08 Score=120.75 Aligned_cols=76 Identities=32% Similarity=0.375 Sum_probs=65.7
Q ss_pred CCCChhHHH------HHHHHHHHccC------CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCcchhhh
Q 006496 536 LQLSGGQKQ------RIAIARAVLKN------PAVLLLDEATSALDSQSEKVVQEALERLMV-E-RTSVVVAHRLSTIQN 601 (643)
Q Consensus 536 ~~LSgGQrQ------RiaLARAll~~------~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~-~TvI~ItHrl~~i~~ 601 (643)
..||||||| |+|+||++..+ ++++||||||+++|+.....+.+.|..... + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999863 367999999999999998888888877643 3 479999999999999
Q ss_pred cCEEEEEeCC
Q 006496 602 CDIIAVLEQG 611 (643)
Q Consensus 602 ~D~I~vl~~G 611 (643)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999743
No 463
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.71 E-value=2.8e-08 Score=119.41 Aligned_cols=76 Identities=28% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh-cCE
Q 006496 535 GLQLSGGQKQRIAIARAVLK--------NPAVLLLDEATSALDSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN-CDI 604 (643)
Q Consensus 535 G~~LSgGQrQRiaLARAll~--------~~~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~-~D~ 604 (643)
...|||||+|+++|||||.. +|++|+|||||++||+.+-..+.+.|..+. .++||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 36799999999999999995 899999999999999999999999998874 57899999996665544 445
Q ss_pred EEEEeC
Q 006496 605 IAVLEQ 610 (643)
Q Consensus 605 I~vl~~ 610 (643)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555543
No 464
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=5.1e-08 Score=104.28 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=70.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEEC---CeeCCCCCHHHH
Q 006496 396 GHIELEDVHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID---GRDIRSHHLRSL 472 (643)
Q Consensus 396 ~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~id---G~di~~~~~~~l 472 (643)
+.++.++++..|... ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 468999999999643 46788886 999999999999999999999999999999999998884 677776655443
Q ss_pred ----hcccEEEecCC
Q 006496 473 ----RRHIALVSQEP 483 (643)
Q Consensus 473 ----r~~i~~v~Q~p 483 (643)
++.+++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999854
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.63 E-value=1.1e-07 Score=100.37 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=78.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCC
Q 006496 423 IEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDK 501 (643)
Q Consensus 423 i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~ 501 (643)
.+++..+.|+||+||||||+++.|++.+++ .+|.|..-+.++.-. .....+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~--------------------- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLIN--------------------- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEE---------------------
Confidence 357899999999999999999999997764 456665433321100 000000000
Q ss_pred CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHH
Q 006496 502 IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALE 581 (643)
Q Consensus 502 ~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~ 581 (643)
..++|..+.. --=++++||-.+||++++||+. |+++.....++
T Consensus 174 --------------------------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-- 216 (343)
T TIGR01420 174 --------------------------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA-- 216 (343)
T ss_pred --------------------------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH--
Confidence 1112221111 1235788999999999999997 88887654443
Q ss_pred HHcCCceEEEEccCcchhhhcCEEEE
Q 006496 582 RLMVERTSVVVAHRLSTIQNCDIIAV 607 (643)
Q Consensus 582 ~~~~~~TvI~ItHrl~~i~~~D~I~v 607 (643)
...+.+++...|..+.....+|++-
T Consensus 217 -a~tGh~v~~T~Ha~~~~~~~~Rl~~ 241 (343)
T TIGR01420 217 -AETGHLVFGTLHTNSAAQTIERIID 241 (343)
T ss_pred -HHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 4568899999999877666666543
No 466
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.62 E-value=0.00018 Score=69.78 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006496 70 PEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYMGEYLTK 149 (643)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (643)
.+.+.+.....+.+...++..++|++.|..+|....++. ..+..|+++.++..+....++.+..+.-.++-.
T Consensus 7 ~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~--------~~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~ 78 (237)
T PF13748_consen 7 RHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV--------WQALMYAALVLLMWAIGAARRIYDTRVFSRIYA 78 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH--------HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHH
Confidence 344555555666677788889999999999998765432 122334444444555555565555554445444
Q ss_pred HHHHHHHHHHHcCCccccccCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006496 150 RIRENMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTFSSITIAFTMSLIISWRLALVIIAVQP 229 (643)
Q Consensus 150 ~lr~~l~~~il~~~~~~f~~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~ 229 (643)
++-..++-+--+ ++.+.+.+..|.+- ..++-|++-.-++.++..++.+++++++++.++.++++..++.+.
