Query 006498
Match_columns 643
No_of_seqs 243 out of 1374
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-223 5E-228 1772.5 49.6 560 82-642 8-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 4E-211 8E-216 1711.0 51.9 540 100-643 13-561 (563)
3 PLN03129 NADP-dependent malic 100.0 1E-210 2E-215 1712.2 53.0 543 101-643 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 9E-209 2E-213 1690.9 52.1 539 98-638 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 7E-119 1E-123 952.2 31.7 425 137-643 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1E-110 2E-115 948.7 34.5 370 184-632 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 7E-110 1E-114 946.5 34.6 369 184-632 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 9E-109 2E-113 933.6 34.1 358 184-619 30-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 5.1E-99 1E-103 772.7 29.5 277 359-637 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 6.7E-96 1E-100 741.7 19.3 252 359-612 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 5.5E-93 1.2E-97 719.8 25.8 251 359-611 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 6.7E-84 1.4E-88 625.3 8.5 182 168-349 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 2.7E-58 5.8E-63 459.1 22.3 223 359-611 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.8 3.8E-08 8.2E-13 84.6 11.7 86 361-498 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.7 0.003 6.5E-08 70.0 19.4 160 304-501 105-302 (425)
16 PLN02477 glutamate dehydrogena 97.2 0.014 3E-07 64.6 17.6 185 305-513 112-324 (410)
17 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0015 3.3E-08 71.6 10.2 121 360-501 158-280 (417)
18 PRK09414 glutamate dehydrogena 97.2 0.016 3.5E-07 64.7 17.7 188 305-513 138-357 (445)
19 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0038 8.3E-08 65.8 10.5 136 339-501 139-276 (311)
20 cd00401 AdoHcyase S-adenosyl-L 97.0 0.0084 1.8E-07 66.3 13.4 129 351-513 163-302 (413)
21 TIGR00936 ahcY adenosylhomocys 96.9 0.013 2.7E-07 64.9 13.5 128 351-511 156-293 (406)
22 PRK00045 hemA glutamyl-tRNA re 96.9 0.004 8.8E-08 68.3 9.6 120 361-501 161-283 (423)
23 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.013 2.8E-07 59.4 11.9 130 362-513 2-140 (217)
24 PRK14031 glutamate dehydrogena 96.8 0.041 8.8E-07 61.6 16.7 182 305-501 134-347 (444)
25 PRK14982 acyl-ACP reductase; P 96.8 0.01 2.2E-07 64.2 11.5 113 362-502 134-250 (340)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.014 3E-07 57.1 10.6 90 368-501 29-119 (168)
27 PLN02494 adenosylhomocysteinas 96.6 0.023 5E-07 64.0 13.2 131 351-514 215-355 (477)
28 TIGR02853 spore_dpaA dipicolin 96.6 0.018 3.9E-07 60.5 11.2 139 359-526 127-265 (287)
29 PF01488 Shikimate_DH: Shikima 96.6 0.0037 7.9E-08 58.2 5.3 102 379-502 8-113 (135)
30 PTZ00079 NADP-specific glutama 96.5 0.21 4.6E-06 56.2 19.2 180 305-502 143-358 (454)
31 PRK14030 glutamate dehydrogena 96.4 0.13 2.7E-06 57.8 17.2 189 305-513 134-357 (445)
32 PLN00203 glutamyl-tRNA reducta 96.1 0.02 4.3E-07 65.1 9.2 201 361-614 243-455 (519)
33 PRK08306 dipicolinate synthase 96.1 0.046 1E-06 57.6 11.1 132 365-526 134-266 (296)
34 cd01075 NAD_bind_Leu_Phe_Val_D 96.1 0.04 8.6E-07 54.9 10.0 123 361-513 4-129 (200)
35 COG0373 HemA Glutamyl-tRNA red 96.0 0.034 7.4E-07 61.7 10.1 214 339-616 139-362 (414)
36 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.14 3.1E-06 53.5 13.6 133 361-513 16-167 (254)
37 PRK14192 bifunctional 5,10-met 95.9 0.046 9.9E-07 57.7 9.9 97 361-501 137-235 (283)
38 PTZ00075 Adenosylhomocysteinas 95.8 0.14 3.1E-06 57.8 13.7 122 351-500 215-343 (476)
39 PRK13940 glutamyl-tRNA reducta 95.8 0.034 7.5E-07 61.5 8.7 131 340-501 143-276 (414)
40 PRK08293 3-hydroxybutyryl-CoA 95.7 0.24 5.2E-06 51.4 14.4 191 384-630 4-221 (287)
41 PLN00106 malate dehydrogenase 95.7 0.061 1.3E-06 57.8 10.0 131 368-514 4-152 (323)
42 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.087 1.9E-06 53.8 10.7 123 360-501 8-140 (227)
43 PRK14175 bifunctional 5,10-met 95.5 0.055 1.2E-06 57.4 8.7 85 361-483 136-221 (286)
44 PRK12549 shikimate 5-dehydroge 95.5 0.043 9.4E-07 57.5 7.9 90 368-474 112-203 (284)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.5 0.09 1.9E-06 51.2 9.6 92 362-474 7-108 (194)
46 cd01065 NAD_bind_Shikimate_DH 95.2 0.069 1.5E-06 49.4 7.5 113 368-501 4-120 (155)
47 TIGR00518 alaDH alanine dehydr 95.2 0.075 1.6E-06 57.8 8.7 95 381-499 165-268 (370)
48 PRK00676 hemA glutamyl-tRNA re 94.6 0.18 3.8E-06 54.9 9.7 122 339-502 136-265 (338)
49 TIGR01809 Shik-DH-AROM shikima 94.6 0.086 1.9E-06 55.1 7.0 95 368-482 108-209 (282)
50 PF03807 F420_oxidored: NADP o 94.5 0.077 1.7E-06 45.6 5.4 95 385-500 1-96 (96)
51 PF00670 AdoHcyase_NAD: S-aden 94.2 0.34 7.3E-06 47.8 9.7 121 360-513 3-123 (162)
52 PF00208 ELFV_dehydrog: Glutam 93.8 0.14 2.9E-06 53.0 6.4 130 358-501 6-151 (244)
53 PRK10792 bifunctional 5,10-met 93.6 0.7 1.5E-05 49.2 11.5 92 363-498 139-231 (285)
54 cd05296 GH4_P_beta_glucosidase 93.6 0.13 2.8E-06 57.1 6.3 125 384-524 1-166 (419)
55 TIGR02356 adenyl_thiF thiazole 93.5 0.13 2.9E-06 51.2 5.7 38 379-427 17-54 (202)
56 PRK09424 pntA NAD(P) transhydr 93.3 0.34 7.5E-06 55.2 9.1 180 290-508 82-296 (509)
57 PRK05086 malate dehydrogenase; 93.3 0.42 9.1E-06 50.9 9.3 105 384-501 1-121 (312)
58 PRK06130 3-hydroxybutyryl-CoA 93.2 2.8 6E-05 43.8 15.1 121 384-530 5-142 (311)
59 cd00650 LDH_MDH_like NAD-depen 93.2 0.21 4.5E-06 51.3 6.6 129 386-529 1-148 (263)
60 PRK06129 3-hydroxyacyl-CoA deh 93.1 0.28 6E-06 51.5 7.6 38 537-574 184-221 (308)
61 PF00056 Ldh_1_N: lactate/mala 93.0 0.058 1.2E-06 50.9 2.2 104 385-501 2-121 (141)
62 PRK08605 D-lactate dehydrogena 93.0 1.5 3.2E-05 47.2 12.9 153 315-499 59-237 (332)
63 TIGR02354 thiF_fam2 thiamine b 93.0 0.19 4E-06 50.4 5.8 108 379-506 17-127 (200)
64 cd05212 NAD_bind_m-THF_DH_Cycl 92.9 0.91 2E-05 43.5 10.1 83 364-483 9-91 (140)
65 PRK08328 hypothetical protein; 92.9 0.063 1.4E-06 54.6 2.4 120 345-502 7-131 (231)
66 PTZ00325 malate dehydrogenase; 92.7 0.71 1.5E-05 49.7 10.1 106 381-501 6-128 (321)
67 PRK14191 bifunctional 5,10-met 92.7 0.47 1E-05 50.6 8.6 83 363-483 137-220 (285)
68 PRK07531 bifunctional 3-hydrox 92.6 1.7 3.6E-05 49.1 13.3 123 384-531 5-144 (495)
69 cd05291 HicDH_like L-2-hydroxy 92.5 0.44 9.6E-06 50.2 8.2 126 385-526 2-144 (306)
70 PRK12749 quinate/shikimate deh 92.3 0.32 7E-06 51.3 6.7 49 368-427 109-157 (288)
71 PRK00066 ldh L-lactate dehydro 92.1 0.37 8E-06 51.4 6.9 126 384-526 7-149 (315)
72 PRK06035 3-hydroxyacyl-CoA deh 92.0 2.3 4.9E-05 44.3 12.5 32 384-427 4-35 (291)
73 PRK08223 hypothetical protein; 92.0 0.34 7.4E-06 51.6 6.5 57 342-427 4-60 (287)
74 PLN02928 oxidoreductase family 91.9 1.8 3.8E-05 47.0 11.9 139 360-522 120-284 (347)
75 PRK00257 erythronate-4-phospha 91.7 1.4 3.1E-05 48.5 11.1 158 362-560 95-264 (381)
76 cd05197 GH4_glycoside_hydrolas 91.6 0.44 9.6E-06 53.1 7.1 125 384-524 1-166 (425)
77 PRK05600 thiamine biosynthesis 91.4 0.54 1.2E-05 51.4 7.5 118 345-496 19-162 (370)
78 PRK09260 3-hydroxybutyryl-CoA 91.3 0.46 9.9E-06 49.3 6.6 126 384-531 2-145 (288)
79 PRK14027 quinate/shikimate deh 91.3 0.45 9.6E-06 50.2 6.4 49 368-427 112-160 (283)
80 cd05297 GH4_alpha_glucosidase_ 91.3 0.62 1.3E-05 51.6 7.8 126 385-526 2-170 (423)
81 cd01079 NAD_bind_m-THF_DH NAD 91.1 1.5 3.2E-05 44.7 9.6 103 364-483 34-147 (197)
82 PRK08762 molybdopterin biosynt 90.9 0.44 9.5E-06 51.8 6.2 37 380-427 132-168 (376)
83 cd01487 E1_ThiF_like E1_ThiF_l 90.9 0.77 1.7E-05 44.9 7.3 32 385-427 1-32 (174)
84 PRK15076 alpha-galactosidase; 90.9 0.58 1.3E-05 52.2 7.2 129 384-528 2-174 (431)
85 PRK12475 thiamine/molybdopteri 90.8 0.34 7.4E-06 52.3 5.2 39 379-428 20-58 (338)
86 PRK12548 shikimate 5-dehydroge 90.7 0.58 1.3E-05 49.1 6.7 57 352-427 103-159 (289)
87 PRK04346 tryptophan synthase s 90.7 4.6 0.0001 44.9 13.8 98 274-404 20-128 (397)
88 PRK14619 NAD(P)H-dependent gly 90.5 2.3 5E-05 44.7 11.0 33 383-427 4-36 (308)
89 PTZ00117 malate dehydrogenase; 90.5 1.3 2.9E-05 47.2 9.2 126 382-525 4-148 (319)
90 PRK15438 erythronate-4-phospha 90.4 2.5 5.4E-05 46.7 11.4 117 360-512 93-217 (378)
91 PRK00258 aroE shikimate 5-dehy 90.3 0.7 1.5E-05 48.1 6.8 88 367-474 106-196 (278)
92 PTZ00082 L-lactate dehydrogena 90.2 0.88 1.9E-05 48.7 7.6 125 383-525 6-154 (321)
93 PRK14189 bifunctional 5,10-met 90.0 1.2 2.6E-05 47.5 8.3 83 363-483 138-221 (285)
94 PRK14194 bifunctional 5,10-met 89.9 1.3 2.8E-05 47.6 8.6 92 363-498 139-231 (301)
95 cd00704 MDH Malate dehydrogena 89.8 1.4 3.1E-05 47.3 8.8 110 385-501 2-129 (323)
96 COG0578 GlpA Glycerol-3-phosph 89.8 2.3 5E-05 49.0 10.9 163 381-616 10-179 (532)
97 PRK07878 molybdopterin biosynt 89.7 0.75 1.6E-05 50.5 6.8 38 379-427 38-75 (392)
98 PRK14176 bifunctional 5,10-met 89.7 1.5 3.2E-05 46.9 8.7 84 362-483 143-227 (287)
99 PF00899 ThiF: ThiF family; I 89.6 0.62 1.3E-05 43.0 5.2 35 382-427 1-35 (135)
100 PRK14178 bifunctional 5,10-met 89.6 1.1 2.4E-05 47.7 7.6 83 362-482 131-214 (279)
101 PRK06223 malate dehydrogenase; 89.2 1.1 2.3E-05 47.0 7.1 127 384-528 3-148 (307)
102 PRK14851 hypothetical protein; 89.1 1.5 3.2E-05 51.8 8.9 122 379-517 39-194 (679)
103 cd00755 YgdL_like Family of ac 88.9 0.8 1.7E-05 47.1 5.9 123 380-524 8-134 (231)
104 COG0169 AroE Shikimate 5-dehyd 88.8 0.99 2.1E-05 48.0 6.6 85 369-474 110-201 (283)
105 PRK07688 thiamine/molybdopteri 88.8 0.59 1.3E-05 50.5 5.0 38 379-427 20-57 (339)
106 TIGR02992 ectoine_eutC ectoine 88.6 2.1 4.6E-05 45.7 9.0 115 369-510 117-237 (326)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 88.5 0.44 9.5E-06 45.4 3.5 85 385-489 1-93 (157)
108 cd01337 MDH_glyoxysomal_mitoch 88.1 2.5 5.4E-05 45.4 9.2 102 385-501 2-120 (310)
109 PF02056 Glyco_hydro_4: Family 88.1 0.87 1.9E-05 45.6 5.4 109 385-507 1-151 (183)
110 PF02826 2-Hacid_dh_C: D-isome 88.0 1.4 3.1E-05 42.8 6.7 117 374-522 27-149 (178)
111 TIGR01915 npdG NADPH-dependent 87.9 2.3 4.9E-05 42.6 8.2 96 385-503 2-106 (219)
112 PF01262 AlaDh_PNT_C: Alanine 87.9 0.22 4.7E-06 48.0 0.9 89 381-486 18-130 (168)
113 cd05298 GH4_GlvA_pagL_like Gly 87.8 1.1 2.4E-05 50.2 6.5 130 384-528 1-171 (437)
114 TIGR01763 MalateDH_bact malate 87.7 1.3 2.9E-05 47.0 6.8 124 384-525 2-144 (305)
115 TIGR01758 MDH_euk_cyt malate d 87.5 3.8 8.2E-05 44.2 10.1 136 385-530 1-156 (324)
116 TIGR00561 pntA NAD(P) transhyd 87.5 1.4 2.9E-05 50.6 7.1 176 289-499 80-285 (511)
117 cd01336 MDH_cytoplasmic_cytoso 87.4 4.1 8.8E-05 43.9 10.2 135 384-528 3-157 (325)
118 PRK08374 homoserine dehydrogen 86.6 3.8 8.2E-05 44.3 9.6 104 384-495 3-120 (336)
119 COG0334 GdhA Glutamate dehydro 86.5 17 0.00037 40.9 14.6 179 303-502 110-317 (411)
120 PLN02306 hydroxypyruvate reduc 86.4 5.4 0.00012 44.1 10.8 196 349-580 107-345 (386)
121 PRK14183 bifunctional 5,10-met 86.2 3 6.6E-05 44.5 8.4 84 362-483 136-220 (281)
122 PRK07634 pyrroline-5-carboxyla 86.2 1.8 3.9E-05 43.3 6.5 118 382-524 3-121 (245)
123 PRK12550 shikimate 5-dehydroge 86.2 1.7 3.7E-05 45.7 6.5 82 368-474 108-189 (272)
124 TIGR00872 gnd_rel 6-phosphoglu 86.2 2.7 5.8E-05 44.2 8.0 99 385-509 2-102 (298)
125 PRK14618 NAD(P)H-dependent gly 86.1 1.2 2.6E-05 47.0 5.4 32 384-427 5-36 (328)
126 PRK14190 bifunctional 5,10-met 86.0 3.2 6.9E-05 44.3 8.5 83 363-483 138-221 (284)
127 PRK11880 pyrroline-5-carboxyla 85.9 3.3 7.1E-05 42.2 8.3 121 384-532 3-123 (267)
128 PRK14184 bifunctional 5,10-met 85.8 2.8 6E-05 44.9 7.9 87 363-483 137-224 (286)
129 PRK08644 thiamine biosynthesis 85.5 0.92 2E-05 45.8 4.0 104 379-502 24-130 (212)
130 PRK14106 murD UDP-N-acetylmura 85.5 2.8 6.2E-05 45.8 8.1 114 380-525 2-116 (450)
131 COG0111 SerA Phosphoglycerate 85.3 7.4 0.00016 42.1 10.9 101 361-486 102-224 (324)
132 PRK14179 bifunctional 5,10-met 85.1 3.5 7.6E-05 44.1 8.2 82 363-482 138-220 (284)
133 cd01338 MDH_choloroplast_like 84.8 5.3 0.00011 43.0 9.5 111 384-501 3-131 (322)
134 TIGR01772 MDH_euk_gproteo mala 84.7 5.8 0.00013 42.7 9.7 126 385-525 1-146 (312)
135 cd00757 ThiF_MoeB_HesA_family 84.7 1.1 2.5E-05 45.2 4.2 104 379-501 17-123 (228)
136 PRK13243 glyoxylate reductase; 84.5 11 0.00023 40.7 11.7 141 378-553 145-291 (333)
137 COG0686 Ald Alanine dehydrogen 84.4 1.4 3E-05 48.0 4.9 109 381-510 166-290 (371)
138 PRK14174 bifunctional 5,10-met 84.4 3.6 7.7E-05 44.2 8.0 86 364-483 140-226 (295)
139 PRK07066 3-hydroxybutyryl-CoA 84.3 2.8 6.1E-05 45.2 7.2 32 384-427 8-39 (321)
140 PRK08291 ectoine utilization p 84.1 4.1 8.8E-05 43.6 8.3 115 369-510 120-240 (330)
141 PRK14188 bifunctional 5,10-met 83.9 3.7 8E-05 44.0 7.8 81 363-481 138-219 (296)
142 PRK15116 sulfur acceptor prote 83.8 3.6 7.8E-05 43.5 7.6 108 379-504 26-136 (268)
143 TIGR02355 moeB molybdopterin s 83.8 1.3 2.8E-05 45.6 4.2 104 379-502 20-127 (240)
144 PRK00094 gpsA NAD(P)H-dependen 83.7 2.2 4.8E-05 44.2 6.0 98 385-502 3-109 (325)
145 PRK01710 murD UDP-N-acetylmura 83.6 7.1 0.00015 43.4 10.2 113 381-525 12-125 (458)
146 cd01339 LDH-like_MDH L-lactate 83.1 2.7 5.9E-05 44.1 6.4 117 386-525 1-141 (300)
147 PRK14177 bifunctional 5,10-met 83.0 5.4 0.00012 42.7 8.6 82 364-483 140-222 (284)
148 cd05290 LDH_3 A subgroup of L- 82.9 3.8 8.2E-05 43.8 7.4 102 385-501 1-122 (307)
149 PF02882 THF_DHG_CYH_C: Tetrah 82.7 6.3 0.00014 38.7 8.3 83 363-483 16-99 (160)
150 TIGR01759 MalateDH-SF1 malate 82.5 7.2 0.00016 42.1 9.4 122 384-515 4-143 (323)
151 PRK12480 D-lactate dehydrogena 82.3 13 0.00029 40.0 11.4 108 361-499 105-235 (330)
152 PRK14172 bifunctional 5,10-met 82.2 6.3 0.00014 42.1 8.7 83 363-483 138-221 (278)
153 PRK06436 glycerate dehydrogena 82.1 19 0.00041 38.6 12.3 92 378-501 117-212 (303)
154 cd01485 E1-1_like Ubiquitin ac 82.1 1.3 2.9E-05 44.1 3.5 74 379-469 15-94 (198)
155 COG1486 CelF Alpha-galactosida 81.6 1.6 3.5E-05 49.1 4.3 124 382-520 2-166 (442)
156 PRK05690 molybdopterin biosynt 81.4 2 4.3E-05 44.3 4.5 38 379-427 28-65 (245)
157 PRK02472 murD UDP-N-acetylmura 81.2 5.9 0.00013 43.3 8.4 114 381-525 3-116 (447)
158 PTZ00345 glycerol-3-phosphate 81.0 6.4 0.00014 43.3 8.5 24 381-404 9-32 (365)
159 TIGR00507 aroE shikimate 5-deh 80.9 3.9 8.5E-05 42.3 6.5 48 368-427 102-149 (270)
160 PRK07574 formate dehydrogenase 80.9 9.9 0.00021 42.2 10.0 116 378-524 187-308 (385)
161 PRK07530 3-hydroxybutyryl-CoA 80.7 9.3 0.0002 39.7 9.2 32 384-427 5-36 (292)
162 PLN02516 methylenetetrahydrofo 80.7 7.1 0.00015 42.1 8.5 84 362-483 146-230 (299)
163 PRK09310 aroDE bifunctional 3- 80.7 3.4 7.4E-05 46.7 6.5 48 368-427 317-364 (477)
164 PRK12921 2-dehydropantoate 2-r 80.7 3.9 8.4E-05 42.2 6.4 100 385-502 2-106 (305)
165 PLN02545 3-hydroxybutyryl-CoA 80.7 42 0.00091 35.0 14.0 32 384-427 5-36 (295)
166 PRK15469 ghrA bifunctional gly 80.6 15 0.00033 39.3 11.0 177 361-579 98-297 (312)
167 cd01492 Aos1_SUMO Ubiquitin ac 80.6 1.5 3.2E-05 43.8 3.2 77 379-472 17-97 (197)
168 PRK06522 2-dehydropantoate 2-r 80.2 5.1 0.00011 41.1 7.1 97 385-502 2-104 (304)
169 TIGR01408 Ube1 ubiquitin-activ 80.2 0.82 1.8E-05 56.2 1.5 88 314-427 358-457 (1008)
170 PRK05442 malate dehydrogenase; 80.2 12 0.00025 40.6 10.0 121 385-515 6-144 (326)
171 PRK05808 3-hydroxybutyryl-CoA 80.1 11 0.00025 38.9 9.6 32 384-427 4-35 (282)
172 cd01483 E1_enzyme_family Super 80.1 2.5 5.4E-05 39.2 4.3 94 385-500 1-99 (143)
173 TIGR03140 AhpF alkyl hydropero 80.1 4.8 0.0001 45.5 7.4 86 316-404 137-233 (515)
174 PRK08410 2-hydroxyacid dehydro 80.0 16 0.00035 39.0 11.0 135 350-520 85-252 (311)
175 PRK14171 bifunctional 5,10-met 80.0 7.9 0.00017 41.5 8.5 85 361-483 137-222 (288)
176 PRK06476 pyrroline-5-carboxyla 79.7 29 0.00062 35.5 12.3 95 385-501 2-96 (258)
177 PRK14193 bifunctional 5,10-met 79.6 7.9 0.00017 41.4 8.4 85 363-483 138-223 (284)
178 PRK15317 alkyl hydroperoxide r 79.4 2.7 5.9E-05 47.4 5.2 85 331-427 148-243 (517)
179 cd05293 LDH_1 A subgroup of L- 79.4 6.2 0.00013 42.3 7.6 126 384-526 4-147 (312)
180 PRK14187 bifunctional 5,10-met 79.2 9 0.0002 41.2 8.7 83 363-483 140-223 (294)
181 PRK14166 bifunctional 5,10-met 79.2 8.8 0.00019 41.1 8.6 85 361-483 135-220 (282)
182 PRK08268 3-hydroxy-acyl-CoA de 79.2 6.1 0.00013 45.1 7.9 97 462-572 112-222 (507)
183 TIGR01381 E1_like_apg7 E1-like 79.0 1.9 4.2E-05 50.7 3.9 40 379-429 334-373 (664)
184 PRK07231 fabG 3-ketoacyl-(acyl 78.9 6 0.00013 38.7 6.8 75 380-473 2-91 (251)
185 PF07992 Pyr_redox_2: Pyridine 78.6 3.2 6.9E-05 39.4 4.6 31 385-427 1-31 (201)
186 TIGR02371 ala_DH_arch alanine 78.4 12 0.00025 40.3 9.3 104 382-510 127-235 (325)
187 PRK07680 late competence prote 78.2 5.3 0.00011 41.2 6.4 98 385-502 2-100 (273)
188 PRK09599 6-phosphogluconate de 78.2 12 0.00026 39.3 9.1 92 385-500 2-96 (301)
189 TIGR03366 HpnZ_proposed putati 78.0 22 0.00047 36.4 10.8 47 368-426 107-153 (280)
190 PRK14170 bifunctional 5,10-met 77.9 10 0.00022 40.7 8.6 84 362-483 136-220 (284)
191 PRK06487 glycerate dehydrogena 77.8 51 0.0011 35.3 13.9 187 350-580 88-309 (317)
192 PRK09880 L-idonate 5-dehydroge 77.6 39 0.00084 35.6 12.8 45 371-427 159-203 (343)
193 PRK05597 molybdopterin biosynt 77.2 2.9 6.3E-05 45.4 4.4 38 379-427 24-61 (355)
194 KOG0029 Amine oxidase [Seconda 77.2 1.4 2.9E-05 50.4 2.0 25 381-405 13-37 (501)
195 COG0345 ProC Pyrroline-5-carbo 77.2 13 0.00028 39.5 9.0 106 384-516 2-108 (266)
196 PRK07679 pyrroline-5-carboxyla 77.1 31 0.00066 35.8 11.7 99 383-501 3-102 (279)
197 cd05294 LDH-like_MDH_nadp A la 77.0 15 0.00033 39.1 9.7 124 385-525 2-147 (309)
198 PRK00141 murD UDP-N-acetylmura 77.0 11 0.00025 42.1 9.1 91 380-494 12-102 (473)
199 PRK06153 hypothetical protein; 76.9 3.2 6.8E-05 46.3 4.6 162 308-501 111-278 (393)
200 PRK14168 bifunctional 5,10-met 76.9 11 0.00024 40.6 8.5 89 361-483 139-228 (297)
201 PLN03139 formate dehydrogenase 76.8 22 0.00047 39.6 11.0 142 378-552 194-342 (386)
202 PRK02842 light-independent pro 76.6 13 0.00029 41.2 9.4 87 370-471 277-368 (427)
203 PRK01438 murD UDP-N-acetylmura 76.6 6.6 0.00014 43.6 7.1 39 377-427 10-48 (480)
204 KOG0685 Flavin-containing amin 76.6 1.2 2.7E-05 50.5 1.4 26 379-404 17-42 (498)
205 PRK06141 ornithine cyclodeamin 76.6 17 0.00037 38.7 9.9 104 382-510 124-232 (314)
206 PRK13581 D-3-phosphoglycerate 76.2 44 0.00096 38.4 13.6 195 350-582 86-305 (526)
207 PRK10886 DnaA initiator-associ 76.0 9.5 0.00021 38.5 7.4 91 381-486 39-130 (196)
208 KOG0069 Glyoxylate/hydroxypyru 75.9 16 0.00035 40.1 9.5 100 361-486 120-244 (336)
209 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.7 21 0.00045 40.9 10.8 36 538-573 186-221 (503)
210 PRK14185 bifunctional 5,10-met 75.5 14 0.0003 39.9 8.8 87 363-483 137-224 (293)
211 PRK12490 6-phosphogluconate de 75.4 7.5 0.00016 40.8 6.8 94 385-501 2-97 (299)
212 PRK06932 glycerate dehydrogena 74.3 29 0.00063 37.2 10.9 138 379-553 143-289 (314)
213 cd05292 LDH_2 A subgroup of L- 74.0 10 0.00022 40.2 7.5 126 385-527 2-144 (308)
214 TIGR02622 CDP_4_6_dhtase CDP-g 73.4 12 0.00025 39.5 7.6 106 381-498 2-127 (349)
215 PRK14182 bifunctional 5,10-met 73.3 17 0.00036 39.0 8.7 83 363-483 137-220 (282)
216 PRK14180 bifunctional 5,10-met 73.3 16 0.00034 39.2 8.5 85 361-483 136-221 (282)
217 PRK14169 bifunctional 5,10-met 73.3 17 0.00036 39.0 8.7 84 362-483 135-219 (282)
218 TIGR01327 PGDH D-3-phosphoglyc 73.2 93 0.002 35.8 15.2 196 350-582 84-304 (525)
219 PRK06270 homoserine dehydrogen 72.9 29 0.00062 37.6 10.6 105 384-495 3-123 (341)
220 PRK07411 hypothetical protein; 72.5 3.8 8.2E-05 45.1 3.9 38 379-427 34-71 (390)
221 KOG2337 Ubiquitin activating E 72.1 4.7 0.0001 46.5 4.5 165 381-558 338-522 (669)
222 PLN02819 lysine-ketoglutarate 71.7 13 0.00028 46.3 8.5 101 382-487 202-326 (1042)
223 PRK14173 bifunctional 5,10-met 71.7 18 0.00039 38.9 8.5 83 363-483 135-218 (287)
224 PTZ00142 6-phosphogluconate de 71.7 8 0.00017 43.9 6.3 96 385-500 3-103 (470)
225 PF00070 Pyr_redox: Pyridine n 71.5 8.5 0.00018 32.3 5.0 35 385-431 1-35 (80)
226 PRK06823 ornithine cyclodeamin 71.3 24 0.00052 38.0 9.5 105 382-511 127-236 (315)
227 PLN02520 bifunctional 3-dehydr 71.3 8.8 0.00019 44.1 6.6 38 378-427 374-411 (529)
228 PF01494 FAD_binding_3: FAD bi 71.3 5.7 0.00012 40.4 4.6 35 384-430 2-36 (356)
229 cd01484 E1-2_like Ubiquitin ac 71.1 5.6 0.00012 41.1 4.5 32 385-427 1-32 (234)
230 PRK14181 bifunctional 5,10-met 71.0 21 0.00046 38.4 8.9 88 362-483 132-220 (287)
231 PLN02527 aspartate carbamoyltr 71.0 1.2E+02 0.0026 32.7 14.6 131 322-474 93-229 (306)
232 PF02737 3HCDH_N: 3-hydroxyacy 70.9 6.1 0.00013 38.8 4.5 90 385-496 1-111 (180)
233 PRK14167 bifunctional 5,10-met 70.9 20 0.00043 38.7 8.7 87 363-483 137-224 (297)
234 PLN02602 lactate dehydrogenase 70.4 15 0.00032 40.2 7.8 124 384-526 38-181 (350)
235 PRK12439 NAD(P)H-dependent gly 70.3 10 0.00022 40.7 6.5 22 383-404 7-28 (341)
236 COG0039 Mdh Malate/lactate deh 70.3 9.5 0.00021 41.4 6.2 108 384-514 1-126 (313)
237 PLN02616 tetrahydrofolate dehy 70.3 18 0.0004 40.1 8.4 82 364-483 212-294 (364)
238 PRK08229 2-dehydropantoate 2-r 70.2 8.3 0.00018 40.7 5.7 103 384-503 3-112 (341)
239 PRK09754 phenylpropionate diox 69.9 6.4 0.00014 42.6 4.9 36 382-427 2-37 (396)
240 PRK15409 bifunctional glyoxyla 69.9 38 0.00082 36.6 10.6 141 378-553 140-288 (323)
241 TIGR00873 gnd 6-phosphoglucona 69.8 13 0.00029 42.1 7.4 95 385-499 1-99 (467)
242 cd01491 Ube1_repeat1 Ubiquitin 69.7 4.4 9.5E-05 43.2 3.5 38 379-427 15-52 (286)
243 COG1250 FadB 3-hydroxyacyl-CoA 69.6 1.3E+02 0.0028 32.8 14.5 140 455-613 101-249 (307)
244 cd01486 Apg7 Apg7 is an E1-lik 69.5 6 0.00013 42.9 4.4 32 385-427 1-32 (307)
245 PRK11790 D-3-phosphoglycerate 69.2 1E+02 0.0022 34.5 14.0 193 349-582 96-319 (409)
246 PRK14186 bifunctional 5,10-met 69.2 23 0.00049 38.3 8.7 83 363-483 138-221 (297)
247 PF01113 DapB_N: Dihydrodipico 69.0 10 0.00022 35.0 5.3 95 385-496 2-97 (124)
248 cd08237 ribitol-5-phosphate_DH 68.8 1.2E+02 0.0026 32.1 13.9 36 382-427 163-198 (341)
249 PLN02688 pyrroline-5-carboxyla 68.8 17 0.00037 37.0 7.4 104 385-516 2-108 (266)
250 PF13738 Pyr_redox_3: Pyridine 68.7 5.9 0.00013 37.8 3.9 30 387-427 1-30 (203)
251 PRK07502 cyclohexadienyl dehyd 68.3 22 0.00047 37.4 8.2 34 384-427 7-40 (307)
252 PRK04690 murD UDP-N-acetylmura 67.8 18 0.00039 40.6 8.0 92 381-494 6-97 (468)
253 PF02423 OCD_Mu_crystall: Orni 67.7 11 0.00024 40.2 6.0 103 383-510 128-237 (313)
254 cd01488 Uba3_RUB Ubiquitin act 67.6 6.7 0.00014 42.0 4.3 32 385-427 1-32 (291)
255 PF03447 NAD_binding_3: Homose 67.5 11 0.00024 33.8 5.2 88 390-495 1-88 (117)
256 TIGR01771 L-LDH-NAD L-lactate 66.8 14 0.0003 39.4 6.5 124 388-526 1-140 (299)
257 TIGR01214 rmlD dTDP-4-dehydror 66.6 26 0.00057 35.3 8.2 60 385-474 1-61 (287)
258 COG0476 ThiF Dinucleotide-util 66.4 8.6 0.00019 39.4 4.7 38 379-427 26-63 (254)
259 PLN02897 tetrahydrofolate dehy 66.3 24 0.00053 38.9 8.3 83 363-483 194-277 (345)
260 PRK14620 NAD(P)H-dependent gly 65.9 16 0.00034 38.6 6.7 31 385-427 2-32 (326)
261 PRK07877 hypothetical protein; 65.6 13 0.00029 44.5 6.7 101 379-498 103-229 (722)
262 PRK00421 murC UDP-N-acetylmura 65.1 16 0.00035 40.5 6.9 108 382-525 6-115 (461)
263 TIGR01292 TRX_reduct thioredox 64.6 8.2 0.00018 38.8 4.1 31 385-427 2-32 (300)
264 COG1179 Dinucleotide-utilizing 64.5 6.4 0.00014 41.7 3.4 42 380-432 27-68 (263)
265 PRK15181 Vi polysaccharide bio 64.4 33 0.00071 36.4 8.7 105 377-498 9-141 (348)
266 cd01489 Uba2_SUMO Ubiquitin ac 64.3 9.1 0.0002 41.3 4.6 32 385-427 1-32 (312)
267 COG2423 Predicted ornithine cy 63.7 38 0.00083 37.0 9.2 121 366-513 115-241 (330)
268 PF03446 NAD_binding_2: NAD bi 62.7 7.8 0.00017 37.0 3.4 104 384-514 2-108 (163)
269 KOG1495 Lactate dehydrogenase 62.7 27 0.00058 37.9 7.5 130 379-531 16-169 (332)
270 COG0240 GpsA Glycerol-3-phosph 62.6 13 0.00027 40.8 5.3 95 384-498 2-105 (329)
271 PRK12429 3-hydroxybutyrate deh 62.6 25 0.00053 34.6 7.0 35 381-427 2-37 (258)
272 PRK00536 speE spermidine synth 62.5 11 0.00025 39.7 4.9 100 384-527 74-175 (262)
273 PRK07340 ornithine cyclodeamin 62.2 44 0.00094 35.6 9.2 103 381-509 123-229 (304)
274 PRK06928 pyrroline-5-carboxyla 62.1 33 0.00071 35.8 8.1 98 384-501 2-101 (277)
275 COG1052 LdhA Lactate dehydroge 62.0 44 0.00094 36.4 9.2 94 376-499 139-237 (324)
276 PRK01713 ornithine carbamoyltr 61.5 51 0.0011 36.0 9.7 130 323-471 99-233 (334)
277 COG1063 Tdh Threonine dehydrog 61.3 17 0.00036 39.3 5.9 99 357-473 143-248 (350)
278 TIGR02028 ChlP geranylgeranyl 61.3 9.5 0.00021 41.6 4.2 31 385-427 2-32 (398)
279 cd00300 LDH_like L-lactate deh 61.1 25 0.00054 37.3 7.1 123 386-525 1-141 (300)
280 COG0190 FolD 5,10-methylene-te 60.9 26 0.00056 37.7 7.1 119 327-483 90-219 (283)
281 PF05834 Lycopene_cycl: Lycope 60.8 11 0.00023 40.8 4.4 35 386-430 2-36 (374)
282 TIGR01283 nifE nitrogenase mol 60.8 24 0.00053 39.5 7.3 85 371-470 314-402 (456)
283 PRK11883 protoporphyrinogen ox 60.8 5.5 0.00012 42.9 2.2 22 384-405 1-22 (451)
284 PRK13938 phosphoheptose isomer 60.5 27 0.00058 35.3 6.9 105 382-501 44-151 (196)
285 PRK07589 ornithine cyclodeamin 60.4 69 0.0015 35.2 10.5 103 383-510 129-238 (346)
286 PRK05866 short chain dehydroge 60.3 27 0.00059 36.2 7.1 39 378-427 35-73 (293)
287 TIGR01285 nifN nitrogenase mol 60.2 14 0.0003 41.4 5.3 83 372-472 300-382 (432)
288 TIGR01181 dTDP_gluc_dehyt dTDP 60.0 44 0.00095 33.7 8.4 78 385-474 1-84 (317)
289 PRK12828 short chain dehydroge 60.0 20 0.00044 34.5 5.8 36 380-427 4-40 (239)
