Query 006497
Match_columns 643
No_of_seqs 1092 out of 3026
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 18:04:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006497.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2126-2130//hhsearch_pdb/006497hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 352.0 44.0 289 65-355 101-409 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 342.2 43.3 345 11-358 72-568 (611)
3 3ow8_A WD repeat-containing pr 1.0 1 1 334.4 43.9 291 63-355 23-319 (321)
4 3iz6_a 40S ribosomal protein R 1.0 1 1 333.2 36.4 296 62-358 56-376 (380)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 331.3 47.2 288 64-354 47-340 (340)
6 2pbi_B Guanine nucleotide-bind 1.0 1 1 326.8 45.4 289 64-354 56-354 (354)
7 3dm0_A Maltose-binding peripla 1.0 1 1 324.3 44.7 292 63-357 373-693 (694)
8 4g56_B MGC81050 protein; prote 1.0 1 1 323.4 36.6 292 68-362 38-348 (357)
9 2ymu_A WD-40 repeat protein; u 1.0 1 1 322.3 44.8 31 70-100 14-44 (577)
10 3fm0_A Protein CIAO1; WDR39,SG 1.0 1 1 322.3 43.5 296 64-360 7-338 (345)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=352.04 Aligned_cols=289 Identities=22% Similarity=0.419 Sum_probs=273.9
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 97506888776999993899989999789909999099983389870379888999991799989999599949999779
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~ 144 (643)
...+.+|.+.|++++|++++.+|++++.|+.|+|||..+++....+.+|.+.|++++|++++++|++++.|+.|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 07661667768999996999989999389859999899993778881667868789985999999999189819999589
Q ss_pred CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 98057853488888579999459998999949991999977998245686026988489999599998999978990999
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~i 224 (643)
+.+....+..|...|.+++|++++.+|++++.|++|++||+.++..+..+.+|...|.++.+++++.+|++++.|+.|++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEE
T ss_conf 98266998289997789999679999999968996999989999489999278862899999899999999918990999
Q ss_pred EECCCCCEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECCCCEEEEECCCCEEEEEEECCCCC
Q ss_conf 988999316796368986799999499--------------------999999979992999987998677795068888
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 225 wd~~s~~~~~~~~~~~~~i~~i~~sp~--------------------g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
||+++++....+..|...|.+++|+++ +.+|++++.|+.|++||+++++++..+.+|...
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 98989743667337874589999858655431012125555566788889999938984999988999669999778885
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 37999906999899999689959999779996508980335866489999399999999978993999935
Q 006497 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 285 I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
|++++|++ ++.+|++++.|+.|++||+........ ...|...|++++|++++.+|++++.|++|++|++
T Consensus 341 v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 341 VRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEE-EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 89999949-989999995979299998999906899-8477786899998289999999927994899737
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=342.21 Aligned_cols=345 Identities=19% Similarity=0.338 Sum_probs=201.1
Q ss_pred CHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCEEEC---------------EEEEEECCCCCCE
Q ss_conf 4045687432478863267673100239021203853147616999840100---------------7997506888776
Q 006497 11 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAK---------------FVHTSLNKNRCSI 75 (643)
Q Consensus 11 ~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~h~~~I 75 (643)
.|..+...+..+|+|+....+.... .....+...+..+++..+........ .....+.+|...|
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 150 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred CEEEEEECCCCEEEEECCCCCCEEE-EEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCEECCCCCCC
T ss_conf 6899994899789948989841566-762255784489998999997999989977366999963899763254788983
Q ss_pred EEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-
Q ss_conf 9999938999-89999789909999099983389870379888999991799989999599949999779980578534-
Q 006497 76 NRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS- 153 (643)
Q Consensus 76 ~~i~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~- 153 (643)
++++|++++. +|++++.|+.|++||..+.+....+.+|...|++++|++++++|++++.|+.|++||..+++....+.
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred EEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC
T ss_conf 69998899982999992898099997999757665200257169999979999899998999199988999828665136
Q ss_pred ------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEE-----------------------------------
Q ss_conf ------888885799994599989999499919999779982456-----------------------------------
Q 006497 154 ------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER----------------------------------- 192 (643)
Q Consensus 154 ------~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~----------------------------------- 192 (643)
.|...|.+++|++++++|++++.|++|++||+.+.+.+.