T Consensus 79 ~la~~vi~~qr~--------~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~ 149 (237)
T PF13748_consen 79 ELAVPVILSQRQ--------QGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILA 149 (237)
T ss_pred HHhHHHHHHHHH--------hCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333211 24567788888844 445666777778888999999999999999999878777776554
Q ss_pred HHHHHHHHHHH
Q 006496 230 LVIVCLYGKEV 240 (643)
Q Consensus 230 l~~~~~~~~~~ 240 (643)
++..+...+.+
T Consensus 150 ~~~~i~~~f~~ 160 (237)
T PF13748_consen 150 LFLLILPRFAR 160 (237)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 467
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.61 E-value=8.4e-08 Score=101.24 Aligned_cols=89 Identities=22% Similarity=0.202 Sum_probs=67.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCCC--CC-cEEEECCeeCCCCCHHHHhcccEEEecCCC-----CCcccHHHHHh
Q 006496 424 EAKKSTALVGQSGSGKSTIIGLIERFYDP--LK-GVVKIDGRDIRSHHLRSLRRHIALVSQEPA-----LFAGTIRENIT 495 (643)
Q Consensus 424 ~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~--~~-G~I~idG~di~~~~~~~lr~~i~~v~Q~p~-----lf~gTireNi~ 495 (643)
++|..++|+||+||||||++++|++.+.+ .. +.|.....++ ++..+.++...++++|... -|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 23 4666655555 5777777777888888643 58889999998
Q ss_pred cCCCC----CC-CHHHHHHHHHH
Q 006496 496 YGASD----KI-DESEIIEAGKA 513 (643)
Q Consensus 496 ~g~~~----~~-~~e~i~~al~~ 513 (643)
..|+. +. +.|.+..|++.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 76421 22 45556678877
No 468
>PRK01889 GTPase RsgA; Reviewed
Probab=98.59 E-value=5.5e-08 Score=103.00 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=74.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHh
Q 006496 416 FKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENIT 495 (643)
Q Consensus 416 L~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~ 495 (643)
++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++....+. ..++++.+++|++++|+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhhc
Confidence 4556666889999999999999999999999999999999999987543332 3456799999999999887788877
Q ss_pred cCCCCC-C--CHHHHHHHHHHhccH
Q 006496 496 YGASDK-I--DESEIIEAGKAANAH 517 (643)
Q Consensus 496 ~g~~~~-~--~~e~i~~al~~~~l~ 517 (643)
+..... . ...++.+..+.|...
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~ 286 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFR 286 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCC
Confidence 652110 1 113555666666554
No 469
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.58 E-value=9.2e-07 Score=104.11 Aligned_cols=54 Identities=31% Similarity=0.363 Sum_probs=47.2
Q ss_pred HHHHHccCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCcchhhh
Q 006496 548 IARAVLKNPAVLLLDEATSAL-DSQSEKVVQEALERLM-VERTSVVVAHRLSTIQN 601 (643)
Q Consensus 548 LARAll~~~~IliLDE~TSaL-D~~te~~i~~~i~~~~-~~~TvI~ItHrl~~i~~ 601 (643)
++|++..+|+++++|||++.| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 6888888988887764 47899999999988754
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.57 E-value=7.4e-08 Score=92.77 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=57.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCC--CCc-ccHH
Q 006496 415 IFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPA--LFA-GTIR 491 (643)
Q Consensus 415 vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~--lf~-gTir 491 (643)
..+-+.+.+++|+.++|+|++||||||++++|+++++|..|.|.+.+.+--.++ .+..+.++.|.+. .+. -|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 345566789999999999999999999999999999999999999775433221 2345666666543 222 3666
Q ss_pred HHHh
Q 006496 492 ENIT 495 (643)
Q Consensus 492 eNi~ 495 (643)
+++.
T Consensus 91 ~~l~ 94 (186)
T cd01130 91 DLLR 94 (186)
T ss_pred HHHH
Confidence 6654
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=6.1e-08 Score=103.69 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=64.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCc---EEEECCeeCCCCCHHHH------hcccEEEecCCC
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKG---VVKIDGRDIRSHHLRSL------RRHIALVSQEPA 484 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G---~I~idG~di~~~~~~~l------r~~i~~v~Q~p~ 484 (643)
.+++++ |++.+||+++|+|++|+|||||+++|.|+++++.+ .|-.+|.++.++..+.+ |..++++||+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 579999 99999999999999999999999999999998763 34456666666554544 557899999987
Q ss_pred CCcc-cHHHHHh
Q 006496 485 LFAG-TIRENIT 495 (643)
Q Consensus 485 lf~g-TireNi~ 495 (643)
.+.. ++.+|+.