290 PRK06407 ornithine cyclodeamin 60.0 27 0.00059 37.3 7.2 104 382-510 116-225 (301)
291 PRK12409 D-amino acid dehydrog 59.9 12 0.00025 40.3 4.5 33 384-428 2-34 (410)
292 cd01490 Ube1_repeat2 Ubiquitin 59.9 15 0.00033 41.5 5.5 37 385-427 1-37 (435)
293 cd00377 ICL_PEPM Members of th 59.9 2.2E+02 0.0048 29.5 15.8 44 477-524 183-226 (243)
294 TIGR02023 BchP-ChlP geranylger 59.8 11 0.00024 40.5 4.3 31 385-427 2-32 (388)
295 PF03435 Saccharop_dh: Sacchar 59.6 5 0.00011 43.2 1.7 88 386-495 1-96 (386)
296 TIGR03026 NDP-sugDHase nucleot 59.6 36 0.00079 37.4 8.3 31 385-427 2-32 (411)
297 PRK06719 precorrin-2 dehydroge 59.5 14 0.00029 35.8 4.4 36 380-427 10-45 (157)
298 PRK12570 N-acetylmuramic acid- 59.4 38 0.00081 36.3 8.1 37 463-501 127-165 (296)
299 TIGR02440 FadJ fatty oxidation 59.3 1.4E+02 0.0031 35.6 13.6 156 455-632 403-567 (699)
300 PRK06718 precorrin-2 dehydroge 59.2 13 0.00029 37.2 4.5 35 380-426 7-41 (202)
301 PRK06184 hypothetical protein; 59.1 12 0.00027 41.8 4.6 35 382-428 2-36 (502)
302 PRK07236 hypothetical protein; 58.9 14 0.00031 39.6 4.9 24 381-404 4-27 (386)
303 PRK03803 murD UDP-N-acetylmura 58.9 52 0.0011 36.4 9.4 110 382-525 5-116 (448)
304 PRK06046 alanine dehydrogenase 58.6 63 0.0014 34.7 9.7 103 382-510 128-236 (326)
305 PRK13803 bifunctional phosphor 58.4 2.5E+02 0.0054 33.2 15.2 109 457-577 426-556 (610)
306 PLN00112 malate dehydrogenase 58.4 37 0.00081 38.6 8.2 133 384-526 101-253 (444)
307 PRK05993 short chain dehydroge 58.3 28 0.00061 35.4 6.7 33 383-427 4-37 (277)
308 PLN02240 UDP-glucose 4-epimera 58.2 27 0.00059 36.4 6.8 107 380-498 2-132 (352)
309 TIGR03169 Nterm_to_SelD pyridi 58.0 6.6 0.00014 41.5 2.2 37 385-430 1-37 (364)
310 KOG2304 3-hydroxyacyl-CoA dehy 57.9 9 0.0002 40.5 3.1 32 384-427 12-43 (298)
311 PRK08618 ornithine cyclodeamin 57.8 28 0.0006 37.3 6.8 105 382-513 126-236 (325)
312 PF13454 NAD_binding_9: FAD-NA 57.7 11 0.00023 35.8 3.4 36 387-429 1-36 (156)
313 PRK06847 hypothetical protein; 57.6 14 0.0003 39.0 4.5 33 383-427 4-36 (375)
314 PRK11199 tyrA bifunctional cho 57.2 55 0.0012 35.9 9.1 33 383-427 98-131 (374)
315 TIGR03376 glycerol3P_DH glycer 57.0 19 0.00041 39.3 5.5 20 385-404 1-20 (342)
316 PRK11730 fadB multifunctional 56.9 22 0.00048 42.3 6.5 107 457-572 413-527 (715)
317 PRK12829 short chain dehydroge 56.8 31 0.00067 34.1 6.6 37 380-427 8-44 (264)
318 PRK13512 coenzyme A disulfide 56.7 11 0.00023 41.6 3.6 33 385-427 3-35 (438)
319 PRK09564 coenzyme A disulfide 56.6 15 0.00033 40.0 4.8 37 384-430 1-37 (444)
320 cd01968 Nitrogenase_NifE_I Nit 56.2 19 0.00041 39.6 5.5 84 373-472 277-365 (410)
321 PRK12771 putative glutamate sy 56.2 22 0.00048 40.7 6.1 36 380-427 134-169 (564)
322 PRK06249 2-dehydropantoate 2-r 56.0 32 0.00069 36.3 6.9 105 381-502 3-110 (313)
323 TIGR01470 cysG_Nterm siroheme 55.7 17 0.00036 36.7 4.5 36 380-427 6-41 (205)
324 TIGR00465 ilvC ketol-acid redu 55.6 46 0.00099 36.0 8.0 24 381-404 1-24 (314)
325 PRK08163 salicylate hydroxylas 55.5 15 0.00033 39.1 4.4 22 383-404 4-25 (396)
326 PRK09126 hypothetical protein; 55.5 15 0.00032 39.1 4.3 33 383-427 3-35 (392)
327 PRK07417 arogenate dehydrogena 55.1 60 0.0013 33.7 8.6 31 385-427 2-32 (279)
328 PF01266 DAO: FAD dependent ox 55.0 19 0.00042 36.6 4.9 33 385-429 1-33 (358)
329 PRK06138 short chain dehydroge 54.4 35 0.00076 33.4 6.5 77 380-474 2-92 (252)
330 COG0644 FixC Dehydrogenases (f 54.3 17 0.00036 39.5 4.6 35 384-430 4-38 (396)
331 PRK07364 2-octaprenyl-6-methox 54.2 15 0.00032 39.5 4.1 33 383-427 18-50 (415)
332 PRK03369 murD UDP-N-acetylmura 54.2 69 0.0015 36.3 9.5 89 381-494 10-98 (488)
333 PRK04176 ribulose-1,5-biphosph 53.9 16 0.00036 37.8 4.3 34 383-428 25-58 (257)
334 PRK07819 3-hydroxybutyryl-CoA 53.6 18 0.00038 38.1 4.5 32 384-427 6-37 (286)
335 PRK05479 ketol-acid reductoiso 53.5 51 0.0011 36.1 8.0 25 380-404 14-38 (330)
336 TIGR01316 gltA glutamate synth 53.5 19 0.00042 40.0 5.0 36 380-427 130-165 (449)
337 PRK06475 salicylate hydroxylas 53.2 16 0.00034 39.5 4.1 21 384-404 3-23 (400)
338 PRK04663 murD UDP-N-acetylmura 53.1 62 0.0013 35.8 8.8 117 381-537 4-121 (438)
339 PRK05441 murQ N-acetylmuramic 53.1 19 0.00042 38.4 4.7 38 463-502 131-170 (299)
340 COG0499 SAM1 S-adenosylhomocys 52.9 62 0.0013 36.4 8.5 121 356-510 185-306 (420)
341 TIGR01082 murC UDP-N-acetylmur 52.9 29 0.00063 38.4 6.2 105 385-525 1-107 (448)
342 cd05006 SIS_GmhA Phosphoheptos 52.8 68 0.0015 30.9 8.1 22 463-486 101-122 (177)
343 PRK07523 gluconate 5-dehydroge 52.7 49 0.0011 32.8 7.2 36 380-427 7-43 (255)
344 PRK06182 short chain dehydroge 52.6 30 0.00064 34.9 5.8 74 382-474 2-85 (273)
345 PF01408 GFO_IDH_MocA: Oxidore 52.5 24 0.00053 31.0 4.6 90 385-495 2-91 (120)
346 PRK13394 3-hydroxybutyrate deh 52.4 53 0.0012 32.4 7.4 76 380-474 4-95 (262)
347 PRK07233 hypothetical protein; 52.4 16 0.00035 39.0 4.0 31 385-427 1-31 (434)
348 PLN02172 flavin-containing mon 52.0 21 0.00046 40.2 5.1 25 380-404 7-31 (461)
349 PRK05749 3-deoxy-D-manno-octul 52.0 48 0.001 35.9 7.6 37 454-495 312-349 (425)
350 TIGR01790 carotene-cycl lycope 51.9 17 0.00036 38.7 4.1 31 386-428 2-32 (388)
351 PRK05732 2-octaprenyl-6-methox 51.9 21 0.00045 37.8 4.8 37 382-427 2-38 (395)
352 PF02254 TrkA_N: TrkA-N domain 51.6 13 0.00027 32.8 2.6 98 386-501 1-100 (116)
353 TIGR03693 ocin_ThiF_like putat 51.6 75 0.0016 37.8 9.4 64 343-429 101-164 (637)
354 cd05007 SIS_Etherase N-acetylm 51.4 28 0.00062 36.3 5.6 37 463-501 118-156 (257)
355 TIGR01179 galE UDP-glucose-4-e 51.2 72 0.0016 32.3 8.3 97 385-496 1-119 (328)
356 PRK12769 putative oxidoreducta 51.2 19 0.00042 42.0 4.8 35 381-427 325-359 (654)
357 PRK04965 NADH:flavorubredoxin 51.0 18 0.0004 38.7 4.2 36 384-429 3-38 (377)
358 KOG0743 AAA+-type ATPase [Post 51.0 21 0.00046 40.6 4.8 104 251-391 241-345 (457)
359 PLN02695 GDP-D-mannose-3',5'-e 51.0 57 0.0012 35.2 7.9 97 382-498 20-137 (370)
360 TIGR00441 gmhA phosphoheptose 51.0 81 0.0018 30.1 8.2 37 463-501 79-117 (154)
361 PRK06841 short chain dehydroge 50.9 32 0.0007 33.9 5.6 36 380-427 12-48 (255)
362 PRK09987 dTDP-4-dehydrorhamnos 50.9 62 0.0013 33.6 7.9 86 385-498 2-104 (299)
363 PRK07424 bifunctional sterol d 50.8 25 0.00053 39.3 5.2 56 346-427 156-211 (406)
364 PRK12810 gltD glutamate syntha 50.5 22 0.00048 39.7 4.9 34 382-427 142-175 (471)
365 PLN00093 geranylgeranyl diphos 50.3 19 0.00041 40.4 4.3 21 384-404 40-60 (450)
366 PRK06753 hypothetical protein; 50.2 20 0.00043 37.8 4.3 20 385-404 2-21 (373)
367 TIGR01505 tartro_sem_red 2-hyd 50.0 54 0.0012 34.0 7.3 31 385-427 1-31 (291)
368 PLN02268 probable polyamine ox 50.0 8.4 0.00018 41.8 1.5 20 385-404 2-21 (435)
369 TIGR02032 GG-red-SF geranylger 49.9 21 0.00046 35.6 4.2 33 385-429 2-34 (295)
370 cd01979 Pchlide_reductase_N Pc 49.7 46 0.00099 36.6 7.1 83 371-469 264-351 (396)
371 PRK07045 putative monooxygenas 49.7 21 0.00046 38.1 4.4 21 384-404 6-26 (388)
372 COG5322 Predicted dehydrogenas 49.5 23 0.0005 38.4 4.6 45 360-404 144-189 (351)
373 PRK06392 homoserine dehydrogen 49.5 69 0.0015 34.9 8.2 83 385-472 2-90 (326)
374 PRK07251 pyridine nucleotide-d 49.5 22 0.00048 39.0 4.6 34 383-428 3-36 (438)
375 PRK01368 murD UDP-N-acetylmura 49.4 65 0.0014 36.2 8.3 107 382-525 5-112 (454)
376 TIGR02818 adh_III_F_hyde S-(hy 49.3 95 0.0021 33.2 9.2 38 378-426 181-218 (368)
377 PRK07831 short chain dehydroge 49.2 53 0.0011 32.8 6.9 36 380-427 14-51 (262)
378 PRK12266 glpD glycerol-3-phosp 49.2 20 0.00044 40.6 4.4 34 384-429 7-40 (508)
379 PRK08219 short chain dehydroge 49.2 79 0.0017 30.3 7.9 71 384-474 4-82 (227)
380 COG3288 PntA NAD/NADP transhyd 48.9 39 0.00085 37.2 6.2 118 377-509 158-293 (356)
381 PRK12779 putative bifunctional 48.6 24 0.00051 43.6 5.1 39 381-431 304-346 (944)
382 PTZ00318 NADH dehydrogenase-li 48.6 15 0.00032 40.4 3.1 36 380-427 7-42 (424)
383 PRK11154 fadJ multifunctional 48.5 2.1E+02 0.0046 34.3 12.7 106 457-571 410-523 (708)
384 PRK07608 ubiquinone biosynthes 48.4 21 0.00045 37.9 4.1 32 384-427 6-37 (388)
385 cd01493 APPBP1_RUB Ubiquitin a 48.4 20 0.00043 40.4 4.1 37 380-427 17-53 (425)
386 KOG2012 Ubiquitin activating e 48.4 13 0.00027 45.3 2.6 129 347-521 412-552 (1013)
387 PRK09186 flagellin modificatio 48.3 27 0.00058 34.4 4.6 35 381-427 2-37 (256)
388 KOG2018 Predicted dinucleotide 48.2 21 0.00046 39.4 4.0 40 379-429 70-109 (430)
389 PRK00048 dihydrodipicolinate r 48.0 1.1E+02 0.0024 31.8 9.1 88 384-496 2-90 (257)
390 PRK08849 2-octaprenyl-3-methyl 47.9 24 0.00052 37.9 4.5 33 383-427 3-35 (384)
391 PRK00683 murD UDP-N-acetylmura 47.8 91 0.002 34.3 9.0 114 382-537 2-115 (418)
392 PRK07067 sorbitol dehydrogenas 47.7 23 0.0005 35.2 4.0 79 380-474 3-91 (257)
393 PRK06416 dihydrolipoamide dehy 47.5 22 0.00048 39.2 4.3 33 384-428 5-37 (462)
394 TIGR01282 nifD nitrogenase mol 47.3 83 0.0018 35.7 8.8 135 317-472 269-413 (466)
395 COG0654 UbiH 2-polyprenyl-6-me 47.0 25 0.00054 37.9 4.5 33 383-427 2-34 (387)
396 PTZ00431 pyrroline carboxylate 46.9 66 0.0014 33.2 7.4 38 382-427 2-39 (260)
397 PRK10157 putative oxidoreducta 46.9 23 0.00049 39.2 4.2 21 384-404 6-26 (428)
398 COG2072 TrkA Predicted flavopr 46.9 27 0.00058 39.2 4.8 46 517-562 134-187 (443)
399 PLN02427 UDP-apiose/xylose syn 46.8 68 0.0015 34.4 7.7 84 374-474 5-97 (386)
400 PRK11259 solA N-methyltryptoph 46.8 26 0.00056 36.9 4.5 35 383-429 3-37 (376)
401 PTZ00245 ubiquitin activating 46.5 19 0.00042 38.6 3.4 73 379-469 22-98 (287)
402 PF04320 DUF469: Protein with 46.5 17 0.00036 33.7 2.6 32 305-336 27-61 (101)
403 TIGR03736 PRTRC_ThiF PRTRC sys 46.5 30 0.00064 36.3 4.8 43 382-427 10-54 (244)
404 TIGR01984 UbiH 2-polyprenyl-6- 46.4 21 0.00045 37.7 3.7 19 386-404 2-20 (382)
405 cd00529 RuvC_resolvase Hollida 46.4 99 0.0021 29.7 8.0 112 244-396 1-118 (154)
406 PF13450 NAD_binding_8: NAD(P) 46.2 31 0.00067 28.7 4.0 31 388-430 1-31 (68)
407 PLN02463 lycopene beta cyclase 46.2 23 0.00049 39.9 4.1 32 384-427 29-60 (447)
408 PRK08013 oxidoreductase; Provi 46.2 26 0.00056 37.9 4.4 33 383-427 3-35 (400)
409 PLN02676 polyamine oxidase 46.2 55 0.0012 37.1 7.2 23 382-404 25-47 (487)
410 TIGR00031 UDP-GALP_mutase UDP- 46.1 26 0.00057 38.7 4.5 31 385-427 3-33 (377)
411 TIGR01789 lycopene_cycl lycope 46.0 32 0.00069 37.4 5.1 36 386-431 2-37 (370)
412 PRK08773 2-octaprenyl-3-methyl 45.9 24 0.00051 37.8 4.1 34 383-428 6-39 (392)
413 PRK08294 phenol 2-monooxygenas 45.9 23 0.0005 41.5 4.3 47 382-439 31-78 (634)
414 PRK11749 dihydropyrimidine deh 45.8 27 0.00059 38.7 4.7 35 381-427 138-172 (457)
415 TIGR01373 soxB sarcosine oxida 45.8 33 0.00072 36.9 5.2 38 382-429 29-66 (407)
416 PRK09853 putative selenate red 45.6 26 0.00057 43.6 4.8 35 381-427 537-571 (1019)
417 PF01946 Thi4: Thi4 family; PD 45.5 32 0.00069 36.1 4.7 36 383-430 17-52 (230)
418 CHL00076 chlB photochlorophyll 45.5 34 0.00074 39.3 5.5 80 378-471 300-382 (513)
419 PLN02653 GDP-mannose 4,6-dehyd 45.4 1E+02 0.0022 32.3 8.5 82 380-473 3-93 (340)
420 PRK12778 putative bifunctional 45.3 32 0.00069 40.9 5.4 36 380-427 428-463 (752)
421 PRK12491 pyrroline-5-carboxyla 45.3 50 0.0011 34.6 6.2 36 384-427 3-38 (272)
422 PRK10262 thioredoxin reductase 45.0 22 0.00048 37.1 3.6 24 381-404 4-27 (321)
423 PRK08244 hypothetical protein; 45.0 26 0.00057 39.0 4.4 32 384-427 3-34 (493)
424 TIGR00292 thiazole biosynthesi 44.9 28 0.00061 36.1 4.3 37 382-430 20-56 (254)
425 PRK11101 glpA sn-glycerol-3-ph 44.9 27 0.00059 40.0 4.6 33 383-427 6-38 (546)
426 PRK07478 short chain dehydroge 44.9 72 0.0016 31.6 7.0 36 380-427 3-39 (254)
427 TIGR01377 soxA_mon sarcosine o 44.8 28 0.00061 36.7 4.4 33 385-429 2-34 (380)
428 TIGR03088 stp2 sugar transfera 44.8 1.6E+02 0.0035 30.8 9.9 36 455-495 266-301 (374)
429 PRK07890 short chain dehydroge 44.6 70 0.0015 31.5 6.9 36 381-427 3-38 (258)
430 TIGR00274 N-acetylmuramic acid 44.6 39 0.00084 36.1 5.4 38 463-502 126-165 (291)
431 PRK08020 ubiF 2-octaprenyl-3-m 44.4 25 0.00053 37.5 3.9 33 383-427 5-37 (391)
432 PRK07588 hypothetical protein; 44.4 28 0.0006 37.3 4.3 21 384-404 1-21 (391)
433 PRK09466 metL bifunctional asp 44.3 68 0.0015 39.1 7.9 107 382-495 457-570 (810)
434 TIGR01988 Ubi-OHases Ubiquinon 44.2 26 0.00056 36.8 4.0 31 386-428 2-32 (385)
435 PRK06185 hypothetical protein; 44.1 27 0.00059 37.4 4.2 34 383-428 6-39 (407)
436 PF06690 DUF1188: Protein of u 44.0 34 0.00074 36.2 4.7 145 377-576 38-187 (252)
437 TIGR03589 PseB UDP-N-acetylglu 43.9 62 0.0013 34.1 6.8 106 381-498 2-125 (324)
438 PRK12770 putative glutamate sy 43.8 36 0.00078 36.3 5.0 35 381-427 16-50 (352)
439 PRK11559 garR tartronate semia 43.8 49 0.0011 34.3 5.9 32 384-427 3-34 (296)
440 PRK12831 putative oxidoreducta 43.7 31 0.00067 38.7 4.7 35 381-427 138-172 (464)
441 COG0673 MviM Predicted dehydro 43.7 63 0.0014 33.6 6.7 94 383-495 3-102 (342)
442 PRK13369 glycerol-3-phosphate 43.5 26 0.00057 39.4 4.2 33 384-428 7-39 (502)
443 PRK08243 4-hydroxybenzoate 3-m 43.5 31 0.00067 37.1 4.5 33 383-427 2-34 (392)
444 TIGR02053 MerA mercuric reduct 43.4 29 0.00063 38.4 4.4 30 386-427 3-32 (463)
445 PRK13937 phosphoheptose isomer 43.4 71 0.0015 31.5 6.7 37 463-501 106-144 (188)
446 PRK13301 putative L-aspartate 43.4 44 0.00096 35.7 5.5 117 384-524 3-122 (267)
447 PRK05714 2-octaprenyl-3-methyl 43.3 23 0.00051 38.0 3.6 32 384-427 3-34 (405)
448 PRK10892 D-arabinose 5-phospha 43.2 1.2E+02 0.0027 32.0 8.8 83 384-501 48-132 (326)
449 cd04951 GT1_WbdM_like This fam 43.0 2.2E+02 0.0047 28.9 10.3 37 454-495 255-291 (360)
450 COG1252 Ndh NADH dehydrogenase 42.9 24 0.00052 39.6 3.7 36 382-427 2-37 (405)
451 PLN02657 3,8-divinyl protochlo 42.6 1.4E+02 0.003 32.7 9.4 109 376-496 53-180 (390)
452 PRK14852 hypothetical protein; 42.4 24 0.00053 43.7 3.8 38 379-427 328-365 (989)
453 cd01976 Nitrogenase_MoFe_alpha 42.4 62 0.0013 36.1 6.8 87 370-472 287-378 (421)
454 PRK08850 2-octaprenyl-6-methox 42.4 31 0.00068 37.2 4.4 33 383-427 4-36 (405)
455 PRK12814 putative NADPH-depend 42.4 34 0.00073 40.2 4.9 34 382-427 192-225 (652)
456 PRK05976 dihydrolipoamide dehy 42.4 33 0.00072 38.1 4.7 33 383-427 4-36 (472)
457 TIGR01350 lipoamide_DH dihydro 42.3 31 0.00068 37.9 4.4 30 385-426 3-32 (461)
458 PRK01747 mnmC bifunctional tRN 42.3 33 0.00071 40.1 4.8 33 384-428 261-293 (662)
459 PRK07538 hypothetical protein; 42.3 30 0.00065 37.5 4.2 20 385-404 2-21 (413)
460 PRK14806 bifunctional cyclohex 42.3 66 0.0014 38.0 7.3 93 384-498 4-97 (735)
461 PRK06834 hypothetical protein; 42.2 33 0.00072 38.7 4.7 35 382-428 2-36 (488)
462 TIGR03315 Se_ygfK putative sel 42.1 30 0.00065 43.1 4.6 34 382-427 536-569 (1012)
463 PRK00711 D-amino acid dehydrog 42.0 33 0.00071 36.8 4.4 31 385-427 2-32 (416)
464 PRK14694 putative mercuric red 42.0 34 0.00075 38.0 4.7 34 382-427 5-38 (468)
465 PRK06912 acoL dihydrolipoamide 41.8 32 0.0007 38.1 4.5 31 385-427 2-32 (458)
466 PRK06292 dihydrolipoamide dehy 41.7 35 0.00076 37.5 4.7 33 383-427 3-35 (460)
467 PRK06124 gluconate 5-dehydroge 41.6 81 0.0018 31.2 6.8 39 378-427 6-44 (256)
468 PRK06398 aldose dehydrogenase; 41.6 1.7E+02 0.0036 29.5 9.1 74 380-473 3-82 (258)
469 cd08301 alcohol_DH_plants Plan 41.6 1.5E+02 0.0033 31.4 9.3 36 381-427 186-221 (369)
470 TIGR01317 GOGAT_sm_gam glutama 41.1 36 0.00078 38.4 4.7 34 382-427 142-175 (485)
471 PF00743 FMO-like: Flavin-bind 41.0 32 0.0007 39.6 4.4 32 384-427 2-33 (531)
472 PRK06200 2,3-dihydroxy-2,3-dih 41.0 35 0.00077 34.0 4.2 37 380-427 3-39 (263)
473 PF13407 Peripla_BP_4: Peripla 41.0 75 0.0016 31.2 6.5 148 205-379 52-206 (257)
474 PF13580 SIS_2: SIS domain; PD 40.8 35 0.00075 32.0 3.9 30 455-486 95-124 (138)
475 PRK07494 2-octaprenyl-6-methox 40.7 33 0.00071 36.5 4.1 35 383-429 7-41 (388)
476 TIGR03143 AhpF_homolog putativ 40.6 31 0.00068 39.5 4.2 32 385-428 6-37 (555)
477 PRK13403 ketol-acid reductoiso 40.5 65 0.0014 35.6 6.3 37 379-427 12-48 (335)
478 PRK03515 ornithine carbamoyltr 40.5 1.9E+02 0.0041 31.8 9.9 131 323-472 98-234 (336)
479 PRK07333 2-octaprenyl-6-methox 40.5 28 0.00061 37.1 3.6 20 385-404 3-22 (403)
480 PRK08265 short chain dehydroge 40.5 40 0.00086 33.9 4.5 37 380-427 3-39 (261)
481 PRK07774 short chain dehydroge 40.4 49 0.0011 32.4 5.1 36 380-427 3-39 (250)
482 PLN02350 phosphogluconate dehy 40.3 83 0.0018 36.3 7.5 97 385-501 8-110 (493)
483 PRK05653 fabG 3-ketoacyl-(acyl 40.3 1E+02 0.0022 29.8 7.1 35 381-427 3-38 (246)
484 TIGR03325 BphB_TodD cis-2,3-di 40.3 37 0.0008 34.0 4.2 36 380-427 2-38 (262)
485 PRK11728 hydroxyglutarate oxid 40.2 38 0.00081 36.5 4.5 34 384-427 3-36 (393)
486 PRK11445 putative oxidoreducta 40.2 34 0.00074 36.4 4.2 20 385-404 3-22 (351)
487 PRK08220 2,3-dihydroxybenzoate 40.0 1.8E+02 0.0039 28.6 8.9 77 380-474 5-87 (252)
488 PF12227 DUF3603: Protein of u 39.9 14 0.00031 38.0 1.2 26 236-264 51-76 (214)
489 PRK08010 pyridine nucleotide-d 39.9 36 0.00078 37.4 4.4 32 384-427 4-35 (441)
490 PRK05868 hypothetical protein; 39.8 36 0.00077 36.7 4.3 21 384-404 2-22 (372)
491 PRK10669 putative cation:proto 39.8 38 0.00082 38.8 4.7 32 384-427 418-449 (558)
492 cd01974 Nitrogenase_MoFe_beta 39.8 30 0.00065 38.5 3.8 104 373-501 293-405 (435)
493 PLN02172 flavin-containing mon 39.7 38 0.00082 38.2 4.6 36 381-428 202-237 (461)
494 cd05188 MDR Medium chain reduc 39.6 82 0.0018 30.6 6.4 46 370-427 122-167 (271)
495 COG1893 ApbA Ketopantoate redu 39.5 70 0.0015 34.3 6.4 22 384-405 1-22 (307)
496 PRK06171 sorbitol-6-phosphate 39.5 1.6E+02 0.0035 29.3 8.7 76 380-473 6-87 (266)
497 PLN02568 polyamine oxidase 39.4 19 0.00041 41.5 2.3 24 382-405 4-27 (539)
498 PF12831 FAD_oxidored: FAD dep 39.4 37 0.0008 37.6 4.4 33 386-430 2-34 (428)
499 cd01981 Pchlide_reductase_B Pc 39.3 1.1E+02 0.0024 33.9 8.1 75 379-471 297-378 (430)
500 PRK09897 hypothetical protein; 39.3 40 0.00086 39.1 4.8 33 385-427 3-35 (534)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.3e-223 Score=1772.46 Aligned_cols=560 Identities=63% Similarity=1.043 Sum_probs=547.0
Q ss_pred ccCCCcccCCCCCccc-ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhcCCCchhH
Q 006498 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (643)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (643)
.++++..+..+...+| ..+.++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3444444434444555 667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEe
Q 006498 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (643)
Q Consensus 161 y~~L~~L~~~Ne~LFY~ll~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVT 240 (643)
|+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|||||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecCCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHH
Q 006498 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (643)
Q Consensus 241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~a 320 (643)
||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||+|+|+||+|++|+|||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceeeecCCCCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 006498 321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (643)
Q Consensus 321 v~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ 400 (643)
|+++|||++|||||||+++|||++|+|||.+||||||||||||+|+|||||+|+|++|++|+||+|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHH
Q 006498 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKE 480 (643)
Q Consensus 401 li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ftee 480 (643)
||+.+|+++ |+|+|||++||||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+||||
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee 406 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE 406 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence 999999996 9999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCC
Q 006498 481 VVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 560 (643)
Q Consensus 481 vv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a 560 (643)
|||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++
T Consensus 407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCC
Q 006498 561 IRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYR 640 (643)
Q Consensus 561 ~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~ 640 (643)
++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++||++|+|+..|+|+|+.+|++++||+|+|+
T Consensus 487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~ 566 (582)
T KOG1257|consen 487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR 566 (582)
T ss_pred ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 006498 641 TY 642 (643)
Q Consensus 641 ~~ 642 (643)
++
T Consensus 567 ~~ 568 (582)
T KOG1257|consen 567 NS 568 (582)
T ss_pred cc
Confidence 75
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-211 Score=1710.98 Aligned_cols=540 Identities=50% Similarity=0.857 Sum_probs=530.6
Q ss_pred ccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhHHHHHHHh
Q 006498 100 SVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLL 179 (643)
Q Consensus 100 ~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ll 179 (643)
+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccccc
Q 006498 180 IDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIP 259 (643)
Q Consensus 180 ~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 259 (643)
++|+||+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCC
Q 006498 260 VGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANH 339 (643)
Q Consensus 260 iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~ 339 (643)
+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++||+|+||||++|+.+| |+++||||||+++
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~ 251 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK 251 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006498 340 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (643)
Q Consensus 340 nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~ 419 (643)
|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++
T Consensus 252 ~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~ 330 (563)
T PRK13529 252 NARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARK 330 (563)
T ss_pred hHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEeCCCcccCCCccCCchhchhhccccCCC---------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCC
Q 006498 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNE 490 (643)
Q Consensus 420 ~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e 490 (643)
+||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++||
T Consensus 331 ~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~e 409 (563)
T PRK13529 331 RFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE 409 (563)
T ss_pred eEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 99999999999999975 999999999976543 68999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHH
Q 006498 491 KPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLA 570 (643)
Q Consensus 491 rPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~la 570 (643)
|||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||++
T Consensus 410 rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~a 489 (563)
T PRK13529 410 RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMA 489 (563)
T ss_pred CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 006498 571 AAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643 (643)
Q Consensus 571 AA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 643 (643)
||++||+++++++++++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|.|+||+
T Consensus 490 AA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 490 AAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999999984 67889999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1e-210 Score=1712.22 Aligned_cols=543 Identities=74% Similarity=1.190 Sum_probs=535.8
Q ss_pred cccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhHHHHHHHhh
Q 006498 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (643)
Q Consensus 101 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ll~ 180 (643)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccccch
Q 006498 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (643)
Q Consensus 181 ~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 260 (643)
+|++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCc
Q 006498 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN 340 (643)
Q Consensus 261 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~n 340 (643)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 341 AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 341 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
||+||++|||+++|.++|+++|++||++.++..+|+|||+.+|||||||+|+++|+||||+||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 006498 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (643)
Q Consensus 501 ts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (643)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 006498 581 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 643 (643)
Q Consensus 581 ~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 643 (643)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|++|+
