BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006497
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 8/290 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN ++ L H ++R + +S +
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SV ++F S SDD TVK+W+
Sbjct: 111 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 168
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 227
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D +
Sbjct: 228 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKT 285
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ W ++ H ++VW +A+ P G + S S+D T K W RN
Sbjct: 286 VKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 8/290 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN ++ L H ++ + +S +
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SV ++F S SDD TVK+W+
Sbjct: 152 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 209
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V+ V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGV 268
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
+ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D +
Sbjct: 269 AFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 326
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ W ++ H ++VW +A+ P G + S S+D T K W RN
Sbjct: 327 VKLW--NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 8/290 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN ++ L H ++R + +S +
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SV ++F S SDD TVK+W+
Sbjct: 234 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-R 291
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV 350
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D +
Sbjct: 351 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 408
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ W ++ H ++VW +A+ P + S S+D T K W RN
Sbjct: 409 VKLW--NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 137/289 (47%), Gaps = 8/289 (2%)
Query: 68 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 127
L + S+ V ++P G+ + + S LWN ++ L H ++ + +S +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187
+ S D +K W N + + H SVR ++F S SDD TVK+W+
Sbjct: 71 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 247
Q ++LTGH V V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D ++
Sbjct: 188 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 245
Query: 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
W ++ H ++V +A+ P G + S S+D T K W RN
Sbjct: 246 KLW--NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 8/287 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN + + L H ++ + +S +
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDG 356
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SVR ++F S SDD TVK+W+
Sbjct: 357 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 414
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 473
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D +
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 531
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ W ++ H ++VW +A+ P G + S S+D T K W
Sbjct: 532 VKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 8/290 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+N V + P G+ + + S LWN ++ L H ++ + +S +
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N +++ + H SV ++F S SDD TVK+W+
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 373
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V+ V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 432
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
++ + + +AS D+ +KL++ R + L++ GH V +A+ P + S S D +
Sbjct: 433 AFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 490
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ W ++ H ++V +A+ P G + S S+D T K W RN
Sbjct: 491 VKLW--NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 8/290 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN ++ L H ++ + + +
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SV ++F S SDD TVK+W+
Sbjct: 275 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 332
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 391
Query: 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P ++ S S D +
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT 449
Query: 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ W ++ H ++V +A+ P G + S S+D T K W RN
Sbjct: 450 VKLW--NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 4/202 (1%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L + S+ V ++P G+ + + S LWN ++ L H ++ + +S +D
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD 438
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S D +K W N + + H SVR ++F S SDD TVK+W+
Sbjct: 439 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 496
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
Q ++LTGH V+ V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 555
Query: 247 KWNQNGNWVLTASKDQIIKLYD 268
++ +G + +AS D+ +KL++
Sbjct: 556 AFSPDGQTIASASSDKTVKLWN 577
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 247
+E L H V+ V + P + S D VKLW+ ++G+ L + GH + V V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307
++ +G + +AS D+ +KL++ R + L++ GH V +A+ P + S S D ++
Sbjct: 65 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 122
Query: 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
W ++ H ++VW +A+ P G + S S+D T K W RN
Sbjct: 123 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 22/245 (8%)
Query: 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188
MVS + IK W + + H +SV+D+SF + SCS D T+K+WDF
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 248
+ R++ GH +V SV P +VS +D +K+W+ ++G + +F GH+ V V+
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 249 NQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEE----------- 296
NQ+G + + S DQ ++++ + A KE ++ R HR V ++W P
Sbjct: 243 NQDGTLIASCSNDQTVRVW-VVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 297 --------YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348
+ +SGS D +I W V + + HDN V + +H G + S ++D
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDK 360
Query: 349 TTKFW 353
T + W
Sbjct: 361 TLRVW 365
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 21/257 (8%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
S+ + + +G+ L + S LW+ Q F + HDH + S+ N + +VS
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
IK W+ + H+E VR + + SCS+D TV+VW A + +
Sbjct: 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 271
Query: 194 LTGHGWDVKSVDWHPTKS--------------------LLVSGGKDSLVKLWDAKSGREL 233
L H V+ + W P S L+SG +D +K+WD +G L
Sbjct: 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331
Query: 234 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 293
+ GH N V V ++ G ++L+ + D+ ++++D + + +++ H VT+L +H
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391
Query: 294 HEEYFVSGSLDGSIFHW 310
Y V+GS+D ++ W
Sbjct: 392 -APYVVTGSVDQTVKVW 407
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Query: 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 249
E+ +L+GH V V +HP S++VS +D+ +K+WD ++G + GH + V + ++
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309
+G + + S D IKL+D + + + + GH +V++++ P + ++ VS S D +I
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKM 218
Query: 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W V V+ H V + + G L+ S SND T + W
Sbjct: 219 WEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 20/216 (9%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
++ V P G +++ S+ +W Q+ H +R + + + + S +
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 135 GGAIKYWQNNMNNVKANKSAHKESVRDLSFC------------RTDLK--------FCSC 174
++ W KA H+ V +S+ ++ K S
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 175 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 234
S D T+K+WD + +L GH V+ V +H ++S D +++WD K+ R +
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270
+ + H++ V + +++ +V+T S DQ +K+++ R
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 37 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 273
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 274 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 35 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 271
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + + ++ H + V A HP ++ S + ND T K W
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 19 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 256 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 19 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 256 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 18 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 254
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 255 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 19 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 256 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 30 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 266
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 267 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 14 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 250
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 251 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 13 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 250 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 12 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 248
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 249 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 13 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + + ++ H + V A HP ++ S + ND T K W
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 9 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 245
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + + ++ H + V A HP ++ S + ND T K W
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 6/285 (2%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
+++ V ++P G L + S +W FE + H I + WS + N +VS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
D +K W + H V +F S S D +V++WD ++
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNG 252
L H V +V ++ SL+VS D L ++WD SG+ L + N V VK++ NG
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHEEYFVSGSLDGSIFHW 310
++L A+ D +KL+D K L+++ GH+ + + + ++ VSGS D ++ W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 311 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
+ + ++ H + V A HP ++ S + ND T K W
Sbjct: 268 NLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 12/261 (4%)
Query: 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI 117
++ KF T ++ ++ I+ V W+ L++ S +W+ S L+ H + +
Sbjct: 55 AYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 118 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 177
++ N +VSG +++ W AH + V + F R S S D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 178 TTVKVWDFARCQEERSLTGHGWD---VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 234
++WD A Q ++L D V V + P +++ D+ +KLWD G+ L
Sbjct: 174 GLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 235 SFHGHKNMVLCVKWN---QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 291
++ GHKN C+ N G W+++ S+D ++ +++++ + ++ +GH V + A H
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 292 PFHEEYFVSGSL--DGSIFHW 310
P E S +L D +I W
Sbjct: 292 P-TENIIASAALENDKTIKLW 311
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 193 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 252
+L GH V SV + P L S D L+K+W A G+ + GHK + V W+ +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312
N +++AS D+ +K++D+ + K L++ +GH V ++P VSGS D S+ W V
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 139
Query: 313 ----------GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H P +H D G L+ S S D + W
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRD-----------GSLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L S +W FE + H I
Sbjct: 16 YALKFTLAGHTK---AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K W
Sbjct: 253 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 6/285 (2%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
+++ V ++P G L + S +W FE + H I + WS + N +VS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
D +K W + H V +F S S D +V++WD ++
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNG 252
L H V +V ++ SL+VS D L ++WD SG+ L + N V VK++ NG
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHEEYFVSGSLDGSIFHW 310
++L A+ D +KL+D K L+++ GH+ + + + ++ VSGS D ++ W
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 311 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
+ + ++ H + V A HP ++ S + ND T K W
Sbjct: 268 NLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 12/261 (4%)
Query: 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI 117
++ KF T ++ ++ I+ V W+ L++ S +W+ S L+ H + +
Sbjct: 55 AYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 118 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 177
++ N +VSG +++ W AH + V + F R S S D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 178 TTVKVWDFARCQEERSLTGHGWD---VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 234
++WD A Q ++L D V V + P +++ D+ +KLWD G+ L
Sbjct: 174 GLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK 231
Query: 235 SFHGHKNMVLCVKWN---QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 291
++ GHKN C+ N G W+++ S+D ++ +++++ + ++ +GH V + A H
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 292 PFHEEYFVSGSL--DGSIFHW 310
P E S +L D +I W
Sbjct: 292 P-TENIIASAALENDKTIKLW 311
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 193 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 252
+L GH V SV + P L S D L+K+W A G+ + GHK + V W+ +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312
N +++AS D+ +K++D+ + K L++ +GH V ++P VSGS D S+ W V
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 139
Query: 313 ----------GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H P +H D G L+ S S D + W
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRD-----------GSLIVSSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 16 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K +
Sbjct: 253 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIR 118
+A KF K +++ V ++P G L + S +W FE + H I
Sbjct: 16 YALKFTLAGHTK---AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ WS + N +VS D +K W + H V +F S S D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
+V++WD + ++L H V +V ++ SL+VS D L ++WD SG+ L +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 239 HKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA--WHPFHE 295
N V VK++ NG ++L A+ D +KL+D K L+++ GH+ + + +
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFW 353
++ VSGS D ++ W + V+ H + V A HP ++ S + ND T K +
Sbjct: 253 KWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 23/295 (7%)
Query: 76 NRVL---WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 132
N+VL W RR+++ SQ G+ +W+ + N E + + + ++ + + G
Sbjct: 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG 124
Query: 133 DDGGAIKYW------QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ NM K + + H + SF +D++ + S D T +WD
Sbjct: 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 244
Q +S GHG DV +D P+++ VSGG D +WD +SG+ + +F H++ V
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244
Query: 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL- 303
V++ +G+ + S D +LYD+RA +E+ + ++ + ++ +SG L
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-----SIIFGASSVDFSLSGRLL 299
Query: 304 -----DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
D +I W V + +V I H+N V L P G CSGS DHT + W
Sbjct: 300 FAGYNDYTINVWDV-LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 8/206 (3%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V + +C+ + S S D V VWD +E ++T V + + P+ +
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA 122
Query: 215 SGGKDSLVKLW------DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
GG D+ ++ + + S H N + + + +LTAS D L+D
Sbjct: 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 327
+ + + L+SF GH DV L P FVSG D W + V+ H++
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-RSGQCVQAFETHES 241
Query: 328 TVWDLAWHPIGYLLCSGSNDHTTKFW 353
V + ++P G SGS+D T + +
Sbjct: 242 DVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
I V ++P G+ L TG++ +W+ ++ MILQ H+ I S+ + + + +VSG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 135 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWD------FAR 187
++ W S ++ V ++ D K+ + S D V+VWD R
Sbjct: 186 DRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 188 CQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW---------DAK---SGRELC 234
E S TGH V SV + +VSG D VKLW D+K SG
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289
++ GHK+ VL V QN ++L+ SKD+ + +D ++ L +GHR V ++A
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 118/268 (44%), Gaps = 29/268 (10%)
Query: 112 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171
+ D IRS+ +S + ++ +G + I+ W + H++ + L + + K
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 172 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSG 230
S S D TV++WD Q +L+ V +V P ++ G D V++WD+++G