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 7643 6666654
No 472
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.55 E-value=7.8e-07 Score=93.48 Aligned_cols=171 Identities=26% Similarity=0.370 Sum_probs=115.6
Q ss_pred EEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHh-ccCCCCCcEEEECCeeCCCCCHHHHhcccEEEec
Q 006496 403 VHFAYPARPNVMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIE-RFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQ 481 (643)
Q Consensus 403 vsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~-gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q 481 (643)
|+|..|.+ -.+.+ +-||+| .+.|||..=-|||||+++|. |.|+---| ||... + +...
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-----------V-VT~~ 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-----------V-VTDP 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-----------E-EECC
Confidence 67777653 13454 579999 99999999999999999886 56665445 45420 1 1111
Q ss_pred CCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q 006496 482 EPALFAGTIRENITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLL 561 (643)
Q Consensus 482 ~p~lf~gTireNi~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliL 561 (643)
+.. .| .+.| -...+.+.+..||..||.|.||.--. -.|=||---|=-.|..||=..+++||+
T Consensus 285 ~av----ki----------rAED---GR~V~~vDISpFI~~LP~g~dT~~Fs-T~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 285 DAV----KI----------RAED---GRSVEGVDISPFINNLPGGKDTTCFS-TENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred Cce----EE----------EecC---CceEeCccchHHHhhCCCCCCCCccc-ccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 110 00 1111 12345677889999999999998433 347899999999999999999999999
Q ss_pred eccCCCCCHH-----HHHHH----------HHHHHHH---cCCceEEEEccCcchhhhcCEEEEEeCCEE
Q 006496 562 DEATSALDSQ-----SEKVV----------QEALERL---MVERTSVVVAHRLSTIQNCDIIAVLEQGRV 613 (643)
Q Consensus 562 DE~TSaLD~~-----te~~i----------~~~i~~~---~~~~TvI~ItHrl~~i~~~D~I~vl~~G~I 613 (643)
||=|||-.-. -++.| .+.++.+ +.-.|++++.--=..+.-||+|++||+=+.
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 9999997553 23333 1112333 323455555444556888999999997554
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.51 E-value=1.1e-07 Score=95.37 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHccCCCEEEeeccCCC------CCHHHHHHHHHHHHHHcC--CceEEEEccCc
Q 006496 551 AVLKNPAVLLLDEATSA------LDSQSEKVVQEALERLMV--ERTSVVVAHRL 596 (643)
Q Consensus 551 All~~~~IliLDE~TSa------LD~~te~~i~~~i~~~~~--~~TvI~ItHrl 596 (643)
+..++|+++|+| |+++ .|+.....+.+.+.+..+ ++|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 335799999999 7654 688777777777766543 68999999976
No 474
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.50 E-value=2e-07 Score=90.53 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCCCCCCCHHHH
Q 006496 428 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGASDKIDESEI 507 (643)
Q Consensus 428 ~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~~~~~~~e~i 507 (643)
+++|+|++|||||||++.+.+.+.+..| +.+-..|........+....++++|++.+. +..+.. .+...+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~-~~~~~~~ 73 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG-------VETGGC-PHTAIRE 73 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh-------hhcCCC-ccceecc
Confidence 7899999999999999999999887655 555556666666666667789999988752 111111 1111122
Q ss_pred HHHHHHhccHHHHHhcccccccccCCCCCCCChhH
Q 006496 508 IEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQ 542 (643)
Q Consensus 508 ~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQ 542 (643)
..+...+.+.+++..+|++..+.|+..|.++|.--
T Consensus 74 ~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 74 DASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 22334555667777778778888888887776554
No 475
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=2.5e-06 Score=79.17 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhh-cCEEEEEeCCEE
Q 006496 536 LQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQN-CDIIAVLEQGRV 613 (643)
Q Consensus 536 ~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~-~D~I~vl~~G~I 613 (643)
...|.|+-=.=-+.|.+- +..|+|||||-|+|-+.-.-.+...|+.+.+ +.-+|++||.+=.+.- --+|+-++.|-+
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 357899887767777754 5689999999999999888888888877654 5668999998754322 357888887765
Q ss_pred EEEcChhHH
Q 006496 614 VEEGSHQSL 622 (643)
Q Consensus 614 ve~G~~~eL 622 (643)
. .-++++.