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777899999999999999999985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=9.5e-209 Score=1690.86 Aligned_cols=539 Identities=49% Similarity=0.846 Sum_probs=526.5
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhHHHHHH
Q 006498 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (643)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ 177 (643)
..+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccc
Q 006498 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (643)
Q Consensus 178 ll~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 257 (643)
+|++|+|||||||||||||+||++||++||+|||||+|++|||+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCC
Q 006498 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 337 (643)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~ 337 (643)
||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|+||++|+||||+||+++| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 006498 338 NHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (643)
Q Consensus 338 ~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeA 417 (643)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCeEEEEeCCCcccCCCccCCchhchhhcccc--CC---CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCc
Q 006498 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 492 (643)
Q Consensus 418 r~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erP 492 (643)
++|||+||++|||+++|.++|+++|++|||+. .+ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 56999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 006498 493 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 572 (643)
Q Consensus 493 IIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 572 (643)
|||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 006498 573 EALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR--LPP-PKDLVKYAESCMYSPA 638 (643)
Q Consensus 573 ~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~--~~~-p~dl~~~i~~~m~~P~ 638 (643)
++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=6.5e-119 Score=952.21 Aligned_cols=425 Identities=37% Similarity=0.560 Sum_probs=383.1
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 006498 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (643)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFY~ll~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis 215 (643)
++|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999887 99999999 899999999999999999999999999999999998888875
Q ss_pred cCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CcccccchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCC
Q 006498 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294 (643)
Q Consensus 216 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~D 294 (643)
.++.+++.|||||||||||||||+| ..||+||+||++|||+||||| +|||+||+|||||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3455666999999999999999999 679999999999999999999 9999999999988
Q ss_pred cccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHHH--HHHHcCCCceeccCCcchHHHHHHHHHH
Q 006498 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL--LEKYGTTHLVFNDDIQGTASVVLAGLIS 372 (643)
Q Consensus 295 plYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~l--L~ryr~~~~~FNDDiQGTaaV~LAgll~ 372 (643)
+++||++++++||. |++||+..+.||.+ +.|||.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999966 66666666666655 5566789999999999999999999999
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCcc-CCchhchhhcc-ccC
Q 006498 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHE 450 (643)
Q Consensus 373 Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~-~L~~~k~~fA~-~~~ 450 (643)
|+|++|++|+|+||||+|||+||+|||+||+.+|++ ++|||+||++|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987543 3899999999999999976 36778878885 444
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCc
Q 006498 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPF 530 (643)
Q Consensus 451 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV 530 (643)
...+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+|||||
T Consensus 260 ~~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs---- 326 (432)
T COG0281 260 ERTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS---- 326 (432)
T ss_pred cccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC----
Confidence 4443 4444 569999999999 899999999998 559999999999 99999999999999999999975
Q ss_pred ccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHH
Q 006498 531 EYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAK 610 (643)
Q Consensus 531 ~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~ 610 (643)
++|||+||+|+|||||+|+|+++|++|||+|++|||+|||+++.++.. .+.|+|++++.|.+|. ||.||+++
T Consensus 327 ------d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~a 398 (432)
T COG0281 327 ------DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKA 398 (432)
T ss_pred ------CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHH
Confidence 566699999999999999999999999999999999999999987665 7899999999999999 99999999
Q ss_pred HHHcCCCCCCCCc-hhHHHHHHhCCcccCCCCCC
Q 006498 611 AYELGLATRLPPP-KDLVKYAESCMYSPAYRTYR 643 (643)
Q Consensus 611 A~~~GlA~~~~~p-~dl~~~i~~~m~~P~Y~~~~ 643 (643)
|.++|+|+..+.. +++.++++..+|.|.|.+++
T Consensus 399 A~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 399 AMEEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HHHcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 9999999965554 46999999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-110 Score=948.67 Aligned_cols=370 Identities=31% Similarity=0.530 Sum_probs=336.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcc-cccchhh
Q 006498 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (643)
Q Consensus 184 ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (643)
.+.|.++|||||+++|++ |+++|+++| + |+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~-------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF-R-------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh-h-------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 345999999999999999 899999996 4 444555799999999999999999997 9999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHH
Q 006498 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF 342 (643)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf 342 (643)
++|||+||||| +||+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56666666 578 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 343 DLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 343 ~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999975 498754 9
Q ss_pred EEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 006498 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (643)
Q Consensus 501 ts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (643)
| ||||||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 7999999999999999999999999999999999999999999999
Q ss_pred ccCCC------------CCc--ccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 006498 581 QENFD------------KGL--LYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 632 (643)
Q Consensus 581 ~~~~~------------~g~--l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 632 (643)
++++. .|. |+|+..+ ++||..||.||+++|+++|+|+. +. +++.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 87533 454 4495555 68999999999999999999985 32 566666554
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=6.6e-110 Score=946.52 Aligned_cols=369 Identities=29% Similarity=0.491 Sum_probs=338.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcc-cccchhh
Q 006498 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (643)
Q Consensus 184 ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (643)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 345999999999999999 889998888 4667778999999999999999999996 9999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCC-cceeeecCCCCcH
Q 006498 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQFEDFANHNA 341 (643)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~-~lIqfEDf~~~nA 341 (643)
++|||+||||| ++ |+||||+ || ||||++|+..| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~----~i~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VF----DIELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cc----ccccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 55 5555565 66 89999999999 88 7899999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006498 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (643)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~ 419 (643)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 89999999999999999999999999999999999999999999999999986 48874 8
Q ss_pred eEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 420 ~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
|||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 9999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 006498 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 579 (643)
Q Consensus 500 Pts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 579 (643)
|| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred CccC--------------CCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 006498 580 TQEN--------------FDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 632 (643)
Q Consensus 580 ~~~~--------------~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 632 (643)
++++ +..+.|||+..+ ++|+..||.||+++|+++|+|+. + .+++.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 445569995555 78999999999999999999985 3 3466677654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=8.6e-109 Score=933.63 Aligned_cols=358 Identities=31% Similarity=0.515 Sum_probs=334.0
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCc-ccccchhh
Q 006498 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (643)
Q Consensus 184 ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 262 (643)
.+.|+++||||||++|++ |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 346999999999999996 899999999 666665 469999999999999999999 89999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCc-ceeeecCCCCcH
Q 006498 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQFEDFANHNA 341 (643)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~-lIqfEDf~~~nA 341 (643)
++|||+||||| + +|+||||+ | +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~----~~i~~~~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---V----FDIEVDEE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---c----cccccCCC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 5 55555666 3 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006498 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (643)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~ 419 (643)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 4887 78
Q ss_pred eEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 420 ~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 455799999998 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 006498 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 579 (643)
Q Consensus 500 Pts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 579 (643)
|| |||||||||+||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred Ccc--------------CCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 006498 580 TQE--------------NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR 619 (643)
Q Consensus 580 ~~~--------------~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~GlA~~ 619 (643)
+++ ++....|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 986 6888999998888 57999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=5.1e-99 Score=772.67 Aligned_cols=277 Identities=61% Similarity=1.007 Sum_probs=270.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999987 599999999999999999999999975 9
Q ss_pred chhchhhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006498 439 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 516 (643)
Q Consensus 439 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~ 516 (643)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCc
Q 006498 517 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 596 (643)
Q Consensus 517 GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~i 596 (643)
|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 006498 597 RKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSP 637 (643)
Q Consensus 597 r~Vs~~VA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P 637 (643)
|+||..||.+|+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=6.7e-96 Score=741.69 Aligned_cols=252 Identities=56% Similarity=0.928 Sum_probs=229.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhchhhccccCCCC---CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006498 439 QHFKKPWAHEHEPVK---ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (643)
Q Consensus 439 ~~~k~~fA~~~~~~~---~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 515 (643)
+++|++|||+..+.. +|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 999999999877654 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006498 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (643)
Q Consensus 516 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 595 (643)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 006498 596 IRKISAHIAAEVAAKAY 612 (643)
Q Consensus 596 ir~Vs~~VA~aVa~~A~ 612 (643)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=5.5e-93 Score=719.81 Aligned_cols=251 Identities=50% Similarity=0.780 Sum_probs=245.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||++||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999965 9
Q ss_pred chhchh---hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006498 439 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (643)
Q Consensus 439 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 515 (643)
.++|++ |+++..+..+|+|+|+.+|||||||+|+++|+||||+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006498 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (643)
Q Consensus 516 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 595 (643)
+|||||||||||+||+|||++|+|+||||+|||||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 006498 596 IRKISAHIAAEVAAKA 611 (643)
Q Consensus 596 ir~Vs~~VA~aVa~~A 611 (643)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=6.7e-84 Score=625.26 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.3
Q ss_pred HHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 006498 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (643)
Q Consensus 168 ~~~Ne~LFY~ll~~~~ee~lPivYTPtVG~aCq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (643)
|++||+|||++|.+|+||+||||||||||+|||+||++|++|+|||+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCC
Q 006498 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (643)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp 327 (643)
|||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCCCCcHHHHHHHHc
Q 006498 328 RILIQFEDFANHNAFDLLEKYG 349 (643)
Q Consensus 328 ~~lIqfEDf~~~nAf~lL~ryr 349 (643)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=2.7e-58 Score=459.13 Aligned_cols=223 Identities=35% Similarity=0.509 Sum_probs=207.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
+||||+|++||+++|++..|.+++|+|+||+|||+||.|||++|.. .|++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3876 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006498 439 QHFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (643)
Q Consensus 439 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 515 (643)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 222 379899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006498 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (643)
Q Consensus 516 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ 595 (643)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 006498 596 IRKISAHIAAEVAAKA 611 (643)
Q Consensus 596 ir~Vs~~VA~aVa~~A 611 (643)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.84 E-value=3.8e-08 Score=84.58 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
+||.++++++..+.+..+.+++..+++++|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998753 3 257999988
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (643)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.67 E-value=0.003 Score=70.02 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=105.2
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHHH---------------------HHHHc-------CCCcee
Q 006498 304 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL---------------------LEKYG-------TTHLVF 355 (643)
Q Consensus 304 R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~l---------------------L~ryr-------~~~~~F 355 (643)
..+-+||...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888777765 344566555 4444433332 13443 369999
Q ss_pred c----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEe
Q 006498 356 N----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (643)
Q Consensus 356 N----------DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD 425 (643)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEc
Confidence 8 7778998777666653 44677899999999999999999988864 253 688888
Q ss_pred CCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 426 SKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 426 ~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.+ ..|. +...+ ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+-+.
T Consensus 243 ~d----p~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VD----PICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CC----chhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 64 2221 11111 11123468888875 89999988877788888888885 334555555443
No 16
>PLN02477 glutamate dehydrogenase
Probab=97.23 E-value=0.014 Score=64.60 Aligned_cols=185 Identities=22% Similarity=0.237 Sum_probs=127.0
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHH---HHHHHcC----CCcee----------ccCCcchHHHHH
Q 006498 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVF----------NDDIQGTASVVL 367 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~----~~~~F----------NDDiQGTaaV~L 367 (643)
.+..|-..|...|+.++.+.-||..=|-=+|.+.. ..+ +.++|+. .-.|+ .+--.-||-=+.
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~ 190 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV 190 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence 45678889999999999999998655556677653 322 5567753 11111 223345887788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEeCCCcccCCCccCCchhch-hh
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK-PW 445 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~-lvD~~GLv~~~R~~~L~~~k~-~f 445 (643)
.++-.+++..|.+|++.||+|.|.|..|.+.|++|.+ .|. +|+ +.|++|-|+... .|+..+. .+
T Consensus 191 ~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~ 256 (410)
T PLN02477 191 FATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNEN--GLDIPALRKH 256 (410)
T ss_pred HHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCC--CCCHHHHHHH
Confidence 8888899999999999999999999999999998865 353 566 899999999875 3442211 11
Q ss_pred cccc------C--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 006498 446 AHEH------E--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (643)
Q Consensus 446 A~~~------~--~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~~ 513 (643)
.+.. + ..-+-.|.+. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 257 k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 257 VAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 1110 0 0012223333 4899999655 5779999999986 6889999999 65 344 445554
No 17
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.23 E-value=0.0015 Score=71.59 Aligned_cols=121 Identities=25% Similarity=0.383 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
.+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4888999999999999999888854 254 5799888741 22 11
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKP-IIFSLSNPT 501 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erP-IIFaLSNPt 501 (643)
...+.+....-+..++.+++.. .|++|-+++.+ ..++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111122467788875 89999987655 468999999875433356 888999997
No 18
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.19 E-value=0.016 Score=64.71 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=130.1
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHH---HHHHHcCC---C-------cee----ccCCcchHHHHH
Q 006498 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTT---H-------LVF----NDDIQGTASVVL 367 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~~---~-------~~F----NDDiQGTaaV~L 367 (643)
.+..|-..|...|+.++.+.+||..=|-=+|++. +... +.+.|+.- . ++- .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 4556888999999999999999988787888874 3332 66777631 1 111 123446777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-eCCCcccCCCccCCchh-----
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF----- 441 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lv-D~~GLv~~~R~~~L~~~----- 441 (643)
.++..+++..|.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+..
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~ 282 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEI 282 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHH
Confidence 8888889999999999999999999999999999953 353 55555 9999999775 34332
Q ss_pred ch-------hhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 006498 442 KK-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (643)
Q Consensus 442 k~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~ 512 (643)
|. .|... ....-+- +.+-.++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| +++++
T Consensus 283 k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 283 KEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHH
Confidence 21 11110 0000112 2234568999996665 77999999999853 45789999998 76 233 44555
Q ss_pred c
Q 006498 513 T 513 (643)
Q Consensus 513 ~ 513 (643)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 19
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.04 E-value=0.0038 Score=65.82 Aligned_cols=136 Identities=23% Similarity=0.354 Sum_probs=86.6
Q ss_pred CcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 006498 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (643)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr 418 (643)
.+|+++=++.|.+.-+. .|-.+|+.+++-.|....|. +.+.||+|+|+|..|..++..+.. .| .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KG------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cC------C
Confidence 46777777777654444 34456666666555555554 889999999999999998888864 24 2
Q ss_pred CeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 006498 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFS 496 (643)
Q Consensus 419 ~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFa 496 (643)
++|+++|+. ..| .....+.|-....+..++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999874 222 112222221111122357787775 8999999887754 67666654322 2347778
Q ss_pred cCCCC
Q 006498 497 LSNPT 501 (643)
Q Consensus 497 LSNPt 501 (643)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 20
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.02 E-value=0.0084 Score=66.34 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=93.5
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 677899998887776 566788999999999999999999987753 363 5
Q ss_pred EEEEeCCCcccCCCccCCchhchhhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 421 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
++++|.+ ..| ...|+. .-...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7778764 222 222322 1112246788865 79999999888888988888885 5557766776
Q ss_pred CCCCCCCCHHHHhc
Q 006498 500 PTSQSECTAEEAYT 513 (643)
Q Consensus 500 Pts~aEct~edA~~ 513 (643)
+. .|+...+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
No 21
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.91 E-value=0.013 Score=64.89 Aligned_cols=128 Identities=19% Similarity=0.243 Sum_probs=87.8
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788887 777899977776655 566778999999999999999999987753 253 5
Q ss_pred EEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
++++|.+- .|. +.... ......++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-.
T Consensus 221 ViV~d~dp----~r~--~~A~~-----~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~ 284 (406)
T TIGR00936 221 VIVTEVDP----IRA--LEAAM-----DGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHF 284 (406)
T ss_pred EEEEeCCh----hhH--HHHHh-----cCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCC
Confidence 88888642 121 11111 11112357788875 89999888877778888888775 45577666665
Q ss_pred CCCCCCCHHHH
Q 006498 501 TSQSECTAEEA 511 (643)
Q Consensus 501 ts~aEct~edA 511 (643)
. .|+.-++.