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 64323566787899999799999999908980999968887013440478876640689997388799995899689996
Q ss_pred --------EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-CC-------------------------
Q ss_conf --------86026988489999599998999978990999988999316796-36-------------------------
Q 006497 193 --------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HG------------------------- 238 (643)
Q Consensus 193 --------~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~-~~------------------------- 238 (643)
.+.+|...|++++|++++++|++++.|+.|++||+++++....+ ..
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v 390 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 390 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCE
T ss_conf 88997446983788888999991899989999589849999788792563216677650789998789969999848966
Q ss_pred --------------------------------------------------------CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf --------------------------------------------------------898679999949999999997999
Q 006497 239 --------------------------------------------------------HKNMVLCVKWNQNGNWVLTASKDQ 262 (643)
Q Consensus 239 --------------------------------------------------------~~~~i~~i~~sp~g~~l~s~s~dg 262 (643)
+...+.+++|++++++|++++.|+
T Consensus 391 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~ 470 (611)
T 1nr0_A 391 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 470 (611)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 89546885435652120014899707998079969999967639998489434640688954999928998999968997
Q ss_pred CEEEEECCCCEE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE--EECCCCCCEEEEEECCCC
Q ss_conf 299998799867--7795068888379999069998999996899599997799965089--803358664899993999
Q 006497 263 IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE--IHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 263 ~I~iwd~~~~~~--~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~d~ 338 (643)
.|++||+...+. +.. ..|...|++++|++ ++.+|++++.|+.|++|++........ ....|...|++++|++|+
T Consensus 471 ~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 471 KVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp EEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEC-CCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCC
T ss_conf 39999945992224101-57788607999989-99989999489989998857787223210264046642589989989
Q ss_pred CEEEEEECCCEEEEEECCCC
Q ss_conf 99999978993999935799
Q 006497 339 YLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 339 ~~L~sgs~Dg~I~iWd~~~~ 358 (643)
++|++++.|++|++|+++..
T Consensus 549 ~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 549 VRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp SEEEEEETTSCEEEEETTCT
T ss_pred CEEEEEECCCCEEEEECCCC
T ss_conf 97999979972999978875
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=334.38 Aligned_cols=291 Identities=22% Similarity=0.348 Sum_probs=270.4
Q ss_pred EEEEEECCCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 799750688877699999389----99899997899099990999833--898703798889999917999899995999
Q 006497 63 FVHTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spd----g~~L~tgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg 136 (643)
.+.+.+.+|.+.|++++|+++ +.+|++|+.|+.|+||+..+.+. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred HEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 04552156889679999824888888889998499989998898997436660056778889999889999899993798
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 49999779980578534888885799994599989999499919999779982456860269884899995999989999
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 137 ~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg 216 (643)
.|++||+.+++....+..+...+.+++|++++++|++++.|+.|++||+++.+....+..+...+.+++|++++++|+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEE
T ss_conf 09999789997989993798567999999999989998389919999867994667743899429999998999999999
Q ss_pred ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 78990999988999316796368986799999499999999979992999987998677795068888379999069998
Q 006497 217 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 296 (643)
Q Consensus 217 ~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~ 296 (643)
+.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++.+.+..+.+|...|.+++|++ ++.
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~ 261 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDT 261 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECC-CCC
T ss_conf 2898399999999909999802589601899948999899990998099987899632589868888268999979-999
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 99999689959999779996508980335866489999399999999978993999935
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
+|++++.|+.|++||+++...... +..|...|++++|++++.+|++++.|+.|++||.