T Consensus 207 ~-~~~fe~t 214 (233)
T COG3910 207 E-ERDFEET 214 (233)
T ss_pred c-ccchHHH
Confidence 3 3345443
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.41 E-value=4.2e-07 Score=88.48 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHH-----HhcCCCCCC
Q 006496 428 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIREN-----ITYGASDKI 502 (643)
Q Consensus 428 ~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireN-----i~~g~~~~~ 502 (643)
.+||+|+||||||||++.|.+++ ..|.+ .++++|.+...-+.+++ ..++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~-------------------~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV-------------------VIISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe-------------------EEEEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 23333 34444433322222111 122211223
Q ss_pred CHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHH
Q 006496 503 DESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQ 571 (643)
Q Consensus 503 ~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~ 571 (643)
+.+.+.+.++.... |- .+.-...+.|.|++++-.+ .+.+++++|+|.+.+..++.
T Consensus 60 ~~~~~~~~l~~l~~---------~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKN---------GK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHC---------CC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 33344333333221 21 1222234677777765544 56889999999999988763
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=3.6e-07 Score=99.16 Aligned_cols=140 Identities=15% Similarity=0.167 Sum_probs=82.1
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCC
Q 006496 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGA 498 (643)
Q Consensus 419 isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~ 498 (643)
.++.+++|+.+++|||+|+||||++..|++.+.+..|.. ++++|++|+ |.-+..||+.+..
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~A 309 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIYG 309 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHHH
Confidence 344456789999999999999999999999887766642 478999998 5566788887521
Q ss_pred -----CCC--CCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCC-----CEEEeeccCC
Q 006496 499 -----SDK--IDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNP-----AVLLLDEATS 566 (643)
Q Consensus 499 -----~~~--~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~-----~IliLDE~TS 566 (643)
+.. .+..+.. . .+..+.+.....|..-|. |.-- ..+.-+.+++.++ .+|+||..+.
T Consensus 310 eilGVpv~~~~~~~Dl~--~-------aL~~L~d~d~VLIDTaGr--~~~d-~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 310 KILGVPVHAVKDAADLR--L-------ALSELRNKHIVLIDTIGM--SQRD-RMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHhCCCeeccCCchhHH--H-------HHHhccCCCeEEeCCCCc--Chhh-HHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 000 1122221 1 223444444555665442 2111 1233333444444 6899999887
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEccC
Q 006496 567 ALDSQSEKVVQEALERLM-VERTSVVVAHR 595 (643)
Q Consensus 567 aLD~~te~~i~~~i~~~~-~~~TvI~ItHr 595 (643)
.-| +.+.++... .+.+-+++|+=
T Consensus 378 ~~~------l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 GDT------LNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred HHH------HHHHHHHhccCCCCEEEEeCC
Confidence 622 222222211 24566777763
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.38 E-value=1.1e-07 Score=105.05 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=92.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHH--hccCCCCCcEEEECCeeCCCCCHHHHhcc---cEEEecCCCCCcccHHHHHhc
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLI--ERFYDPLKGVVKIDGRDIRSHHLRSLRRH---IALVSQEPALFAGTIRENITY 496 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL--~gl~~~~~G~I~idG~di~~~~~~~lr~~---i~~v~Q~p~lf~gTireNi~~ 496 (643)
-+++|..+.|.|++|||||||..-+ .|..+.-+..++|... -++++++++ +++-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 5889999999999999999999865 3444444555666542 344555444 3332222110 011111
Q ss_pred CCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHH--HHHccCCCEEEeeccCCCCCHHHHH
Q 006496 497 GASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIA--RAVLKNPAVLLLDEATSALDSQSEK 574 (643)
Q Consensus 497 g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLA--RAll~~~~IliLDE~TSaLD~~te~ 574 (643)