T Consensus 285 ~--~eId~~aL 293 (406)
T TIGR00936 285 D--VEIDVKAL 293 (406)
T ss_pred C--ceeCHHHH
Confidence 4 55555444
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.90 E-value=0.004 Score=68.34 Aligned_cols=120 Identities=26% Similarity=0.423 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
+..+|+.+++--|.+..| ++.+.+++|+|||..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666544444444 6888999999999999999888753 353 679988875 222 111
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcC--CCCcEEEecCCCC
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASL--NEKPIIFSLSNPT 501 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~--~erPIIFaLSNPt 501 (643)
..+.|.....+..++.+++.. .|++|-+++.+. .++++.++.+.+. ....+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 222221111122456677764 899999887654 7899999987532 2345888999997
No 23
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.83 E-value=0.013 Score=59.43 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. . |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44456667778889999999999999999999999999999753 53 578899999988876 3 3332
Q ss_pred -chhhccccCCCCC------H-HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 006498 442 -KKPWAHEHEPVKE------L-VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (643)
Q Consensus 442 -k~~fA~~~~~~~~------L-~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~ 512 (643)
...++++...... + .+.+-.++.||||=++. ++..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1222221110000 0 13344568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 006498 513 T 513 (643)
Q Consensus 513 ~ 513 (643)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 24
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.82 E-value=0.041 Score=61.60 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=123.0
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHH--HHHHHHcCC----Ccee----------ccCCcchHHHHHH
Q 006498 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF--DLLEKYGTT----HLVF----------NDDIQGTASVVLA 368 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf--~lL~ryr~~----~~~F----------NDDiQGTaaV~LA 368 (643)
.+-.|...|.-.||..+...+||+.-|-=+|++..-.- -+.+.|+.. .-+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45678899999999999999999988888888753222 266777531 1233 2334568877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc
Q 006498 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (643)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~ 448 (643)
++-.+++..|.+|+++|++|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8888999999999999999999999999999999753 63 3345689999888654 355543322111
Q ss_pred c--CCCCCHHH-------------HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006498 449 H--EPVKELVD-------------AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (643)
Q Consensus 449 ~--~~~~~L~e-------------~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 501 (643)
. ....++.+ .+-.++.|+||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 0 00011111 111246788885555 5689999998885311 127777777 54
No 25
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.80 E-value=0.01 Score=64.24 Aligned_cols=113 Identities=20% Similarity=0.343 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
|+++...++--|.+..|..|++.++++.|| |+.|--+|++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999988642 232 578888864 222 333
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT--FTKEVVEAMASLNEKP-IIFSLSNPTS 502 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Fteevv~~Ma~~~erP-IIFaLSNPts 502 (643)
.+..+.. ....+|.+++.. +|++|=+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333421 223467788875 9999988776433 677655 344 5556888864
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.69 E-value=0.014 Score=57.09 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA 446 (643)
.+.+-.++-...+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33344555556789999999999998 59889888864 242 58988864
Q ss_pred cccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 447 HEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 447 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
..+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999998899999764 346777888876
No 27
>PLN02494 adenosylhomocysteinase
Probab=96.65 E-value=0.023 Score=63.98 Aligned_cols=131 Identities=18% Similarity=0.292 Sum_probs=94.3
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 556899888888877 567888999999999999999999999853 263 5
Q ss_pred EEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 888876421 10 11111111 11258888875 89999877777788899999886 66788888876
Q ss_pred CCCCCCCHHHHhcc
Q 006498 501 TSQSECTAEEAYTW 514 (643)
Q Consensus 501 ts~aEct~edA~~w 514 (643)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 5 77777766654
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.58 E-value=0.018 Score=60.53 Aligned_cols=139 Identities=18% Similarity=0.275 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
+..+.+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+.. .|. +++++|++. .+ +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~~---~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----AD---L 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----HH---H
Confidence 3455566666777788888899999999999999999999999864 253 688888751 11 1
Q ss_pred chhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc
Q 006498 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR 518 (643)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Gr 518 (643)
...+ .+....-...+|.+.++. .|++|=+.. .+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -+-+
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~P-~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~ 257 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTIP-ALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIK 257 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECCC-hHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCE
Confidence 1111 000011122457777775 899997543 4578999988885 566888776532 4556655444 3447
Q ss_pred EEEeeCCC
Q 006498 519 AIFASGSP 526 (643)
Q Consensus 519 aifASGSP 526 (643)
++.+-|=|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 88888865
No 29
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.56 E-value=0.0037 Score=58.24 Aligned_cols=102 Identities=24% Similarity=0.425 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc---cCCCCCH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 455 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~---~~~~~~L 455 (643)
.++++.|++++|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999999988888653 64 789999974 333 33333334110 1223566
Q ss_pred HHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 006498 456 VDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPts 502 (643)
.+.++. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677775 999999988773 7788887653211 249999999964
No 30
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.47 E-value=0.21 Score=56.21 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=125.8
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHH---HHHHHcC---CC-ceecc----------CCcchHHHHH
Q 006498 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT---TH-LVFND----------DIQGTASVVL 367 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~---~~-~~FND----------DiQGTaaV~L 367 (643)
.+..|-..|...||..+.+..||..=|-=.|++. ++.+ +.+.|+. .+ .|+-. --..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4566778999999999999999999999999984 4433 4556642 11 22211 1224777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEeCCCcccCCCccCCchhch---
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK--- 443 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~-lvD~~GLv~~~R~~~L~~~k~--- 443 (643)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+ .|. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LGA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 8888999999999999999999999999999999865 363 455 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 006498 444 ------------PWAHEHEPVK--ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 502 (643)
Q Consensus 444 ------------~fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 502 (643)
.|+......+ +- +.+-.++.||||=+.. .+..|++-++.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 2211000000 10 1122367899997766 56999999998843 34568888888 663
No 31
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.43 E-value=0.13 Score=57.80 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=129.0
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHH---HHHHHcC----CCceec----------cCCcchHHHHH
Q 006498 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVFN----------DDIQGTASVVL 367 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~----~~~~FN----------DDiQGTaaV~L 367 (643)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.+ +++.|+. ...++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556888999999999998889988777788873 4433 5677753 222321 11123888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh---
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--- 444 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~--- 444 (643)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999998653 64 4567789999998764 35443311
Q ss_pred ------------hccccCCCC--CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHH
Q 006498 445 ------------WAHEHEPVK--ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 509 (643)
Q Consensus 445 ------------fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~e 509 (643)
++...+..+ +-.+ +-.++.||||=+.. ++..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 110100000 1112 22467899996665 57999999999853 35678888888 543 33 44
Q ss_pred HHhc
Q 006498 510 EAYT 513 (643)
Q Consensus 510 dA~~ 513 (643)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 32
>PLN00203 glutamyl-tRNA reductase
Probab=96.14 E-value=0.02 Score=65.08 Aligned_cols=201 Identities=19% Similarity=0.275 Sum_probs=115.3
Q ss_pred chHHHHHHHHHHHHHHhCC-CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~-~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..++..+.. .|. ++|+++++. ..| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3445555566556666664 6999999999999999998887753 353 679998875 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCCCCCCHHHH
Q 006498 440 HFKKPWAH---EHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN---EKP-IIFSLSNPTSQSECTAEEA 511 (643)
Q Consensus 440 ~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---erP-IIFaLSNPts~aEct~edA 511 (643)
.....|-. ...+..++.++++. .|++|.+++.+ .+|++++++.|-... .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 11233567788875 89999886554 489999999984321 244 5667999963111111
Q ss_pred hcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHH-HcccC--ccCCCCCc
Q 006498 512 YTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEAL-AGQVT--QENFDKGL 588 (643)
Q Consensus 512 ~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aL-A~~v~--~~~~~~g~ 588 (643)
...|+++|===-|-.+......-..+-... |+.+ ...+. .+.+..-.
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~-Ae~II~ee~~~F~~w~~~~~ 429 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME-AQTIIREESKNFEAWRDSLE 429 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 111222221112223333222222221222 2222 11111 11234556
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHc
Q 006498 589 LYPPFKNIRKISAHIAAEVAAKAYEL 614 (643)
Q Consensus 589 l~P~~~~ir~Vs~~VA~aVa~~A~~~ 614 (643)
+-|-+.++|+-...|..+=.+.+++.
T Consensus 430 ~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 430 TVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999988888888764
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.10 E-value=0.046 Score=57.62 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh
Q 006498 365 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 444 (643)
Q Consensus 365 V~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~ 444 (643)
++-+++..|++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++ ..+ +...+..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~----~~~---~~~~~~~ 194 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARK----SAH---LARITEM 194 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECC----HHH---HHHHHHc
Confidence 3334566677888889999999999999999999888864 25 278989886 111 1111100
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cEEEee
Q 006498 445 WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RAIFAS 523 (643)
Q Consensus 445 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G-raifAS 523 (643)
-++ .....+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| +++.++
T Consensus 195 G~~-~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~~~~ 263 (296)
T PRK08306 195 GLS-PFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKALLAP 263 (296)
T ss_pred CCe-eecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEEEEC
Confidence 001 0112467788875 999998754 4578999998886 566777665433 2344443332 34 455556
Q ss_pred CCC
Q 006498 524 GSP 526 (643)
Q Consensus 524 GSP 526 (643)
|=|
T Consensus 264 ~lp 266 (296)
T PRK08306 264 GLP 266 (296)
T ss_pred CCC
Confidence 644
No 34
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.10 E-value=0.04 Score=54.92 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHh--CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC
Q 006498 361 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~--g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L 438 (643)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | -+++++|++ . +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~----~---~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADIN----E---EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----H---HHH
Confidence 35555666677777775 8899999999999999999999988652 5 368888865 1 123
Q ss_pred chhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 006498 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (643)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~~ 513 (643)
..++..|.. ... +..+... .+.|+++=++. ++..|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 334333311 111 2233333 36999995554 679999999999 4678888888 6632 33445554
No 35
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.04 E-value=0.034 Score=61.72 Aligned_cols=214 Identities=21% Similarity=0.309 Sum_probs=128.0
Q ss_pred CcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 006498 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (643)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr 418 (643)
..||..=.|+|.+-- + -.|-.+|.-|++=-|-++.|. |++.+++|+|||..|..+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 456666677774310 1 123334555555555565554 9999999999999999998888753 64
Q ss_pred CeEEEEeCCCcccCCCccCCchhchhhcccc----CCCCCHHHHHhccCCcEEEEccC-CCCCCCHHHHHHHHcCCCCcE
Q 006498 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPI 493 (643)
Q Consensus 419 ~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPI 493 (643)
++|+++.+. ..|. +.+|++. -....|.+.+.. .||+|-.++ ..-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 788887763 3332 2233321 223456667765 888886544 445889998887654444459
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHH
Q 006498 494 IFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (643)
Q Consensus 494 IFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 573 (643)
||=|+||-.- ++ ..+.-+|+++|===-|-.+.-.-..-..+... +|+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~-~ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAA-KAE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHH-HHH
Confidence 9999999831 11 12344566666544444443332222222222 222
Q ss_pred HH-----HcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCC
Q 006498 574 AL-----AGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGL 616 (643)
Q Consensus 574 aL-----A~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~~Gl 616 (643)
++ +.+. +.+..-.+-|.+.++|+-+..|...-.+.|.+.--
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~ 362 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKLP 362 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 2211 12445568888898998888888888888875543
No 36
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.92 E-value=0.14 Score=53.45 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~-lvD~~GLv~~~R~~~L~ 439 (643)
.||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 46666677778888888999999999999999999999999865 253 455 899999998875 343
Q ss_pred hhch---------------hhcccc--CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006498 440 HFKK---------------PWAHEH--EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (643)
Q Consensus 440 ~~k~---------------~fA~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 501 (643)
..+. .|.... ...-+-.|.. .++.||||=+. .++..|++.+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 111000 0001122222 45789999665 467999999999843 35789999998 77
Q ss_pred CCCCCCHHHHhc
Q 006498 502 SQSECTAEEAYT 513 (643)
Q Consensus 502 s~aEct~edA~~ 513 (643)
+. .+++.+.
T Consensus 159 t~---~a~~~L~ 167 (254)
T cd05313 159 TA---EAIEVFR 167 (254)
T ss_pred CH---HHHHHHH
Confidence 32 2445444
No 37
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.046 Score=57.70 Aligned_cols=97 Identities=19% Similarity=0.353 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+.+-.|-.|++..++..+.+++.+++|++|+|- +|..||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346677799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT 501 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt 501 (643)
..+|.+.++. .|++|-+.+.++.|+.+.++ +.-+|+=. .||.
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~ 235 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPR 235 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeec
Confidence 1246676764 99999999988888887763 44555544 3663
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.77 E-value=0.14 Score=57.81 Aligned_cols=122 Identities=18% Similarity=0.169 Sum_probs=83.9
Q ss_pred CCceeccCCcchHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 006498 351 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (643)
Q Consensus 351 ~~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~l 423 (643)
.+||+|=+---|-+++ ++.+-+.+|.++..|.+.+++|+|.|..|.++|..+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6888885554444432 34445557788899999999999999999999998864 253 5777
Q ss_pred EeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 424 VDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 424 vD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
+|++- .+. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp----~~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDP----ICA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCc----hhH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 77641 111 11111 11112468888875 99999988888899999999996 55566655554
No 39
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.77 E-value=0.034 Score=61.47 Aligned_cols=131 Identities=18% Similarity=0.293 Sum_probs=78.2
Q ss_pred cHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006498 340 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (643)
Q Consensus 340 nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~ 419 (643)
.||+.=.|-|.+.-. + .|.-+|+-+|+=-|.+.. .++++.|++++|||.+|-.+|..+.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 455555555543211 1 122234444443333333 35889999999999999888887753 354 6
Q ss_pred eEEEEeCCCcccCCCccCCchhchhhc-cccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcE-EEe
Q 006498 420 KIWLVDSKGLIVSSRLESLQHFKKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPI-IFS 496 (643)
Q Consensus 420 ~i~lvD~~GLv~~~R~~~L~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IFa 496 (643)
+|+++.+. .+|.. .....|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra~---~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKAQ---KITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHHH---HHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 89988884 23322 2222221 111223567777775 999999888764 67876642 4565 467
Q ss_pred cCCCC
Q 006498 497 LSNPT 501 (643)
Q Consensus 497 LSNPt 501 (643)
|+.|-
T Consensus 272 LavPR 276 (414)
T PRK13940 272 ISIPQ 276 (414)
T ss_pred eCCCC
Confidence 99997
No 40
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.24 Score=51.41 Aligned_cols=191 Identities=16% Similarity=0.180 Sum_probs=102.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc-------hhhccc--------
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-------KPWAHE-------- 448 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k-------~~fA~~-------- 448 (643)
.||.|+|+|..|.+||..++.. | .+++++|.+ .. .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~----~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDIS----DE---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC----HH---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888642 5 369999964 11 111111 111000
Q ss_pred -------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 006498 449 -------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521 (643)
Q Consensus 449 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Graif 521 (643)
-....++.++++. .|++|=+-.-.-.+.+++++.+.+......|++ ||.+++ .+.++.+.+.-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0113578888876 788885433222366778888877666556663 565554 444544433211223
Q ss_pred eeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCc-cc-CCCCCchhh
Q 006498 522 ASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGL-LY-PPFKNIRKI 599 (643)
Q Consensus 522 ASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~-l~-P~~~~ir~V 599 (643)
....||.|+.... .. .+.....-+++.+ +.+..+...+- +.. +. |..- --|
T Consensus 139 vg~Hf~~p~~~~~---------lv----------evv~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TA----------EIMGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eE----------EEeCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3457877764221 11 1222233355544 44555554432 222 22 2222 245
Q ss_pred HHHHHHHHHHHH---HHcCCCCCCCCchhHHHHH
Q 006498 600 SAHIAAEVAAKA---YELGLATRLPPPKDLVKYA 630 (643)
Q Consensus 600 s~~VA~aVa~~A---~~~GlA~~~~~p~dl~~~i 630 (643)
..++-.++...| +++|+|+ |+|++...
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 556666666555 4689886 45555544
No 41
>PLN00106 malate dehydrogenase
Probab=95.69 E-value=0.061 Score=57.77 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA 446 (643)
|.-+-|+|..|..-. .||+|+|| |..|.-+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888888766 69999999 9999999988763 244 35899999865 1111112332221 21
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHH
Q 006498 447 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAE 509 (643)
Q Consensus 447 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts-~aEct~e 509 (643)
+-. ...+++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 133567888987 8888877776432 34578888999999999999999992 2223333
Q ss_pred HHhcc
Q 006498 510 EAYTW 514 (643)
Q Consensus 510 dA~~w 514 (643)
.++++
T Consensus 148 ~~~~~ 152 (323)
T PLN00106 148 VLKKA 152 (323)
T ss_pred HHHHc
Confidence 44444
No 42
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.69 E-value=0.087 Score=53.80 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=88.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4567777788888889889999999999999999999999998653 53 33559999999987653 43
Q ss_pred hhch-hhccccC------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006498 440 HFKK-PWAHEHE------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (643)
Q Consensus 440 ~~k~-~fA~~~~------~~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 501 (643)
.... .+.+... .. -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2211 1111100 00 11223 3345889999777 5679999999998 5889999999 55
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.055 Score=57.42 Aligned_cols=85 Identities=16% Similarity=0.348 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+=.-+|-+|++.-++-.+.+|++.+++++|+|. .|..+|.+|.. .| -.+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445678889999999999999999999999988 99999999864 24 3577787641
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.+|.+.+++ +|++|...+.++.|++++++
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC
Confidence 257788887 99999999999999998763
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.49 E-value=0.043 Score=57.49 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch-hchhhc
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWA 446 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~-~k~~fA 446 (643)
.|++.+++..+..++.++++++|||.||..|+..++. .|+ ++|+++|+. ..|.+.|.+ ++..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4677788766667888999999999999999988864 364 679999985 333222322 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006498 447 H-EHEPVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 447 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 1 01112345556654 89999988765
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.48 E-value=0.09 Score=51.21 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..++. .| .++++++++ ..+ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC----HHH---HHH
Confidence 677788888888888899999999999997 9999888887764 23 378888765 111 222
Q ss_pred hchhhcc---------ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006498 441 FKKPWAH---------EHEPVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 441 ~k~~fA~---------~~~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
....+.. +..+..++.++++. .|++|-++..+
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g 108 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG 108 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC
Confidence 2211110 01122345667764 78888766644
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.23 E-value=0.069 Score=49.35 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 447 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~ 447 (643)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.. .| -.+++++|++ ..+ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~-----~g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE-----LG------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 5889999998888999999999999888888877753 23 2578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEecC-CCC
Q 006498 448 E--HEPVKELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS-NPT 501 (643)
Q Consensus 448 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS-NPt 501 (643)
. .....++.++++. +|++|-+...+ .. .+++........+..+++=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~-~~~~~~~~~~~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVG-MKPGDELPLPPSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCC-CCCCCCCCCCHHHcCCCCEEEEcCcCCC
Confidence 1 1123466666654 89999776644 32 111110011124566777775 454
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.16 E-value=0.075 Score=57.80 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=63.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc----ccCCCCCHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EHEPVKELV 456 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~----~~~~~~~L~ 456 (643)
+...+++|+|+|.+|.++|+.+.. .|. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999988864 252 58889874 122 2222222221 111124578
Q ss_pred HHHhccCCcEEEEccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 457 DAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
++++. .|++|.+... +..+|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999988633 3458999999985 5678887774
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.63 E-value=0.18 Score=54.86 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=71.9
Q ss_pred CcHHHHHHHHcCCCceeccCCcchHHHHHHH--HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 006498 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAG--LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 416 (643)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAg--ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~ee 416 (643)
..||..=.|-|.+.- | |+++|.++. +..+ +.. .+|++.|++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 345555555554321 1 334444443 3333 333 56999999999999988777777654 364
Q ss_pred hcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHH-HHHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHcCCC
Q 006498 417 TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV-DAVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNE 490 (643)
Q Consensus 417 Ar~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~e 490 (643)
++|+++.+.-. + .+|.. +. +++. ..+.||+|-. ++.....|.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 68998888641 1 22221 10 1111 1368999964 334456777766542 22
Q ss_pred CcEEEecCCCCC
Q 006498 491 KPIIFSLSNPTS 502 (643)
Q Consensus 491 rPIIFaLSNPts 502 (643)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 49
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.56 E-value=0.086 Score=55.13 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCC--CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh
Q 006498 368 AGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (643)
Q Consensus 368 Agll~Alr~~g~--~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f 445 (643)
.|++.+++..+. ++++++++++|||.||-+|+-.|.. .|+ ++|+++++. .+|.+.|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 356777776663 6889999999999999888877754 365 689999874 333222322 12
Q ss_pred cccc--CCCC---CHHHHHhccCCcEEEEccCCCCCCCHHHH
Q 006498 446 AHEH--EPVK---ELVDAVNAIKPTILIGTSGQGRTFTKEVV 482 (643)
Q Consensus 446 A~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Fteevv 482 (643)
.... .... .+.+++. ++|++|.++..+-.++.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 1100 0111 2333333 48999999888754554433
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.49 E-value=0.077 Score=45.57 Aligned_cols=95 Identities=15% Similarity=0.275 Sum_probs=63.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-eCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lv-D~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+++.++.|..... ..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQAT-ADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEEE-SEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccccc-cCChHHhhcc--
Confidence 789999999999999888753 54 34678855 553 2234444444431110 1278899995
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
+|++| ++-.+ ..-+++++.+....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89887 55555 4567788888667788999988886
No 51
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.19 E-value=0.34 Score=47.78 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+= . .-++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~DP-----i-~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEIDP-----I-RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSH-----H-HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECCh-----H-HHHH
Confidence 477777777776 5688999999999999999999999998653 5 3677777630 0 0122
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 513 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~ 513 (643)
.+- +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 221 22234579999986 99999999988899999999996 5555554442 236776665443
No 52
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.75 E-value=0.14 Score=53.03 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=88.0
Q ss_pred CCcchHHHHHHHHHHHHHHhCCC-CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCcc
Q 006498 358 DIQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 436 (643)
Q Consensus 358 DiQGTaaV~LAgll~Alr~~g~~-L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~ 436 (643)
--+-||-=+..++-.+++..|.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34567777888888999986666 9999999999999999999999763 52 345667888888865421
Q ss_pred CCchhchhhccccCCCCC-----------HHH--HHhccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 006498 437 SLQHFKKPWAHEHEPVKE-----------LVD--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN-PT 501 (643)
Q Consensus 437 ~L~~~k~~fA~~~~~~~~-----------L~e--~V~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-Pt 501 (643)
+.+...+...+....... +.+ .+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 111111111110010111 111 4455799999988 668899999998 774 24789999999 55
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.7 Score=49.25 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++..++-.+.+|++.+++++|-|. .|..+|.||.. .| ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4678889999999999999999999999998 99999998864 24 256777764
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (643)
.++|.+.+++ +|++|-..|.++.|+.++|+ +.-+|.=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999998886 556666555
No 54
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.62 E-value=0.13 Score=57.13 Aligned_cols=125 Identities=15% Similarity=0.270 Sum_probs=75.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~-~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 456 (643)
.||+|+||||+ -..+++ ..+.+ ...+ ..+.|||+|-+- ..|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 44433 2233 247899999862 22211111111222222 111 25899
Q ss_pred HHHhccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRT----------------------------------FTKEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~erPIIFaLSNPts 502 (643)
||++. +|.+|=.-.+||. .=.++++.|.++|..-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 7877755555541 12378888999999999999999983
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 006498 503 QSECTAEEAYTWSQGRAIFASG 524 (643)
Q Consensus 503 ~aEct~edA~~wT~GraifASG 524 (643)
...+-+++++. .-+|++|
T Consensus 149 ---ivt~a~~k~~~-~rviGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTG-DRVIGLC 166 (419)
T ss_pred ---HHHHHHHHhcc-CCEEeeC
Confidence 44555666774 3455554
No 55
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.51 E-value=0.13 Score=51.16 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 468899999999999999999998764 75 799999997
No 56
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.27 E-value=0.34 Score=55.24 Aligned_cols=180 Identities=19% Similarity=0.235 Sum_probs=95.6
Q ss_pred cccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCC---CcHHHHHHHHcCCCceeccCCcchHHHH
Q 006498 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFAN---HNAFDLLEKYGTTHLVFNDDIQGTASVV 366 (643)
Q Consensus 290 ~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~---~nAf~lL~ryr~~~~~FNDDiQGTaaV~ 366 (643)
.|.++-.++|+-|+-.. .++++.+.+ + .=.+|-+|.+-. ...+ +..--+-.|-|=-+|.
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l~~----~--~it~ia~e~vpr~sraq~~--------d~lssma~IAGy~Av~ 143 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKLAA----R--GVTVLAMDAVPRISRAQSL--------DALSSMANIAGYRAVI 143 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHHHH----c--CCEEEEeecccccccCCCc--------ccccchhhhhHHHHHH
Confidence 45566677777776322 333333332 1 234566776642 1222 2222344556655555
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc--
Q 006498 367 LAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-- 439 (643)
Q Consensus 367 LAgll~Alr~~g-----~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~-- 439 (643)
.|+-.-..-..| ......|++|+|||.+|++.+..... .| | +++.+|.. ..|.+...
T Consensus 144 ~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aesl 207 (509)
T PRK09424 144 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESM 207 (509)
T ss_pred HHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHc
Confidence 444322111111 13458999999999999988766543 35 3 47777764 12211000
Q ss_pred -------------hhchhhccccCCCCCHHHHH-----hcc-CCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEE
Q 006498 440 -------------HFKKPWAHEHEPVKELVDAV-----NAI-KPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 440 -------------~~k~~fA~~~~~~~~L~e~V-----~~v-kPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIF 495 (643)
.....|+++.. .++.+.. +.+ +.|++|.+++.+| +++++.++.|. ..-.|.
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIV 282 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIV 282 (509)
T ss_pred CCeEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEE
Confidence 01122333211 1222221 111 4999999999876 67999999996 555666
Q ss_pred ecCCCC-CCCCCCH
Q 006498 496 SLSNPT-SQSECTA 508 (643)
Q Consensus 496 aLSNPt-s~aEct~ 508 (643)
=++-+. ..+|++.
T Consensus 283 dvg~~~GG~~e~t~ 296 (509)
T PRK09424 283 DLAAENGGNCELTV 296 (509)
T ss_pred EEccCCCCCccccc
Confidence 677753 3345554
No 57
>PRK05086 malate dehydrogenase; Provisional
Probab=93.25 E-value=0.42 Score=50.92 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=67.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCCCCCHHHHHhc
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNA 461 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~ 461 (643)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999887432 122 257899997522 11110012211 000000 0012467788876
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.|++|=+.|.+.- ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 8988867665321 5578999999999999999999998
No 58
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.22 E-value=2.8 Score=43.84 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=66.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh----hc---c---------
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----WA---H--------- 447 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~----fA---~--------- 447 (643)
+||.|+|+|..|.+||..++.. |. +++++|.+- . .++..++. +. .