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 231 -------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE------- 276
E S GHK+ V V + ++G V++ S D+ +KL++++
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 277 -----SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331
++ GH+ V ++A ++EY +SGS D + W P + + H N+V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVIS 357
Query: 332 LA------WHPIGYLLCSGSNDHTTKFW 353
+A P + +GS D + W
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------------FEMILQAHDHAIRSMV 121
S+ V++T G+ +++GS LWN Q+ N E+ H + S+
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL------KFCSCS 175
+ ND +++SG + +W N H+ SV ++ F + S
Sbjct: 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377
Query: 176 DDTTVKVWDFAR 187
D ++W + +
Sbjct: 378 GDCKARIWKYKK 389
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 116/269 (43%), Gaps = 37/269 (13%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
+ V+ + G+ ++GS GE LW+ + H + S+ +S ++ +VS
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 135 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF---------CSCSDDTTVKVWDF 185
IK W N + K S E RD C ++F S S D TVKVW+
Sbjct: 493 DRTIKLW-NTLGECKYTISEGGEGHRDWVSC---VRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 186 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VL 244
+ C+ +L GH V +V P SL SGGKD +V LWD G++L S + + L
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Query: 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-----------------GHRKDV-- 285
C ++ N W L A+ + IK++D+ + +E + RK +
Sbjct: 609 C--FSPNRYW-LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGH 314
T+L W F SG DG I W +G
Sbjct: 666 TSLNWSADGSTLF-SGYTDGVIRVWGIGR 693
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 17/210 (8%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212
+ H V D+ S S D +++WD A R GH DV SV +
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 213 LVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGN--WVLTASKDQII 264
+VS +D +KLW+ C + GH++ V CV+++ N +++AS D+ +
Sbjct: 487 IVSASRDRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 265 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 324
K++++ K + GH V+ +A P SG DG + W + +++++
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGK---KLYSL 599
Query: 325 HDNTVW-DLAWHPIGYLLCSGSNDHTTKFW 353
N+V L + P Y LC+ + +H K W
Sbjct: 600 EANSVIHALCFSPNRYWLCAAT-EHGIKIW 628
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 10/192 (5%)
Query: 171 FCSCSDDTTVKVW-----DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225
S S D ++ +W D A +R LTGH V+ V +SG D ++LW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---ESFRGHR 282
D +G F GH VL V ++ + +++AS+D+ IKL++ + E GHR
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 283 KDVTALAWHP-FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341
V+ + + P + VS S D ++ W + + + + H V +A P G L
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLC 576
Query: 342 CSGSNDHTTKFW 353
SG D W
Sbjct: 577 ASGGKDGVVLLW 588
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 9/280 (3%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG--DDGGA 137
W R L++ SQ G+ +W+ + N + + + ++ + N++ G D+ +
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT 195
I + NV+ ++ + LS CR D + + S DTT +WD Q+ + T
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH DV S+ P L VSG D+ KLWD + G +F GH++ + + + NGN
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE--EYFVSGSLDGSIFHWLVG 313
T S D +L+D+RA +EL ++ H + + F + ++G D + W
Sbjct: 253 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-DA 310
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + + HDN V L G + +GS D K W
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+++T S LW+ ++ H + S+ + + VSG + K W
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVK 202
+ + H+ + + F F + SDD T +++D R +E H +
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGIT 285
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
SV + + LL++G D +WDA GH N V C+ +G V T S D
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 263 IIKLYD 268
+K+++
Sbjct: 346 FLKIWN 351
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---------------- 232
+ R+L GH + ++ W LLVS +D + +WD+ + +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 233 --------------LCSFH----------------GHKNMVLCVKWNQNGNWVLTASKDQ 262
+CS + GH + C ++ + N ++T+S D
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 175
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
L+DI ++ +F GH DV +L+ P FVSG+ D S W V E +
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQTF 233
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H++ + + + P G +GS+D T + +
Sbjct: 234 TGHESDINAICFFPNGNAFATGSDDATCRLF 264
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 9/280 (3%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG--DDGGA 137
W R L++ SQ G+ +W+ + N + + + ++ + N++ G D+ +
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT 195
I + NV+ ++ + LS CR D + + S DTT +WD Q+ + T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH DV S+ P L VSG D+ KLWD + G +F GH++ + + + NGN
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE--EYFVSGSLDGSIFHWLVG 313
T S D +L+D+RA +EL ++ H + + F + ++G D + W
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-DA 299
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + + HDN V L G + +GS D K W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+++T S LW+ ++ H + S+ + + VSG + K W
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVK 202
+ + H+ + + F F + SDD T +++D R +E H +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGIT 274
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
SV + + LL++G D +WDA GH N V C+ +G V T S D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 263 IIKLYD 268
+K+++
Sbjct: 335 FLKIWN 340
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---------------- 232
+ R+L GH + ++ W LLVS +D + +WD+ + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 233 --------------LCSFH----------------GHKNMVLCVKWNQNGNWVLTASKDQ 262
+CS + GH + C ++ + N ++T+S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
L+DI ++ +F GH DV +L+ P FVSG+ D S W V E +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQTF 222
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H++ + + + P G +GS+D T + +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 9/280 (3%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG--DDGGA 137
W R L++ SQ G+ +W+ + N + + + ++ + N++ G D+ +
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT 195
I + NV+ ++ + LS CR D + + S DTT +WD Q+ + T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH DV S+ P L VSG D+ KLWD + G +F GH++ + + + NGN
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE--EYFVSGSLDGSIFHWLVG 313
T S D +L+D+RA +EL ++ H + + F + ++G D + W
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-DA 299
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + + HDN V L G + +GS D K W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+++T S LW+ ++ H + S+ + + VSG + K W
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVK 202
+ + H+ + + F F + SDD T +++D R +E H +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGIT 274
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
SV + + LL++G D +WDA GH N V C+ +G V T S D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 263 IIKLYD 268
+K+++
Sbjct: 335 FLKIWN 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---------------- 232
+ R+L GH + ++ W LL+S +D + +WD+ + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 233 --------------LCSFH----------------GHKNMVLCVKWNQNGNWVLTASKDQ 262
+CS + GH + C ++ + N ++T+S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
L+DI ++ +F GH DV +L+ P FVSG+ D S W V E +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQTF 222
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H++ + + + P G +GS+D T + +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 9/280 (3%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG--DDGGA 137
W R L++ SQ G+ +W+ + N + + + ++ + N++ G D+ +
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT 195
I + NV+ ++ + LS CR D + + S DTT +WD Q+ + T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH DV S+ P L VSG D+ KLWD + G +F GH++ + + + NGN
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE--EYFVSGSLDGSIFHWLVG 313
T S D +L+D+RA +EL ++ H + + F + ++G D + W
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-DA 299
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + + HDN V L G + +GS D K W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+++T S LW+ ++ H + S+ + + VSG + K W
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVK 202
+ + H+ + + F F + SDD T +++D R +E H +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGIT 274
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
SV + + LL++G D +WDA GH N V C+ +G V T S D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 263 IIKLYD 268
+K+++
Sbjct: 335 FLKIWN 340
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---------------- 232
+ R+L GH + ++ W LLVS +D + +WD+ + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 233 --------------LCSFH----------------GHKNMVLCVKWNQNGNWVLTASKDQ 262
+CS + GH + C ++ + N ++T+S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
L+DI ++ +F GH DV +L+ P FVSG+ D S W V E +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQTF 222
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H++ + + + P G +GS+D T + +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 9/280 (3%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG--DDGGA 137
W R L++ SQ G+ +W+ + N + + + ++ + N++ G D+ +
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT 195
I + NV+ ++ + LS CR D + + S DTT +WD Q+ + T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH DV S+ P L VSG D+ KLWD + G +F GH++ + + + NGN
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE--EYFVSGSLDGSIFHWLVG 313
T S D +L+D+RA +EL ++ H + + F + ++G D + W
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-DA 299
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + + HDN V L G + +GS D K W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+++T S LW+ ++ H + S+ + + VSG + K W
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVK 202
+ + H+ + + F F + SDD T +++D R +E H +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGIT 274
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
SV + + LL++G D +WDA GH N V C+ +G V T S D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 263 IIKLYD 268
+K+++
Sbjct: 335 FLKIWN 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---------------- 232
+ R+L GH + ++ W LL+S +D + +WD+ + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 233 --------------LCSFH----------------GHKNMVLCVKWNQNGNWVLTASKDQ 262
+CS + GH + C ++ + N ++T+S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
L+DI ++ +F GH DV +L+ P FVSG+ D S W V E +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV-REGMCRQTF 222
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H++ + + + P G +GS+D T + +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 173 SCSDDTTVKVW----DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228
SC D +++W D C+ S GH V+ V W P + L S D+ +W
Sbjct: 33 SCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91
Query: 229 SGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES---FRGHRK 283
C + GH+N V V W +GN + T S+D+ + ++++ E E H +
Sbjct: 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151
Query: 284 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLL 341
DV + WHP +E S S D ++ + E V + H++TVW LA+ P G L
Sbjct: 152 DVKHVVWHP-SQELLASASYDDTVKLYR-EEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 342 CSGSNDHTTKFWCRNRPGD 360
S S+D T + W + PG+
Sbjct: 210 ASCSDDRTVRIWRQYLPGN 228
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 126/317 (39%), Gaps = 38/317 (11%)
Query: 78 VLWTPTGRRLITGSQSGEFTLW--NGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD 134
+ W P G L + +W G S+ + +L + H +R + WS N++ S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 135 GGAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 192
W+ N ++ + + H+ V+ +++ + +CS D +V VW+ E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 193 S---LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGHKNMVLCVK 247
L H DVK V WHP++ LL S D VKL+ + +C + GH++ V +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 248 WNQNGNWVLTASKDQIIKLY------------------DIRAMKELESFRGHRKDVTALA 289
++ +G + + S D+ ++++ + + L F H + + +A
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIA 259
Query: 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQ-------VEIHNVHDNTVWDLAWHPIG-YLL 341
W + D + PQ +H H V +AW+P LL
Sbjct: 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319
Query: 342 CSGSNDHTTKFWCRNRP 358
S S+D FW RP
Sbjct: 320 ASCSDDGEVAFWKYQRP 336
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVS 131
++ +V W+P G L + S +W +FE + L+ H++ ++S+ W+ + N + +
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 132 GDDGGAIKYWQNNMNNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVW----- 183
++ W+ + + S +H + V+ + + + S S D TVK++
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD----------AKSGRE- 232
D+ C +L GH V S+ + P+ L S D V++W A SG +
Sbjct: 183 DWVCCA---TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239
Query: 233 ----LCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLY--DIRAMKELESF------- 278
+C+ G H + + W Q + TA D I+++ D + + +F
Sbjct: 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299
Query: 279 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
+ H +DV +AW+P S S DG + W
Sbjct: 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 27/207 (13%)
Query: 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144
+R+++GS+ +W+ ++ +L H A+R + ++ +VSG +K W
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPE 267
Query: 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GW 199
H V L F + S S DT+++VWD +LTGH G
Sbjct: 268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVL 256
++K ++LVSG DS VK+WD K+G+ L + G H++ V C+++N+N +V+
Sbjct: 326 ELKD-------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVI 376
Query: 257 TASKDQIIKLYD------IRAMKELES 277
T+S D +KL+D IR + LES
Sbjct: 377 TSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 48/267 (17%)
Query: 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 141
G R+++GS +W+ + L H VWS DN ++SG +K W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMRDNIIISGSTDRTLKVW 184
Query: 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV 201
H +VR + + + S S D T++VWD Q L GH V
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN------------ 249
+ V + + +VSG D +VK+WD ++ L + GH N V ++++
Sbjct: 243 RCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 250 ------QNGNWV--------------------LTASKDQIIKLYDIRAMKELESFRGHRK 283
+ GN + ++ + D +K++DI+ + L++ +G K
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 284 DVTALAWHPFHEEYFVSGSLDGSIFHW 310
+A+ F++ + ++ S DG++ W
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 23/196 (11%)
Query: 167 TDLKFC-----SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221
T L+FC S SDD T+KVW + R+L GH V S ++++SG D
Sbjct: 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRT 180
Query: 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 281
+K+W+A++G + + +GH + V C+ ++ V++ S+D ++++DI + L GH
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE--IHNV--HDNTVWDLAWHPI 337
V A+ + VSG+ D + W P+ E +H + H N V+ L +
Sbjct: 239 ---VAAVRCVQYDGRRVVSGAYDFMVKVW-----DPETETCLHTLQGHTNRVYSLQFD-- 288
Query: 338 GYLLCSGSNDHTTKFW 353
G + SGS D + + W
Sbjct: 289 GIHVVSGSLDTSIRVW 304
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143
GRR+++G+ +W+ ++ LQ H + + S+ + +VSG +I+ W
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDV 306
Query: 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HGWD 200
N + H+ + D S + D+TVK+WD Q ++L G H
Sbjct: 307 ETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 230
V + ++ K+ +++ D VKLWD K+G
Sbjct: 365 VTCLQFN--KNFVITSSDDGTVKLWDLKTG 392
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 9/263 (3%)
Query: 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
PT ++T SG LWN ++ +Q + +R+ + NW++ G D I+ +
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82
Query: 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWD 200
N + AH + +R ++ T S SDD TVK+W++ E++ GH
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 201 VKSVDWHPTK-SLLVSGGKDSLVKLWD-AKSGRELCSFHGHKNMVLCVKWN--QNGNWVL 256
V V ++P S SG D VK+W +S G + V V + + +++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 257 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316
TAS D IK++D + + + GH +V+ +HP +SGS DG++ W T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIW--NSST 259
Query: 317 PQVE-IHNVHDNTVWDLAWHPIG 338
+VE NV W +A HP G
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTG 282
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 118/267 (44%), Gaps = 14/267 (5%)
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187
W+++ G ++ W + + VR F SDD ++V+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCV 246
++ H ++S+ HPTK ++SG D VKLW+ ++ L +F GH++ V+CV