- . ..........++..++++++..++ ..+|+||+||+.|+ .++..+++.. ....+
T Consensus 88 ~-~-~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 88 L-D-ASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred E-e-cCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 1 0 001111112334455555555544 35899999999999 6666654433 34455
Q ss_pred HHHHHHHHHc-CCceEEEEccCcch--------h-h-hcCEEEEEe
Q 006496 575 VVQEALERLM-VERTSVVVAHRLST--------I-Q-NCDIIAVLE 609 (643)
Q Consensus 575 ~i~~~i~~~~-~~~TvI~ItHrl~~--------i-~-~~D~I~vl~ 609 (643)
.+.+.++.+. .++|+|+++|..+. + . -||.|+.|+
T Consensus 145 ~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5666655543 47999999998753 1 2 379999887
No 479
>PRK08149 ATP synthase SpaL; Validated
Probab=98.35 E-value=4.8e-07 Score=96.70 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=59.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCC---cEEEECCeeCCCCCHHHHh----cccEEEec
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLK---GVVKIDGRDIRSHHLRSLR----RHIALVSQ 481 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~---G~I~idG~di~~~~~~~lr----~~i~~v~Q 481 (643)
.+++++ +++.+||+++|+|+||+|||||++.|.|..+++. |.|-.+|.++.++..+.++ +++++|..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence 579999 9999999999999999999999999999999987 9999999999888766665 56666654
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=4.7e-07 Score=87.18 Aligned_cols=56 Identities=29% Similarity=0.312 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCC
Q 006496 425 AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEP 483 (643)
Q Consensus 425 ~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p 483 (643)
.|+.++|+||||||||||+++|.+...+ .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3789999999999999999999998876 5888888888777777778888888874
No 481
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.31 E-value=1.3e-05 Score=94.33 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHccCCCEEEeeccCCCCC-HHHHHHHHHHHHHHcC-CceEEEEccCcch----------hhhcCEEEEEeC
Q 006496 551 AVLKNPAVLLLDEATSALD-SQSEKVVQEALERLMV-ERTSVVVAHRLST----------IQNCDIIAVLEQ 610 (643)
Q Consensus 551 All~~~~IliLDE~TSaLD-~~te~~i~~~i~~~~~-~~TvI~ItHrl~~----------i~~~D~I~vl~~ 610 (643)
.+-.+|.++++|||...|| +...+.+.+.++...+ +..++++||.++. +.+|+.-+.|-|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4456899999999999999 7788888888877644 6789999999866 445666566644
No 482
>PLN02796 D-glycerate 3-kinase
Probab=98.29 E-value=2.6e-07 Score=95.46 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=53.0
Q ss_pred cceeeeeEEE---eCCcE-----EEEEcCCCCCHHHHHHHHhccCCCC---CcEEEECCeeCCCCCHHHHhc
Q 006496 414 MIFKGFSINI---EAKKS-----TALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGRDIRSHHLRSLRR 474 (643)
Q Consensus 414 ~vL~~isl~i---~~Ge~-----vaIvG~sGsGKSTL~~lL~gl~~~~---~G~I~idG~di~~~~~~~lr~ 474 (643)
.+++++++.+ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788898887 67887 9999999999999999999999874 588999999988777777766
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.27 E-value=7.9e-07 Score=84.65 Aligned_cols=53 Identities=30% Similarity=0.436 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhc-ccEEEecCC
Q 006496 425 AKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRR-HIALVSQEP 483 (643)
Q Consensus 425 ~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~-~i~~v~Q~p 483 (643)
+||.++|+|+|||||||++++|.+++.+ +.+||.++.. ...+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcc
Confidence 6999999999999999999999999877 6899988743 233333 244555543
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.26 E-value=6.1e-07 Score=85.84 Aligned_cols=78 Identities=27% Similarity=0.272 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCC------------CCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHH
Q 006496 426 KKSTALVGQSGSGKSTIIGLIERFYD------------PLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIREN 493 (643)
Q Consensus 426 Ge~vaIvG~sGsGKSTL~~lL~gl~~------------~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireN 493 (643)
|++++|+||||||||||++.|.+.++ |..|+ ++|.+..-++.+.+.+.+ +++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999764 33343 366666556666666553 57777777778777
Q ss_pred HhcCCCCCCCHHHHHHHHHH
Q 006496 494 ITYGASDKIDESEIIEAGKA 513 (643)
Q Consensus 494 i~~g~~~~~~~e~i~~al~~ 513 (643)
. +| .+.+.++++++.