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME----G---ALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH----H---HHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999988642 53 688898641 1 12221111 00 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 006498 448 EHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 526 (643)
Q Consensus 448 ~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSP 526 (643)
......++.++++. .|++| ++..... ..+++++.+....+.-.|+. ||..+. +.++..++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 00112467777775 67776 4433321 35677777776555444443 443332 24455555443333445556
Q ss_pred CCCc
Q 006498 527 FDPF 530 (643)
Q Consensus 527 F~pV 530 (643)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6665
No 59
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.19 E-value=0.21 Score=51.33 Aligned_cols=129 Identities=21% Similarity=0.310 Sum_probs=81.3
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--cCCCCCHHHHHhcc
Q 006498 386 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 462 (643)
Q Consensus 386 iv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~v 462 (643)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....|.+...++ .. -.-..++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999887642 41 123689999986411111111233333222 11 1123568899987
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 006498 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (643)
Q Consensus 463 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGSP 526 (643)
.|++|=+.+.++. .-+++++.|.+++...+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~- 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT- 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-
Confidence 8988866655432 3568889999999999999999997 34445556653 2234777774
Q ss_pred CCC
Q 006498 527 FDP 529 (643)
Q Consensus 527 F~p 529 (643)
.++
T Consensus 146 ld~ 148 (263)
T cd00650 146 LDP 148 (263)
T ss_pred chH
Confidence 443
No 60
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.14 E-value=0.28 Score=51.53 Aligned_cols=38 Identities=13% Similarity=-0.114 Sum_probs=29.1
Q ss_pred eCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHH
Q 006498 537 FVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEA 574 (643)
Q Consensus 537 ~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~a 574 (643)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35778888888888888888888777887777766544
No 61
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.04 E-value=0.058 Score=50.95 Aligned_cols=104 Identities=23% Similarity=0.372 Sum_probs=65.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC-CcccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~-GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (643)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-+...-..+..++++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988753 55 3569999997 2111 11011322221111111111245566775
Q ss_pred CCcEEEEccCCCC---C-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGR---T-----------FTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g---~-----------Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.|++|=+.+.+. - +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 899986655541 1 2246777888899999999999997
No 62
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.00 E-value=1.5 Score=47.18 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCCcceeeecCCCCcHHHHHHHHcCCCceecc-C--CcchHHHHHHHHHHHHHH---------------
Q 006498 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-D--IQGTASVVLAGLISAMKF--------------- 376 (643)
Q Consensus 315 defv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-D--iQGTaaV~LAgll~Alr~--------------- 376 (643)
.|++++..+. |-+ +|+.-=-+-. ..++-.--+..+.+.|- + -+.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d-~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFD-TYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccc-hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 5666665541 111 1544333333 34443333457777774 2 245666678888876652
Q ss_pred ----hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCC
Q 006498 377 ----LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV 452 (643)
Q Consensus 377 ----~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~ 452 (643)
.|..|.+.+|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 23468899999999999999999998533 253 688888752 1 101 1111 123
Q ss_pred CCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 453 KELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 453 ~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
.+|.|+++. .|+++=..- ..+.|+++.++.|. +..++.=+|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 579999986 898885421 23567777787775 6678777766
No 63
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.98 E-value=0.19 Score=50.38 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc--CCCCCHH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELV 456 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~--~~~~~L~ 456 (643)
.+|++.||+++|+|..|.+||..++.+ |+ +++.++|.+= |..+ +|+.. ..+..+- .....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDV-VEPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCE-Eccc---ccccc-cCChhhCCCHHHHHHH
Confidence 357889999999999999999999764 75 7899999982 2222 35542 2222111 1113467
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTSQSEC 506 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts~aEc 506 (643)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77888888865443 333567776665432 233555 65677655443
No 64
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.93 E-value=0.91 Score=43.47 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhch
Q 006498 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 443 (643)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~ 443 (643)
-.+..|++..++..|.+++.++++++|.+.. +++-++..+.+ .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 3577888999999999999999999998754 44555444443 353 567777641
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 444 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 444 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
++|.|+++. +|++|-..+.++.|+.|+|+
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 268888987 99999999999999999986
No 65
>PRK08328 hypothetical protein; Provisional
Probab=92.92 E-value=0.063 Score=54.62 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=74.3
Q ss_pred HHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 006498 345 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (643)
Q Consensus 345 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lv 424 (643)
++||..++..|..+.| .+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788777766655322 456788999999999999999999864 75 789999
Q ss_pred eCCCcccCCCccCCchhchhhccccCC----CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 006498 425 DSKGLIVSSRLESLQHFKKPWAHEHEP----VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSN 499 (643)
Q Consensus 425 D~~GLv~~~R~~~L~~~k~~fA~~~~~----~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSN 499 (643)
|.+ .+.. .+|+.+ --|-.+.-. .....+.++...|++.|=... +.++++-+...-+ +.-+|+ +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 987 2221 234431 111111111 112345577788998876533 4567766554332 445666 5567
Q ss_pred CCC
Q 006498 500 PTS 502 (643)
Q Consensus 500 Pts 502 (643)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 663
No 66
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.75 E-value=0.71 Score=49.73 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc--ccCCCCCHHH
Q 006498 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHEPVKELVD 457 (643)
Q Consensus 381 L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~--~~~~~~~L~e 457 (643)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+... ... ...+..+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34569999999 9999999987752 243 3689999993 21 111112332211 111 1111133478
Q ss_pred HHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 458 AVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
+++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8887 8988756555322 4568899999999999999999999
No 67
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.71 E-value=0.47 Score=50.55 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++.=++-.+.+++.+++|++|.| ..|.-+|.++.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 357778888889999999999999999999 999999999864 253 35566442
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1346788887 99999999999999999984
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.59 E-value=1.7 Score=49.13 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=68.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh------------chhhccc--c
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAHE--H 449 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~------------k~~fA~~--~ 449 (643)
.||-|+|+|..|.+||..++.. |. +++++|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998753 64 68888874 1111111110 0011110 1
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 006498 450 EPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (643)
Q Consensus 450 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGSP 526 (643)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++..+.. .|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899987 78887 4444432 4566666666655555666554322 22 33333332 3454444 58
Q ss_pred CCCcc
Q 006498 527 FDPFE 531 (643)
Q Consensus 527 F~pV~ 531 (643)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88874
No 69
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.54 E-value=0.44 Score=50.20 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=76.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCCCCCHHHHHhccC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~vk 463 (643)
||.|+|+|.+|..+|..++. .|+ ..+|.++|.+-=..++-..+|.+........ .-...+. +.++ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~--~ 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCK--D 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhC--C
Confidence 89999999999999998764 254 3579999985221111111122111000010 0011234 3455 4
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 006498 464 PTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 526 (643)
Q Consensus 464 PtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G--raifASGSP 526 (643)
.|++|=+.+.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++= +-||++|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988877521 12577888889999999999999983 445555554311 347777754
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.26 E-value=0.32 Score=51.34 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888888999999999999998887766643 365 689999984
No 71
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.07 E-value=0.37 Score=51.42 Aligned_cols=126 Identities=15% Similarity=0.271 Sum_probs=78.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCCCCCHHHHHhcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 462 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v 462 (643)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+-. +|-+. .-...+. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 365 3679999974211111111133222 22111 0111344 45665
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 006498 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (643)
Q Consensus 463 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGSP 526 (643)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. +.....+++++ .-+=+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 8999877666421 1156788888999999999999998 34455666665 22336677643
No 72
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.02 E-value=2.3 Score=44.28 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998653 53 68999975
No 73
>PRK08223 hypothetical protein; Validated
Probab=91.98 E-value=0.34 Score=51.59 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=45.6
Q ss_pred HHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 006498 342 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (643)
Q Consensus 342 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i 421 (643)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677788766665544433 568899999999999999999999875 76 789
Q ss_pred EEEeCC
Q 006498 422 WLVDSK 427 (643)
Q Consensus 422 ~lvD~~ 427 (643)
.++|.+
T Consensus 55 ~lvD~D 60 (287)
T PRK08223 55 TIADFD 60 (287)
T ss_pred EEEeCC
Confidence 999988
No 74
>PLN02928 oxidoreductase family protein
Probab=91.89 E-value=1.8 Score=46.99 Aligned_cols=139 Identities=12% Similarity=0.181 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 006498 360 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~----------------~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~l 423 (643)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+.. .|+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~a-----fG~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRP-----FGV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhh-----CCC-------EEEE
Confidence 34566666766666653 2457999999999999999999999863 264 6888
Q ss_pred EeCCCcccCCCccCCchhc----hhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 424 VDSKGLIVSSRLESLQHFK----KPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 424 vD~~GLv~~~R~~~L~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88752 110000000 00 0111111234689999987 89998652 234799999999996 567777
Q ss_pred ecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 006498 496 SLSNPTSQSECTAEEAYT--WSQGRAIFA 522 (643)
Q Consensus 496 aLSNPts~aEct~edA~~--wT~GraifA 522 (643)
=.|. .++-=|+|+- ...|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6665 4555454432 135665444
No 75
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.72 E-value=1.4 Score=48.54 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a-----~G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRG-----LGW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECCcc------cc-c-c-
Confidence 4556789999999999999999999999999999999998864 365 678888631 10 0 0
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEE---cc-----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIG---TS-----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 513 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S-----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~ 513 (643)
......+|.|+++. .|+++= ++ ..-+.|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 01123579998886 787761 11 123689999999996 6778886665 4444444442
Q ss_pred c--cCCcEEEeeCCCC--CCcccCCeeeCcCCCCcccccchhhHHHHHhCC
Q 006498 514 W--SQGRAIFASGSPF--DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 560 (643)
Q Consensus 514 w--T~GraifASGSPF--~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a 560 (643)
- ..|+...|-=-=| +|. .+.... ..|..+-|=|+-....++.
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHH
Confidence 1 2454333321111 111 121111 1378888877755555443
No 76
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=91.55 E-value=0.44 Score=53.06 Aligned_cols=125 Identities=18% Similarity=0.308 Sum_probs=75.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~-G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 456 (643)
.||+|+||||+ -.-.|+..+.+.. .+ ....|||+|-+ ..|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444445444322 34 24789999976 44432222222233322 112 25788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 006498 457 DAVNAIKPTILIGTS--------------------------GQGRTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 457 e~V~~vkPtvLIG~S--------------------------~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 502 (643)
||++. +|.+|-.- |.||.|. .++++.|.++++..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99887 77766433 3334433 38899999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 006498 503 QSECTAEEAYTWSQGRAIFASG 524 (643)
Q Consensus 503 ~aEct~edA~~wT~GraifASG 524 (643)
..+ .+-+++++...-+|++|
T Consensus 147 -di~-t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEV-TEAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHH-HHHHHHhCCCCcEEEEC
Confidence 222 23344555333455554
No 77
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.42 E-value=0.54 Score=51.45 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=72.2
Q ss_pred HHHHcCCCce--eccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 006498 345 LEKYGTTHLV--FNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422 (643)
Q Consensus 345 L~ryr~~~~~--FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~ 422 (643)
++||..++.+ |.-+-| .+|++.||+++|+|..|.-||..|+.+ |+ ++|.
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ 69 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTIT 69 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEE
Confidence 5789877655 443322 678899999999999999999999764 75 7899
Q ss_pred EEeCCCcccCCCc--------cCCchhchhhccc-----cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCC
Q 006498 423 LVDSKGLIVSSRL--------ESLQHFKKPWAHE-----HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFT 478 (643)
Q Consensus 423 lvD~~GLv~~~R~--------~~L~~~k~~fA~~-----~~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft 478 (643)
++|.+=+ ..+.- +++-..|..-|.. .+ .. .++.+.++. .|++|.++.-. =+
T Consensus 70 ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~ 144 (370)
T PRK05600 70 LIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--AT 144 (370)
T ss_pred EEeCCEE-ccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HH
Confidence 9999832 22110 0111112111110 00 01 245556654 78887766532 25
Q ss_pred HHHHHHHHcCCCCcEEEe
Q 006498 479 KEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 479 eevv~~Ma~~~erPIIFa 496 (643)
+-.|..++.....|.|++
T Consensus 145 r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 145 KFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 566677777777888876
No 78
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.34 E-value=0.46 Score=49.29 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=65.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh-hcc---c-----------
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-WAH---E----------- 448 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~-fA~---~----------- 448 (643)
+||.|+|+|..|.+||..++.. | .+++++|.+ ..+-+.+.....+ +.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 65 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK----QEQLESAQQEIASIFEQGVARGKLTEAARQAA 65 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 5799999999999999988653 5 368888875 1111111110000 000 0
Q ss_pred ---cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006498 449 ---HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (643)
Q Consensus 449 ---~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 525 (643)
.....++.++++. .|++|=+-...-...+++++.+.+......|++ ||.++ ..+++..++.+-..=|....
T Consensus 66 ~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~g~h 139 (288)
T PRK09260 66 LARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVIAMH 139 (288)
T ss_pred HhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEEEEe
Confidence 0112467777776 788774433221224455555655554444443 33322 34444444433222244445
Q ss_pred CCCCcc
Q 006498 526 PFDPFE 531 (643)
Q Consensus 526 PF~pV~ 531 (643)
+|.||.
T Consensus 140 ~~~Pv~ 145 (288)
T PRK09260 140 FFNPVH 145 (288)
T ss_pred cCCCcc
Confidence 676663
No 79
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.26 E-value=0.45 Score=50.22 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|++.+++..+.++++.+++++|||-||-+|+-.|.+ .|+ ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556888999999999999999877754 364 689999984
No 80
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=91.25 E-value=0.62 Score=51.60 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=72.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc------CCCCCHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH------EPVKELVDA 458 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~------~~~~~L~e~ 458 (643)
||.|+|||+.|.+.+- +..+..... .+-..++|+|.+ .++.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did----~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDID----EERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 111211111 133589999975 222111111111111111 113578999
Q ss_pred HhccCCcEEEEccCCCC---------------CCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 006498 459 VNAIKPTILIGTSGQGR---------------TFT---------------------KEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g---------------~Ft---------------------eevv~~Ma~~~erPIIFaLSNPts 502 (643)
++. .|++|=.-.+++ +|. .++++.|.+++++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 887775444221 121 27777777888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC-CC
Q 006498 503 QSECTAEEAYTWSQGRAIFASG-SP 526 (643)
Q Consensus 503 ~aEct~edA~~wT~GraifASG-SP 526 (643)
..+ .+-+++.++ .-++.+| +|
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcH
Confidence 322 233446665 5577777 44
No 81
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.06 E-value=1.5 Score=44.69 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCC
Q 006498 364 SVVLAGLISAMKFLG---------GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (643)
Q Consensus 364 aV~LAgll~Alr~~g---------~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~ 433 (643)
-+|-.|++-=|+-.| .+++.++++++|-+. .|.-+|.||.. .| -.+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345556666666554 489999999999775 57777777653 24 368899999988866
Q ss_pred CccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHH
Q 006498 434 RLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVE 483 (643)
Q Consensus 434 R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~ 483 (643)
+...+.+.+.+. ....++|.|.+++ +|++|-..|.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 643332211100 0111248898987 9999999999997 8999986
No 82
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.93 E-value=0.44 Score=51.76 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 57889999999999999999999764 75 789999987
No 83
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.90 E-value=0.77 Score=44.85 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=28.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 75 789999997
No 84
>PRK15076 alpha-galactosidase; Provisional
Probab=90.89 E-value=0.58 Score=52.19 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=74.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch-hchhhccccCC-----CCCHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHEP-----VKELVD 457 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~-~k~~fA~~~~~-----~~~L~e 457 (643)
.||.|+|||+.|. +..++..+....++ +-..++|+|.+ .+|.+.... .+.-++..... .+++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid----~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDID----PERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCC----HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333322233 33589999975 222110000 11111111111 357888
Q ss_pred HHhccCCcEEEEccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 006498 458 AVNAIKPTILIGTSGQGRTF-------------------------------------TKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~F-------------------------------------teevv~~Ma~~~erPIIFaLSNP 500 (643)
+++. .|++|=..+++|.- -.|+++.|.+++...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8886 78777655554311 14778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeC-CCCC
Q 006498 501 TSQSECTAEEAYTWSQGRAIFASG-SPFD 528 (643)
Q Consensus 501 ts~aEct~edA~~wT~GraifASG-SPF~ 528 (643)
.. +..+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 2222333553 34578887 6644
No 85
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.84 E-value=0.34 Score=52.30 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468889999999999999999999875 75 7899999983
No 86
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.72 E-value=0.58 Score=49.13 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=42.0
Q ss_pred CceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 352 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 352 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..=+|-| ..|++.+++..+..++++++|++|||-||.+||..++. .|. ++|+++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4456666 45677888877778889999999999777766655543 364 679999874
No 87
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=90.65 E-value=4.6 Score=44.88 Aligned_cols=98 Identities=26% Similarity=0.425 Sum_probs=58.4
Q ss_pred CCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHH---------HHHHHhc-CCCcceeeecCCCCcHHH
Q 006498 274 PSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFM---------TAVKQNY-GERILIQFEDFANHNAFD 343 (643)
Q Consensus 274 P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv---------~av~~~f-Gp~~lIqfEDf~~~nAf~ 343 (643)
|...+|.+.+.-..=+++.+||-+ -+||+.++.+++ ..+.+.+ |.++.+-.||+....+|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~f---------~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K 90 (397)
T PRK04346 20 PETLMPALEELEEAYEKAKNDPEF---------QAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHK 90 (397)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchH
Confidence 344445555555555667777754 356666666664 3355566 567788888887777775
Q ss_pred HHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEE-eCcchHHHHHHHHHHH
Q 006498 344 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF-LGAGEAGTGIAELIAL 404 (643)
Q Consensus 344 lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~-~GAGsAG~GIA~li~~ 404 (643)
+ | .++.-++.|. ..|+ .+++. -|||..|+++|-....
T Consensus 91 ~--r-----------------~al~~~l~A~-~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 91 I--N-----------------NVLGQALLAK-RMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred H--H-----------------HHHHHHHHHH-HcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 4 1 1222333332 3343 35666 6899988888776554
No 88
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.53 E-value=2.3 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..||.|+|+|..|.++|..+... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999753 5 357777765
No 89
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.52 E-value=1.3 Score=47.24 Aligned_cols=126 Identities=19% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 458 (643)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44699999999999999988764 254 25999997521111111012222 1111110 1124565 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 006498 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifA 522 (643)
++. .|++|=+.+.+.. +-+++.+.|.+++..-+++=.|||. ......++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 666 8988866655432 2348899999999999888889998 233455656552 134777
Q ss_pred eCC
Q 006498 523 SGS 525 (643)
Q Consensus 523 SGS 525 (643)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 774
No 90
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.38 E-value=2.5 Score=46.70 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=83.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+.. .|+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a-----~G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEA-----LGI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEECCc------ccc--c
Confidence 345666888999988888999999999999999999999999864 265 67788853 111 0
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 511 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S~-----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA 511 (643)
. ......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|. -+.-=|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123579999876 898871 121 34689999999996 6778886654 45555555
Q ss_pred h
Q 006498 512 Y 512 (643)
Q Consensus 512 ~ 512 (643)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 91
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.29 E-value=0.7 Score=48.06 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=54.8
Q ss_pred HHHHHHHHHH-hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh
Q 006498 367 LAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (643)
Q Consensus 367 LAgll~Alr~-~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f 445 (643)
..|++++++. .+..+++.+++++|||.+|-+|+..+.. .|+ .+++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777764 5778999999999999888888887763 354 579999885 222 22222222
Q ss_pred cccc-CCC-CCHHHHHhccCCcEEEEccCCC
Q 006498 446 AHEH-EPV-KELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 446 A~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
.... -+. .++.+.+. +.|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhccc--cCCEEEECCcCC
Confidence 1110 011 12334444 389999888765
No 92
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.24 E-value=0.88 Score=48.75 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=75.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCHHHHH
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 459 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L~e~V 459 (643)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=......-++.+. ..+.... ....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988653 365 23999997532222111012211 1111111 112456 567
Q ss_pred hccCCcEEEEccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--Cc
Q 006498 460 NAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GR 518 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--Gr 518 (643)
+. .|++|=+.+.++.- -+++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 65 89998666554321 2478888888998879999999982 22334445442 13
Q ss_pred EEEeeCC
Q 006498 519 AIFASGS 525 (643)
Q Consensus 519 aifASGS 525 (643)
-+|++|.
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4677763
No 93
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.02 E-value=1.2 Score=47.47 Aligned_cols=83 Identities=17% Similarity=0.338 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGsA-G~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.-++-.|.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45678888999999999999999999999998 9999999864 243 45555432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999997775
No 94
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.95 E-value=1.3 Score=47.57 Aligned_cols=92 Identities=13% Similarity=0.275 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++.=++-.|.+++.++|+|+|.| ..|..+|.+|... | -.+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778888889999999999999999996 9999999999752 5 357777653 0
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (643)
.++.|++++ .|++|=.-+.++.+++++++ +.-+|.=+|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989888888743 455666555
No 95
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.83 E-value=1.4 Score=47.29 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=69.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc--ccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL--v~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
||.|.|| |..|..+|-.|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..|+++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998741 11111112444332333221111457788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEecCCCC
Q 006498 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASL-NEKPIIFSLSNPT 501 (643)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~-~erPIIFaLSNPt 501 (643)
.|++|=+.+.+ |- .-+++++.|+++ ++.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555554 21 125778888889 4999999999997
No 96
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.79 E-value=2.3 Score=49.02 Aligned_cols=163 Identities=22% Similarity=0.216 Sum_probs=107.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDA 458 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (643)
..+--++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|-+--..|+.. -+..=..|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHH
Confidence 356679999999999999998875 487 58899998776 566666677777777753 222213355
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCee
Q 006498 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNV 536 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~ 536 (643)
++. .+++..+|-|. +-|.+||..+=+
T Consensus 77 l~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~----------------------------------- 104 (532)
T COG0578 77 LAE-----------------REVLLRIAPHLVEPLPFLLPHLPGL----------------------------------- 104 (532)
T ss_pred HHH-----------------HHHHHHhCccccccCcCeEeccCCc-----------------------------------
Confidence 543 47777777654 344555554420
Q ss_pred eCcCCCCcccccchhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHH
Q 006498 537 FVPGQANNAYIFPGLGLGLIMSGA-IRV--HDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYE 613 (643)
Q Consensus 537 ~~p~Q~NN~yiFPGiglG~l~s~a-~~I--td~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~aVa~~A~~ 613 (643)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-.- .+ ++..+++++.|.+
T Consensus 105 -----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~ 176 (532)
T COG0578 105 -----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAE 176 (532)
T ss_pred -----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHh
Confidence 0125678899999999993 333 22233335666666677776766888996653 22 2666788999988
Q ss_pred cCC
Q 006498 614 LGL 616 (643)
Q Consensus 614 ~Gl 616 (643)
.|-
T Consensus 177 ~Ga 179 (532)
T COG0578 177 HGA 179 (532)
T ss_pred ccc
Confidence 884
No 97
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.74 E-value=0.75 Score=50.49 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 567889999999999999999999864 76 789999987
No 98
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.72 E-value=1.5 Score=46.90 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-.|++..++-.+.+|+..++|++|.|. -|..+|.+|.. .|. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 34678889999999999999999999999998 89999998864 242 46677642
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788886 99999999999999999775
No 99
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.63 E-value=0.62 Score=42.98 Aligned_cols=35 Identities=37% Similarity=0.596 Sum_probs=30.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 799999997
No 100
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.62 E-value=1.1 Score=47.67 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-.|++.=++-.+.+|++.+++++|-+ .-|.-+|.++.. .| ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC-------------
Confidence 3466788888889999999999999999999 888888887753 23 356666653
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVV 482 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv 482 (643)
..+|.+.++. +|++|+.-+.++.+|+++|
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~v 214 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMV 214 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHc
Confidence 1368899987 9999999999999999997
No 101
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.21 E-value=1.1 Score=47.00 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=72.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--cCCCCCHHHHHhc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNA 461 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~ 461 (643)
.||.|+|||..|.++|..++. .|+ . .++|+|.+-=..++....+.+-....... -....+. ++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999998764 254 2 79999983111111000011100000000 0112356 45665
Q ss_pred cCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---cEEEeeC
Q 006498 462 IKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG---RAIFASG 524 (643)
Q Consensus 462 vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G---raifASG 524 (643)
.|++|=+-+.+ | -.-+++++.|.+.+...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 89888433333 2 12356777888899999888889997 22333444544 4 5688888
Q ss_pred CCCC
Q 006498 525 SPFD 528 (643)
Q Consensus 525 SPF~ 528 (643)
.-.+
T Consensus 145 t~ld 148 (307)
T PRK06223 145 GVLD 148 (307)
T ss_pred CCcH
Confidence 5443
No 102
>PRK14851 hypothetical protein; Provisional
Probab=89.08 E-value=1.5 Score=51.83 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCc-------cCCchhchhhccc---
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-------ESLQHFKKPWAHE--- 448 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~-------~~L~~~k~~fA~~--- 448 (643)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-.++-. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 567899999999999999999999875 76 79999998733221110 0111122222211
Q ss_pred -c----------CCC--CCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEecC----------CCCCCC
Q 006498 449 -H----------EPV--KELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS----------NPTSQS 504 (643)
Q Consensus 449 -~----------~~~--~~L~e~V~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS----------NPts~a 504 (643)
. ... .++.+.+++ .|++|-...-. .| ++..|...|..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246667765 89988544321 12 345677778888999998754 676
Q ss_pred CCCHHHHhcccCC
Q 006498 505 ECTAEEAYTWSQG 517 (643)
Q Consensus 505 Ect~edA~~wT~G 517 (643)
..+.++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5788888888777
No 103
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.91 E-value=0.8 Score=47.11 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc----CCCCCH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKEL 455 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~----~~~~~L 455 (643)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+= |..+ +|+.+ .++... ....-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~-V~~s---NlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV-VCVS---NLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ECch---hhcch--hCcChhhCCCcHHHHH
Confidence 57789999999999999999999764 76 7999999972 2222 24322 233211 111346
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 524 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASG 524 (643)
.+-++.+.|++=|-... .-++++-+...-...-.=||-+.-|+..+... .+ +.+..+.-++.+|
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L-~~--~c~~~~ip~I~s~ 134 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVAL-IA--YCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHH-HH--HHHHhCCCEEEEe
Confidence 67777777877665443 24665555444322223355556676644332 11 2233455555544
No 104
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.79 E-value=0.99 Score=48.00 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=54.6
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc
Q 006498 369 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (643)
Q Consensus 369 gll~Alr~~g--~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA 446 (643)
|++.+|+-.+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++. .+|...| .+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt----~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT----RERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC----HHHHHHH---HHHhh
Confidence 5677888766 456689999999999999998888753 64 789999984 4443222 22333
Q ss_pred ccc-----CCCCCHHHHHhccCCcEEEEccCCC
Q 006498 447 HEH-----EPVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 447 ~~~-----~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
+.. ....++.+ .+ ..|+||=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 11 479999777665
No 105
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.75 E-value=0.59 Score=50.51 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468889999999999999999998764 75 789999996
No 106
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.57 E-value=2.1 Score=45.75 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc
Q 006498 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (643)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~ 448 (643)
|.+++..+... ...+++++|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555544422 346899999999998888877543 243 678888773 222 22232222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006498 449 ----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (643)
Q Consensus 449 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 510 (643)
-....++.++++. .|++|-++... ..|+.+.++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1224678999975 99999775443 356666554 222444444322 246777654
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.53 E-value=0.44 Score=45.39 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=50.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhch--hhccc---cCC---CCCHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 456 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 456 (643)
||.|+|||+.|+++|..+... | .++.|.+++.-.. +.++..+. .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998753 4 5677777653111 11222111 11110 111 25799
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 489 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 489 (643)
++++. +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 332 3345789999998644
No 108
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.11 E-value=2.5 Score=45.38 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=68.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccC--CCCCHHHHHhc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~--~~~~L~e~V~~ 461 (643)
||.|+|| |..|..+|-.|+. .|+ -..+.|+|.+ +. ++-.-+|.+-. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~a-~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-NT-PGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-cc-ceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3689999998 32 22211254433 1111111 11346677887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.|++|=+.|.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666654 21 2246777888899999999999998
No 109
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.11 E-value=0.87 Score=45.63 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=68.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc-CC-----CCCHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELVDA 458 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~-~~-----~~~L~e~ 458 (643)
||+|+||||+-. ..++...+.+...++ ...|+|+|.+ ..|-+.....-+.++++. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999964 445555554434443 4689999987 344221223333344321 12 2689999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 006498 459 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 502 (643)
++. +|.+|=.-.+| |.|. .|+++.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887443333 2222 48899999999999999999998
Q ss_pred CCCCC
Q 006498 503 QSECT 507 (643)
Q Consensus 503 ~aEct 507 (643)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 110
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.03 E-value=1.4 Score=42.80 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCC
Q 006498 374 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 453 (643)
Q Consensus 374 lr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~ 453 (643)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..-- . + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~-----~---~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP-----E---E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH-----H---H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh-----h---h---hcccccceee
Confidence 34667889999999999999999999999642 64 78888885220 0 0 1111111235
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEe
Q 006498 454 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAIFA 522 (643)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w--T~GraifA 522 (643)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|. .++--|+|+-. .+|+.-.|
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ga 149 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIAGA 149 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEEEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCceE
Confidence 89999987 88887432 124799999999996 5667776555 55555544321 35665433
No 111
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.88 E-value=2.3 Score=42.59 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=59.7
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc---cc-c----CCCCCH
Q 006498 385 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---HE-H----EPVKEL 455 (643)
Q Consensus 385 riv~~G-AGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA---~~-~----~~~~~L 455 (643)
||.|+| +|..|..+|..+++. | .+++++|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999998642 4 467777763 221 222111111 10 0 011356
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~ 503 (643)
.|+++. +|++| ++... ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78776 44433 3457888888654344799999999854
No 112
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.88 E-value=0.22 Score=47.99 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=49.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC-------------CcccCCCccCCchhchhhcc
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-------------GLIVSSRLESLQHFKKPWAH 447 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~-------------GLv~~~R~~~L~~~k~~fA~ 447 (643)
+.-.||||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999988653 53 34445542 0000 00000000 00222
Q ss_pred c------cCCCCCHHHHHhccCCcEEEEcc-----CCCCCCCHHHHHHHH
Q 006498 448 E------HEPVKELVDAVNAIKPTILIGTS-----GQGRTFTKEVVEAMA 486 (643)
Q Consensus 448 ~------~~~~~~L~e~V~~vkPtvLIG~S-----~~~g~Fteevv~~Ma 486 (643)
. ......|.+.++. .|++|+.. ..+-+||+|.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 1111368888886 79999753 344689999999996
No 113
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.75 E-value=1.1 Score=50.24 Aligned_cols=130 Identities=15% Similarity=0.244 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~-~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 456 (643)
.||+|+||||+ -.-.|+..+.+. ..++ ...|+|+|.+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 454555555432 2332 4789999986 34422122222233222 112 25788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 006498 457 DAVNAIKPTILIGTS--------------------------GQGRTF--------TKEVVEAMASLNEKPIIFSLSNPTS 502 (643)
Q Consensus 457 e~V~~vkPtvLIG~S--------------------------~~~g~F--------teevv~~Ma~~~erPIIFaLSNPts 502 (643)
||++. +|.+|=.- |.||.| -.++++.|.+.|...+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 77665322 333332 258888999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeCCCCC
Q 006498 503 QSECTAEEAYTWSQGRAIFASGSPFD 528 (643)
Q Consensus 503 ~aEct~edA~~wT~GraifASGSPF~ 528 (643)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322111334455544555543
No 114
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.70 E-value=1.3 Score=46.97 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=73.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc-c--cCCCCCHHHHHh
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-E--HEPVKELVDAVN 460 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~-~--~~~~~~L~e~V~ 460 (643)
.||.|+|+|..|.++|-.++. .|+ + +++++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 379999999999999998764 254 2 599999832222211000111 001100 0 011246766 55
Q ss_pred ccCCcEEEEccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 006498 461 AIKPTILIGTSGQG---R-T------FT----KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 524 (643)
Q Consensus 461 ~vkPtvLIG~S~~~---g-~------Ft----eevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifASG 524 (643)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78887555533 1 1 22 45667788899999999999998 455555666642 12377777
Q ss_pred C
Q 006498 525 S 525 (643)
Q Consensus 525 S 525 (643)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 115
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=87.51 E-value=3.8 Score=44.17 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
||.|+|| |..|..+|..|+. .|+-..+..-.+.|+|.+.-. .+.-.-+|.+..-++...-....+..+.++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999988764 244100000169999974221 1111112444332332111111255677876
Q ss_pred cCCcEEEEccCCCCC--C------------CHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeC
Q 006498 462 IKPTILIGTSGQGRT--F------------TKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 524 (643)
Q Consensus 462 vkPtvLIG~S~~~g~--F------------teevv~~Ma~~-~erPIIFaLSNPts~aEct~edA~~wT~G--raifASG 524 (643)
.|++|=+.+.+.. - =+++++.|+++ +..-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866665421 1 24677888889 4899999999997 4555556666533 2388888
Q ss_pred CCCCCc
Q 006498 525 SPFDPF 530 (643)
Q Consensus 525 SPF~pV 530 (643)
.=.+..