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 247 KWN-QNGNWVLTASKDQIIKLYDI-RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSL 303
+N ++ + + D+ +K++ + ++ G + V + ++P ++ Y ++ S
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 304 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 363
D +I W ++ + H + V +HP ++ SGS D T K W N
Sbjct: 207 DLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW--NSSTYKVE 263
Query: 364 DKFNMGQNQGY-------GEQNAVFAG 383
N+G + + G +N + +G
Sbjct: 264 KTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 7/224 (3%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+I GS ++N + + +AH IRS+ +++SG D +K W N N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWEN 128
Query: 147 N--VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVK 202
N ++ H+ V ++F D F S D TVKVW + +LT G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 203 SVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VD++P K +++ D +K+WD ++ + + GH + V ++ +++ S+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304
D +K+++ K ++ + +A HP + +++ D
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VK +D+HPT+ +++ V+LW+ ++ E+ S + V K+ NW++ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D I++++ +++ F H + ++A HP + Y +SGS D ++ W + +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 321 IHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 379
H++ V +A++P SG D T K W + T GQ +G +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDY 192
Query: 380 VFAGRMPGNFPLPEGP 395
+PLP+ P
Sbjct: 193 ---------YPLPDKP 199
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 9/263 (3%)
Query: 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
PT ++T SG LWN ++ +Q + +R+ + NW++ G D I+ +
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82
Query: 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWD 200
N + AH + +R ++ T S SDD TVK+W++ E++ GH
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 201 VKSVDWHPTK-SLLVSGGKDSLVKLWD-AKSGRELCSFHGHKNMVLCVKWN--QNGNWVL 256
V V ++P S SG D VK+W +S G + V V + + +++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 257 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316
TAS D IK++D + + + GH +V+ +HP +SGS DG++ W T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIW--NSST 259
Query: 317 PQVE-IHNVHDNTVWDLAWHPIG 338
+VE NV W +A HP G
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTG 282
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 118/267 (44%), Gaps = 14/267 (5%)
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187
W+++ G ++ W + + VR F SDD ++V+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCV 246
++ H ++S+ HPTK ++SG D VKLW+ ++ L +F GH++ V+CV
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 247 KWN-QNGNWVLTASKDQIIKLYDI-RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSL 303
+N ++ + + D+ +K++ + ++ G + V + ++P ++ Y ++ S
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 304 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 363
D +I W ++ + H + V +HP ++ SGS D T K W N
Sbjct: 207 DLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW--NSSTYKVE 263
Query: 364 DKFNMGQNQGY-------GEQNAVFAG 383
N+G + + G +N + +G
Sbjct: 264 KTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 7/224 (3%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+I GS ++N + + +AH IRS+ +++SG D +K W N N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWEN 128
Query: 147 N--VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVK 202
N ++ H+ V ++F D F S D TVKVW + +LT G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 203 SVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VD++P K +++ D +K+WD ++ + + GH + V ++ +++ S+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304
D +K+++ K ++ + +A HP + +++ D
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VK +D+HPT+ +++ V+LW+ ++ E+ S + V K+ NW++ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D I++++ +++ F H + ++A HP + Y +SGS D ++ W + +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 321 IHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 379
H++ V +A++P SG D T K W + T GQ +G +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDY 192
Query: 380 VFAGRMPGNFPLPEGP 395
+PLP+ P
Sbjct: 193 ---------YPLPDKP 199
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 9/263 (3%)
Query: 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
PT ++T SG LWN ++ +Q + +R+ + NW++ G D I+ +
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82
Query: 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWD 200
N + AH + +R ++ T S SDD TVK+W++ E++ GH
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 201 VKSVDWHPTK-SLLVSGGKDSLVKLWD-AKSGRELCSFHGHKNMVLCVKWN--QNGNWVL 256
V V ++P S SG D VK+W +S G + V V + + +++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 257 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316
TAS D IK++D + + + GH +V+ +HP +SGS DG++ W T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIW--NSST 259
Query: 317 PQVE-IHNVHDNTVWDLAWHPIG 338
+VE NV W +A HP G
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTG 282
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 16/283 (5%)
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187
W+++ G ++ W + + VR F SDD ++V+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCV 246
++ H ++S+ HPTK ++SG D VKLW+ ++ L +F GH++ V+CV
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 247 KWN-QNGNWVLTASKDQIIKLYDI-RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSL 303
+N ++ + + D+ +K++ + ++ G + V + ++P ++ Y ++ S
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 304 DGSIFHWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 362
D +I W ++T V H + V +HP ++ SGS D T K W N
Sbjct: 207 DLTIKIW--DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW--NSSTYKV 262
Query: 363 RDKFNMGQNQGY-------GEQNAVFAGRMPGNFPLPEGPTTP 398
N+G + + G +N + +G G L G P
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 114/264 (43%), Gaps = 20/264 (7%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+I GS ++N + + +AH IRS+ +++SG D +K W N N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWEN 128
Query: 147 N--VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVK 202
N ++ H+ V ++F D F S D TVKVW + +LT G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 203 SVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VD++P K +++ D +K+WD ++ + + GH + V ++ +++ S+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D +K+++ K ++ + +A HP + +++ D +G++ P
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT-- 306
Query: 321 IHNVHDNTVWDLAWHPIGYLLCSG 344
L+ P+G L+ SG
Sbjct: 307 -----------LSLDPVGKLVWSG 319
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VK +D+HPT+ +++ V+LW+ ++ E+ S + V K+ NW++ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D I++++ +++ F H + ++A HP + Y +SGS D ++ W + +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 321 IHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 379
H++ V +A++P SG D T K W + T GQ +G +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--TPNFTLTTGQERGVNYVDY 192
Query: 380 VFAGRMPGNFPLPEGP 395
+PLP+ P
Sbjct: 193 ---------YPLPDKP 199
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 171 FCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPT-KSLLVSGGKDSLV 222
S SDD T+ +WD + +E + TGH V+ V WH +SL S D +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 223 KLWDAKS---GRELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMK-ELES 277
+WD +S + S H V C+ +N ++L T S D+ + L+D+R +K +L S
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHE-TPQ---------VEIHNV 324
F H+ ++ + W P +E S D + W +G E +P+ + IH
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Query: 325 HDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
H + D +W+P +++CS S D+ + W
Sbjct: 373 HTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDA----KSGRELCS---FHG 238
C + L GH + + W+P S L+S D + LWD K G+ + + F G
Sbjct: 166 ECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R+ K S H +V L+++P+
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 354 CRNRPGD 360
++ G+
Sbjct: 346 DLSKIGE 352
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 22/141 (15%)
Query: 67 SLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEM-ILQAHDHAIRSMVWS- 123
S++ + +N + + P ++ TGS LW+ ++ ++ ++H I + WS
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 124 HNDNWMVSGDDGGAIKYWQNNMNNVKANKS----------------AHKESVRDLSFCRT 167
HN+ + S + W +++ + +S H + D S+
Sbjct: 328 HNETILASSGTDRRLNVW--DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 168 D-LKFCSCSDDTTVKVWDFAR 187
+ CS S+D ++VW A
Sbjct: 386 EPWVICSVSEDNIMQVWQMAE 406
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 69 NKNRCSINRVLWTPTG---------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 119
+KN R+L TG R +ITGS +W+ + L H A+
Sbjct: 159 DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH 218
Query: 120 MVWSHNDNWMVSGDDGGAIKYWQN---NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD 176
+ N+ MV+ +I W ++ H+ +V + F D S S
Sbjct: 219 L--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 177 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 236
D T+KVW+ + C+ R+L GH + + + L+VSG D+ ++LWD + G L
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 237 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---------LESFRGHRKDVTA 287
GH+ +V C++++ +++ + D IK++D+ A + L + H V
Sbjct: 333 EGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390
Query: 288 LAWHPFHEEYFVSGSLDGSIFHW 310
L + F VS S D +I W
Sbjct: 391 LQFDEFQ---IVSSSHDDTILIW 410
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
D K S D T+K+WD + +R LTGH V + + + ++++G DS V++WD
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDV 200
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKD 284
+G L + H VL +++N NG V T SKD+ I ++D+ + ++ R GHR
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRFN-NGMMV-TCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344
V + F ++Y VS S D +I W V N H + L + L+ SG
Sbjct: 259 VNVV---DFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACLQYR--DRLVVSG 312
Query: 345 SNDHTTKFW 353
S+D+T + W
Sbjct: 313 SSDNTIRLW 321
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 104/279 (37%), Gaps = 58/279 (20%)
Query: 124 HNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF------------------- 164
++D +VSG IK W N K + H SV L +
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 200
Query: 165 ------------CRTDLKF-------CSCSDDTTVKVWDFAR---CQEERSLTGHGWDVK 202
C L +CS D ++ VWD A R L GH V
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 262
VD+ +VS D +K+W+ + + + +GHK + C+++ V++ S D
Sbjct: 261 VVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDN 316
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW-LVGHETPQVEI 321
I+L+DI L GH + V + F + VSG+ DG I W LV P+
Sbjct: 317 TIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 322 HNV-------HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ H V+ L + + + S S+D T W
Sbjct: 374 GTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 410
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-- 142
R +++GS LW+ + +L+ H+ +R + ++ +VSG G IK W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLV 364
Query: 143 -----NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185
++ + S R + + S S D T+ +WDF
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 9/263 (3%)
Query: 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
PT ++T SG +WN ++ +Q + +R+ + NW++ G D I+ +
Sbjct: 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82
Query: 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWD 200
N + AH + +R ++ T S SDD TVK+W++ E++ GH
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 201 VKSVDWHPTK-SLLVSGGKDSLVKLWD-AKSGRELCSFHGHKNMVLCVKWN--QNGNWVL 256
V V ++P S SG D VK+W +S G + V V + + +++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 257 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316
TAS D IK++D + + + GH +V+ +HP +SGS DG++ W T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIW--NSST 259
Query: 317 PQVE-IHNVHDNTVWDLAWHPIG 338
+VE NV W +A HP G
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTG 282
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 16/236 (6%)
Query: 175 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL- 233
SDD ++V+++ ++ H ++S+ HPTK ++SG D VKLW+ ++ L
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 234 CSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDI-RAMKELESFRGHRKDVTALAWH 291
+F GH++ V+CV +N ++ + + D+ +K++ + ++ G + V + ++
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 292 PFHEE-YFVSGSLDGSIFHWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 349
P ++ Y ++ S D +I W ++T V H + V +HP ++ SGS D T
Sbjct: 194 PLPDKPYMITASDDLTIKIW--DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 350 TKFWCRNRPGDTARDKFNMGQNQGY-------GEQNAVFAGRMPGNFPLPEGPTTP 398
K W N N+G + + G +N + +G G L G P
Sbjct: 252 LKIW--NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 114/264 (43%), Gaps = 20/264 (7%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+I GS ++N + + +AH IRS+ +++SG D +K W N N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWEN 128
Query: 147 N--VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVK 202
N ++ H+ V ++F D F S D TVKVW + +LT G V
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 203 SVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VD++P K +++ D +K+WD ++ + + GH + V ++ +++ S+
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D +K+++ K ++ + +A HP + +++ D +G++ P
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT-- 306
Query: 321 IHNVHDNTVWDLAWHPIGYLLCSG 344
L+ P+G L+ SG
Sbjct: 307 -----------LSLDPVGKLVWSG 319
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
VK +D+HPT+ +++ V++W+ ++ E+ S + V K+ NW++ S
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D I++++ +++ F H + ++A HP + Y +SGS D ++ W + +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 321 IHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 379
H++ V +A++P SG D T K W + T GQ +G +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--TPNFTLTTGQERGVNYVDY 192
Query: 380 VFAGRMPGNFPLPEGP 395
+PLP+ P
Sbjct: 193 ---------YPLPDKP 199
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 171 FCSCSDDTTVKVWDF-ARCQEERSL------TGHGWDVKSVDWHPT-KSLLVSGGKDSLV 222
S SDD T+ +WD A +E R + TGH V+ V WH +SL S D +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 223 KLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMK-ELES 277
+WD ++ H H V C+ +N ++L T S D+ + L+D+R +K +L S
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHE--TPQVE--------IHNV 324
F H+ ++ + W P +E S D + W +G E T E IH
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378
Query: 325 HDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
H + D +W+P +++CS S D+ + W
Sbjct: 379 HTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 236 FHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDI-------RAMKELESFRGHRKDVTA 287
GH+ + WN N N ++L+AS D I L+DI R + F GH V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG-YLLCSG 344
+AWH HE F S + D + W + H V H V L+++P ++L +G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 345 SNDHTTKFW 353
S D T W
Sbjct: 299 SADKTVALW 307
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA----KSGRELCS---FHG 238
CQ + L GH + + W+P L+S D + LWD K R + + F G
Sbjct: 172 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 231
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R K + H +V L+++P+
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 354 CRNRPGD 360
++ G+
Sbjct: 352 DLSKIGE 358
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 171 FCSCSDDTTVKVWDF-ARCQEERSL------TGHGWDVKSVDWHPT-KSLLVSGGKDSLV 222
S SDD T+ +WD A +E R + TGH V+ V WH +SL S D +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 223 KLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMK-ELES 277
+WD ++ H H V C+ +N ++L T S D+ + L+D+R +K +L S
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHE--TPQVE--------IHNV 324
F H+ ++ + W P +E S D + W +G E T E IH
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 380
Query: 325 HDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
H + D +W+P +++CS S D+ + W
Sbjct: 381 HTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 236 FHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDI-------RAMKELESFRGHRKDVTA 287
GH+ + WN N N ++L+AS D I L+DI R + F GH V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG-YLLCSG 344
+AWH HE F S + D + W + H V H V L+++P ++L +G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 345 SNDHTTKFW 353
S D T W
Sbjct: 301 SADKTVALW 309
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA----KSGRELCS---FHG 238
CQ + L GH + + W+P L+S D + LWD K R + + F G
Sbjct: 174 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 233
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R K + H +V L+++P+
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 354 CRNRPGD 360
++ G+
Sbjct: 354 DLSKIGE 360
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 171 FCSCSDDTTVKVWDF-ARCQEERSL------TGHGWDVKSVDWHPT-KSLLVSGGKDSLV 222
S SDD T+ +WD A +E R + TGH V+ V WH +SL S D +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 223 KLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMK-ELES 277