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEECCCCEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 899981898099994999888889-8378773899999899999999758980899957
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=333.24 Aligned_cols=296 Identities=22% Similarity=0.388 Sum_probs=264.2
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 07997506888776999993899989999789909999099983389870379888999991799989999599949999
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iw 141 (643)
.....++.+|.+.|++++|++++++|++++.|+.|+|||..+.+....+..|...|.+++|++++++|++++.|+.|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred EEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 39820000453477899996899989999189809998788886014885599878999998999989995479858999
Q ss_pred ECCCCC-------EEEEECCCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCCEEEEEE-----ECCCCCEEEEEECC
Q ss_conf 779980-------578534888885799994599-98999949991999977998245686-----02698848999959
Q 006497 142 QNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHP 208 (643)
Q Consensus 142 d~~~~~-------~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~-----~~~~~~V~~i~~sp 208 (643)
++.... ....+.+|...|.++.|.+++ ..|++++.|++|++||+.+++.+..+ .+|...|.+++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEC
T ss_conf 89777555677331264068975468999964899789997799819999867795789960566788756769999206
Q ss_pred -CCCEEEEEECCCCEEEEECC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC---
Q ss_conf -99989999789909999889-9931679636898679999949999999997999299998799867779506888---
Q 006497 209 -TKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK--- 283 (643)
Q Consensus 209 -~~~~l~sg~~dg~I~iwd~~-s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--- 283 (643)
++++|++++.|+.|++||++ ..+.+..+.+|...|++++|++++++|++++.|+.|++||+++++.+..+..+..
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 99998999978986999978889734699887488757999916999699983899699998889968898615655566
Q ss_pred ----CEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf ----837999906999899999689959999779996508980---3358664899993999999999789939999357
Q 006497 284 ----DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 284 ----~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
.|++++|++ ++.+|++++.||.|++||.........+. ..|...|++++|++++.+|++++.|++|++|++.
T Consensus 296 ~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 296 NELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 5568638999889-999899997999799998877815789702367777845799989999989996089988999537
Q ss_pred CC
Q ss_conf 99
Q 006497 357 RP 358 (643)
Q Consensus 357 ~~ 358 (643)
..
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
T ss_conf 87
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=331.29 Aligned_cols=288 Identities=24% Similarity=0.383 Sum_probs=265.5
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 99750688877699999389998999978990999909998338987037988899999179998999959994999977
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~ 143 (643)
...++.+|.+.|++++|++++++|++++.|+.|+|||..+++....+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred HHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 10010487783689998899999999818896899989998743376038861889999999999999808981999979
Q ss_pred CCC----CEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 998----0578534888885799994599989999499919999779982456860269884899995999989999789
Q 006497 144 NMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 144 ~~~----~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~d 219 (643)
.+. .....+..|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+++++++++++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 66888613677844877638999987999-69999899929999899991889976999866899998999999999389
Q ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC--CCCEEEEEEECCCCCE
Q ss_conf 90999988999316796368986799999499999999979992999987998677795068--8883799990699989
Q 006497 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEY 297 (643)
Q Consensus 220 g~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~I~~i~~sp~~~~~ 297 (643)
+.|++||+++++.+..+..|...|++++|++++++|++++.|+.|++||+++.+.+..+... ...|++++|++ ++.+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 284 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSE
T ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEECC-CCCE
T ss_conf 939997789981678974876877999994999989997489819999889991899972688524169999989-9999
Q ss_pred EEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 999968995999977999650898033586648999939999999997899399993
Q 006497 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
|++++.|+.|++||+..... .....+|...|++++|++++.+|++++.|+.|++|+
T Consensus 285 l~~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCEEEEEECCCCCE-EEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 99977999099988413838-658505778488999829999899972886189559
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=326.79 Aligned_cols=289 Identities=25% Similarity=0.407 Sum_probs=264.4
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 99750688877699999389998999978990999909998338987037988899999179998999959994999977
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~ 143 (643)
....+.+|.+.|++++|++++++|++++.|+.|+|||..+.+....+..|...|.+++|++++.+|++++.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 87996488980889999899998999928982999989998753577427887799999899997997138998899997
Q ss_pred CCC------CEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECC--CCCEEEE
Q ss_conf 998------05785348888857999945999899994999199997799824568602698848999959--9998999
Q 006497 144 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVS 215 (643)
Q Consensus 144 ~~~------~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp--~~~~l~s 215 (643)
... .....+..|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred ECCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCEEEE
T ss_conf 42566553333116306678478999968999999991899589976777819999927899869999875799999999
Q ss_pred EECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC--CCCEEEEEEECC