T Consensus 151 t~LDs~ 156 (324)
T TIGR01758 151 TRLDHN 156 (324)
T ss_pred eehHHH
Confidence 755543
No 116
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.50 E-value=1.4 Score=50.60 Aligned_cols=176 Identities=15% Similarity=0.219 Sum_probs=91.7
Q ss_pred ccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHHHHHHHcCCCceec--cCCcchHHHH
Q 006498 289 EKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVV 366 (643)
Q Consensus 289 e~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~ 366 (643)
+.|.++-.++|+-|+-.. .++++.+.+ + .-.+|-+|.+-. + +|- .+..+|. ..|.|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l~~----k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKLAA----K--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHHHH----c--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566777787775432 333333332 1 234566775531 0 111 1233332 4566666666
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch-
Q 006498 367 LAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH- 440 (643)
Q Consensus 367 LAgll~Alr~~g-----~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~- 440 (643)
.|+-.-.-...| ......|++|+|+|.+|+..+..+.. .|. ++.++|.+.-.. .+...+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rl-e~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVK-EQVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHH-HHHHHcCCe
Confidence 554333222222 13456899999999999998777654 252 377777754210 00000100
Q ss_pred -----------hchhhccccCCC------CCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEecC
Q 006498 441 -----------FKKPWAHEHEPV------KELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 441 -----------~k~~fA~~~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLS 498 (643)
...-||+...+. .-+.|.++. .|++|++.-++| +.|+++++.|.. .-+|.=||
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---GsvIVDlA 284 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---GSVIVDLA 284 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---CCEEEEee
Confidence 011223221110 114555554 999999994444 489999999973 33444444
Q ss_pred C
Q 006498 499 N 499 (643)
Q Consensus 499 N 499 (643)
-
T Consensus 285 ~ 285 (511)
T TIGR00561 285 A 285 (511)
T ss_pred e
Confidence 3
No 117
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.38 E-value=4.1 Score=43.85 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=79.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
-||+|.|| |..|..+|..|+.. |+--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 99999999987642 43100112379999985411 111100122211122111111357888898
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 006498 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 523 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPts~aEct~edA~~wT~G--raifAS 523 (643)
. +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 6 9999866666422 23 56778888885 689999999997 3444455555422 112666
Q ss_pred CCCCC
Q 006498 524 GSPFD 528 (643)
Q Consensus 524 GSPF~ 528 (643)
|.=.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 65433
No 118
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.64 E-value=3.8 Score=44.27 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=63.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEeCCCcccCCCccCC---chhchhhcccc------C-
Q 006498 384 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL---QHFKKPWAHEH------E- 450 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~---~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L---~~~k~~fA~~~------~- 450 (643)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 3333345321 22445699998876553112 12222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEE
Q 006498 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIF 495 (643)
Q Consensus 451 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIF 495 (643)
..-++.|.++...+||+|-+++.. ...++++ .+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK--NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH--HHHHHHHHHHh--hCCcEEE
Confidence 112788888878899999998633 3344444 444 4677775
No 119
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=86.51 E-value=17 Score=40.90 Aligned_cols=179 Identities=23% Similarity=0.245 Sum_probs=120.6
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHH---HHHHHcCC-----Ccee----------ccCCcchHH
Q 006498 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTT-----HLVF----------NDDIQGTAS 364 (643)
Q Consensus 303 ~R~~geeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~~-----~~~F----------NDDiQGTaa 364 (643)
|..+..|-.+|...||+++.+.-||+.-|-=+|++.. ... +.+.|+.- .+|| .+----||-
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~-~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~ 188 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTN-PQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGY 188 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCC-HHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccce
Confidence 3467788899999999999999999999999999853 222 56666531 2222 122223433
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh
Q 006498 365 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 444 (643)
Q Consensus 365 V~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~ 444 (643)
=+.-++-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+=|++|-|++.. .|+..+..
T Consensus 189 Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~ 255 (411)
T COG0334 189 GVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALL 255 (411)
T ss_pred ehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHH
Confidence 23333347888889889999999999999999998888642 53 5566778999888763 35533222
Q ss_pred hccc----------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 006498 445 WAHE----------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 502 (643)
Q Consensus 445 fA~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 502 (643)
..++ .+...+ |.+-.+..||||=+.. ++..|++-++.+.+. +|.=-+| ||+
T Consensus 256 ~~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t 317 (411)
T COG0334 256 ELKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT 317 (411)
T ss_pred HHhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC
Confidence 1111 111112 3344467899996655 569999999888632 8888888 773
No 120
>PLN02306 hydroxypyruvate reductase
Probab=86.37 E-value=5.4 Score=44.12 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=109.3
Q ss_pred cCCCceeccCC---cchHHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcchHHHHHHHHHHH
Q 006498 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF---------------------LGGSLADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~---------------------~g~~L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
+..+.+.|--- ..+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34677777421 23444566777766542 1346889999999999999999999864
Q ss_pred HHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc----------ccCCCCCHHHHHhccCCcEEEEc----
Q 006498 405 EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----------EHEPVKELVDAVNAIKPTILIGT---- 470 (643)
Q Consensus 405 ~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~----------~~~~~~~L~e~V~~vkPtvLIG~---- 470 (643)
+| |+ +++.+|+..- . .+..+...+.. ......+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6888887421 0 01111011100 00112489999987 8998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEeeCC-CC--CCcccCCeeeCcCCCCcc
Q 006498 471 SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAIFASGS-PF--DPFEYGDNVFVPGQANNA 545 (643)
Q Consensus 471 S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w--T~GraifASGS-PF--~pV~~~Gk~~~p~Q~NN~ 545 (643)
...-|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.-.| |- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~gA-aLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFRV-GLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeEE-EEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2334789999999996 555666555 455555554422 24554332 21 01 111 011 01245688
Q ss_pred cccchhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 006498 546 YIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (643)
Q Consensus 546 yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (643)
.+-|=+|-...- -...|...+++-+.....
T Consensus 316 ilTPHiag~T~e-----~~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 316 VVVPHIASASKW-----TREGMATLAALNVLGKLK 345 (386)
T ss_pred EECCccccCcHH-----HHHHHHHHHHHHHHHHHc
Confidence 888887732211 123444445555544443
No 121
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.21 E-value=3 Score=44.47 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-+|++.=++-.+.+++++++|++|-+ ..|.-+|.||.. .|. .+.+|+++ .
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C-----
Confidence 3466788889999999999999999999998 889999988853 242 34455442 1
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246778886 99999999999999999996
No 122
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.20 E-value=1.8 Score=43.29 Aligned_cols=118 Identities=12% Similarity=0.185 Sum_probs=68.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
++.||.|+|+|..|..+|..++.. |.. -.++++++++. + .+.+...++.|- .....++.++++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888642 310 12346666542 0 112333333331 1123567888875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeC
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASG 524 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~-GraifASG 524 (643)
.|++| ++..+. .-+++++.++.+.+..+|+.++.-.+ .++.-+|.+ +..++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 78776 444443 45899999886534457777776653 334444443 34455555
No 123
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.19 E-value=1.7 Score=45.68 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 447 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~ 447 (643)
.|++.+++..|.+. +.++|++|||-|+.+|+-.|.+ .|. ++|+++++. .+|.+.|.+ .|..
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~----~~~a~~la~---~~~~ 168 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN----EKTGKALAE---LYGY 168 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHHHHHHHH---HhCC
Confidence 45677777666653 4699999999999999877754 364 679999985 333222221 1210
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006498 448 EHEPVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 448 ~~~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
++.+.+..-++|++|-++..|
T Consensus 169 ------~~~~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 169 ------EWRPDLGGIEADILVNVTPIG 189 (272)
T ss_pred ------cchhhcccccCCEEEECCccc
Confidence 111112223589999887755
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.17 E-value=2.7 Score=44.17 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhcc-C
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-K 463 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v-k 463 (643)
||-|+|.|..|..+|..++.. | .++.+.|+. ..+ .+..++.- .....++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~g---~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKEDR---TTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHcC---CcccCCHHHHHhhcCC
Confidence 689999999999999988652 5 356667763 111 22222111 12234666666543 5
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 509 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEct~e 509 (643)
||++|= +...+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 889999888764 4568999999865 454444
No 125
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.12 E-value=1.2 Score=47.01 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999998753 4 357777773
No 126
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.03 E-value=3.2 Score=44.35 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.-++-.|.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456788889999999999999999999975 468888877753 24 246666542
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999985
No 127
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.90 E-value=3.3 Score=42.18 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=70.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..|- ..-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~g--~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEYG--VRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhcC--CeecCChHHHHhc--
Confidence 4799999999999999888642 43 125688887641 11222222220 1122467777764
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCccc
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 532 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~ 532 (643)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=+...-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHHH
Confidence 77766 44433 46788888887554 458889999773 3444455442222333456555433
No 128
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.82 E-value=2.8 Score=44.85 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++.=++-.|.+++.+++|++|.+. .|.-+|.||...-. ..| ..+..++++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc-------------
Confidence 4667788899999999999999999999764 67777777753100 012 2455666431
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.+|.+.++. +|++|+..+.++.+++++|+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 368899987 99999999999999999983
No 129
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.53 E-value=0.92 Score=45.81 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc--CCCCCHH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELV 456 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~--~~~~~L~ 456 (643)
.+|++.||+++|+|..|..||+.|+.. |+ .+|+++|.+ .|..+ +|+.+- .+..+- .....+.
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-~~~~dvG~~Ka~~a~ 87 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD-VVEPS---NLNRQQ-YFISQIGMPKVEALK 87 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC-Eeccc---cccccE-eehhhCCChHHHHHH
Confidence 357889999999999999999999763 76 789999997 22222 244321 111110 0112345
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTS 502 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts 502 (643)
+-++.+.|++-|-... ..++++-+...-+ +--+|+ +.=|+.+
T Consensus 88 ~~l~~lnp~v~v~~~~--~~i~~~~~~~~~~--~~DvVI~a~D~~~~ 130 (212)
T PRK08644 88 ENLLEINPFVEIEAHN--EKIDEDNIEELFK--DCDIVVEAFDNAET 130 (212)
T ss_pred HHHHHHCCCCEEEEEe--eecCHHHHHHHHc--CCCEEEECCCCHHH
Confidence 5555666765543222 2355554433321 233555 5455553
No 130
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.45 E-value=2.8 Score=45.81 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC-cccCCCccCCchhchhhccccCCCCCHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G-Lv~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (643)
.+++.+++|+|+|.+|.++|+.++. .| .+++++|.+. .....+.+.|......+.... ...+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~-----~G-------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK-----LG-------AKVILTDEKEEDQLKEALEELGELGIELVLGE----YPEEF 65 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeCC----cchhH
Confidence 3678899999999999999998875 36 4799999863 000000000111000111000 01122
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006498 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 525 (643)
+. ++|++|-..+.. .-.+++..+=. ..-||+ +..|+...+ ...+.|..|||
T Consensus 66 ~~--~~d~vv~~~g~~-~~~~~~~~a~~--~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 66 LE--GVDLVVVSPGVP-LDSPPVVQAHK--KGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hh--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 33 489888766653 44555554422 345665 223332222 23678889998
No 131
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.26 E-value=7.4 Score=42.13 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 006498 361 GTASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422 (643)
Q Consensus 361 GTaaV~LAgll~Alr------------------~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~ 422 (643)
..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++.
T Consensus 102 ~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~ 169 (324)
T COG0111 102 SVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVI 169 (324)
T ss_pred HHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEE
Confidence 344457777888777 567789999999999999999999998653 65 688
Q ss_pred EEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHH
Q 006498 423 LVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMA 486 (643)
Q Consensus 423 lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma 486 (643)
.+|+. ..+. ... ........+|.|.++. .|+|.-.- ..-|.++++-+..|.
T Consensus 170 ~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 170 GYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred EECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 88873 1211 000 0111234679999987 88887542 223688888888884
No 132
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.11 E-value=3.5 Score=44.05 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++.=++-.|.+++.++++|+|. |..|.-+|.+|... |. .+.++.+ +.
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC------
Confidence 45677788888899999999999999999 99999999999752 53 3444422 11
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVV 482 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv 482 (643)
.+|.+.+++ .|++|-.-+.++.++++++
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~i 220 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFV 220 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHc
Confidence 268889987 9999999999999998774
No 133
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.84 E-value=5.3 Score=43.04 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=67.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. ..+..-+|.+..-++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 244100011379999985322 111111244433233321111134567777
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 006498 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPT 501 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt 501 (643)
. .|++|=+.+.+.. .| +++.+.+.+++ +.-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 8999866555321 23 46777788888 499999999997
No 134
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.71 E-value=5.8 Score=42.68 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=77.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc--CCCCCHHHHHhc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 461 (643)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26899999876 2221112444321 11111 011246788887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcccCC--cEEEeeC
Q 006498 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQG--RAIFASG 524 (643)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts-~aEct~edA~~wT~G--raifASG 524 (643)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-++++++= +-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988866665421 12467778888999999999999982 223345555554311 1366666
Q ss_pred C
Q 006498 525 S 525 (643)
Q Consensus 525 S 525 (643)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 4
No 135
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.67 E-value=1.1 Score=45.21 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=62.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKEL 455 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L 455 (643)
.+|++.||+++|+|..|.-||+.|+.. |+ ++|.++|.+ .|..+ +|+.+- -|..++ .....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD-VVELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EEcCc---cccccc-ccChhhCCChHHHHH
Confidence 368889999999999999999999764 75 799999998 23322 344321 121111 112357
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.+.++.+.|++=|=.. ...++++-+...-+. -.=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~~-~DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAY--NERLDAENAEELIAG-YDLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEe--cceeCHHHHHHHHhC-CCEEEEcCCCHH
Confidence 7777777887644322 223555544443221 122444666665
No 136
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.54 E-value=11 Score=40.74 Aligned_cols=141 Identities=14% Similarity=0.151 Sum_probs=82.9
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (643)
|..|.+++|.|+|.|..|..+|+.+.. .|+ +++.+|+.. . . .. ...+. ....+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~-----~G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKG-----FGM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 456899999999999999999999864 264 578888742 1 1 11 11111 12347999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCCCCcc
Q 006498 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFE 531 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~-~w-T~GraifASGSPF~pV~ 531 (643)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|. .++--|+|+ ++ ..|+.-.|.=-=|++=-
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9886 898874422 13688899999885 6677776665 333333333 21 35665444211111100
Q ss_pred cCCeeeCcCCCCcccccchhhH
Q 006498 532 YGDNVFVPGQANNAYIFPGLGL 553 (643)
Q Consensus 532 ~~Gk~~~p~Q~NN~yiFPGigl 553 (643)
..+..+ =+..|+.+-|=+|-
T Consensus 272 ~~~~pL--~~~~nvilTPHia~ 291 (333)
T PRK13243 272 YYNEEL--FSLKNVVLAPHIGS 291 (333)
T ss_pred CCCchh--hcCCCEEECCcCCc
Confidence 011111 23468888888874
No 137
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.43 E-value=1.4 Score=48.02 Aligned_cols=109 Identities=21% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 456 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~----~~~~~~L~ 456 (643)
...-|++++|.|-+|+--|++.+ |+. -++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999998775 442 467788875 333 44444455533 12234699
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHcCC-------CCcEEEecCCCCCCCCCCHHH
Q 006498 457 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLN-------EKPIIFSLSNPTSQSECTAEE 510 (643)
Q Consensus 457 e~V~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~-------erPIIFaLSNPts~aEct~ed 510 (643)
|+|++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||+.++-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 4555678999999996311 112235556777777776654
No 138
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.40 E-value=3.6 Score=44.18 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc
Q 006498 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (643)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k 442 (643)
-+|-.|++.=++..+.+++++++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 456677888889999999999999999764 688888887642211 12 245555442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 443 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358888987 99999999999999999994
No 139
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.34 E-value=2.8 Score=45.23 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|||..|.|||..++.+ |+ ++.++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998753 64 57777763
No 140
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.07 E-value=4.1 Score=43.63 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc
Q 006498 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (643)
Q Consensus 369 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~ 448 (643)
|.+++..+.. -..++++++|+|..|..++..+... .++ +++.++|+. ..+ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4555555442 2347999999999988877766542 233 678888763 222 33333333211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006498 449 ----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (643)
Q Consensus 449 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 510 (643)
.....++.++++. .|++|-++... ..|+.+.++. .--|.++ |+--.+-|+.++-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1224678999985 89998764433 3566665542 1223333 4433456888765
No 141
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.92 E-value=3.7 Score=44.04 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~G-AGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.+.+++.++++|+| .|..|..+|.+|.. .|. .+++++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECCC-------CC-----
Confidence 4566778888889999999999999999 99999999999974 253 46666432 11
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 481 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteev 481 (643)
+|.|+++. .|++|-.-+.+..+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 37788886 899998888877777665
No 142
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.78 E-value=3.6 Score=43.50 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKEL 455 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L 455 (643)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.+ +++. |..+-.+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999999864 76 78999998844332 2442 21111110 111346
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQS 504 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~a 504 (643)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 7777888888766433 2345665555443222234666777766443
No 143
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.77 E-value=1.3 Score=45.63 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=61.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--c-CCCCCH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--H-EPVKEL 455 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~-~~~~~L 455 (643)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+ +|+.+ --|... . .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDT-VSLS---NLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCc-cccc---Ccccc-eeeeHhhCCCcHHHHH
Confidence 467889999999999999999999764 75 7999999982 2222 34421 111111 0 111346
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTS 502 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts 502 (643)
.+.++.+.|++-|-.-. ..++++-+...-+ +--+|+ +.-||.+
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHHH
Confidence 66777777777665433 2455543333211 222444 5566653
No 144
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.70 E-value=2.2 Score=44.23 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc--hhhcc------ccCCCCCHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK--KPWAH------EHEPVKELV 456 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k--~~fA~------~~~~~~~L~ 456 (643)
||.|+|+|..|..+|..+... | .+++++|+..-.. +.+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQA----AEINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHH----HHHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999998752 4 3577888752110 0011000 00000 001124677
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 502 (643)
|+++. +|++| ++... ...+++++.+..+ .+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 67766 33323 3678888887754 44568888887543
No 145
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.57 E-value=7.1 Score=43.39 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCccc-CCCccCCchhchhhccccCCCCCHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV-SSRLESLQHFKKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~-~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (643)
+..+||+|+|.|-.|+++|++|.. .|. .+.++|.+---. ......|......+. .. ....+-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~~~~~~~~~~l~~~gi~~~---~~-~~~~~~~ 75 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSEEELGEVSNELKELGVKLV---LG-ENYLDKL 75 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCCccchHHHHHHHhCCCEEE---eC-CCChHHh
Confidence 456799999999999999999864 363 577888642100 000000111110111 01 1123334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 525 (643)
+ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++++.+.+.|-.|||
T Consensus 76 ~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 76 D--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred c--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC
Confidence 3 478776444443 23455555544 346775 2232 3445445678889998
No 146
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.09 E-value=2.7 Score=44.07 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=70.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE----SLQHFKKPWAHEH---EPVKELVDA 458 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~----~L~~~k~~fA~~~---~~~~~L~e~ 458 (643)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. .+.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999987764 254 2 79999986 22210 011111 010000 112355 45
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc---EEE
Q 006498 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR---AIF 521 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Gr---aif 521 (643)
++. .|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 8888844333211 2347888999999999999999998 33444555555 32 478
Q ss_pred eeCC
Q 006498 522 ASGS 525 (643)
Q Consensus 522 ASGS 525 (643)
++|.
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 8874
No 147
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.01 E-value=5.4 Score=42.69 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc
Q 006498 364 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (643)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k 442 (643)
-+|-.|++.=++-.+.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 45667778888889999999999999976 467888877753 242 46666643
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 443 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|...|.++.+|.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788886 99999999999999999986
No 148
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.86 E-value=3.8 Score=43.82 Aligned_cols=102 Identities=17% Similarity=0.346 Sum_probs=65.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc--ccC-CCCCHHHHHhc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHE-PVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~--~~~-~~~~L~e~V~~ 461 (643)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. ... ...+ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998864 255 3689999974111111111243322 2221 100 0133 466766
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 006498 462 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 462 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt 501 (643)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 89888666653 3 23 57888888999999999999997
No 149
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=82.70 E-value=6.3 Score=38.73 Aligned_cols=83 Identities=16% Similarity=0.329 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
--+|-.|++.-++..+.++++.+++++|.+. -|.-+|.||.. .|. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC--------------
Confidence 3567888899999999999999999999985 88888888764 232 34555553
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.++. +|++|-..++++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777875 99999999999999998885
No 150
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=82.52 E-value=7.2 Score=42.12 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=72.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999988764 254100111279999986311 111111244333233221111135667777
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 006498 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 515 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~e-rPIIFaLSNPts~aEct~edA~~wT 515 (643)
. .|++|=+.+.+.. .| +++++.+++++. .-||+--|||. ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 8988866555311 22 467778888987 99999999997 34444455554
No 151
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.28 E-value=13 Score=40.03 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 006498 361 GTASVVLAGLISAMKF-------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (643)
Q Consensus 361 GTaaV~LAgll~Alr~-------------------~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i 421 (643)
.+|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+.. .|+ ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EE
Confidence 4444567777766553 2346889999999999999999998864 253 68
Q ss_pred EEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC-C---CCCCCHHHHHHHHcCCCCcEEEec
Q 006498 422 WLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG-Q---GRTFTKEVVEAMASLNEKPIIFSL 497 (643)
Q Consensus 422 ~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~-~---~g~Fteevv~~Ma~~~erPIIFaL 497 (643)
+.+|+.. +. .. .+.+ ...+|.|+++. .|+++=.-- . -+.|.++++..|. +..++.-.
T Consensus 173 ~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~ 233 (330)
T PRK12480 173 TAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNA 233 (330)
T ss_pred EEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEc
Confidence 8888641 10 11 1111 12478888886 787663321 1 1466777777775 55666655
Q ss_pred CC
Q 006498 498 SN 499 (643)
Q Consensus 498 SN 499 (643)
|.
T Consensus 234 aR 235 (330)
T PRK12480 234 AR 235 (330)
T ss_pred CC
Confidence 54
No 152
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.22 E-value=6.3 Score=42.06 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-+|++.=++-.+.+|++++++++|-+. .|.-+|.||.. .|. .+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4667888889999999999999999999764 68888888753 242 46666653
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999986
No 153
>PRK06436 glycerate dehydrogenase; Provisional
Probab=82.14 E-value=19 Score=38.58 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (643)
+..|.++++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998664 3 264 6888887521 0101 0 01247889
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
+++. .|+++=.-. .-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 888874321 23688999999996 677888777643
No 154
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.13 E-value=1.3 Score=44.11 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=49.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--c----CCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--H----EPV 452 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~----~~~ 452 (643)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. . ...
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 457889999999999999999999864 76 7899999983 2222 24321 12221 0 111
Q ss_pred CCHHHHHhccCCcEEEE
Q 006498 453 KELVDAVNAIKPTILIG 469 (643)
Q Consensus 453 ~~L~e~V~~vkPtvLIG 469 (643)
..+.+.++.+.|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24667777778887553
No 155
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=81.60 E-value=1.6 Score=49.15 Aligned_cols=124 Identities=16% Similarity=0.343 Sum_probs=81.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCC-----CCCH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKEL 455 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~-----~~~L 455 (643)
+..||+|+||||.. -.+++...+.+...++ ...|||+|-+ .+|.+.....-+.+.++ ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 6778877777666665 3789999975 55533111122233322 122 2588
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 006498 456 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 501 (643)
.||++. +|-+|=. .++||.|. -|+++.|-+.++.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999887 6555421 34445443 38899999999999999999999
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 006498 502 SQSECTAEEAYTWSQG-RAI 520 (643)
Q Consensus 502 s~aEct~edA~~wT~G-rai 520 (643)
+++|- -+++|+.. +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555554 444
No 156
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.38 E-value=2 Score=44.30 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999864 75 799999998
No 157
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.20 E-value=5.9 Score=43.35 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=59.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
+++.+++|.|+|..|.++|+.+.+ .|. ++++.|.+-.-.....+.|......+... ..-.++..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~~~~~~~~~~~l~~~g~~~~~~----~~~~~~~~ 66 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGKPFSENPEAQELLEEGIKVICG----SHPLELLD 66 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCCCccchhHHHHHHhcCCEEEeC----CCCHHHhc
Confidence 567899999999999999888764 363 68888864110000000011110011100 11112222
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 525 (643)
. .+|++|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 67 ~-~~d~vV~s~gi~-~~~~~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~I~VTGT 116 (447)
T PRK02472 67 E-DFDLMVKNPGIP-YTNPMVEKALE--KGIPII-------TEVEL----AYLISEAPIIGITGS 116 (447)
T ss_pred C-cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHhcCCCEEEEeCC
Confidence 1 378888666555 23445544443 345665 23332 334445678888998
No 158
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.98 E-value=6.4 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=21.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
-...||.|+|||+-|+.+|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999975
No 159
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.90 E-value=3.9 Score=42.29 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4556666654555667899999999888888777653 24 368888863
No 160
>PRK07574 formate dehydrogenase; Provisional
Probab=80.90 E-value=9.9 Score=42.17 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (643)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+...- . + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHH
Confidence 3468999999999999999999998642 64 57888875321 0 0 0 0011 0111357999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeC
Q 006498 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASG 524 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASG 524 (643)
+++. .|+++=.-- .-+.|+++++..|. +..++.=.|. .++.-|+|+. ...|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9987 898874322 13689999999996 5677776665 4555554442 23566655544
No 161
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.72 E-value=9.3 Score=39.73 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999988653 5 368888874
No 162
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=80.71 E-value=7.1 Score=42.09 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
-.-+|-+|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 34567778888889999999999999999764 67777777753 24 246777653
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 163
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.69 E-value=3.4 Score=46.67 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4778888888889999999999999888777777653 352 57777763
No 164
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=80.68 E-value=3.9 Score=42.15 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=56.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCC-CccCCch--h-chhhccccCCCCCHHHHHh
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--F-KKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~-R~~~L~~--~-k~~fA~~~~~~~~L~e~V~ 460 (643)
||.|+|+|+.|..+|..+... | .+++++++ +--.+. +...+.- . ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988652 4 46888887 210000 0000100 0 00000 0011235556554
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 502 (643)
. +|++|=+.-. ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 3 6766533222 3478999988763 45668888999863
No 165
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=80.67 E-value=42 Score=34.99 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998753 5 478888864
No 166
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=80.60 E-value=15 Score=39.34 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 006498 361 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~----------------g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lv 424 (643)
..|--+++-+|+..|-. +..+.++++.|+|-|..|..||+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666654422 3468899999999999999999999743 65 57777
Q ss_pred eCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006498 425 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 425 D~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 500 (643)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.+
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 11111 11 123579999987 888873321 12567778888885 555666555
Q ss_pred CCCCCCCHHHHh--cccCCcEEEeeCCCCCCcccCCeeeCc-CCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHc
Q 006498 501 TSQSECTAEEAY--TWSQGRAIFASGSPFDPFEYGDNVFVP-GQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAG 577 (643)
Q Consensus 501 ts~aEct~edA~--~wT~GraifASGSPF~pV~~~Gk~~~p-~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~ 577 (643)
+.++--|+|+ ....|+.-.|.--=|++--.... .| =+..|+++-|=+|- .+. .+.|...+++-+-.
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~--~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~ 295 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE--SPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQ 295 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC--ChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHH
Confidence 4666666655 23466655443322321111100 11 14468888887763 221 23455555555544
Q ss_pred cc
Q 006498 578 QV 579 (643)
Q Consensus 578 ~v 579 (643)
+.
T Consensus 296 ~~ 297 (312)
T PRK15469 296 LE 297 (312)
T ss_pred HH
Confidence 43
No 167
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.57 E-value=1.5 Score=43.81 Aligned_cols=77 Identities=16% Similarity=0.322 Sum_probs=53.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc----CCCCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKE 454 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~----~~~~~ 454 (643)
+.|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|.... .....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 468889999999999999999999764 76 7999999983 2222 2432 1222211 11245
Q ss_pred HHHHHhccCCcEEEEccC
Q 006498 455 LVDAVNAIKPTILIGTSG 472 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~ 472 (643)
+.+.++.+.|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 788899999998775443
No 168
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.21 E-value=5.1 Score=41.08 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh-----hccccCCCCCHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-----WAHEHEPVKELVDAV 459 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~-----fA~~~~~~~~L~e~V 459 (643)
||.|+|+|+.|..+|..+.+. | .+++++|+++= +.+.+...... +........++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGA----HLDALNENGLRLEDGEITVPVLAADDPAEL- 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChH----HHHHHHHcCCcccCCceeecccCCCChhHc-
Confidence 799999999999999888652 4 46888887421 10111110000 00000112345543
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPTS 502 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPts 502 (643)
+ ++|++| ++... .-++++++.++..- +.-+|+.+.|.-.