+WD ++ H H V C+ +N ++L T S D+ + L+D+R +K +L S
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHE--TPQVE--------IHNV 324
F H+ ++ + W P +E S D + W +G E T E IH
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376
Query: 325 HDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
H + D +W+P +++CS S D+ + W
Sbjct: 377 HTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 236 FHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDI-------RAMKELESFRGHRKDVTA 287
GH+ + WN N N ++L+AS D I L+DI R + F GH V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG-YLLCSG 344
+AWH HE F S + D + W + H V H V L+++P ++L +G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 345 SNDHTTKFW 353
S D T W
Sbjct: 297 SADKTVALW 305
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA----KSGRELCS---FHG 238
CQ + L GH + + W+P L+S D + LWD K R + + F G
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R K + H +V L+++P+
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 354 CRNRPGD 360
++ G+
Sbjct: 350 DLSKIGE 356
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 17/251 (6%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
++ V+ + G+ ++GS G LW+ + H + S+ +S ++ +VSG
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 135 GGAIKYWQNNMNNVK--ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE 190
IK W N + K +H E V + F ++ SC D VKVW+ A C+
Sbjct: 149 DKTIKLW-NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250
+ + GH + +V P SL SGGKD LWD G+ L + G +++ + ++
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP 266
Query: 251 NGNWVLTASKDQIIKLYDIRA---MKELE------SFRGHRKDVTALAWHPFHEEYFVSG 301
N W L A+ IK++D+ + EL+ S + T+LAW + F +G
Sbjct: 267 NRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF-AG 324
Query: 302 SLDGSIFHWLV 312
D + W V
Sbjct: 325 YTDNLVRVWQV 335
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 14/255 (5%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
L+ H H + +V S + + +SG G ++ W H + V ++F +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 170 KFCSCSDDTTVKVWD-FARCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWD 226
+ S S D T+K+W+ C+ H V V + P S ++VS G D LVK+W+
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 286
+ + + GH + V + +G+ + KD L+D+ K L + G +
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN 260
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHW-----LVGHETPQVEIHNVHDNT---VWDLAWHPIG 338
AL + P Y++ + SI W ++ E Q I LAW G
Sbjct: 261 ALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318
Query: 339 YLLCSGSNDHTTKFW 353
L +G D+ + W
Sbjct: 319 QTLFAGYTDNLVRVW 333
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 8/192 (4%)
Query: 173 SCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
S S D T+ +W R + +R+L GH V V +SG D ++LWD
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD-IRAMKELESFRGHRKDVT 286
+G F GH VL V ++ + +++ S+D+ IKL++ + K H + V+
Sbjct: 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175
Query: 287 ALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345
+ + P VS D + W + + + H H + + P G L SG
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HIGHTGYLNTVTVSPDGSLCASGG 234
Query: 346 NDHTTKFWCRNR 357
D W N
Sbjct: 235 KDGQAMLWDLNE 246
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 17/251 (6%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
++ V+ + G+ ++GS G LW+ + H + S+ +S ++ +VSG
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 135 GGAIKYWQNNMNNVK--ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE 190
IK W N + K +H E V + F ++ SC D VKVW+ A C+
Sbjct: 126 DKTIKLW-NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250
+ + GH + +V P SL SGGKD LWD G+ L + G +++ + ++
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP 243
Query: 251 NGNWVLTASKDQIIKLYDIRA---MKELE------SFRGHRKDVTALAWHPFHEEYFVSG 301
N W L A+ IK++D+ + EL+ S + T+LAW + F +G
Sbjct: 244 NRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF-AG 301
Query: 302 SLDGSIFHWLV 312
D + W V
Sbjct: 302 YTDNLVRVWQV 312
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 14/255 (5%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
L+ H H + +V S + + +SG G ++ W H + V ++F +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 170 KFCSCSDDTTVKVWD-FARCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWD 226
+ S S D T+K+W+ C+ H V V + P S ++VS G D LVK+W+
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 286
+ + + GH + V + +G+ + KD L+D+ K L + G +
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN 237
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHW-----LVGHETPQVEIHNVHDNT---VWDLAWHPIG 338
AL + P Y++ + SI W ++ E Q I LAW G
Sbjct: 238 ALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 295
Query: 339 YLLCSGSNDHTTKFW 353
L +G D+ + W
Sbjct: 296 QTLFAGYTDNLVRVW 310
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 8/192 (4%)
Query: 173 SCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
S S D T+ +W R + +R+L GH V V +SG D ++LWD
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD-IRAMKELESFRGHRKDVT 286
+G F GH VL V ++ + +++ S+D+ IKL++ + K H + V+
Sbjct: 93 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 152
Query: 287 ALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345
+ + P VS D + W + + + H H + + P G L SG
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HIGHTGYLNTVTVSPDGSLCASGG 211
Query: 346 NDHTTKFWCRNR 357
D W N
Sbjct: 212 KDGQAMLWDLNE 223
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 195 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-------LCSFHGHKNMVLCVK 247
T H ++SV W P SLL +G DS V +W + + L GH+N V V
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSL 303
W+ +G ++ T S+D+ + +++ E + + H +DV + WHP E S S
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSY 173
Query: 304 DGSIFHWL-VGHETPQVEIHNVHDNTVW--DLAWHPIGYLLCSGSNDHTTKFW 353
D ++ W + V + N H+ TVW D + LCSGS+D T + W
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMI----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142
L TGS + L + + +F +I AH AIRS+ W + + + +G + W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 143 NNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-- 193
+ ++ A H+ V+ +++ +CS D +V +W+ EE
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146
Query: 194 --LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGHKNMV 243
L H DVK V WHP+++LL S D V++W C +GH+ V
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 130
+ V W+ G L T S+ +W +G+ + +LQ H ++ ++W ++ +
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 131 SGDDGGAIKYWQNNMNNVK--ANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFA 186
S ++ W++ ++ + A + H+ +V F +T+ + CS SDD+TV+VW +
Sbjct: 170 SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
Query: 187 RCQEERSLTGHGWDVKSV--DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 244
E+ W +++ D H + V+ G + L+ A G + VL
Sbjct: 230 GDDEDDQ---QEWVCEAILPDVHKRQVYNVAWGFNGLI----ASVG---------ADGVL 273
Query: 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 276
V +G W + A + +Y+I +K LE
Sbjct: 274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 257 TASKDQIIKL----YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312
T S D+ IKL YD + ++ H+K + ++AW P H +GS D ++ W
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAK 87
Query: 313 GH------ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
E + I H+N V +AW GY L + S D + W + G+
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S+++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+++K ++
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDE 239
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 240 VFSLAFSPNRYWLAAAT 256
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D +VK
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 239 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS------ 291
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVW 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 12/253 (4%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
L+ H + + S+N N+ VS +++ W + H + V ++F +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 170 KFCSCSDDTTVKVWDF-ARCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWD 226
+ S D ++VW+ C S H V V + P+ ++VSGG D+LVK+WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 286
+GR + GH N V V + +G+ ++ KD + +L+D+ + L +
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP-IN 241
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT------VWDLAWHPIGYL 340
+ + P Y++ + + I + + ++ VE+ H + +AW G
Sbjct: 242 QICFSP--NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGST 299
Query: 341 LCSGSNDHTTKFW 353
L SG D+ + W
Sbjct: 300 LYSGYTDNVIRVW 312
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 25/254 (9%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 134
++ V + G ++ S LWN Q+ + H + S+ +S ++ +VSG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 135 GGAIKYWQNNMNNVKA------NKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVWDFA 186
A++ W NVK ++ AH + V + F + S D VKVWD A
Sbjct: 130 DNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLC 245
+ L GH V SV P SL S KD + +LWD G L G +C
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 246 VKWNQNGNWVLTASKDQIIKLYDIR---AMKELE-SFRGHRKDV---TALAWHPFHEEYF 298
++ N W + A+ ++ I+++D+ + EL +G +K V ++AW +
Sbjct: 245 --FSPNRYW-MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLY 301
Query: 299 VSGSLDGSIFHWLV 312
SG D I W V
Sbjct: 302 -SGYTDNVIRVWGV 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250
+R L GH V V + VS D ++LW+ ++G+ F GH VL V ++
Sbjct: 60 DRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 251 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHP-FHEEYFVSGSLDGSIF 308
+ +++ +D +++++++ RG D V+ + + P VSG D +
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 309 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W + ++ H N V + P G L S D + W
Sbjct: 180 VWDLATGRLVTDLKG-HTNYVTSVTVSPDGSLCASSDKDGVARLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S+++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+++K ++
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDE 239
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 240 VFSLAFSPNRYWLAAAT 256
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D +VK
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 239 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVS------ 291
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S+++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+++K ++
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDE 239
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 240 VFSLAFSPNRYWLAAAT 256
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D +VK
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 239 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS------ 291
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVW 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S+++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+++K ++
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDE 239
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 240 VFSLAFSPNRYWLAAAT 256
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D +VK
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 239 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS------ 291
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S+++
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+++K ++
Sbjct: 118 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDE 233
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 234 VFSLAFSPNRYWLAAAT 250
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D +VK
Sbjct: 115 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + + +
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 232
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 233 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS------ 285
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 286 LAWSADGQTLFAGYTDNVIRVW 307
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 28/268 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
LQ H + S+ W+ NW+VS G + W + H V + +F
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 170 KFCSCSDDTTVKVWDFARCQEE-------RSLTGHGWDVKSVDWHPT-KSLLVSGGKDSL 221
D+ +++ + + R LTGH S + P ++ L++G D
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 222 VKLWDAKSGRELCSF-----HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-KE 274
LWD +G+ + F GH VL + N N N ++ S D ++L+D+R +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHN----VHDN- 327
+ ++ GH D+ ++ + P + F +GS DG+ +F GH Q++++N +DN
Sbjct: 242 VRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGH---QLQVYNREPDRNDNE 297
Query: 328 --TVWDLAWHPIGYLLCSGSNDHTTKFW 353
V +A+ G LL +G ++ W
Sbjct: 298 LPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 32/302 (10%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
WTP +++ SQ G +WN + ++ H + ++ N + G A
Sbjct: 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133
Query: 140 YWQNNMNNVKANKSAHKESVRDL-------SFCR----TDLKFCSCSDDTTVKVWDFARC 188
+ N+++ +A++ + R L S C+ + + + S D T +WD
Sbjct: 134 IF--NLSS-QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190
Query: 189 QEERSL-----TGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK-SGRELCSFHGHKN 241
Q +GH DV S+ + + + +SG D+ V+LWD + + R + ++HGH+
Sbjct: 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG 250
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKD-----VTALAWHPFH 294
+ VK+ +G T S D +L+D+R +L+ + R D VT++A+
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF-SIS 309
Query: 295 EEYFVSGSLDGSIFHW--LVGHETPQV-EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
+G +G + W L+ + + N H+ + L G LC+GS D K
Sbjct: 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369
Query: 352 FW 353
W
Sbjct: 370 IW 371
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 58/225 (25%)
Query: 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL---------- 233
D C R+L GH V S+DW P K+ +VS +D + +W+A + ++
Sbjct: 55 DLVCC---RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111
Query: 234 --CSFHGHKNMVLC-------------VKWNQNGNW------------------------ 254
C+F + V C + +++GN
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 255 -VLTASKDQIIKLYDIRAMKELESF-----RGHRKDVTALAWHPFHEEYFVSGSLDGSIF 308
++T S DQ L+D+ + + F GH DV +L+ + + F+SGS D ++
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 309 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W + + V ++ H+ + + + P G +GS+D T + +
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 7/210 (3%)
Query: 111 QAHDHAIRSMVW----SHNDNWMVSG--DDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 164
QAHD AI S+ W N +V+G DD + W++ +++ + H+ V +
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 165 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224
T S S D +++WD ++ +S+ D ++ + P L +G V +
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 284
+ +SG++ S +L + ++ +G ++ + + D II ++DI K L + GH
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314
+ +L + P + V+ S DG I + V H
Sbjct: 209 IRSLTFSP-DSQLLVTASDDGYIKIYDVQH 237
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
++P + L TG+ G+ ++ +S E L I S+ +S + ++ SG G I
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 199
+ + H +R L+F + SDD +K++D +L+GH
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259
V +V + P + VS D VK+WD + + +F H++ V VK+N NG+ +++
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Query: 260 KDQIIKLYD 268
DQ I +YD
Sbjct: 310 DDQEIHIYD 318
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 8/267 (2%)
Query: 85 RRLITGSQSGEFTLWN--GQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142
++TGS +W + + + L+ H + S+ SH S I+ W
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW- 107
Query: 143 NNMNNVKANKSAHKESVR--DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 200
++ N K KS V L+F + + V ++ ++E SL G
Sbjct: 108 -DLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
+ S+ + P L SG D ++ ++D +G+ L + GH + + ++ + ++TAS
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
D IK+YD++ + GH V +A+ P + +FVS S D S+ W VG T V
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTC-VH 284
Query: 321 IHNVHDNTVWDLAWHPIGYLLCSGSND 347
H + VW + ++ G + S +D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 21 QIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT-------------- 66
IR+W D + +++ A +D T+A++ P + + A H
Sbjct: 103 HIRLW--DLENGKQIKSIDAGPVDAW-TLAFS--PDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 67 -SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN 125
SL+ I + ++P G+ L +G+ G +++ + L+ H IRS+ +S +
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 126 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185
+V+ D G IK + N+ S H V +++FC D F S S D +VKVWD
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 186 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
+ H V V ++ S +VS G D + ++D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/304 (19%), Positives = 124/304 (40%), Gaps = 24/304 (7%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
++ ++ G+R+ + ++ ++ + ++AH+ + +S +D+++ +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 683