Q ss_conf 978990999988999316796368986799999499999999979992999987998677795068--888379999069
Q 006497 216 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPF 293 (643)
Q Consensus 216 g~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~I~~i~~sp~ 293 (643)
++.|+.|++||+++++.+..+..|...|++++|++++++|++++.|+.|++||++..+.+..+..+ ...+.+++|++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~- 294 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEEC-
T ss_conf 9479959999888992779835887881799995899989999699819999888996788874787403455999947-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9989999968995999977999650898033586648999939999999997899399993
Q 006497 294 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 294 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
++.+|++++.|+.|++||+.+.... .....|...|++++|++++.+|++++.|++|++|+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCEEEEECCCCCEE-EEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 9999999978992999989889557-79987899578999989999999982888889619
No 7
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=324.27 Aligned_cols=292 Identities=20% Similarity=0.331 Sum_probs=253.7
Q ss_pred EEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 7997506888776999993899-98999978990999909998-----33898703798889999917999899995999
Q 006497 63 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg 136 (643)
.....+++|.+.|++++|++++ ++|++++.|+.|+||++.+. .....+.+|...|++++|++++++|++++.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 41211046774069998669988889998089948999756887555533324258888479999979999999980899
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEE---ECCCCCEEEEEECCCC--C
Q ss_conf 4999977998057853488888579999459998999949991999977998245686---0269884899995999--9
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTK--S 211 (643)
Q Consensus 137 ~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~---~~~~~~V~~i~~sp~~--~ 211 (643)
.|++||+.++.....+..|...|.+++|+++++.|++++.|++|++||+......... ..|...|.+++|++++ .
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred CEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECCCCCC
T ss_conf 28999799995136886799988999990899989999488979999789985404303778887867999991798865
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 89999789909999889993167963689867999994999999999799929999879986777950688883799990
Q 006497 212 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 212 ~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~s 291 (643)
.|++++.|+.|++||+++.+....+.+|...|++++|++++++|++++.|+.|++||+++++.+..+. +...|.+++|+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s 611 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFS 611 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCEEEEEEC
T ss_conf 59999689859999899992789986788888899991898989999589949999889995678833-89947899985
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCEEEEECC------------------CCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 699989999968995999977999650898033------------------58664899993999999999789939999
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------------h~~~V~~l~~s~d~~~L~sgs~Dg~I~iW 353 (643)
+ ++.++++++ ++.|++||++.......+... +...+++++|++++.+|++++.||.|++|
T Consensus 612 p-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 612 P-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689 (694)
T ss_dssp S-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred C-CCCEEEEEC-CCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 9-986899976-99789998999987332002456532002456645677404775148986899989997589849998
Q ss_pred ECCC
Q ss_conf 3579
Q 006497 354 CRNR 357 (643)
Q Consensus 354 d~~~ 357 (643)
++.+
T Consensus 690 ~i~~ 693 (694)
T 3dm0_A 690 GIGR 693 (694)
T ss_dssp EC--
T ss_pred ECCC
T ss_conf 5357
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=323.38 Aligned_cols=292 Identities=19% Similarity=0.286 Sum_probs=252.1
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCC----EEEEECCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 0688877699999389998999978------9909999099983----38987037988899999179998999959994
Q 006497 68 LNKNRCSINRVLWTPTGRRLITGSQ------SGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~tgs~------dg~I~iwd~~~~~----~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~ 137 (643)
...|+..|++++|+|||++|++++. |+.|++|+..++. .......|...|++++|++++. +++++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCC-EEEEECCCE
T ss_conf 4421078899999899999999828987132686999789998714058502478879879999968998-999989998
Q ss_pred EEEEECCCCCEEE----EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCC-E
Q ss_conf 9999779980578----5348888857999945999899994999199997799824568602698848999959999-8
Q 006497 138 IKYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-L 212 (643)
Q Consensus 138 I~iwd~~~~~~~~----~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~-~ 212 (643)
|++||+.+++... ....|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|++++|++++. +
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCE
T ss_conf 99934456640478742137888988999997998999999698939999899995999982778978899983688722
Q ss_pred EEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 999978990999988999316796--368986799999499-99999997999299998799867779506888837999
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289 (643)
Q Consensus 213 l~sg~~dg~I~iwd~~s~~~~~~~--~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~ 289 (643)
+++++.|+.|++||+++++.+..+ ..+...+.+++|+++ +.+|++++.|+.|++||+++.+.+..+..|...|++++
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred EEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 66550578638878899964012330023344421111213530599821354206898999958289935531387799
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 90699989999968995999977999650898033586648999939-99999999789939999357999953
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~L~sgs~Dg~I~iWd~~~~~~~~ 362 (643)
|++++..+|++++.|+.|++||++..+. ... ..|.+.|++++|+| ++.+|++++.|++|++|++...++..