T Consensus 65 ~--~~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 G--PQDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred C--CCCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 478776 44433 34799999998643 3446777999753
No 169
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=80.21 E-value=0.82 Score=56.16 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCcceeeecCCCCcHH------------HHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCC
Q 006498 314 LHEFMTAVKQNYGERILIQFEDFANHNAF------------DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSL 381 (643)
Q Consensus 314 idefv~av~~~fGp~~lIqfEDf~~~nAf------------~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L 381 (643)
..|.++++..+|-| +=||.-|..-.+. ..-+||..++.+|..+. -.+|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~------------------Q~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTF------------------QQKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHH------------------HHHH
Confidence 58999999999977 2245444322221 12345544444443221 1457
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++.||+++|||..|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 789999999999999999999875 55210 13789999987
No 170
>PRK05442 malate dehydrogenase; Provisional
Probab=80.16 E-value=12 Score=40.63 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=70.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc--cCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++-.-+|.+...++-+...-..+..|.++.
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877643 33100001389999985311 1111112444333433221112356677876
Q ss_pred cCCcEEEEccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 006498 462 IKPTILIGTSGQ---GRT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 515 (643)
Q Consensus 462 vkPtvLIG~S~~---~g~-----------Fteevv~~Ma~~~-erPIIFaLSNPts~aEct~edA~~wT 515 (643)
.|++|=+.+. +|- .=+++++.+++++ ...||+-.|||. ....--+++++
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 8988855554 331 1245677777866 699999999997 34444444544
No 171
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.12 E-value=11 Score=38.89 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988642 53 68888854
No 172
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.06 E-value=2.5 Score=39.22 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=54.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc---c-CCCCCHHHHHh
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---H-EPVKELVDAVN 460 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~---~-~~~~~L~e~V~ 460 (643)
||+++|+|.-|..+|+.|+.. |+ ++|.++|.+-+ ..+ +|..+ .|... . .....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~~---nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-ELS---NLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Ccc---hhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 75 79999998833 221 24322 22211 1 11235667777
Q ss_pred ccCCcEEEEccCCCCCCCHHH-HHHHHcCCCCcEEEecCCC
Q 006498 461 AIKPTILIGTSGQGRTFTKEV-VEAMASLNEKPIIFSLSNP 500 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteev-v~~Ma~~~erPIIFaLSNP 500 (643)
...|.+=|-.-.. .++++. .+.+ .+-.||+.-+..
T Consensus 64 ~~~p~v~i~~~~~--~~~~~~~~~~~---~~~diVi~~~d~ 99 (143)
T cd01483 64 ELNPGVNVTAVPE--GISEDNLDDFL---DGVDLVIDAIDN 99 (143)
T ss_pred HHCCCcEEEEEee--ecChhhHHHHh---cCCCEEEECCCC
Confidence 7777765543322 234332 2222 244566654443
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.05 E-value=4.8 Score=45.48 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCcceeeecCCCCcHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHh--------CCCCCCc
Q 006498 316 EFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQ 384 (643)
Q Consensus 316 efv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~L~d~ 384 (643)
+.+..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.+....+-++..++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 54 44555677777889999973 444 458888888888888888777644 1224457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887764
No 174
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=80.04 E-value=16 Score=38.99 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=87.4
Q ss_pred CCCceeccC---CcchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 006498 350 TTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (643)
Q Consensus 350 ~~~~~FNDD---iQGTaaV~LAgll~Alr~~------------------------g~~L~d~riv~~GAGsAG~GIA~li 402 (643)
..+.+.|-- -..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 455555531 1345566677777766532 2468999999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 006498 403 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 478 (643)
Q Consensus 403 ~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 478 (643)
. ++ |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~-~f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred h-hc----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 5 32 64 6888888531 10 0 011 12479999987 8888632 22337899
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 006498 479 KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 520 (643)
Q Consensus 479 eevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w--T~Grai 520 (643)
++.++.|. +..++.=.|. .++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999996 6667775554 55655555432 357654
No 175
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.00 E-value=7.9 Score=41.54 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+=.-+|-+|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~------------ 192 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK------------ 192 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 34567888899999999999999999999976 468888887753 243 35556543
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 193 ------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 ------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1357888887 99999999999999999996
No 176
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.70 E-value=29 Score=35.46 Aligned_cols=95 Identities=12% Similarity=0.202 Sum_probs=53.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 464 (643)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +......+.+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988642 532 2456666642 1 11222222221 01123567777765 5
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 465 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
|++| ++..+.. .+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6655 3333322 366776652 34556777776665
No 177
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.64 E-value=7.9 Score=41.44 Aligned_cols=85 Identities=18% Similarity=0.344 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.-++-.|.+|+.+++|++|.+ ..|.-+|.||... ..|. .+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 466778888899999999999999999975 4688888877531 0132 35555542
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1468888987 99999999999999999986
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.43 E-value=2.7 Score=47.38 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=63.1
Q ss_pred eeeecCCCCcHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHhCC--------CCCCceEEEeCcchHHHHHH
Q 006498 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFLGG--------SLADQRFLFLGAGEAGTGIA 399 (643)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~L~d~riv~~GAGsAG~GIA 399 (643)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66776777777889999973 444 45888888888888899988875322 23456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 400 ELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 400 ~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88864 364 56666654
No 179
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.40 E-value=6.2 Score=42.30 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=76.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc--CCCCCHHHHHhc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 461 (643)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887753 255 4689999974211111111233322 333211 11135554 665
Q ss_pred cCCcEEEEccCCCCC--CCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 006498 462 IKPTILIGTSGQGRT--FTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 525 (643)
Q Consensus 462 vkPtvLIG~S~~~g~--Fte------------evv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGS 525 (643)
.|++|=+.+.+.. -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecCc
Confidence 8988755554311 233 67788889999999999999983 4555555553 1134777765
Q ss_pred C
Q 006498 526 P 526 (643)
Q Consensus 526 P 526 (643)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 180
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.25 E-value=9 Score=41.23 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.-++..|.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC--------------
Confidence 4667788889999999999999999999764 67777777753 24 246666653
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ----------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ----------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999996
No 181
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.21 E-value=8.8 Score=41.07 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+=.-+|-+|++.=++-.|.+++.+++|++|-+. .|--+|.||.. .|. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 445677888899999999999999999999764 67888877753 242 35555553 1
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
++|.+.+++ +|++|-..|.++.||+++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888887 99999999999999999986
No 182
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.17 E-value=6.1 Score=45.07 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=53.9
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhccc------CCcEEEeeCCCC
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QSEC-----TAEEAYTWS------QGRAIFASGSPF 527 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts---~aEc-----t~edA~~wT------~GraifASGSPF 527 (643)
.+|+.+|.+.+. .++.+-+.+-.++-+|=+-+-.-||.. ..|+ |.++++++. =|+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~--- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK--- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---
Confidence 478888874332 233333333333334446777777643 2222 344444432 133222223
Q ss_pred CCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 006498 528 DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 572 (643)
Q Consensus 528 ~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 572 (643)
..||-.+|-.++|.+.-+..+...--++.+-+..+.
T Consensus 187 ---------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ---------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 246789999999988888777766666666666554
No 183
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=78.95 E-value=1.9 Score=50.70 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 76 79999998733
No 184
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.94 E-value=6 Score=38.69 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh---------hcccc
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP---------WAHEH 449 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~---------fA~~~ 449 (643)
++++.+++|.|| |..|..+++.++ + .|. +++++++.. ++ ++..... +.-+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~D~ 62 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRNE----EA---AERVAAEILAGGRAIAVAADV 62 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCCH----HH---HHHHHHHHhcCCeEEEEECCC
Confidence 467789999997 445555555544 3 353 588888862 11 1111111 11111
Q ss_pred CCCCCHHHHHhcc-----CCcEEEEccCC
Q 006498 450 EPVKELVDAVNAI-----KPTILIGTSGQ 473 (643)
Q Consensus 450 ~~~~~L~e~V~~v-----kPtvLIG~S~~ 473 (643)
.+..++..+++.+ ++|++|=.++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 63 SDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 2223455555554 78999988775
No 185
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.56 E-value=3.2 Score=39.37 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|||+|+|.||+..|..+.. .| .++.++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEecc
Confidence 68999999999999999972 23 478888664
No 186
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=78.39 E-value=12 Score=40.29 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 458 (643)
.-.++.|+|+|.-|-.-++.+... .. -++|+++|+. .++ .+.+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999877655554331 11 3789988874 222 233333332211 224689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006498 459 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (643)
Q Consensus 459 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 510 (643)
++. .|++|-++ +....|..+.++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 985 89998654 333477777764 556788887544 368999864
No 187
>PRK07680 late competence protein ComER; Validated
Probab=78.17 E-value=5.3 Score=41.20 Aligned_cols=98 Identities=13% Similarity=0.254 Sum_probs=59.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 464 (643)
+|.|+|+|..|..+|..+... |.- ...+++++|++ .. ........|. ......+..|+++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999888642 420 12467877764 11 1222221120 01112467777765 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006498 465 TILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (643)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 502 (643)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8775 33333 4478888888754 34568889998763
No 188
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.16 E-value=12 Score=39.35 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=56.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-cCCCCCHHHHHhcc-
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 462 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v- 462 (643)
||.|+|.|..|..+|..|... | .+++++|+. ..+ .+. ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~----~~~---~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRN----PEA---VEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECC----HHH---HHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998652 5 357777775 111 112 2111 11235677877765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNP 500 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 500 (643)
+||++|=+-. .+...+++++.+.. ..+..+|+-+|+-
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~ 96 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNS 96 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 3666553322 33456677665543 3456788888763
No 189
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.04 E-value=22 Score=36.37 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeC
Q 006498 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (643)
Q Consensus 368 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~ 426 (643)
+..+.|++..+. ..+.+++|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999987776554443 22 364 56887764
No 190
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.93 E-value=10 Score=40.65 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-+|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 34667788888889999999999999999764 67777777753 242 45566542
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.++. +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999996
No 191
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.76 E-value=51 Score=35.35 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCCceeccC---CcchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHHH
Q 006498 350 TTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 402 (643)
Q Consensus 350 ~~~~~FNDD---iQGTaaV~LAgll~Alr~~------------------------g~~L~d~riv~~GAGsAG~GIA~li 402 (643)
..+.+.|-- -+.+|=-+++-+|+..|-. +..|.++++.|+|.|..|..||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 355555532 1345666777777765531 2358899999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 006498 403 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 478 (643)
Q Consensus 403 ~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 478 (643)
. ++ |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~-~f----gm-------~V~~~~~~~-----~~~---~-----~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 E-AF----GM-------RVLIGQLPG-----RPA---R-----P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred h-hC----CC-------EEEEECCCC-----Ccc---c-----c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 5 32 64 577777652 101 0 0 12379999987 8988732 22347999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh--cccCCcEEEeeCCCCC--CcccCCeeeCcCCCCcccccchhhHH
Q 006498 479 KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGSPFD--PFEYGDNVFVPGQANNAYIFPGLGLG 554 (643)
Q Consensus 479 eevv~~Ma~~~erPIIFaLSNPts~aEct~edA~--~wT~GraifASGSPF~--pV~~~Gk~~~p~Q~NN~yiFPGiglG 554 (643)
++.+..|. +..++.=.|. .++--|+|+ ...+|+.-.|.=-=|. |.. .+..+.--+..|+.+-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999996 6667775554 455555444 2236766544322221 111 1111110035689999988732
Q ss_pred HHHhCCcccCHHHHHHHHHHHHcccC
Q 006498 555 LIMSGAIRVHDDMLLAAAEALAGQVT 580 (643)
Q Consensus 555 ~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (643)
. ..-.+.|...+++.|.....
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHHc
Confidence 2 22234455555555555543
No 192
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.57 E-value=39 Score=35.57 Aligned_cols=45 Identities=24% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~ 203 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS 203 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC
Confidence 455554433 36889999999987776654433 2 353 578877763
No 193
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.24 E-value=2.9 Score=45.42 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457889999999999999999998764 76 789999998
No 194
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.22 E-value=1.4 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALE 405 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~ 405 (643)
.+..+|+|+|||-||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3456899999999999999999875
No 195
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=77.18 E-value=13 Score=39.50 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=59.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G-~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (643)
.||.|+|+|..|..|+.-|... | ++ ..+|+++|+. .+......+.|--.. ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~~--~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVVT--TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCcc--cCcHHHHHhh-
Confidence 5899999999999888887653 5 32 3678877764 112223444442211 3455566654
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 516 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~ 516 (643)
.|+++ ++-.| ..=++|++.+....+..+|..+.=.+ +.++.-+|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHcC
Confidence 66665 44444 23345555555444555555554333 4455555543
No 196
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.12 E-value=31 Score=35.81 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (643)
..||.|+|+|.-|..||+.++.. |.- ...+++++|+. .. +.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~~--~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----NE--TRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----CH--HHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 45899999999999999988642 410 12457766642 10 11222222221 1122456677764
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 501 (643)
.|++| ++-.+ ...+++++.+... .+..+|..+++-+
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66554 33333 2355666666543 3456777776655
No 197
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=77.01 E-value=15 Score=39.11 Aligned_cols=124 Identities=22% Similarity=0.312 Sum_probs=71.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC---cccCCCccCCchhchhhcccc--CCCCCHHHH
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG---LIVSSRLESLQHFKKPWAHEH--EPVKELVDA 458 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G---Lv~~~R~~~L~~~k~~fA~~~--~~~~~L~e~ 458 (643)
||.|+|| |..|..+|..++. .|+ ...++++|++- .+...+.+ +.+....+.... .-..+. +.
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~~l~~~~~d-l~d~~~~~~~~~~i~~~~d~-~~ 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLEKLKGLRLD-IYDALAAAGIDAEIKISSDL-SD 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccccccccccch-hhhchhccCCCcEEEECCCH-HH
Confidence 7999998 9999999998865 254 24799999852 11111111 211100000000 001243 45
Q ss_pred HhccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 006498 459 VNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifA 522 (643)
++. .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||. .+..-.+++++. .+-+|+
T Consensus 70 l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~~viG 144 (309)
T cd05294 70 VAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKNRVFG 144 (309)
T ss_pred hCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHHHEee
Confidence 766 88887665543 1 23567788888899999999999997 222233444331 233666
Q ss_pred eCC
Q 006498 523 SGS 525 (643)
Q Consensus 523 SGS 525 (643)
+|.
T Consensus 145 ~gt 147 (309)
T cd05294 145 LGT 147 (309)
T ss_pred ccc
Confidence 664
No 198
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.97 E-value=11 Score=42.14 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=50.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (643)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++ .. ...+.+.....++... ..-.+-+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~--~~-~~~~~l~~~gi~~~~~----~~~~~~~ 72 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN--ET-ARHKLIEVTGVADIST----AEASDQL 72 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC--hH-HHHHHHHhcCcEEEeC----CCchhHh
Confidence 3566899999999999999999864 353 58888864 11 1100011111111111 0111223
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 494 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 494 (643)
+ ++|.+|=.++++ --.+++.++.. ...||+
T Consensus 73 ~--~~d~vV~Spgi~-~~~p~~~~a~~--~gi~v~ 102 (473)
T PRK00141 73 D--SFSLVVTSPGWR-PDSPLLVDAQS--QGLEVI 102 (473)
T ss_pred c--CCCEEEeCCCCC-CCCHHHHHHHH--CCCcee
Confidence 3 478888667766 35566665543 445554
No 199
>PRK06153 hypothetical protein; Provisional
Probab=76.93 E-value=3.2 Score=46.30 Aligned_cols=162 Identities=22% Similarity=0.310 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcceeeecCCCCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEE
Q 006498 308 QEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFL 387 (643)
Q Consensus 308 eeY~~fidefv~av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv 387 (643)
..|-.+-++++.-+.---||-..|..+ .++.-|+.... +++=.+||= +=|++.= +| +.+ .-.+|++.||+
T Consensus 111 ~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y--~dt~s~R-~~-i~~---~q~kL~~~~Va 180 (393)
T PRK06153 111 GGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNY--PDTASSR-AG-IGA---LSAKLEGQRIA 180 (393)
T ss_pred CCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceeh--hhhhccc-cC-hHH---HHHHHhhCcEE
Confidence 467777777777666655564444333 23333432111 111223321 0011100 01 111 12567899999
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc-----CCCCCHHHHHhcc
Q 006498 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-----EPVKELVDAVNAI 462 (643)
Q Consensus 388 ~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~-----~~~~~L~e~V~~v 462 (643)
|+|+|..|.-|+++|+.. |+ ++|.++|.+ .|..+ +|+..---|-.+. ....-+.+.++..
T Consensus 181 IVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i 245 (393)
T PRK06153 181 IIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVDYFKSRYSNM 245 (393)
T ss_pred EEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHHHHHHHHHHh
Confidence 999999999999999864 75 799999998 22222 3433211111111 1123466777777
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt 501 (643)
.|.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 246 n~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 246 RRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred CCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 7754 3344467888877663 445666 444444
No 200
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.90 E-value=11 Score=40.63 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+-.-+|-+|++.=++-.|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.+|.++
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 344667788888889999999999999999764 67777777753 2211 01245555443
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 201
>PLN03139 formate dehydrogenase; Provisional
Probab=76.82 E-value=22 Score=39.60 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=84.7
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (643)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHhhcCc---eecCCHHH
Confidence 4579999999999999999999999642 64 5777887532 0 01 0110001 12347999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEeeCCCCCCcc
Q 006498 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAIFASGSPFDPFE 531 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~-w-T~GraifASGSPF~pV~ 531 (643)
+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|. .++--|+|+. . ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888773321 12689999999996 5567765554 4555554442 2 35766666554332211
Q ss_pred cCCeeeCc-CCCCcccccchhh
Q 006498 532 YGDNVFVP-GQANNAYIFPGLG 552 (643)
Q Consensus 532 ~~Gk~~~p-~Q~NN~yiFPGig 552 (643)
.. ...| -+..|..+-|=++
T Consensus 323 lp--~d~pL~~~pNvilTPHia 342 (386)
T PLN03139 323 AP--KDHPWRYMPNHAMTPHIS 342 (386)
T ss_pred CC--CCChhhcCCCeEEccccc
Confidence 10 0010 1235788888776
No 202
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=76.62 E-value=13 Score=41.24 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc--
Q 006498 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-- 447 (643)
Q Consensus 370 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~-- 447 (643)
+..++.-....|++.|++|+|-+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+.-+.+..
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 445566666778889999999988899999998764 37632 212111 1111 111111111111
Q ss_pred ---ccCCCCCHHHHHhccCCcEEEEcc
Q 006498 448 ---EHEPVKELVDAVNAIKPTILIGTS 471 (643)
Q Consensus 448 ---~~~~~~~L~e~V~~vkPtvLIG~S 471 (643)
+..+...+.+.|+..|||.|||-|
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112233568899999999999977
No 203
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.60 E-value=6.6 Score=43.58 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=30.7
Q ss_pred hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 377 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 377 ~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|..++.++++|+|+|.+|+.+|+.+.+ .|. ++.++|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~-----~G~-------~V~~~d~~ 48 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE-----LGA-------RVTVVDDG 48 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4556778899999999999999888753 363 58888864
No 204
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=76.56 E-value=1.2 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
+...+.||||+|||.||++.|.-+.+
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 205
>PRK06141 ornithine cyclodeaminase; Validated
Probab=76.55 E-value=17 Score=38.74 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc---cCCCCCHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 458 (643)
...+++|+|+|..|..++..+... .+ -++|+++|+. .++ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876542 23 2678888764 222 23333333221 1123678899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006498 459 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 510 (643)
++. .|++|-+++.. .+|+.+.++ +.-.|-+. |.+..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 975 99998766543 235555442 22244444 4455677888753
No 206
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=76.16 E-value=44 Score=38.39 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=110.8
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 006498 350 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (643)
Q Consensus 350 ~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~ 408 (643)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+..
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 161 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKA---- 161 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 3455555321 23555567777777653 2456889999999999999999999864
Q ss_pred hcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHH
Q 006498 409 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEA 484 (643)
Q Consensus 409 ~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~ 484 (643)
.|+ +++.+|+.. ++ +.... + .-...+|.|+++. .|+++=.-. .-+.|+++.+..
T Consensus 162 -fG~-------~V~~~d~~~----~~-~~~~~----~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 162 -FGM-------KVIAYDPYI----SP-ERAAQ----L---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred -CCC-------EEEEECCCC----Ch-hHHHh----c---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 264 688888742 11 10000 0 0111268898886 788764322 236889999988
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccC
Q 006498 485 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 564 (643)
Q Consensus 485 Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 564 (643)
|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++--.....+ =+..|+.+-|=+|-...- -.
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~pL--~~~~nvilTPHia~~t~e-----~~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSPL--FELPNVVVTPHLGASTAE-----AQ 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCchh--hcCCCeeEcCccccchHH-----HH
Confidence 86 667777776644333333334443 5665433211111000001111 134589999988743322 23
Q ss_pred HHHHHHHHHHHHcccCcc
Q 006498 565 DDMLLAAAEALAGQVTQE 582 (643)
Q Consensus 565 d~M~laAA~aLA~~v~~~ 582 (643)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455566666666665544
No 207
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.96 E-value=9.5 Score=38.47 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~ee-Ar~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (643)
.+++||.|+|.|..+. +|.-++..|.. ++..+- +..-+-+.|..-+++.- . +-..+...|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~-a-nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAI-A-NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHH-h-ccccHHHHHHHH------HHHcC
Confidence 4569999999998775 77777766642 110000 11122232222222211 0 112334455542 32112
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHH
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMA 486 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma 486 (643)
-+-|++|+.|..|. |+++++.+.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 35799999999887 899998874
No 208
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.86 E-value=16 Score=40.13 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006498 361 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~--------------------g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~ 420 (643)
-||-.+++-+|.++|-. |..+.++|+.|+|+|+.|.-||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57788888888888743 3468899999999999999999999653 2 12
Q ss_pred EEEEeCCCcccCCCcc-CCchhchhhccccCCCCCHHHHHhccCCcEEEEccCC----CCCCCHHHHHHHH
Q 006498 421 IWLVDSKGLIVSSRLE-SLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ----GRTFTKEVVEAMA 486 (643)
Q Consensus 421 i~lvD~~GLv~~~R~~-~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~----~g~Fteevv~~Ma 486 (643)
|. +.+|.. .....+..+|. .-++.|...+ .|+++=..-- -++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 33 344421 12233344443 3467777765 8888744321 2588999999885
No 209
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.65 E-value=21 Score=40.94 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=29.0
Q ss_pred CcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHH
Q 006498 538 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (643)
Q Consensus 538 ~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 573 (643)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999988888888777778777776654
No 210
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.49 E-value=14 Score=39.87 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.+.+|+++++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 3567788888889999999999999999764 67777777753 23210 0124444443
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999986
No 211
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.40 E-value=7.5 Score=40.80 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=55.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC-
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK- 463 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk- 463 (643)
||-|+|.|..|..+|+.+... |. +++++|++ .++ .+..+.. ......++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~----~~~---~~~~~~~---g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN----QEA---VDVAGKL---GITARHSLEELVSKLEA 59 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC----HHH---HHHHHHC---CCeecCCHHHHHHhCCC
Confidence 689999999999999988652 43 57777764 121 2221110 1122357778777643
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (643)
++++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 60 advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 60 PRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566652 22233356677666543 34567888887633
No 212
>PRK06932 glycerate dehydrogenase; Provisional
Probab=74.29 E-value=29 Score=37.22 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (643)
..|.++++.|+|-|..|..+|+++.. -|+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 46889999999999999999988743 265 4666665310 000 0 113479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCC--Cc
Q 006498 459 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--PF 530 (643)
Q Consensus 459 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASGSPF~--pV 530 (643)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8988832 2234799999999996 6667776655 4455554442 235665544332221 11
Q ss_pred ccCCeeeC-cCCCCcccccchhhH
Q 006498 531 EYGDNVFV-PGQANNAYIFPGLGL 553 (643)
Q Consensus 531 ~~~Gk~~~-p~Q~NN~yiFPGigl 553 (643)
.-+.--.. --+..|+.+-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11110000 013568888887763
No 213
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.02 E-value=10 Score=40.24 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=73.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccC-CCCCHHHHHhccC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~-~~~~L~e~V~~vk 463 (643)
||.|+|+|..|..+|-.++. .|+ ...++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988764 254 368999997410011000012211 12211100 01344 45665
Q ss_pred CcEEEEccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeCCCC
Q 006498 464 PTILIGTSGQGRTF--------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 527 (643)
Q Consensus 464 PtvLIG~S~~~g~F--------------teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifASGSPF 527 (643)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 77777554443211 136778888889999999999996 555555555541 23377777544
No 214
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.39 E-value=12 Score=39.51 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh-chhhcc-ccCCCCCHHH
Q 006498 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-KKPWAH-EHEPVKELVD 457 (643)
Q Consensus 381 L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~-k~~fA~-~~~~~~~L~e 457 (643)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|++.--.....+.+... +..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 7788888877764 25 36888887521000000001000 001111 2222346778
Q ss_pred HHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 006498 458 AVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 498 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 498 (643)
+++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999987764321 1345667776554 457888654
No 215
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.33 E-value=17 Score=39.03 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.+.+++.+++|++|-+. .|.-+|.||.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788888899999999999999999764 67777777753 232 35555432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788886 99999999999999999996
No 216
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.32 E-value=16 Score=39.21 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc
Q 006498 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (643)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~ 439 (643)
+=.-+|-.|++.=++-.|.+|++.++|++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 345678888899999999999999999999764 68888887753 242 35555543
Q ss_pred hhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1256677776 99999999999999999986
No 217
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.28 E-value=17 Score=38.99 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-.|++.=++-.|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 3467778888889999999999999999976 468888877753 242 35555443
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
..+|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999986
No 218
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=73.22 E-value=93 Score=35.82 Aligned_cols=196 Identities=20% Similarity=0.172 Sum_probs=108.9
Q ss_pred CCCceeccC---CcchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHH
Q 006498 350 TTHLVFNDD---IQGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 408 (643)
Q Consensus 350 ~~~~~FNDD---iQGTaaV~LAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~ 408 (643)
..+++.|-- -+.+|=-+++.+|+..|- .|..|.++++.|+|-|..|..+|+.+..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA---- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 455555532 124555566777766552 2557899999999999999999999853
Q ss_pred hcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCCHHHHHH
Q 006498 409 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFTKEVVEA 484 (643)
Q Consensus 409 ~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Fteevv~~ 484 (643)
.|+ +++.+|+.. .... .. .+ ......+|.|+++. .|+++=. ...-+.|+++.+..
T Consensus 160 -fG~-------~V~~~d~~~--~~~~---~~----~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 160 -FGM-------KVLAYDPYI--SPER---AE----QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred -CCC-------EEEEECCCC--ChhH---HH----hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 264 688888741 1110 00 00 00112478898876 7877622 12236888888888
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccC
Q 006498 485 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 564 (643)
Q Consensus 485 Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 564 (643)
|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++=-.... .--+..|+.+-|=+|-....+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 566777666644333333334444 56654442111110000011 112456888889877433322 2
Q ss_pred HHHHHHHHHHHHcccCcc
Q 006498 565 DDMLLAAAEALAGQVTQE 582 (643)
Q Consensus 565 d~M~laAA~aLA~~v~~~ 582 (643)
..|...+++.+-+....+
T Consensus 287 ~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 287 ENVATQVAEQVLDALKGL 304 (525)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344455555555555433
No 219
>PRK06270 homoserine dehydrogenase; Provisional
Probab=72.95 E-value=29 Score=37.60 Aligned_cols=105 Identities=16% Similarity=0.244 Sum_probs=64.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccC---------C
Q 006498 384 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------P 451 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~---m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~---------~ 451 (643)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+.-++... ..|+.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999998653 22222331 122456799999887653122211 22222211 1
Q ss_pred CCCHHHHHhccCCcEEEEccCC---CCCCCHHHH-HHHHcCCCCcEEE
Q 006498 452 VKELVDAVNAIKPTILIGTSGQ---GRTFTKEVV-EAMASLNEKPIIF 495 (643)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S~~---~g~Fteevv-~~Ma~~~erPIIF 495 (643)
..++.|+++...+||+|=++.. ++-...+++ +++. +.++||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 2388999988889999987653 122234554 4454 4577876
No 220
>PRK07411 hypothetical protein; Validated
Probab=72.50 E-value=3.8 Score=45.15 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|++.||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 567889999999999999999999875 76 799999987
No 221
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=72.08 E-value=4.7 Score=46.54 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCC-ccCCchhchhhccccCCCCCHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-LESLQHFKKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R-~~~L~~~k~~fA~~~~~~~~L~e~V 459 (643)
++.-|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+.+- ..+|-.|..--++..+....-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 4567999999999999999999877 54 7899999753333321 0123333222222222222344555
Q ss_pred hccCCcEE-----EEccCCCCCCCHHHHHHH-------Hc-CCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 006498 460 NAIKPTIL-----IGTSGQGRTFTKEVVEAM-------AS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 526 (643)
Q Consensus 460 ~~vkPtvL-----IG~S~~~g~Fteevv~~M-------a~-~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSP 526 (643)
|.+-|.+- +-.-=.|-...++-+++- .+ ..++-+||=|.--- -+---|.- +....-+.++-+.-=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtl-l~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTL-LAAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHH-HHhhhcceEeeeecc
Confidence 55555432 111112223333322221 11 23577999775411 11112211 111233444433333
Q ss_pred CCCccc--CCeee----CcCCCCcccccchhhHHHHHh
Q 006498 527 FDPFEY--GDNVF----VPGQANNAYIFPGLGLGLIMS 558 (643)
Q Consensus 527 F~pV~~--~Gk~~----~p~Q~NN~yiFPGiglG~l~s 558 (643)
|+...+ .|-.. --+|.-+.-..||==||+..+
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776654 33222 225666666777777777543
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=71.74 E-value=13 Score=46.28 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc------------Ce---EEE--EeCCCccc-CCCccCCchhch
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR------------KK---IWL--VDSKGLIV-SSRLESLQHFKK 443 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr------------~~---i~l--vD~~GLv~-~~R~~~L~~~k~ 443 (643)
.--+|||.|+|..|.|.++++...-.+ -++.++-+ ++ +|- +.+.-.+. .+... -=+.+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSK-QFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcc-ccchhh
Confidence 357999999999999999988643111 02222210 11 221 11111111 11000 001122
Q ss_pred hhccccCCCCCHH-HHHhccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 006498 444 PWAHEHEPVKELV-DAVNAIKPTILIGTS----GQGRTFTKE-VVEAMAS 487 (643)
Q Consensus 444 ~fA~~~~~~~~L~-e~V~~vkPtvLIG~S----~~~g~Ftee-vv~~Ma~ 487 (643)
.|+|+..=...+. +++.. .|+|||.- ..|.++|+| +++.|..