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEE 191
+K W + + H E V F L + S+D +K+WD + +
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK----------- 240
++ GH V + P LL S D ++LWD +S E S + +
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 803
Query: 241 --NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEY 297
+V C W+ +G+ ++ A+K++++ L+DI L E GH + + P+
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 862
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW---- 353
++ S + W + + H + V + + P G + S+D T + W
Sbjct: 863 VIALS-QYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Query: 354 -CRN 356
C+N
Sbjct: 921 VCKN 924
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
++ + +T G+ LI+ S+ +WN Q+ ++ + LQAH ++ D+ ++S
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQ-DSRLLSWS 1069
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
G +K W ++ + + H+ +V + KF S S D T K+W F
Sbjct: 1070 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1129
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
L GH V+ + LL +G + +++W+ G+ L
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 104/261 (39%), Gaps = 17/261 (6%)
Query: 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
++++ H A+ +S + + S ++ ++ + AH++ V +F
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLW 225
D +CS D VK+WD A + + H V + + LL +G D +KLW
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR--- 282
D + GH N V +++ + + + S D ++L+D+R+ E +S R
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 283 ------KDVTAL----AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
+DV + +W ++ V+ + + + EIH H +T+
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYC 853
Query: 333 AWHPIGYLLCSGSNDHTTKFW 353
+ P +L + + + W
Sbjct: 854 DFSPYDHLAVIALSQYCVELW 874
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 17/201 (8%)
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
++ GD+ GAIK + N V ++ HK++VR + F S S+D+ ++VW++
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW- 1039
Query: 187 RCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 245
+ + L H VK D+ + S L+S D VK+W+ +GR F H+ VL
Sbjct: 1040 QTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1097
Query: 246 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 305
+ + + S D+ K++ + L +GH V A+ SLDG
Sbjct: 1098 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-----------SLDG 1146
Query: 306 SIFHWLVGHETPQVEIHNVHD 326
+ G + ++ I NV D
Sbjct: 1147 ILLA--TGDDNGEIRIWNVSD 1165
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Query: 132 GDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188
GD G W N ++ H ++V F + + SC D T++V+
Sbjct: 595 GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG 654
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 248
++ + H +V + S + + D VK+WD+ +G+ + ++ H V C +
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 249 NQNGNWVL--TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
N +L T S D +KL+D+ + + GH V + P +E S S DG+
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGT 773
Query: 307 IFHWLV 312
+ W V
Sbjct: 774 LRLWDV 779
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
H A+R + ++ + ++S + I+ W N AH+E+V+D + D +
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVW-NWQTGDYVFLQAHQETVKDFRLLQ-DSRLL 1066
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
S S D TVKVW+ + ER T H V S + S D K+W
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 233 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
L GH V C ++ +G + T + I+++++
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 22/233 (9%)
Query: 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEF--TLWNGQSFNFEMILQAHDH 115
S K VHT +++ +N +T L+ + S +F LW+ + H +
Sbjct: 693 SATGKLVHT-YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 116 AIRSMVWSHNDNWMVSGDDGGAIKYW------QNNMNNVKANKSAHKESVRDLSFCRTDL 169
++ +S +D + S G ++ W + NVK + ++ D+ +
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI---V 808
Query: 170 KFCSCSDD---------TTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKD 219
K CS S D V ++D + TGH ++ D+ P L V
Sbjct: 809 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 868
Query: 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
V+LW+ S ++ GH + V V ++ +G+ LTAS DQ I++++ + +
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 921
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 116/312 (37%), Gaps = 43/312 (13%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
W+ G ++I +++ S I H I+ +S D+ V ++
Sbjct: 813 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 872
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHG 198
W + A+ H V + F F + SDD T++VW+ + C+ +
Sbjct: 873 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 199 WDVK-------------------------SVDWHPTKSL-----------LVSGGKDSLV 222
DV +D+ P + + G +D +
Sbjct: 933 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 992
Query: 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 282
K+ + + R S GHK V +++ +G ++++S+D +I++++ + + + H+
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQ 1051
Query: 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLL 341
+ T + + +S S DG++ W V T ++E H TV A
Sbjct: 1052 E--TVKDFRLLQDSRLLSWSFDGTVKVWNVI--TGRIERDFTCHQGTVLSCAISSDATKF 1107
Query: 342 CSGSNDHTTKFW 353
S S D T K W
Sbjct: 1108 SSTSADKTAKIW 1119
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 10/197 (5%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V+D + S S D T+++WD A + + GH DV SVD S ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGNWVLTASKDQIIKLYD 268
SG +D +K+W K G+ L + GH + V V K + + +++A D+ +K ++
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
+ + F GH ++ L P S DG I W + + + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLS--AQDE 239
Query: 329 VWDLAWHPIGYLLCSGS 345
V+ LA+ P Y L + +
Sbjct: 240 VFSLAFSPNRYWLAAAT 256
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 27/262 (10%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
+ H H ++ + + + +S ++ W HK V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS------LLVSGGKDSLVK 223
S S D T+KVW + Q +L GH V V P + ++S G D VK
Sbjct: 121 XIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
W+ + F GH + + + + +G + +A KD I L+++ A K + +
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-QD 238
Query: 284 DVTALAWHPFHEEYFVSGSLDG-SIF----HWLVGHETPQ-------VEIHNVHDNTVWD 331
+V +LA+ P + + + + G +F +LV P+ E H V
Sbjct: 239 EVFSLAFSP-NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS------ 291
Query: 332 LAWHPIGYLLCSGSNDHTTKFW 353
LAW G L +G D+ + W
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVW 313
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/304 (19%), Positives = 124/304 (40%), Gaps = 24/304 (7%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
++ ++ G+R+ + ++ ++ + ++AH+ + +S +D+++ +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEE 191
+K W + + H E V F L + S+D +K+WD + +
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK----------- 240
++ GH V + P LL S D ++LWD +S E S + +
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796
Query: 241 --NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEY 297
+V C W+ +G+ ++ A+K++++ L+DI L E GH + + P+
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW---- 353
++ S + W + + H + V + + P G + S+D T + W
Sbjct: 856 VIALS-QYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Query: 354 -CRN 356
C+N
Sbjct: 914 VCKN 917
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
++ + +T G+ LI+ S+ +WN Q+ ++ + LQAH ++ D+ ++S
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQ-DSRLLSWS 1062
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
G +K W ++ + + H+ +V + KF S S D T K+W F
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
L GH V+ + LL +G + +++W+ G+ L
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 104/261 (39%), Gaps = 17/261 (6%)
Query: 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
++++ H A+ +S + + S ++ ++ + AH++ V +F
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLW 225
D +CS D VK+WD A + + H V + + LL +G D +KLW
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR--- 282
D + GH N V +++ + + + S D ++L+D+R+ E +S R
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 283 ------KDVTAL----AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
+DV + +W ++ V+ + + + EIH H +T+
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYC 846
Query: 333 AWHPIGYLLCSGSNDHTTKFW 353
+ P +L + + + W
Sbjct: 847 DFSPYDHLAVIALSQYCVELW 867
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 17/201 (8%)
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
++ GD+ GAIK + N V ++ HK++VR + F S S+D+ ++VW++
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW- 1032
Query: 187 RCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 245
+ + L H VK D+ + S L+S D VK+W+ +GR F H+ VL
Sbjct: 1033 QTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1090
Query: 246 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 305
+ + + S D+ K++ + L +GH V A+ SLDG
Sbjct: 1091 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-----------SLDG 1139
Query: 306 SIFHWLVGHETPQVEIHNVHD 326
+ G + ++ I NV D
Sbjct: 1140 ILLA--TGDDNGEIRIWNVSD 1158
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Query: 132 GDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188
GD G W N ++ H ++V F + + SC D T++V+
Sbjct: 588 GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG 647
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 248
++ + H +V + S + + D VK+WD+ +G+ + ++ H V C +
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 249 NQNGNWVL--TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306
N +L T S D +KL+D+ + + GH V + P +E S S DG+
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGT 766
Query: 307 IFHWLV 312
+ W V
Sbjct: 767 LRLWDV 772
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
H A+R + ++ + ++S + I+ W N AH+E+V+D + D +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVW-NWQTGDYVFLQAHQETVKDFRLLQ-DSRLL 1059
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
S S D TVKVW+ + ER T H V S + S D K+W
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 233 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
L GH V C ++ +G + T + I+++++
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 22/233 (9%)
Query: 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEF--TLWNGQSFNFEMILQAHDH 115
S K VHT +++ +N +T L+ + S +F LW+ + H +
Sbjct: 686 SATGKLVHT-YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 116 AIRSMVWSHNDNWMVSGDDGGAIKYW------QNNMNNVKANKSAHKESVRDLSFCRTDL 169
++ +S +D + S G ++ W + NVK + ++ D+ +
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI---V 801
Query: 170 KFCSCSDD---------TTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKD 219
K CS S D V ++D + TGH ++ D+ P L V
Sbjct: 802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861
Query: 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
V+LW+ S ++ GH + V V ++ +G+ LTAS DQ I++++ + +
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 116/312 (37%), Gaps = 43/312 (13%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
W+ G ++I +++ S I H I+ +S D+ V ++
Sbjct: 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHG 198
W + A+ H V + F F + SDD T++VW+ + C+ +
Sbjct: 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 199 WDVK-------------------------SVDWHPTKSL-----------LVSGGKDSLV 222
DV +D+ P + + G +D +
Sbjct: 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985
Query: 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 282
K+ + + R S GHK V +++ +G ++++S+D +I++++ + + + H+
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQ 1044
Query: 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLL 341
+ T + + +S S DG++ W V T ++E H TV A
Sbjct: 1045 E--TVKDFRLLQDSRLLSWSFDGTVKVWNVI--TGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 342 CSGSNDHTTKFW 353
S S D T K W
Sbjct: 1101 SSTSADKTAKIW 1112
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 12/241 (4%)
Query: 85 RRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140
R ++ S SG LW N + HD + ++ + VSG IK
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 141 WQNNMNNVKANKSAHKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-- 197
W V ++ AH V ++ D F SCS+D + +WD RC + S G
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD-TRCPKPASQIGCSA 212
Query: 198 -GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN-W 254
G+ S+ WHP +S + V G ++ V L D KS + S H V + ++ + +
Sbjct: 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPF 272
Query: 255 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314
+ + S+D + + D ++ EL + HR V W P + + D + H +V
Sbjct: 273 LASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331
Query: 315 E 315
E
Sbjct: 332 E 332
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 14/223 (6%)
Query: 129 MVSGDDGGAIKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
++ D GA++ W+ + N K K H + V +S + + S S D +KVWD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 185 FARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGREL----CSFHGH 239
A+ S H V V P K S+ +S +D+ + LWD + + CS G+
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 240 KNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298
L W+ Q + ++ + L D ++ + S H + VT L + P +
Sbjct: 216 LPTSL--AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL 273
Query: 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341
S S D S+ ++ ++ H + V D W P+ + L
Sbjct: 274 ASLSEDCSLA--VLDSSLSELFRSQAHRDFVRDATWSPLNHSL 314
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-----CSFHGHKNMVLCVKWNQNGNWV 255
V + W + +LV+ + V+LW+ L C + H ++V V +G
Sbjct: 85 VADLTWVGERGILVASDSGA-VELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQA 142
Query: 256 LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315
++ SKD IK++D+ L S+R H VT +A P + F+S S D I W
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 316 TPQVEIHNVHDNTV-WDLAWHP 336
P +I + LAWHP
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHP 224
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 21/297 (7%)
Query: 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDN 127
+N +N V W+ +G L + + LW+ S + +LQ I S+ W N
Sbjct: 114 RNDYYLNLVDWS-SGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGN 171
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWD 184
++ G ++ W N ++H V LS+ L S S V+V +
Sbjct: 172 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 231
Query: 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHK 240
+L+GH +V + W P L SGG D+LV +W + G L +F H+
Sbjct: 232 ----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 241 NMVLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297
V V W + VL + D+ I+++++ + L + H + V ++ W P ++E
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 346
Query: 298 FVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G + W E+ H + V L P G + S + D T + W
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 21/297 (7%)
Query: 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDN 127
+N +N V W+ +G L + + LW+ S + +LQ I S+ W N
Sbjct: 103 RNDYYLNLVDWS-SGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGN 160
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWD 184
++ G ++ W N ++H V LS+ L S S V+V +
Sbjct: 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 220
Query: 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHK 240
+L+GH +V + W P L SGG D+LV +W + G L +F H+
Sbjct: 221 ----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 241 NMVLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297
V V W + VL + D+ I+++++ + L + H + V ++ W P ++E
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 335
Query: 298 FVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G + W E+ H + V L P G + S + D T + W
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 29/225 (12%)
Query: 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ----NNMNNVKANKSAHKESVRDLSF-CRTD 168
D + WSHN+ + D G+++ + NN N A S H SV+ + F + D
Sbjct: 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD 126
Query: 169 LKFCSCSDDTTVKVWDFARCQEERS----LTGHGWDVKSVD------WHPTKS-LLVSGG 217
S ++ + +WD +C E S LT G + SVD W+ + + + S G
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAG 185
Query: 218 KDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWN-QNGNWVLTAS---KDQIIKLY 267
+ +WD K+ +E+ G K + V+W+ +N V TA+ D I ++
Sbjct: 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245
Query: 268 DIR-AMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
D+R A L++ +GH+K + +L W E +S D ++ W
Sbjct: 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 176 DDTTVKVWDF--ARCQEERSLTGHGWDVKSVDW-HPTKSLLVSGGKDSLVKLWDAKSGRE 232
+D ++ +WD A + GH + S+DW H + LL+S G+D+ V LW+ +S +
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
Query: 233 LCSFHGHKNMVLCVKW 248
L F N K+
Sbjct: 298 LSQFPARGNWCFKTKF 313
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 121/304 (39%), Gaps = 24/304 (7%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
++ ++ G+R+ + ++ ++ + ++AH+ + +S +D ++ +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS 682
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEE 191
+K W + + H E V F + L + S D +K+WD + +
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-------------G 238