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFSEV-FRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSCEE-EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred ECCCCCCEEEEEECCCEEEEEECCCCCE-EEE-CCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
T ss_conf 7689998999995899799998999958-697-88999889999958999999999189959999779998433
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=322.30 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=9.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 8887769999938999899997899099990
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWN 100 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd 100 (643)
+|++.|++++|++|+++||+++.|+.|+|||
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd 44 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 8998579999989989999993899899997
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=322.26 Aligned_cols=296 Identities=22% Similarity=0.442 Sum_probs=254.5
Q ss_pred EEEEECCCCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE---EECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 9975068887-76999993899989999789909999099983389---8703798889999917999899995999499
Q 006497 64 VHTSLNKNRC-SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139 (643)
Q Consensus 64 ~~~~l~~h~~-~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~---~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~ 139 (643)
+..++.+|.. .|.+++|++++++|++++.|+.|+|||..+.+... ...+|...|++++|++++++|++++.|+.|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 73003488877679999999999999981898399987479852343550324688689999979999999998899099
Q ss_pred EEECCCCC--EEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCE---EEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 99779980--578534888885799994599989999499919999779982---4568602698848999959999899
Q 006497 140 YWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 140 iwd~~~~~--~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~---~~~~~~~~~~~V~~i~~sp~~~~l~ 214 (643)
+|+.+... ....+.+|...|.+++|++++++|++++.|+.|++||+.... .+..+..|...|.+++|++++++|+
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 99816997699898137878826999928999999998999099988789998089999527678868999999999999
Q ss_pred EEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---------------CEEEEE
Q ss_conf 99789909999889993--1679636898679999949999999997999299998799---------------867779
Q 006497 215 SGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------------MKELES 277 (643)
Q Consensus 215 sg~~dg~I~iwd~~s~~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~---------------~~~~~~ 277 (643)
+++.|+.|++||+++++ ....+.+|...|++++|++++++|++++.|+.|++||... .+++..
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EEECCCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCEEECCCCCCCEEEE
T ss_conf 99489809999936997799999257778567999999999899980899299951536888765056336786333688
Q ss_pred EEC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCC--------EEEEECCCCCCEEEEEECCCC-CEEEEEECC
Q ss_conf 506-8888379999069998999996899599997799965--------089803358664899993999-999999789
Q 006497 278 FRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIG-YLLCSGSND 347 (643)
Q Consensus 278 ~~~-~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~s~d~-~~L~sgs~D 347 (643)
+.. |...|.+++|++ ++..|++++.|+.|++|+.+.... .......|...|++++|++++ .+|++++.|
T Consensus 247 ~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp ECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred ECCCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 1477888477889915-799999974798189999278788630258987400445468675747837995599982799
Q ss_pred CEEEEEECCCCCC
Q ss_conf 9399993579999
Q 006497 348 HTTKFWCRNRPGD 360 (643)
Q Consensus 348 g~I~iWd~~~~~~ 360 (643)
|+|++|++.....
T Consensus 326 g~v~~W~~~~~~~ 338 (345)
T 3fm0_A 326 GEVAFWKYQRPEG 338 (345)
T ss_dssp SCEEEEEECC---
T ss_pred CCEEEEEECCCCC
T ss_conf 8199998448998
Done!