T Consensus 76 ~-y~----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG----TPKSPVEEALAA 90 (180)
T ss_pred e-eC----CcHHHHHHHHHC
Confidence 4 55 345566666654
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.24 E-value=2.8e-06 Score=103.95 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=36.9
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc-CCCCCcEEEECCe
Q 006496 419 FSINIEAKKSTALVGQSGSGKSTIIGLIERF-YDPLKGVVKIDGR 462 (643)
Q Consensus 419 isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl-~~~~~G~I~idG~ 462 (643)
+++..+.++.+||+|++|+|||||++.+.+. .+..+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 4667788999999999999999999999554 4556899999874
No 486
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.22 E-value=8.5e-06 Score=88.10 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=113.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHH
Q 006496 413 VMIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRE 492 (643)
Q Consensus 413 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTire 492 (643)
..+++++ +++.+||+++|+|++|+|||||++.|.|..+++.|.+...|..-+++. ++.+. .... .. +.-|+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~--~~~~-~~-l~~tv-- 221 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH--DLGE-EG-LKRSV-- 221 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH--Hhcc-cc-cceEE--
Confidence 3579999 999999999999999999999999999999998887776555444322 11100 0000 00 00010
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeecc--CCCCCH
Q 006496 493 NITYGASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEA--TSALDS 570 (643)
Q Consensus 493 Ni~~g~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~--TSaLD~ 570 (643)
+.....++..-+++..+.-.+...|+... .|.|-.+==. +++ | .|+|+=-= =+.+.|| +.+.|+
T Consensus 222 -vv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~D--slT-----r--~A~A~REi--sl~~ge~P~~~Gypp 287 (440)
T TIGR01026 222 -VVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMD--SVT-----R--FAMAQREI--GLAAGEPPATKGYTP 287 (440)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEe--ChH-----H--HHHHHHHH--HHhcCCCCcccccCh
Confidence 01111122334566666666666677664 4766544211 122 1 22221100 0124453 568999
Q ss_pred HHHHHHHHHHHHHcC-Cc-------eEEEEccCcchhhhcCEEEEEeCCEEEEEcChhHH
Q 006496 571 QSEKVVQEALERLMV-ER-------TSVVVAHRLSTIQNCDIIAVLEQGRVVEEGSHQSL 622 (643)
Q Consensus 571 ~te~~i~~~i~~~~~-~~-------TvI~ItHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 622 (643)
..-..+-+.+++... ++ ||++-+|++. =.-+|++.-+.+|+|+-.++-++.
T Consensus 288 ~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 288 SVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence 888777777766543 46 7888899873 445799999999999988775443
No 487
>PRK15494 era GTPase Era; Provisional
Probab=98.21 E-value=8.4e-07 Score=93.58 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCc-------EEEEEcCCCCCHHHHHHHHhccC
Q 006496 392 EKIIGHIELEDVHFAYPARPNVMIFKGFSINIEAKK-------STALVGQSGSGKSTIIGLIERFY 450 (643)
Q Consensus 392 ~~~~~~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge-------~vaIvG~sGsGKSTL~~lL~gl~ 450 (643)
+...|.+++++++|+||. ..+.++.+++++++|+ +++|+|++|+|||||++.|.|--
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345788999999999994 3468999999999999 99999999999999999998753
No 488
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.20 E-value=7.1e-07 Score=81.33 Aligned_cols=73 Identities=29% Similarity=0.383 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHhccCCC-------------CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHh
Q 006496 429 TALVGQSGSGKSTIIGLIERFYDP-------------LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENIT 495 (643)
Q Consensus 429 vaIvG~sGsGKSTL~~lL~gl~~~-------------~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~ 495 (643)
++|+||||||||||++.|.+.+++ ..|+ ++|++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999754 3444 58888888888888764 567888888889888 4
Q ss_pred cCCCCCCCHHHHHHHH
Q 006496 496 YGASDKIDESEIIEAG 511 (643)
Q Consensus 496 ~g~~~~~~~e~i~~al 511 (643)
+| ...+.+.+++
T Consensus 76 yg----~~~~~i~~~~ 87 (137)
T cd00071 76 YG----TSKAAVEEAL 87 (137)
T ss_pred ec----CcHHHHHHHH
Confidence 56 3445555544
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.20 E-value=1.3e-06 Score=93.84 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=73.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCCHHHHHHHHhccCCC-CCcEEEE---CCeeCCCCCHHHHh---cccEEE-----ec
Q 006496 414 MIFKGFSINIEAKKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKI---DGRDIRSHHLRSLR---RHIALV-----SQ 481 (643)
Q Consensus 414 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~-~~G~I~i---dG~di~~~~~~~lr---~~i~~v-----~Q 481 (643)
.+++++ |++.+||+++|+|+||+|||||+..|+|..++ ..|.|.+ +|.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999999854 4466766 55777777666665 235555 88
Q ss_pred CCC------CCcccHHHHHhcCCCC----CCCHHHHHHHHHHhcc
Q 006496 482 EPA------LFAGTIRENITYGASD----KIDESEIIEAGKAANA 516 (643)
Q Consensus 482 ~p~------lf~gTireNi~~g~~~----~~~~e~i~~al~~~~l 516 (643)
+|. ....+|.|.++.-... .-+..++.++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 774 2234788888643111 1134567777777776
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.18 E-value=2.9e-06 Score=83.34 Aligned_cols=69 Identities=28% Similarity=0.350 Sum_probs=48.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc---cH--HHHHhcCC
Q 006496 424 EAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG---TI--RENITYGA 498 (643)
Q Consensus 424 ~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g---Ti--reNi~~g~ 498 (643)
+++..|+|+|+||||||||++.|.+.+. + ..+.+++||.+.++. +. +.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------~------------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------D------------ESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------C------------CceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4678999999999999999999999872 1 247889999987754 33 33444443
Q ss_pred CCCCCHHHHHHHHHH
Q 006496 499 SDKIDESEIIEAGKA 513 (643)
Q Consensus 499 ~~~~~~e~i~~al~~ 513 (643)
+..++.+.+.+.++.