++ GH V + P LL S D +KLWDA S E S +
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQED 802
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEY 297
+ +V C W+ +G ++ A+K++I L+DI L E GH + + P +
Sbjct: 803 MEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLA 861
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW---- 353
V+ S + W + + H + V + + P G + S+D T + W
Sbjct: 862 VVALS-QYCVELWNTDSRSKVADCRG-HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Query: 354 -CRN 356
C+N
Sbjct: 920 VCKN 923
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 6/192 (3%)
Query: 46 LPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLW----TPTGRRLITGSQSGEFTLWNG 101
L +A+ D + V+ + ++R + +W T + LI+ S E +WN
Sbjct: 979 LQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNW 1038
Query: 102 QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 161
Q + + L+ H ++ N ++S G +K W N + + H+ +V
Sbjct: 1039 Q-LDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLS 1096
Query: 162 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221
KF S S D T K+W F L GH V+ + +LL +G +
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 222 VKLWDAKSGREL 233
+++W+ +G L
Sbjct: 1157 IRIWNVSNGELL 1168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 6/183 (3%)
Query: 133 DDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189
D+G W N N ++ H ++V F + SC D T++V+ +
Sbjct: 595 DNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE 654
Query: 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 249
+ + H +V + + + D VK+W++ +G + ++ H V C +
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT 714
Query: 250 QNGNWVL--TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307
+ + +L T S D +KL+D+ + + GH V + P ++ S S DG++
Sbjct: 715 NSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTL 773
Query: 308 FHW 310
W
Sbjct: 774 KLW 776
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Query: 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
++++ H A+ +S + + S ++ ++ AH++ V +F
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS----LLVSGGKDSLVK 223
D +CS D VK+W+ + + H V H T S LL +G D +K
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCC--HFTNSSHHLLLATGSSDCFLK 732
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 278
LWD + GH N V +++ + + + S D +KL+D + E +S
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI 787
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
H + + ++ ++ ++S D I+ W ++ + H+E+V+D + +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR-GHQETVKDFRLLKNS-RLL 1065
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
S S D TVKVW+ +E+ H V S D + S D K+W
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP 1125
Query: 233 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
L GH V C ++ + + T + I+++++
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 18/231 (7%)
Query: 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLI--TGSQSGEFTLWNGQSFNFEMILQAHDH 115
S + VHT +++ +N +T + L+ TGS LW+ + H +
Sbjct: 692 SMTGELVHT-YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN 750
Query: 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL----KF 171
++ +S +D + S G +K W N + + + K+ +L + D+ K
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV-KQFFLNLEDPQEDMEVIVKC 809
Query: 172 CSCSDD---------TTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSL 221
CS S D + ++D + TGH ++ D+ P L V
Sbjct: 810 CSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC 869
Query: 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
V+LW+ S ++ GH + V V ++ +G+ LT+S DQ I+L++ + +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 21/297 (7%)
Query: 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDN 127
+N +N V W+ +G L + + LW+ S + +LQ I S+ W N
Sbjct: 23 RNDYYLNLVDWS-SGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGN 80
Query: 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWD 184
++ G ++ W N ++H V LS+ L S S V+V +
Sbjct: 81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 140
Query: 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHK 240
+L+GH +V + W P L SGG D+LV +W + G L +F H+
Sbjct: 141 ----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 241 NMVLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297
V V W + VL + D+ I+++++ + L + H + V ++ W P ++E
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 255
Query: 298 FVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G + W E+ H + V L P G + S + D T + W
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 33/286 (11%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+ITG+ +++ + F + L HD + ++ ++H +VSG ++ W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG 193
Query: 147 NVKANKSAHKESVRDLSFCR-TDLKF-CSCSDDTTVKVWDFARCQ------EERS----- 193
H +VR L ++K+ + S D T+ VW + EE
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253
Query: 194 ------------LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
L GH V++V H +++VSG D+ + +WD + L GH +
Sbjct: 254 HTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXKCLYILSGHTD 311
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
+ ++ ++AS D I+++D+ + + +GH V L +++ VS
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL---RLSDKFLVSA 368
Query: 302 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347
+ DGSI W + + H H N ++ +L SGS +
Sbjct: 369 AADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGSEN 412
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 31/211 (14%)
Query: 126 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185
DN++++G D I+ + + S H V L + + S S D TV+VWD
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Query: 186 ARCQEERSLTGHGWDVKSVDWHPTKSL--LVSGGKDSLVKLWDAKSGREL---------- 233
+ GH V+ +D K++ +V+G +D+ + +W +
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 234 CSFH-------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 280
FH GH V V + +GN V++ S D + ++D+ K L G
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 281 HRKDVTALAWHPFHE-EYFVSGSLDGSIFHW 310
H + + + HE + +S S D +I W
Sbjct: 309 HTDRIYSTIYD--HERKRCISASXDTTIRIW 337
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 235 SFHGHKNMVL-CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 293
+ GH V+ C+++ N +V+T + D+ I++YD K L GH V AL +
Sbjct: 116 TLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-- 171
Query: 294 HEEYFVSGSLDGSIFHWLV--GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
H VSGS D ++ W + G T E HN + + + I Y++ +GS D+T
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDNTLH 230
Query: 352 FW 353
W
Sbjct: 231 VW 232
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 46/190 (24%)
Query: 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143
G +++GS +W+ IL H I S ++ H +S
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA----------- 328
Query: 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 203
S DTT+++WD + +L GH V
Sbjct: 329 -------------------------------SXDTTIRIWDLENGELXYTLQGHTALVGL 357
Query: 204 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263
+ + LVS D ++ WDA S+H H N+ + + N +++ S++Q
Sbjct: 358 L--RLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQ- 413
Query: 264 IKLYDIRAMK 273
+Y++R+ K
Sbjct: 414 FNIYNLRSGK 423
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLV---SGGKDSLVKLWDAKSGR---ELCSFHGHK 240
+C E+ ++ WD +P L+ SGG LV L K+GR + GH
Sbjct: 23 QCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLV-LPLGKTGRVDKNVPLVXGHT 81
Query: 241 NMVLCVKWN-QNGNWVLTASKDQIIKLYDI------RAMKE-LESFRGHRKDVTALAWHP 292
VL + W N N + + S+D + +++I ++E + + GH K V +AWHP
Sbjct: 82 APVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP 141
Query: 293 FHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
+ +S D I W VG + + +VH +T++ + W G L+C+ D +
Sbjct: 142 TAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 352 FWCRNRPGDTARDK 365
R G +K
Sbjct: 202 V-IEPRKGTVVAEK 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 53/173 (30%)
Query: 109 ILQAHDHAIRSMVWS-HNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
++ H + + W HNDN + SG
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASG----------------------------------- 100
Query: 168 DLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPT-KSLLVSGGKD 219
S+D TV VW+ + +L GH V V WHPT +++L+S G D
Sbjct: 101 -------SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Query: 220 SLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270
+++ +WD +G + + H + + V W+++G + T+ +D+ +++ + R
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 33/295 (11%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146
+ITG+ +++ + F + L HD + ++ ++H +VSG ++ W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG 193
Query: 147 NVKANKSAHKESVRDLSFCR-TDLKF-CSCSDDTTVKVWDFARCQ------EERS----- 193
H +VR L ++K+ + S D T+ VW + EE
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253
Query: 194 ------------LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
L GH V++V H +++VSG D+ + +WD + L GH +
Sbjct: 254 HTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
+ ++ ++AS D I+++D+ + + + +GH V L +++ VS
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL---RLSDKFLVSA 368
Query: 302 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ DGSI W + + H H N ++ +L SGS + + R+
Sbjct: 369 AADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGSENQFNIYNLRS 421
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 31/211 (14%)
Query: 126 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185
DN++++G D I+ + + S H V L + + S S D TV+VWD
Sbjct: 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Query: 186 ARCQEERSLTGHGWDVKSVDWHPTKSL--LVSGGKDSLVKLWDAKSGREL---------- 233
+ GH V+ +D K++ +V+G +D+ + +W +
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 234 CSFH-------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 280
FH GH V V + +GN V++ S D + ++D+ MK L G
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308
Query: 281 HRKDVTALAWHPFHE-EYFVSGSLDGSIFHW 310
H + + + HE + +S S+D +I W
Sbjct: 309 HTDRIYSTIYD--HERKRCISASMDTTIRIW 337
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 235 SFHGHKNMVL-CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 293
+ GH V+ C+++ N +V+T + D++I++YD K L GH V AL +
Sbjct: 116 TLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-- 171
Query: 294 HEEYFVSGSLDGSIFHWLV--GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
H VSGS D ++ W + G T E HN + + + I Y++ +GS D+T
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDNTLH 230
Query: 352 FW 353
W
Sbjct: 231 VW 232
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 46/190 (24%)
Query: 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143
G +++GS +W+ IL H I S ++ H +S
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA----------- 328
Query: 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 203
S DTT+++WD + +L GH V
Sbjct: 329 -------------------------------SMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 204 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263
+ + LVS D ++ WDA S+H H N+ + + N +++ S++Q
Sbjct: 358 L--RLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQ- 413
Query: 264 IKLYDIRAMK 273
+Y++R+ K
Sbjct: 414 FNIYNLRSGK 423
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 12/264 (4%)
Query: 98 LWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK 156
+WN S + + + + + S+ WSH+ +++ G G + + + H+
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 157 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVS 215
V LS+ R L S S + D + +L GH +V + W L S
Sbjct: 177 ARVGCLSWNRHVLS--SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234
Query: 216 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLT--ASKDQIIKLYDIRAM 272
GG D++V++WDA+S + H V V W N + T + D+ I ++
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 273 KELESFRGHRKDVTALAWHPFHEEYFVS-GSLDGSIFHWLVGHE--TPQVEIHNVHDNTV 329
+ + + VT+L W P +E + G D ++ W T QV+I HD V
Sbjct: 295 ARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRV 352
Query: 330 WDLAWHPIGYLLCSGSNDHTTKFW 353
A P G +L + ++D KFW
Sbjct: 353 LYSALSPDGRILSTAASDENLKFW 376
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLV---SGGKDSLVKLWDAKSGR---ELCSFHGHK 240
+C E+ ++ WD +P L+ SGG LV L K+GR + GH
Sbjct: 23 QCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLV-LPLGKTGRVDKNVPLVCGHT 81
Query: 241 NMVLCVKWN-QNGNWVLTASKDQIIKLYDI------RAMKE-LESFRGHRKDVTALAWHP 292
VL + W N N + + S+D + +++I ++E + + GH K V +AWHP
Sbjct: 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP 141
Query: 293 FHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
+ +S D I W VG + + +VH +T++ + W G L+C+ D +
Sbjct: 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 352 F 352
Sbjct: 202 V 202
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 39/166 (23%)
Query: 109 ILQAHDHAIRSMVWS-HNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
++ H + + W HNDN + SG + + W+ + +E V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---PLREPV-------- 124
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWD 226
+L GH V V WHPT +++L+S G D+++ +WD
Sbjct: 125 ------------------------ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 227 AKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270
+G + + H + + V W+++G + T+ +D+ +++ + R
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 171 FCSCSDDTTVKVWDFARCQEE-------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223
S S D TV +W ++ ++LTGH V + +S D ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF--RGH 281
LWD ++G F GH++ V V ++ + +L+A ++ IKL++I + S H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 282 RKDVTALAWHPFHEE---------YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
V+ + + P + YF S DG + W + H++ V L
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT--FKAHESNVNHL 219
Query: 333 AWHPIGYLLCSGSNDHTTKFW 353
+ P G + +G D W
Sbjct: 220 SISPNGKYIATGGKDKKLLIW 240
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 30/254 (11%)
Query: 109 ILQAHDHAIRSMV--WSHNDN----WMVSGDDGGAIKYW------QNNMNNVKANK-SAH 155
IL+ H + S+V +S +N ++SG + W QN + + H
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 156 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 215
V DL+ + + S S D T+++WD + GH +V SV + P ++S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 216 GGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWN---QNGN-------WVLTASKDQI 263
G + +KLW+ + S H + V CV+++ ++ N + + D
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-PQVEIH 322
+K+++ + +F+ H +V L+ P + +Y +G D + W + + T PQ E
Sbjct: 196 LKVWNTN-FQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Query: 323 NVHDNTVWDLAWHP 336
+T+ +A++P
Sbjct: 254 --AGSTINQIAFNP 265
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 19/248 (7%)
Query: 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNW 128
+ V W + + ++ S SG LW + E +L HD ++++ +
Sbjct: 97 VTDVAWV-SEKGILVASDSGAVELW--EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFAR 187
VSG ++K W + V + +AH V ++ C D F SC +D + +WD +
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 188 CQEERSLTGHGWDV--KSVDWHPTKSLLVSGGKD----SLVKLWDAKSGRELCSFHGHKN 241
+ + D SV WHP K + G + SLV + + S + + H
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-QTSAVHSQNI 272
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
L ++ + ++ + S+D + + D E+ HR VT +AW P F +
Sbjct: 273 TGLAYSYHSS-PFLASISEDCTVAVLDAD-FSEVFRDLSHRDFVTGVAWSPLDHSKFTTV 330
Query: 302 SLDGSIFH 309
D + H
Sbjct: 331 GWDHKVLH 338
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC----SFHGHKNMVLCVKWNQNGNWVL 256
V V W K +LV+ + V+LW+ L + + H ++V + +G +
Sbjct: 97 VTDVAWVSEKGILVASDSGA-VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 257 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316
+ KD +K++D+ L+S+ H +V +A P + F+S DG I W
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Query: 317 PQVEIHNVHDNTV-WDLAWHP 336
P I +T+ + WHP
Sbjct: 216 PATRIDFCASDTIPTSVTWHP 236
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 98/231 (42%), Gaps = 11/231 (4%)
Query: 117 IRSMVWSHNDNWMVSGDDGGAIKYWQ----NNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
+ + W +V+ D GA++ W+ ++ K K H + V+ LS +
Sbjct: 97 VTDVAWVSEKGILVASD-SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGR 231
S D +VKVWD ++ +S H +V V P K ++ +S G+D + LWD + +
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Query: 232 --ELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288
F + V W+ + + + + L +I+ ++ H +++T L
Sbjct: 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275
Query: 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 339
A+ + S S D ++ ++ + +V H + V +AW P+ +
Sbjct: 276 AYSYHSSPFLASISEDCTVA--VLDADFSEVFRDLSHRDFVTGVAWSPLDH 324
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 28/231 (12%)
Query: 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDW-HPT- 209
AH E + D + +CS D T+K+++ + +LTGH V VDW HP
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 210 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKW--NQNGNWVLTASKDQIIK 265
++L S D V +W ++GR ++ H V V+W ++ G +L AS D +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 266 LYDIRAMKELE--SFRGHRKDVTALAWHPFHEE------------YFVSGSLDGSIFHWL 311
+ + + H V + +W P E FV+G D + W
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
Query: 312 VGHETPQVEIHNV---HDNTVWDLAWHPIGYL---LCSGSNDHTTKFWCRN 356
+ + + H + V D+AW P L L S S D T W ++
Sbjct: 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDW-HPT 209
+AH E + D + +CS D T+K+++ + +LTGH V VDW HP
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 210 -KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKW--NQNGNWVLTASKDQII 264
++L S D V +W ++GR ++ H V V+W ++ G +L AS D +
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 265 KLYDIRAMKELE--SFRGHRKDVTALAWHPFHEE------------YFVSGSLDGSIFHW 310
+ + + H V + +W P E FV+G D + W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 311 LVGHETPQVEIHNV---HDNTVWDLAWHPIGYL---LCSGSNDHTTKFWCRN 356
+ + + H + V D+AW P L L S S D T W ++
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 103/267 (38%), Gaps = 32/267 (11%)
Query: 31 DRTVLQATPAAAIDMLPTVAYTDNPSTSF-----AAKFVH-----TSLNKNRCSINRVLW 80
D ++L ++ L + TD + A+ H S K + + W
Sbjct: 57 DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116
Query: 81 TPTGRRLITGSQSGEFTLWN--GQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 138
+ G ++TG ++GE LWN G N +L H I S+ W+ + ++S D
Sbjct: 117 SHDGNSIVTGVENGELRLWNKTGALLN---VLNFHRAPIVSVKWNKDGTHIISMDVENVT 173
Query: 139 KYW--------------QNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183
W + +++ A N S D+ + D KF + V+
Sbjct: 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVY 232
Query: 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 243
L GH + ++++ T LL+S D +++W +G F+GH +
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI 292
Query: 244 LCVKWNQNGNWVLTASKDQIIKLYDIR 270
+ W + V++ S D ++L+ ++
Sbjct: 293 VSASWVGDDK-VISCSMDGSVRLWSLK 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
V + W + +V+G ++ ++LW+ K+G L + H+ ++ VKWN++G +++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 261 DQIIKLYDIRAMKELESF------------RGHRKDVTA---LAWHPFHEEYFVSGSLDG 305
+ + L+++ + ++ F H D + + W ++ FV G
Sbjct: 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW--VDDDKFVIPGPKG 227
Query: 306 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+IF + + +TP ++ H + L ++ LL S S+D T + W
Sbjct: 228 AIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Query: 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNN 144
R+I+GS ++ G F F+ H + S+ ++ + + S G DG + Y N
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY--NG 219
Query: 145 MNNVKA--------NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-T 195
++ K AH SV L++ K S S D T+K+W+ A + E+++
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
G + + + TK LVS + + + + G +GH + + + +G +
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339
Query: 256 LTASKDQIIKLYDI 269
+A + I +DI
Sbjct: 340 FSADAEGHINSWDI 353
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 169 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228
+ S SDD TV +++ + + + H V SV ++P SL S G D + L++
Sbjct: 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 229 SGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273
G + F H V + W+ +G + +AS D+ IK++++ +K
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 255 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI--FHWLV 312
+++ S D + +++ K +F H K V ++ ++P F S DG+I ++ +
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD 221
Query: 313 GHETPQVE---IHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G +T E + NV H +V+ L W P G + S S D T K W
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 56/335 (16%), Positives = 122/335 (36%), Gaps = 53/335 (15%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL----QAHDHAIRSMVWSHNDNWM 129
S+ + W+P G ++ + S +WN + E + + D + ++W+ +
Sbjct: 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL-GIIWTKQA--L 297
Query: 130 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189
VS G I + + ++ + H +++ LS S + + WD +
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 190 EERSL------------TGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGREL-- 233
R T D+ +V W ++ +GG DS + + S + L
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 234 ----------------CSFHGHKNMV--------LCVKWNQNGNWVLTASKDQIIKLYDI 269
+ + H + CV + + +V +D + +Y +
Sbjct: 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477
Query: 270 R--AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH--ETPQVEIHNVH 325
++ E+++ H ++T++A+ + + V+ + + V + E H
Sbjct: 478 SGASVSEVKTIV-HPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535
Query: 326 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
V ++W P L +GS D++ W N+P D
Sbjct: 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ--NNMNNVKANK-SAHKESVRDLS 163
E+ H I S+ +S+N ++V+ D + + NN N + H V +S
Sbjct: 484 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543
Query: 164 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWD-VKSVDWHPTKSLLVSGGKDS 220
+ +++ + S D +V VW+ + + + H V SV W ++ +VS G+DS
Sbjct: 544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS 602
Query: 221 LVKLWDA 227
+K W+
Sbjct: 603 NIKFWNV 609
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 78 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---IRSMVWSHNDNWMVSGDD 134
V W+P RL TGS +WN + I+ HA + S++W N+ +VS
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQ 600
Query: 135 GGAIKYWQ 142
IK+W
Sbjct: 601 DSNIKFWN 608
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 34/276 (12%)
Query: 75 INRVLWTPTGRRLITGSQS----GEFTLWNGQSFNFEMILQAHDHAIRS--MVWSHNDNW 128
I+ + W GRRL + G F W+ S N + H I + + S
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS 176
Query: 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFC-SCSDDTTVKVWD- 184
M GDDG + Y ++++ HK+ VRD+ F +F + D + +D
Sbjct: 177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236
Query: 185 ----FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
F + E+ G + ++ W ++ + G D+ +++WD + + + + K
Sbjct: 237 KSGEFLKYIEDDQEPVQG-GIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDK 294
Query: 241 ----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 296
N + V NG +++ S D + Y++ + L++ GH K +TAL +P
Sbjct: 295 QQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP---- 349
Query: 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
+SGS DG I W +H H N + L
Sbjct: 350 -LISGSYDGRIMEW------SSSSMHQDHSNLIVSL 378
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 264 IKLYDIRAMKELESFR--GHRKDVTALAWHP---------FHEEYFVSGSLDGSIFHWLV 312
I LYD+++ +E+++ R + A++W P E+ +GSLD +IF + V
Sbjct: 512 ILLYDLQS-REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570
Query: 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
++ N H + V +L W L+ SG+ D K W
Sbjct: 571 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRW 610
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDW-HPT 209
+AH E + D + +CS D T+K+++ + +LTGH V VDW HP
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 210 -KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKW--NQNGNWVLTASKDQII 264
++L S D V +W ++GR ++ H V V+W ++ G +L AS D +
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 265 KLYDIRAMKELE--SFRGHRKDVTALAWHPFHEE------------YFVSGSLDGSIFHW 310
+ + + H V + +W P E FV+G D + W
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 311 LVGHETPQVEIHNV---HDNTVWDLAWHPIGYL---LCSGSNDHTTKFWCRN 356
+ + + H + V D+AW P L + S S D T W ++
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 28/231 (12%)
Query: 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDW-HPT- 209
AH E + D + +CS D T+K+++ + +LTGH V VDW HP
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 210 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKW--NQNGNWVLTASKDQIIK 265
++L S D V +W ++GR ++ H V V+W ++ G +L AS D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 266 LYDIRAMKELE--SFRGHRKDVTALAWHPFHEE------------YFVSGSLDGSIFHWL 311
+ + + H V + +W P E FV+G D + W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 312 VGHETPQVEIHNV---HDNTVWDLAWHPIGYL---LCSGSNDHTTKFWCRN 356
+ + + H + V D+AW P L L S S D T W ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 47/203 (23%)
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
V +N + G+DG + ++ V+ +A ++ ++F RT + + + +
Sbjct: 156 VVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTP-EILTVNSIGQL 214
Query: 181 KVWDFARCQEE----RSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCS 235
K+WDF + E SLTG + VD HP + ++ +GG+D ++ +WD + G S
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 236 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 295
+ H ++ + +HP +
Sbjct: 275 L-----------------------------------------LKAHEAEMWEVHFHPSNP 293
Query: 296 EYFVSGSLDGSIFHWLVGHETPQ 318
E+ + S DGS++HW + P+
Sbjct: 294 EHLFTCSEDGSLWHWDASTDVPE 316
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
+V+ G+D + L+ A + + + L +LT + +K++D R
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQ 222
Query: 273 ----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
++ S G R + + HP + +G DG + W V T V + H+
Sbjct: 223 GNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAE 282
Query: 329 VWDLAWHP 336
+W++ +HP
Sbjct: 283 MWEVHFHP 290
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 7/200 (3%)
Query: 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKF 171
D+ IRS + ++ G + + W +KA ++ + L+ D K
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SPDSKV 155
Query: 172 C-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 230
C SC D + VWD R GH +D + L +GG D+ V+ WD + G
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 231 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290
R+L H + + + + G W+ + +++ + + + H V +L +
Sbjct: 216 RQL-QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKF 273
Query: 291 HPFHEEYFVSGSLDGSIFHW 310
+ ++FVS D + W
Sbjct: 274 -AYCGKWFVSTGKDNLLNAW 292
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 24/196 (12%)
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
DL F SCS D++ VW + +L GH + S+D V+G D +KLWD
Sbjct: 45 DLLF-SCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287
+G+ + ++ V V+++ GN+ L A D ++K + E+E ++T
Sbjct: 104 SNGQCVATWKS-PVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIER-DSATHELTK 160
Query: 288 LAWHPFHE-------------------EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328
++ P H+ +Y ++G DG I + V + V+ ++H+ +
Sbjct: 161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS 220
Query: 329 VWDLAWHP-IGYLLCS 343
+ D+ + P + Y + S
Sbjct: 221 ISDMQFSPDLTYFITS 236
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 253
LTGH + V ++ LL S KDS +W + +G L + GH + + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 254 WVLTASKDQIIKLYDI 269
+ +T S D IKL+D+
Sbjct: 88 YCVTGSADYSIKLWDV 103
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 236 FHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTA 287
GH+ + WN N +L+AS D + L+DI A + F GH V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIG-YLLCSG 344
+AWH HE F S + D + W T H + H V L+++P ++L +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 345 SNDHTTKFW 353
S D T W
Sbjct: 295 SADKTVALW 303
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSG-------RELCSFHG 238
C + L GH + + W+ S L+S D V LWD +G F G
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG 227
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R+ K H +V L+++P+
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 354 CRNRPGD 360
++ G+
Sbjct: 348 DLSKIGE 354
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 87 LITGSQSGEFTLWN-------GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAI 138
L++ S LW+ G+ + + I H + + W +++ S D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 139 KYWQNNMNNVKANK---SAHKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEE-RS 193
W N AH V LSF ++ + S D TV +WD + + +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 194 LTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWD-AKSGRE------------LCSFHG- 238
H ++ V W P +++L S G D + +WD +K G E L HG
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLY 267
H + WN N WV+ + S+D I++++
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 28/254 (11%)
Query: 75 INRVLWTPTGRRLITGSQS----GEFTLWNGQSFNFEMILQAHDHAIRS--MVWSHNDNW 128
I+ + W GRRL + G F W+ S N + H I + + S
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPXRS 176
Query: 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFC-SCSDDTTVKVWD- 184
GDDG + Y ++++ HK+ VRD+ F +F + D + +D
Sbjct: 177 XTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236
Query: 185 ----FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
F + E+ G + ++ W ++ + G D+ +++WD + + + + K
Sbjct: 237 KSGEFLKYIEDDQEPVQG-GIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDK 294
Query: 241 ----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 296
N + V NG +++ S D + Y++ + L++ GH K +TAL +P
Sbjct: 295 QQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP---- 349
Query: 297 YFVSGSLDGSIFHW 310
+SGS DG I W
Sbjct: 350 -LISGSYDGRIXEW 362
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 264 IKLYDIRAMKELESFR--GHRKDVTALAWHP---------FHEEYFVSGSLDGSIFHWLV 312
I LYD+++ +E+++ R + A++W P E+ +GSLD +IF + V
Sbjct: 512 ILLYDLQS-REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570
Query: 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
++ N H + V +L W L+ SG+ D K W
Sbjct: 571 KRPXKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRW 610
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 171 FCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLV 222
F S S D T+KVWD Q EE + H V TK LV+ G + V
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV------STKHCLVAVGTRGPKV 168
Query: 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIR 270
+L D KSG GH+ +L V W+ +++L TAS D +KL+D+R
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 18/218 (8%)
Query: 197 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL--CVKWNQNGN 253
H + V++V W+P + + S D +K+WD + + F+ + + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 254 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV- 312
V ++ ++L D+++ +GHR+++ A++W P ++ + S D + W V
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 313 -------------GHETPQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358
G ++ VE N H+ V L + G L + D+ + W +
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 359 GDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPT 396
+T + + N G + V G +P G T
Sbjct: 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST 315
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 34/203 (16%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS-HNDNWMVSGDDGGAIKYW---- 141
+ G++ + L + +S + ILQ H I ++ WS D + + +K W
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 142 ---------QNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189
Q+N V++ +AH V L F L + D +++W+ +
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS--N 276
Query: 190 EERSLTGHGWDVKSVDWHPTKSL--LVSGGKDS---------LVKLWDAKSGRELCSFHG 238
E +L +G V + K L VS G S + ++ SG ++ G
Sbjct: 277 GENTLVNYG----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332
Query: 239 HKNMVLCVKWNQNGNWVLTASKD 261
H V C + N + + S+D
Sbjct: 333 HYKTVDCCVFQSNFQELYSGSRD 355
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 28/231 (12%)
Query: 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDW-HPT- 209
AH E + D + +CS D T+K+++ + +LTGH V VDW HP
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 210 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKW--NQNGNWVLTASKDQIIK 265
++L S D V +W ++GR ++ H V V+W ++ G +L AS D +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 266 LYDIRAMKELE--SFRGHRKDVTALAWHPFHEE------------YFVSGSLDGSIFHWL 311
+ + + H V + +W P E FV+G D + W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 312 VGHETPQVEIHNV---HDNTVWDLAWHPIGYL---LCSGSNDHTTKFWCRN 356
+ + + H + V D+AW P L S S D T W ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQD 237
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSG-------RELCSFHG 238
C + L GH + + W+ S L+S D V LWD +G F G
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG 227
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFH 294
H +V V W+ + + + DQ + ++D R+ K H +V L+++P+
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
E +GS D ++ W + + ++ H + ++ + W P +L S D W
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 354 CRNRPGD 360
++ G+
Sbjct: 348 DLSKIGE 354
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 87 LITGSQSGEFTLWN-------GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAI 138
L++ S LW+ G+ + + I H + + W +++ S D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 139 KYWQNNMNNVKANK---SAHKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEE-RS 193
W N AH V LSF ++ + S D TV +WD + + +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 194 LTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWD-AKSGRE------------LCSFHG- 238
H ++ V W P +++L S G D + +WD +K G E L HG
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 239 HKNMVLCVKWNQNGNWVL-TASKDQIIKLY 267
H + WN N WV+ + S+D I +++
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 123 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD---LSFCRTDLKFCSCSDDTT 179
S D ++SG K W+ ++ N AH SV D +SF KF + S D T
Sbjct: 111 SFQDGVVISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKT 166
Query: 180 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 239