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 333455555555443
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.18 E-value=3.2e-06 Score=80.82 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEE-----------CCeeCCCCCHHHHh-----cccEEEecCCCCCcc
Q 006496 426 KKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI-----------DGRDIRSHHLRSLR-----RHIALVSQEPALFAG 488 (643)
Q Consensus 426 Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~i-----------dG~di~~~~~~~lr-----~~i~~v~Q~p~lf~g 488 (643)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.++..++.+++. ..+..+.|.+.++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 77777777766653 347888887655443
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.18 E-value=1e-06 Score=86.41 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=36.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcc
Q 006496 424 EAKKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAG 488 (643)
Q Consensus 424 ~~Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~g 488 (643)
++|+.++|+|+||||||||++.|.+++++ ..+++++||.++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 57999999999999999999999999864 126677777776643
No 493
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.17 E-value=2.8e-06 Score=84.64 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.1
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHh-ccCCCCCcEEEECC
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLIE-RFYDPLKGVVKIDG 461 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL~-gl~~~~~G~I~idG 461 (643)
-+++|+.+.|.|++|||||||+..++ ....+.++.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999998654 33445455666665
No 494
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.16 E-value=5.6e-06 Score=93.93 Aligned_cols=109 Identities=25% Similarity=0.286 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCCCc--------EEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcC
Q 006496 426 KKSTALVGQSGSGKSTIIGLIERFYDPLKG--------VVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYG 497 (643)
Q Consensus 426 Ge~vaIvG~sGsGKSTL~~lL~gl~~~~~G--------~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g 497 (643)
.+.+.|+||+|+||||+++++.++..+..| -|.+||.++. .+...+ .|-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhcC
Confidence 456999999999999999999999865444 4888887653 222221 122233
Q ss_pred CCCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHH
Q 006496 498 ASDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQ 577 (643)
Q Consensus 498 ~~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~ 577 (643)
...+-..+...+.++..++.+...+ . -..+||| +|+||| +..||......+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g-------~----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTG-------L----VTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcC-------c----hhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 1100001122333444444332211 1 1246777 999999 7999999988888
Q ss_pred HHHHH
Q 006496 578 EALER 582 (643)
Q Consensus 578 ~~i~~ 582 (643)
+.+++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 88864
No 495
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=81.84 Aligned_cols=160 Identities=26% Similarity=0.275 Sum_probs=108.4
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccC-CCCCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHHhcCC
Q 006496 420 SINIEAKKSTALVGQSGSGKSTIIGLIERFY-DPLKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENITYGA 498 (643)
Q Consensus 420 sl~i~~Ge~vaIvG~sGsGKSTL~~lL~gl~-~~~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi~~g~ 498 (643)
-+-|++| ...|+|++=-|||||++++.+=. +---| ||... +|. .+ .+.
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVT---------d~---~la- 285 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVT---------DV---KLA- 285 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEe---------hh---hhh-
Confidence 3578999 99999999999999999997543 22222 33210 000 00 000
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHhcccccccccCCCCCCCChhHHHHHHHHHHHccCCCEEEeeccCCCCCHHH------
Q 006496 499 SDKIDESEIIEAGKAANAHDFIAGLYEGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPAVLLLDEATSALDSQS------ 572 (643)
Q Consensus 499 ~~~~~~e~i~~al~~~~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRiaLARAll~~~~IliLDE~TSaLD~~t------ 572 (643)
.++-++. ....-..+.-||+.||+|-||+---.| .=||--.|=-.|=||+=..++++++||=|||+.--.