+K+W + ++ +G DV +S D L+KL D +G L ++ GH
Sbjct: 167 IKLWQNDKVI--KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH 224
Query: 240 KNMVLCVKWNQNGNWVLTASKDQIIKLY 267
++ V C+K NG+ +++ +D+ ++++
Sbjct: 225 ESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVW-DFARCQEERSLTGHGWDVKSVDWHPTKSLL 213
H+ +V LSF D S S D T KVW + + ++ WD K V + K L
Sbjct: 103 HQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 214 VSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
S D +KLW ++ + + +F G H ++V + +G+++ + S D +IKL D
Sbjct: 161 ASA--DKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTG 215
Query: 273 KELESFRGHRKDVTALAWHP 292
L ++ GH V + P
Sbjct: 216 DVLRTYEGHESFVYCIKLLP 235
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 45/186 (24%)
Query: 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNM 145
+I+GS +W S + LQAH+ ++ + V S ++N ++ IK WQN+
Sbjct: 117 VISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND- 173
Query: 146 NNVKANKSAHKESVRDLSF--------CRTD----------------------LKFC--- 172
+K H + VR L+ C D +C
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Query: 173 -------SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225
SC +D TV++W ++ +T + SVD ++V G D+LV+++
Sbjct: 234 LPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292
Query: 226 DAKSGR 231
+ R
Sbjct: 293 SQEKSR 298
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNW------MVSGDDGGAIKYWQNNMNNVKANK 152
+G F F I++ ++ ++ D + G G IK +N N +
Sbjct: 76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212
AH + L F + S S D +K+W R+L GH V +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
++S D ++LW+ +G + +F+ +N
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229
+F + + +KV D + H ++ + + P+ L+S +D +K+W K
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
G + GH+ V + G VL+AS D I+L++
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
+ G + +K+ D+ + H + + +K+ +G ++++S+D +K++ ++
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
+ GHR VT +A +S SLDG+I W G
Sbjct: 172 SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECG 211
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341
R D TA+ F+ G+ +G I L + Q EI H + + L + P G L
Sbjct: 96 RADYTAVDTAKLQMRRFILGTTEGDI-KVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 154
Query: 342 CSGSNDHTTKFW 353
S S D K W
Sbjct: 155 ISSSQDMQLKIW 166
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 85 RRLITGSQSGEFTLWNGQSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143
RR I G+ G+ + + +FN + I QAH I + + + ++S +K W
Sbjct: 110 RRFILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
+ H+ +V D++ S S D T+++W+
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNW------MVSGDDGGAIKYWQNNMNNVKANK 152
+G F F I++ ++ ++ D + G G IK +N N +
Sbjct: 73 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 132
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212
AH + L F + S S D +K+W R+L GH V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
++S D ++LW+ +G + +F+ +N
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229
+F + + +KV D + H ++ + + P+ L+S +D +K+W K
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
G + GH+ V + G VL+AS D I+L++
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272
+ G + +K+ D+ + H + + +K+ +G ++++S+D +K++ ++
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
+ GHR VT +A +S SLDG+I W G
Sbjct: 169 SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECG 208
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341
R D TA+ F+ G+ +G I L + Q EI H + + L + P G L
Sbjct: 93 RADYTAVDTAKLQMRRFILGTTEGDI-KVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 151
Query: 342 CSGSNDHTTKFW 353
S S D K W
Sbjct: 152 ISSSQDMQLKIW 163
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 85 RRLITGSQSGEFTLWNGQSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143
RR I G+ G+ + + +FN + I QAH I + + + ++S +K W
Sbjct: 107 RRFILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
+ H+ +V D++ S S D T+++W+
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKD 261
S+D + ++V+G V L + G+EL + HK V V N +W L TAS D
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272
Query: 262 QIIKLYDIRAMKELESFRG---HRKDVTALAWHP 292
Q +K++D+R ++ SF HR V A + P
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 266 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
L+ + + + L+ + T+LAWHP H GS G I W G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG 150
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKD 261
S+D + ++V+G V L + G+EL + HK V V N +W L TAS D
Sbjct: 215 SLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVD 273
Query: 262 QIIKLYDIRAMKELESFRG---HRKDVTALAWHP 292
Q +K++D+R ++ SF HR V A + P
Sbjct: 274 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 307
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 266 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
L+ + + + L+ + T+LAWHP H GS G I W G
Sbjct: 104 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG 151
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKD 261
S+D + ++V+G V L + G+EL + HK V V N +W L TAS D
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272
Query: 262 QIIKLYDIRAMKELESFRG---HRKDVTALAWHP 292
Q +K++D+R ++ SF HR V A + P
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 266 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
L+ + + + L+ + T+LAWHP H GS G I W G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG 150
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 192 RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVK 247
+ GHG + + +HP +LL+S KD ++LW+ ++ + F GH++ VL
Sbjct: 145 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 204
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279
++ G +++ D +KL+ I + + + + +
Sbjct: 205 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
II++ + M+ ++ + GH + L +HP +S S D ++ W + +T
Sbjct: 132 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 191
Query: 323 NV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V H + V + +G + S DH+ K W
Sbjct: 192 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWH 291
+F H +V CV W N ++T S+D+ +Y+ R K+ + T + W
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 292 PFHEEYFV-SGSLDGSIFH-------WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343
P +++ V SG+ S+ + W+ H + +T+ L WHP LL +
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKH------LKRPLRSTILSLDWHPNNVLLAA 163
Query: 344 GSND 347
G D
Sbjct: 164 GCAD 167
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 195 TGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQ 250
GHG + + +HP +LL+S KD ++LW+ ++ + F GH++ VL ++
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 166
Query: 251 NGNWVLTASKDQIIKLYDIRAMKELESFR 279
G +++ D +KL+ I + + + + +
Sbjct: 167 LGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
II++ + M+ ++ + GH + L +HP +S S D ++ W + +T
Sbjct: 91 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 150
Query: 323 NV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V H + V + +G + S DH+ K W
Sbjct: 151 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 192 RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVK 247
+ GHG + + +HP +LL+S KD ++LW+ ++ + F GH++ VL
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 167
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279
++ G +++ D +KL+ I + + + + +
Sbjct: 168 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
II++ + M+ ++ + GH + L +HP +S S D ++ W + +T
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 323 NV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V H + V + +G + S DH+ K W
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 192 RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVK 247
+ GHG + + +HP +LL+S KD ++LW+ ++ + F GH++ VL
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279
++ G +++ D +KL+ I + + + + +
Sbjct: 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
II++ + M+ ++ + GH + L +HP +S S D ++ W + +T
Sbjct: 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155
Query: 323 NV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V H + V + +G + S DH+ K W
Sbjct: 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 192 RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVK 247
+ GHG + + +HP +LL+S KD ++LW+ ++ + F GH++ VL
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 167
Query: 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279
++ G +++ D +KL+ I + + + + +
Sbjct: 168 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
II++ + M+ ++ + GH + L +HP +S S D ++ W + +T
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 323 NV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V H + V + +G + S DH+ K W
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 106/289 (36%), Gaps = 66/289 (22%)
Query: 75 INRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
+ + W PT + GS+ G+ LW+ N +Q M GD
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG----------------MGPGD 118
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLS------FCRTDLKFCSCSDDTTVKVWDFAR 187
+K+ Q N N + + ++RD S F +TD WD+
Sbjct: 119 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD-------------SWDYWY 165
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 247
C VD ++ +L +G + L G E+ HK V +
Sbjct: 166 C--------------CVDVSVSRQMLATGDS-TGRLLLLGLDGHEIFKEKLHKAKVTHAE 210
Query: 248 WNQNGNWVL-TASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSL 303
+N +W++ T+S D +KL+D+R +K+ S+ H K V A ++P ++
Sbjct: 211 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 270
Query: 304 DGSI-----FHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSG 344
I + W + Q+ IH T WHP+ L+ +G
Sbjct: 271 RNEIRVYSSYDW---SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 316
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 272 MKELESFRGHR------KDVTALAWHPFHEEYFVSGSLDGSIFHW 310
++ L+S++ HR + VT+L WHP H GS G I W
Sbjct: 56 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW 100
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 106/289 (36%), Gaps = 66/289 (22%)
Query: 75 INRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
+ + W PT + GS+ G+ LW+ N +Q M GD
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG----------------MGPGD 119
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLS------FCRTDLKFCSCSDDTTVKVWDFAR 187
+K+ Q N N + + ++RD S F +TD WD+
Sbjct: 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD-------------SWDYWY 166
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 247
C VD ++ +L +G + L G E+ HK V +
Sbjct: 167 C--------------CVDVSVSRQMLATGDS-TGRLLLLGLDGHEIFKEKLHKAKVTHAE 211
Query: 248 WNQNGNWVL-TASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSL 303
+N +W++ T+S D +KL+D+R +K+ S+ H K V A ++P ++
Sbjct: 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 271
Query: 304 DGSI-----FHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSG 344
I + W + Q+ IH T WHP+ L+ +G
Sbjct: 272 RNEIRVYSSYDW---SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 272 MKELESFRGHR------KDVTALAWHPFHEEYFVSGSLDGSIFHW 310
++ L+S++ HR + VT+L WHP H GS G I W
Sbjct: 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW 101
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLY----DIRAMKELESFRGHRKDVTALAW-HP 292
GH ++V V ++ G V T S DQ IK++ D + +S+R H + A+ W P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 293 FHEEYFVSGSLDGSIFHW 310
+ S S D ++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 318 QVEI---HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
QVE+ H+ H+ VW ++W+ G +L S +D + W
Sbjct: 295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
H +V SV W+ T ++L S G D V+LW A E
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLY----DIRAMKELESFRGHRKDVTALAW-HP 292
GH ++V V ++ G V T S DQ IK++ D + +S+R H + A+ W P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 293 FHEEYFVSGSLDGSIFHW 310
+ S S D ++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 318 QVEI---HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
QVE+ H+ H+ VW ++W+ G +L S +D + W
Sbjct: 295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
H +V SV W+ T ++L S G D V+LW A E
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLY----DIRAMKELESFRGHRKDVTALAW-HP 292
GH ++V V ++ G V T S DQ IK++ D + +S+R H + A+ W P
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 293 FHEEYFVSGSLDGSIFHWLVGHETPQVE 320
+ S S D ++ W E P E
Sbjct: 67 EYGRIIASASYDKTVKLW---EEDPDQE 91
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 318 QVEI---HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
QVE+ H+ H+ VW ++W+ G +L S +D + W
Sbjct: 293 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
H +V SV W+ T ++L S G D V+LW A E
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 339
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 211 SLLVSGGKDSLVKLWDAK-SGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
+ L++G + V+ W+ + SG+ + H VL V W+ +G+ V TAS D+ K++D
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 269 IRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
+ + + ++ H V + W + ++GS D ++ W P + +
Sbjct: 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-- 254
H V V W S + + D K+WD S + + H V + W + N+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 255 VLTASKDQIIKLYDIRA 271
V+T S D+ +K +D R+
Sbjct: 144 VMTGSWDKTLKFWDTRS 160
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 272 MKELESFRGHRKDVTALAWHP--FHEEYFVSGSLDGSIFHWLV---GHETPQVEIHNVHD 326
MK++E + L++ P + ++GS + W V G P+ + +H
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ--QMHT 86
Query: 327 NTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V D+ W G + + S D T K W
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMW 113
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 211 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVL 256
+L+ +G D K +DAKSG+EL F +V + W Q+G L
Sbjct: 498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 74 SINRVLWTP--TGRRLITGSQSGEFTL--WNGQ-SFNFEMILQAHDHAIRSMVWS----- 123
S+N V W P G L GS G +L + G+ + + I AH ++ W+
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164
Query: 124 ---------HNDNWMVSGDDGGA---IKYWQNNMN---NVKANKSAHKESVRDLSFCRT- 167
N++ GG IK W+ + + AH + VRD+++ +
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224
Query: 168 ---DLKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWD--VKSVDWHPTKSLLVSGG 217
SCS D V +W C + S T H ++ V V W T ++L G
Sbjct: 225 GLPTSTIASCSQDGRVFIW---TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG 281
Query: 218 KDSLVKLW-DAKSGRELC 234
D+ V LW ++ G+ +C
Sbjct: 282 GDNKVTLWKESVDGQWVC 299
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 75/227 (33%), Gaps = 43/227 (18%)
Query: 171 FCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDW--HPTKSLLVSGGKDSLVKL-- 224
SCS D V +W E+S GH V SV W H +L G D + L
Sbjct: 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
Query: 225 ------WDAKSGRELCSFHGHKNMVLCVKW--------------NQNGNWV---LTASKD 261
W+ K + H V W Q N++ + D
Sbjct: 134 YTGEGQWEVKKIN-----NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 262 QIIKLYDIRA---MKELESFRGHRKDVTALAWHP---FHEEYFVSGSLDGSIFHWLVGHE 315
+IKL+ KE + H V +AW P S S DG +F W
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248
Query: 316 TPQV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359
+ ++ + ++ VW ++W +L D+ W + G
Sbjct: 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 228 KSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---ELESFRGH 281
KSG + H H V V W + N ++T D+ ++ ++ L R +
Sbjct: 37 KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 96
Query: 282 RKDVTALAWHPFHEEYFV-SGSLDGSIFH-------WLVGHETPQVEIHNVHDNTVWDLA 333
R + W P +++ V SGS SI + W+ H + +TV L
Sbjct: 97 RA-ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR------STVLSLD 149
Query: 334 WHPIGYLLCSGSNDHTTKFWCR 355
WHP LL +GS D F CR
Sbjct: 150 WHPNSVLLAAGSCD----FKCR 167
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 11/119 (9%)
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQN 251
L H V VDW P + +V+ G D +W K + + CV+W N
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 252 GNWVLTASKDQIIKLY------DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304
S ++I + D K ++ + R V +L WHP + +GS D
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHP-NSVLLAAGSCD 163
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 228 KSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---ELESFRGH 281
KSG + H H V + W + N ++T D+ ++ ++ L R +
Sbjct: 37 KSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 96
Query: 282 RKDVTALAWHPFHEEYFV-SGSLDGSIFH-------WLVGHETPQVEIHNVHDNTVWDLA 333
R + W P +++ V SGS SI + W+ H + +TV L
Sbjct: 97 RA-ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR------STVLSLD 149
Query: 334 WHPIGYLLCSGSNDHTTKFWCR 355
WHP LL +GS D F CR
Sbjct: 150 WHPNSVLLAAGSCD----FKCR 167
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------IKYWQNNMNNVKAN 151
++IL H H + W W+V+G G +K W+ + N++
Sbjct: 279 IDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVR 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,388,505
Number of Sequences: 62578
Number of extensions: 830421
Number of successful extensions: 3050
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 424
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)