T Consensus 286 --kaeae~g-r~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlak 361 (554)
T COG3044 286 --KAEAEEG-RCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAK 361 (554)
T ss_pred --hhhcccc-eeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHH
Confidence 0111111 112223466799999999999987777 479999999999999999999999999999985421
Q ss_pred ----H---HHHHHHHHHHcCC-ceEEEEccCcch-hhhcCEEEEEeCCEEE
Q 006496 573 ----E---KVVQEALERLMVE-RTSVVVAHRLST-IQNCDIIAVLEQGRVV 614 (643)
Q Consensus 573 ----e---~~i~~~i~~~~~~-~TvI~ItHrl~~-i~~~D~I~vl~~G~Iv 614 (643)
+ ..+.+.+.+..++ -++|+||--+.- +..+||++||++=|=+
T Consensus 362 e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 362 ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1 1233334444444 688888887765 5679999999986544
No 496
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.15 E-value=3.3e-06 Score=103.92 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCCCChhHHHHHH----HHHH--------HccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEEccCcc
Q 006496 535 GLQLSGGQKQRIA----IARA--------VLKNPAVLLLDEATSALDSQSEKVVQEALERLMVERTSVVVAHRLS 597 (643)
Q Consensus 535 G~~LSgGQrQRia----LARA--------ll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~ItHrl~ 597 (643)
...|||||||+++ +|+| +..+|++++|||||+++|+.+...+.+.|.++ +.++|+++|++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 4679999999996 5766 45799999999999999999999999999887 789999999974
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.13 E-value=1e-05 Score=81.00 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=52.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcc-CCC------CCcEEEECCeeCCCCCHHHHhcccEEEecCCCCCcccHHHHH
Q 006496 422 NIEAKKSTALVGQSGSGKSTIIGLIERF-YDP------LKGVVKIDGRDIRSHHLRSLRRHIALVSQEPALFAGTIRENI 494 (643)
Q Consensus 422 ~i~~Ge~vaIvG~sGsGKSTL~~lL~gl-~~~------~~G~I~idG~di~~~~~~~lr~~i~~v~Q~p~lf~gTireNi 494 (643)
-+++|+.+.|+|++|||||||+..++.. ..| .++.++||+.+ .++.+.+++.. |.......++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 4889999999999999999999877633 233 36788998865 34455544432 11111234567777
Q ss_pred hcCCCCCCCHHHHHHHH
Q 006496 495 TYGASDKIDESEIIEAG 511 (643)
Q Consensus 495 ~~g~~~~~~~e~i~~al 511 (643)
.+.. ..+.+++.+.+
T Consensus 89 ~~~~--~~~~~~l~~~l 103 (235)
T cd01123 89 YVAR--AYNSDHQLQLL 103 (235)
T ss_pred EEEe--cCCHHHHHHHH
Confidence 7652 24444544433
No 498
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.13 E-value=5.7e-06 Score=98.76 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=65.7
Q ss_pred CCCChhHHHHHH------HHHHHccC--CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEEccCcchhhhcCEEE
Q 006496 536 LQLSGGQKQRIA------IARAVLKN--PAVLLLDEATSALDSQSEKVVQEALERLMV-ERTSVVVAHRLSTIQNCDIIA 606 (643)
Q Consensus 536 ~~LSgGQrQRia------LARAll~~--~~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~ItHrl~~i~~~D~I~ 606 (643)
..|||||+=.++ ||..+-.+ -+.++|||||.+||+++-..+.++|..... +++||+|||.-.....+|.++
T Consensus 814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i 893 (908)
T COG0419 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893 (908)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEE
Confidence 589999998655 45555567 699999999999999999999999988766 499999999999999999999
Q ss_pred EEeCC
Q 006496 607 VLEQG 611 (643)
Q Consensus 607 vl~~G 611 (643)
.++..
T Consensus 894 ~V~k~ 898 (908)
T COG0419 894 RVKKD 898 (908)
T ss_pred EEEec
Confidence 98754
No 499
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.10 E-value=2.1e-05 Score=71.47 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=39.3
Q ss_pred HHHHHHHHHHccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEEccCcc
Q 006496 543 KQRIAIARAVLKNPAVLLLDEATSALDSQSEKVVQEALERLM------VERTSVVVAHRLS 597 (643)
Q Consensus 543 rQRiaLARAll~~~~IliLDE~TSaLD~~te~~i~~~i~~~~------~~~TvI~ItHrl~ 597 (643)
++.....++...++.++++||+-.. +......+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666667777889999999998765 4555566777776653 4678888888654
No 500
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.10 E-value=4.3e-06 Score=80.96 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=39.5
Q ss_pred ccCCCCCCCChhHHHHHH--HHHHHcc-CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 006496 530 WCGDRGLQLSGGQKQRIA--IARAVLK-NPAVLLLDEATSALDSQSEKVVQEALERLMVE 586 (643)
Q Consensus 530 ~vge~G~~LSgGQrQRia--LARAll~-~~~IliLDE~TSaLD~~te~~i~~~i~~~~~~ 586 (643)
.++.+...+++||+|++. +++.+-. +++++ ||||+|.+.-+.+.+.|.+++++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345555668999999977 6676644 34443 99999999888888888877664
Done!