T Consensus 279 y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred hccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 3444322223454 67776 99999984 234578999 8888874
No 223
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.70 E-value=18 Score=38.89 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.|.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888888999999999999999975 568888888753 242 35555432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357888887 99999999999999999986
No 224
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=71.69 E-value=8 Score=43.90 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc---ccCCCCCHHHHHhc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNA 461 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V~~ 461 (643)
+|-|+|.|..|.++|..|.. .|. ++++.|++ .++ .+++.+.-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~-----~G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS-----RGF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH-----CCC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 68999999999999999975 353 58888873 222 2222211000 01134689999986
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 006498 462 I-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNP 500 (643)
Q Consensus 462 v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 500 (643)
. +|+++| +.-.++..+++|++.+.. ..+..||.=+||=
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 5 688555 444455678888887764 4567889989984
No 225
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.53 E-value=8.5 Score=32.26 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCccc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~ 431 (643)
|++|+|+|..|+-+|..+.. .| +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-----~g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-----LG-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----hC-------cEEEEEeccchhh
Confidence 78999999999999998854 24 6899999987766
No 226
>PRK06823 ornithine cyclodeaminase; Validated
Probab=71.35 E-value=24 Score=37.98 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=66.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc---cCCCCCHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 458 (643)
.-.++.++|+|.-+...++.++.. .. -++|+++|+. .++ ...+...+.+. -....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TD------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999888887776553 12 3788888774 222 22333222111 1123689999
Q ss_pred HhccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHH
Q 006498 459 VNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 511 (643)
Q Consensus 459 V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~edA 511 (643)
|+. .||++-+++. ...|..+.++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 986 9999875433 3477877775 455677776433 4689988654
No 227
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.34 E-value=8.8 Score=44.06 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..+++.+++|+|||.||.+||..+++ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446888999999999777777666653 35 2 68888873
No 228
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.27 E-value=5.7 Score=40.38 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
-+|+|+|||.||+..|-.|.. .|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR-----AGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH-----TTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh-----ccc-------ccccchhcccc
Confidence 479999999999999988875 365 48888886443
No 229
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.07 E-value=5.6 Score=41.12 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999998
No 230
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.00 E-value=21 Score=38.35 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch
Q 006498 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (643)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~ 440 (643)
=.-+|-.|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .|... ...+.+|.++
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------- 190 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------- 190 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC-------------
Confidence 34667788888899999999999999999764 67778777753 22110 1134444332
Q ss_pred hchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 -----------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999996
No 231
>PLN02527 aspartate carbamoyltransferase
Probab=70.99 E-value=1.2e+02 Score=32.67 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred HHhcCCCcceeeecCCCCcHHHHHHHHcCCCceec--cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHH
Q 006498 322 KQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 399 (643)
Q Consensus 322 ~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA 399 (643)
-.+| .++++ .-.+...... -+.+| .++||.| |+...==.=+||=++.-.+..| ++++.||+++|.+.=+ -++
T Consensus 93 ls~y-~D~iv-iR~~~~~~~~-~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~ 166 (306)
T PLN02527 93 VEGY-SDIIV-LRHFESGAAR-RAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTV 166 (306)
T ss_pred HHHh-CcEEE-EECCChhHHH-HHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhH
Confidence 3456 44333 4445444433 33454 4789999 4333333456777777666666 5999999999988432 245
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc-C---CCCCHHHHHhccCCcEEEEccCCC
Q 006498 400 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 400 ~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~-~---~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
+-++.++.+..|+ +|+++-.+|+-- ++....++++. . ...++.|+++. .||+.-.+.+.
T Consensus 167 ~Sl~~~~~~~~g~-------~v~~~~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q~ 229 (306)
T PLN02527 167 RSLAYLLAKYEDV-------KIYFVAPDVVKM-------KDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQR 229 (306)
T ss_pred HHHHHHHHhcCCC-------EEEEECCCccCC-------CHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcch
Confidence 5555544432253 688888887721 11122233321 1 13689999997 99999877653
No 232
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.92 E-value=6.1 Score=38.83 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=51.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc----hhhc---ccc--------
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWA---HEH-------- 449 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k----~~fA---~~~-------- 449 (643)
||.|+|||..|.|||-+++.. |. ++.++|.+-- .++..+ +.+. +..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~-------~l~~~~~~i~~~l~~~~~~~~~~~~~~~ 61 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPE-------ALERARKRIERLLDRLVRKGRLSQEEAD 61 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHH-------HHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChH-------HHHhhhhHHHHHHhhhhhhccchhhhhh
Confidence 688999999999999999864 64 7889998521 121111 1111 100
Q ss_pred ------CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006498 450 ------EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 450 ------~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (643)
.-..+|.+++ ..|.+|=.-.-.--.++++.+.+.+.+..=.||+
T Consensus 62 ~~~~~i~~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 62 AALARISFTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp HHHHTEEEESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred hhhhhcccccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 0113566655 2677776544333457788888887775555553
No 233
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.85 E-value=20 Score=38.71 Aligned_cols=87 Identities=11% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.|.+++.++++++|.+. -|.-+|.||... +.. ....+.+|.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3567788888899999999999999999764 677788777531 110 00134444432
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 234
>PLN02602 lactate dehydrogenase
Probab=70.40 E-value=15 Score=40.25 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=77.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCC---CCHHHHHh
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 460 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~---~~L~e~V~ 460 (643)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ... .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 255 3689999974211111111233322 22221 111 34444 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEee
Q 006498 461 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 523 (643)
Q Consensus 461 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifAS 523 (643)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89988665553 3 233 7788888999999999999997 344445566552 1346777
Q ss_pred CCC
Q 006498 524 GSP 526 (643)
Q Consensus 524 GSP 526 (643)
|.-
T Consensus 179 gt~ 181 (350)
T PLN02602 179 GTN 181 (350)
T ss_pred cch
Confidence 743
No 235
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.30 E-value=10 Score=40.75 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 006498 383 DQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~ 404 (643)
..||.|+|||+-|+.+|..+.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998864
No 236
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=70.28 E-value=9.5 Score=41.40 Aligned_cols=108 Identities=20% Similarity=0.365 Sum_probs=68.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC-CcccCCCccCCchhchhhc-ccc--CCCCCHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWA-HEH--EPVKELVDAV 459 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~-GLv~~~R~~~L~~~k~~fA-~~~--~~~~~L~e~V 459 (643)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-...| |.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999888843 2442 479999987 222222222 33221 121 110 00023 4556
Q ss_pred hccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 006498 460 NAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w 514 (643)
+. .|+.|=+.|.+ | ..-+++.+++++++...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 65 78877454443 3 13467888999999999999999999 77766
No 237
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=70.28 E-value=18 Score=40.09 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc
Q 006498 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (643)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k 442 (643)
-+|-.|++.=|+..|.+++.+++|++|-+. .|.-+|.||.. .|. .+.+|.++
T Consensus 212 PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~--------------- 264 (364)
T PLN02616 212 PCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR--------------- 264 (364)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC---------------
Confidence 456677888889999999999999999754 57777777753 242 35555432
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 443 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 265 ---------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ---------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ---------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1468888886 99999999999999999996
No 238
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=70.19 E-value=8.3 Score=40.65 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=56.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCc-----hhchhhccc-cCCCCCHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHE-HEPVKELVD 457 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~-----~~k~~fA~~-~~~~~~L~e 457 (643)
.||.|+|+|..|..+|..+... | .+++++|+..-...-+...+. ..+..+... -....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998753 5 368888874211000000000 000000000 0001233 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCC
Q 006498 458 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQ 503 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~ 503 (643)
+++ ++|++|=+.... ..+++++.+... .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478777443322 358888888764 455678888887643
No 239
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=69.95 E-value=6.4 Score=42.59 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567999999999999999998753 32 2367777765
No 240
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=69.89 E-value=38 Score=36.59 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=80.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (643)
|..|.++++.|+|-|..|..||+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 45689999999999999999999875232 54 455566531 0 00 00011 111247999
Q ss_pred HHhccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCC--C
Q 006498 458 AVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--P 529 (643)
Q Consensus 458 ~V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASGSPF~--p 529 (643)
+++. .|+++=. ...-|.|+++.++.|. +.-++.=.|. .++--|+|+- ..+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9986 8887632 1123689999999996 5566665544 5555554442 245665444221111 1
Q ss_pred cccCCeeeCcCCCCcccccchhhH
Q 006498 530 FEYGDNVFVPGQANNAYIFPGLGL 553 (643)
Q Consensus 530 V~~~Gk~~~p~Q~NN~yiFPGigl 553 (643)
...+. . -=...|+.+-|=+|-
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCCC
Confidence 10010 0 013458888887763
No 241
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=69.77 E-value=13 Score=42.13 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=62.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--cCCCCCHHHHHhcc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 462 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~v 462 (643)
.|-|+|.|..|..+|..|+.. |. ++++.|+. ..+ .+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999999653 53 57777764 221 22222221111 12345788888664
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 006498 463 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 499 (643)
Q Consensus 463 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 499 (643)
+|+++| ++-.+|..+++|++.+..+ .+.-||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444566788898887654 56789999988
No 242
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=69.65 E-value=4.4 Score=43.23 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++|++-+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 357889999999999999999999875 76 799999998
No 243
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=69.60 E-value=1.3e+02 Score=32.78 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEee-CC
Q 006498 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFAS-GS 525 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEct~edA~~wT~GraifAS-GS 525 (643)
+.++=+.+||+++|..++.+ +.-.-+.+=.++-||=|.+=.-||.. ..+.|.+|+++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 34444556899999988754 33322322225556668888899873 4577877776532 111111 21
Q ss_pred CCCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHH
Q 006498 526 PFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAA 605 (643)
Q Consensus 526 PF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~ 605 (643)
.||. ..+.||-.=|-...|.+.-+..+..---.|.+.+-++.+.-+.+ . .-|+.-.+-+...+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1111 24678888888888888887777776667777777776653332 1 2344444555666666
Q ss_pred HHHHHHHH
Q 006498 606 EVAAKAYE 613 (643)
Q Consensus 606 aVa~~A~~ 613 (643)
.|++..++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 66666654
No 244
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=69.46 E-value=6 Score=42.86 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 799999986
No 245
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=69.23 E-value=1e+02 Score=34.50 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=112.7
Q ss_pred cCCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 006498 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEIS 407 (643)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~li~~~m~ 407 (643)
+..++|+|--- +.+|=-+++.+|+..|- .|..|.+.++.|+|-|..|..+|+.+..
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~--- 172 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAES--- 172 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHH---
Confidence 35777777432 33555678888877663 2456899999999999999999998853
Q ss_pred HhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHH
Q 006498 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVE 483 (643)
Q Consensus 408 ~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~ 483 (643)
-|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- .-+.|+++.+.
T Consensus 173 --fGm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 173 --LGM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred --CCC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 265 688888631 1 0010 01 123479999987 888763311 22689999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCC---CCCCcccCCeeeC-cCCCCcccccchhhHHHHH
Q 006498 484 AMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGS---PFDPFEYGDNVFV-PGQANNAYIFPGLGLGLIM 557 (643)
Q Consensus 484 ~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASGS---PF~pV~~~Gk~~~-p~Q~NN~yiFPGiglG~l~ 557 (643)
.|. +.-++.-.|. .++-=|+|+. ...|+ |.+-|. +.+|..-+..... --+..|+++-|=+|-...-
T Consensus 228 ~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 228 LMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred cCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 996 5567776554 4454444431 23566 333221 1122211100001 1234689999988844322
Q ss_pred hCCcccCHHHHHHHHHHHHcccCcc
Q 006498 558 SGAIRVHDDMLLAAAEALAGQVTQE 582 (643)
Q Consensus 558 s~a~~Itd~M~laAA~aLA~~v~~~ 582 (643)
-...|...+++.+......+
T Consensus 300 -----a~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 300 -----AQENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred -----HHHHHHHHHHHHHHHHHcCC
Confidence 23445566666666665433
No 246
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.16 E-value=23 Score=38.27 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.|.+++++++|++|.+. .|.-+|.||.. .|. .+.+|.++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888889999999999999999764 68888887753 243 34555332
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999996
No 247
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=68.96 E-value=10 Score=34.97 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=48.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
||+++|+ |-.|..|++.+.+. .|+ +=.+.+|++.=-..+. ++-+.-......-+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999998752 343 3467788876111111 1111110000011112467777766
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (643)
+||+|=.|... -..+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777666432 233444444443 4455543
No 248
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.77 E-value=1.2e+02 Score=32.11 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=24.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++++++|+|..|+..+.++... .|- .+++.+|+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~~ 198 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGKH 198 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeCc
Confidence 478999999998877666655432 131 368878763
No 249
>PLN02688 pyrroline-5-carboxylate reductase
Probab=68.77 E-value=17 Score=37.02 Aligned_cols=104 Identities=18% Similarity=0.320 Sum_probs=58.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-eCCCcccCCCccCCchhchhhcccc-CCCCCHHHHHhcc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAI 462 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lv-D~~GLv~~~R~~~L~~~k~~fA~~~-~~~~~L~e~V~~v 462 (643)
||.|+|.|..|..||+-|++. |.- -..+|+++ |+. .++ .+ .+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998653 420 12367877 542 111 11 121111 122467788765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQ 516 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEct~edA~~wT~ 516 (643)
.|++| ++..+ ...+++++.+... .+..+|..+++.+ +.++..+|..
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~-----~~~~l~~~~~ 108 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI-----TLADLQEWAG 108 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC-----cHHHHHHHcC
Confidence 66665 33333 4577888777543 3445666665554 3444445543
No 250
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=68.67 E-value=5.9 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 387 v~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|+|||.||+..|-.|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 365 348899987
No 251
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=68.28 E-value=22 Score=37.38 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888642 53 2468888874
No 252
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.76 E-value=18 Score=40.56 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
++++|++|+|.|..|.++|++|.. .|. ++++.|.+-.........|... -.+... ..-.+.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~-----~g~-------~v~~~d~~~~~~~~~~~~l~~~-~~~~~~----~~~~~~~~ 68 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA-----HLP-------AQALTLFCNAVEAREVGALADA-ALLVET----EASAQRLA 68 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH-----cCC-------EEEEEcCCCcccchHHHHHhhc-CEEEeC----CCChHHcc
Confidence 567899999999999999999874 353 5788886522110000012110 001100 11123343
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 494 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 494 (643)
++|.+|=.++.+ .-.+++.++-. ..-|||
T Consensus 69 --~~d~vV~SpgI~-~~~p~~~~a~~--~~i~i~ 97 (468)
T PRK04690 69 --AFDVVVKSPGIS-PYRPEALAAAA--RGTPFI 97 (468)
T ss_pred --CCCEEEECCCCC-CCCHHHHHHHH--cCCcEE
Confidence 378888777776 34555555433 346676
No 253
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=67.69 E-value=11 Score=40.20 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=54.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc---ccCCCCCHHHHH
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAV 459 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V 459 (643)
-.++.|+|+|.-|..-++.++.. .++ ++|+++|+. ..+ ...+...+.+ +-....+++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36999999999888877776654 233 789988874 222 3333333333 112246899999
Q ss_pred hccCCcEEEEccCCCC---CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006498 460 NAIKPTILIGTSGQGR---TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g---~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 510 (643)
+. .|+++-++.... .|+.+.++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 999998755443 57777665 344566665422 245666643
No 254
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.59 E-value=6.7 Score=42.00 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 699999987
No 255
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=67.49 E-value=11 Score=33.76 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=49.9
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEE
Q 006498 390 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 469 (643)
Q Consensus 390 GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 469 (643)
|.|..|.+++++|...-.. .+ -+=..++|+++++...+ ...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKDW--------AASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETTH--------HHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhhh--------hhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764211 01 23467788874444331 111122233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 470 TSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 470 ~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 3345554555554 3345553
No 256
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=66.77 E-value=14 Score=39.40 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=74.5
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEE
Q 006498 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 467 (643)
Q Consensus 388 ~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 467 (643)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+-.-.+.+...-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 36899999842111111112333322221111001123466776 8999
Q ss_pred EEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 006498 468 IGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 526 (643)
Q Consensus 468 IG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G--raifASGSP 526 (643)
|=+.+.+.. .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|++|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccch
Confidence 877666421 12467788888999999999999983 555556665421 236777643
No 257
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.58 E-value=26 Score=35.30 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=41.7
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
||++.|| |-.|-.+++.+.+ .| .+++.+++. ..| +. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6889996 9888888888764 24 367777763 111 21 1245888888889
Q ss_pred CcEEEEccCCC
Q 006498 464 PTILIGTSGQG 474 (643)
Q Consensus 464 PtvLIG~S~~~ 474 (643)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 258
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=66.40 E-value=8.6 Score=39.36 Aligned_cols=38 Identities=37% Similarity=0.548 Sum_probs=33.0
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++|++-|++++|+|.-|..+++.++.+ |+ ++++++|.+
T Consensus 26 ~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 26 QKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 568889999999999999999999875 65 569999987
No 259
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=66.32 E-value=24 Score=38.91 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh
Q 006498 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (643)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~ 441 (643)
.-+|-.|++.=++-.|.+++++++|++|-+. .|.-+|.||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 4567778888889999999999999999754 67777777753 243 34555443 1
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006498 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (643)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 483 (643)
++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999997
No 260
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.95 E-value=16 Score=38.65 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||.|+|||+.|+.+|..+.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998653 4 457777764
No 261
>PRK07877 hypothetical protein; Provisional
Probab=65.63 E-value=13 Score=44.49 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=62.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch----------hchhhccc
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH----------FKKPWAHE 448 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~----------~k~~fA~~ 448 (643)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+ ..+ +|+. .|..-|++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 46889999999998 899999888764 63 268999998833 221 2444 11111110
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006498 449 -----HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 449 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 498 (643)
.+. . .++.+.++. .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 0 145555554 6777765542 23666677777777788887764
No 262
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=65.09 E-value=16 Score=40.50 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCceEEEeCcchHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 382 ADQRFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 382 ~d~riv~~GAGsAG~G-IA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
+.+||+|+|.|-.|++ +|++|.. .|. ++...|.+-. ...+.|......+... .+ .+.++
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~-----~G~-------~V~~~D~~~~---~~~~~l~~~gi~~~~~----~~-~~~~~ 65 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN-----LGY-------KVSGSDLKES---AVTQRLLELGAIIFIG----HD-AENIK 65 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh-----CCC-------eEEEECCCCC---hHHHHHHHCCCEEeCC----CC-HHHCC
Confidence 4468999999999999 7988864 363 5788887521 1111121111111111 11 13333
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCC
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGS 525 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT-~GraifASGS 525 (643)
++|.+|=..+.+ .-++++.++-. ..-||| +..|. ++.+. +.+.|-.|||
T Consensus 66 --~~d~vv~spgi~-~~~~~~~~a~~--~~i~i~-------~~~e~----~~~~~~~~~~I~ITGT 115 (461)
T PRK00421 66 --DADVVVYSSAIP-DDNPELVAARE--LGIPVV-------RRAEM----LAELMRFRTSIAVAGT 115 (461)
T ss_pred --CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHHHccCcEEEEECC
Confidence 488888666665 34666666543 345664 22333 23332 2367778887
No 263
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=64.64 E-value=8.2 Score=38.79 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+++|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999988754 253 68999975
No 264
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=64.53 E-value=6.4 Score=41.69 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~ 432 (643)
+|++++|+++|.|..|--++|.|+. .|+ .+|.++|.+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999999888888765 476 79999999866544
No 265
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=64.38 E-value=33 Score=36.39 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.7
Q ss_pred hCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh----------chhh
Q 006498 377 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----------KKPW 445 (643)
Q Consensus 377 ~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~----------k~~f 445 (643)
++..++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445577789999997 99999988888742 4 257778763 11111111111 0111
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 006498 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 446 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 498 (643)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 21222356777774 9999988876432 2457888888776678998754
No 266
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.35 E-value=9.1 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|+|.-|+-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 76 799999987
No 267
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=63.68 E-value=38 Score=37.05 Aligned_cols=121 Identities=12% Similarity=0.174 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh
Q 006498 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (643)
Q Consensus 366 ~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f 445 (643)
+.|+.++|=.+..++- .++.|+|+|.-+-.. ++++.+..++ ++|++.|+. . +....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~q----l~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQ----LEALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHH----HHHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 4456677766666643 478899999765444 4444443343 677777764 1 1122222222
Q ss_pred ccc----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHHhc
Q 006498 446 AHE----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEAYT 513 (643)
Q Consensus 446 A~~----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~edA~~ 513 (643)
.+. -....+++++|+. .|+++.++... ..|+.+.|+ +.--|-++ ||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999997 99999874432 477888886 33334444 5677789999976554
No 268
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=62.69 E-value=7.8 Score=37.00 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=56.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ .+.....-+ ....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~~~~~~g~---~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AEALAEAGA---EVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HHHHHHTTE---EEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hhhhHHhhh---hhhhhhhhHhhc--
Confidence 5899999999999999999642 53 68888853 211 222222212 234689999988
Q ss_pred CcEEEEccCCCCCCCHHHHHH--HH-cCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 006498 464 PTILIGTSGQGRTFTKEVVEA--MA-SLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~--Ma-~~~erPIIFaLSNPts~aEct~edA~~w 514 (643)
.|++|=+-.-+ .=.++++.. +. ...+..||.=+|+-. +|.+-+-+-.+
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 57776432211 123455554 33 344666777777655 55555444333
No 269
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=62.67 E-value=27 Score=37.88 Aligned_cols=130 Identities=19% Similarity=0.356 Sum_probs=78.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC-cccCCCccCCchhchhhccccC--CCCCH
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQHFKKPWAHEHE--PVKEL 455 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G-Lv~~~R~~~L~~~k~~fA~~~~--~~~~L 455 (643)
++.+..||.++|+|..|+++|-.|+.. |++ +++.++|-.= .+--..+| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456678999999999999999888753 663 6788999651 12222222 44 3345554311 11222
Q ss_pred HHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-----
Q 006498 456 VDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ----- 516 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~----- 516 (643)
. +-+ ..++.|=+.+.-+. .=+.+|.++.++.+.-+++-.|||. |.++|--
T Consensus 84 ~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 S-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred c-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 2 111 24555544443322 2246777778899999999999998 6665521
Q ss_pred --CcEEEeeCCCCCCcc
Q 006498 517 --GRAIFASGSPFDPFE 531 (643)
Q Consensus 517 --GraifASGSPF~pV~ 531 (643)
-.-+|.||.=.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 123566776555554
No 270
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.62 E-value=13 Score=40.80 Aligned_cols=95 Identities=23% Similarity=0.384 Sum_probs=52.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc--ccCCCccCCchhchhhccc------cCCCCCH
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE------HEPVKEL 455 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL--v~~~R~~~L~~~k~~fA~~------~~~~~~L 455 (643)
.||.++|||+=|+.+|..+.+. |- .=++|..|.+=. |-.+|. ..+|-.. -.-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999863 41 235776664300 111121 1112211 1112578
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHH-cCCCCcEEEecC
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMA-SLNEKPIIFSLS 498 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma-~~~erPIIFaLS 498 (643)
.++++. --.+|++++++ +..++++.|. ...++.+|.-+|
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888875 12345555553 4677777775 223444444443
No 271
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.56 E-value=25 Score=34.56 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+++++++|.|+ |..|..+|+.+++ .| -+++++|+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 6666666666643 25 368888774
No 272
>PRK00536 speE spermidine synthase; Provisional
Probab=62.52 E-value=11 Score=39.70 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=60.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh--c
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN--A 461 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~--~ 461 (643)
.|+||+|+|-.| +|+-++.. . +++.|||-++-|++--++.++..+.-|.. +..+=...+.+ .
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~D--pRv~l~~~~~~~~~ 137 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNN--KNFTHAKQLLDLDI 137 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcC--CCEEEeehhhhccC
Confidence 899999999985 55555543 1 38999999998775544446665554432 22110112222 1
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPF 527 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF 527 (643)
-+=||+|-=|. |+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 138 ~~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 138 KKYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred CcCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 25788886553 6776665543 2333 3677777788887
No 273
>PRK07340 ornithine cyclodeaminase; Validated
Probab=62.19 E-value=44 Score=35.63 Aligned_cols=103 Identities=10% Similarity=0.161 Sum_probs=61.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCC--CCCHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 458 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~--~~~L~e~ 458 (643)
....+++++|+|..|...++.++.. .++ ++|+++|+. .++ ...+...+.+...+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888887653 243 578888874 222 22233333211111 3578899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHH
Q 006498 459 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAE 509 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~e 509 (643)
++. .|++|-++... .+|+.+ + .+.--|-++.-.+ .+.|+.+|
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~------~~g~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-A------RAGRLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-C------CCCCEEEecCCCCCCcccCCHH
Confidence 985 99999776544 244432 2 1344555554322 35677765
No 274
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.07 E-value=33 Score=35.79 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=52.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G-~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (643)
+||.|+|+|..|..+|..+... | ++ ..+++++|++. . +.+......+. ......+..|+++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~---~---~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK---N---EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc---H---HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988642 4 21 24678777631 0 11111111110 00112456666654
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 501 (643)
+|++| ++..+ ...+++++.++.+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 67666 44333 3455666666432 2334555566654
No 275
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=62.03 E-value=44 Score=36.37 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=62.0
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh-ccccCCCCC
Q 006498 376 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 454 (643)
Q Consensus 376 ~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f-A~~~~~~~~ 454 (643)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. ++..+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 4456788999999999999999999997 43 54 4555665432 1111111 221 23
Q ss_pred HHHHHhccCCcEEEEccCC----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 006498 455 LVDAVNAIKPTILIGTSGQ----GRTFTKEVVEAMASLNEKPIIFSLSN 499 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~----~g~Fteevv~~Ma~~~erPIIFaLSN 499 (643)
|.|.++. .|+|+-..-- -++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8888886 8888854221 2689999999996 4455554444
No 276
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=61.55 E-value=51 Score=35.99 Aligned_cols=130 Identities=15% Similarity=0.259 Sum_probs=79.8
Q ss_pred HhcCCCcceeeecCCCCcHHHHHHHHcCCCceeccC-CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHH
Q 006498 323 QNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD-IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAEL 401 (643)
Q Consensus 323 ~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDD-iQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~l 401 (643)
.+| .++++ +-.+. +.+.+.+.+| .++||.|-+ -.-=-.=+|+=++.-.+..|++|++.||.++|-+.- ++++-
T Consensus 99 s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~S 172 (334)
T PRK01713 99 GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGNS 172 (334)
T ss_pred HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHHH
Confidence 446 44443 33333 2334444454 468999932 222234467777777777777899999999998753 47887
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc----CCCCCHHHHHhccCCcEEEEcc
Q 006498 402 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTS 471 (643)
Q Consensus 402 i~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG~S 471 (643)
++.++.+ .|+ +|.++-.+++.-.+ + .-+.-+.+++.. ....++.++++. .||+.-.+
T Consensus 173 l~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt~~ 233 (334)
T PRK01713 173 LLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHTDV 233 (334)
T ss_pred HHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcc
Confidence 7776665 475 68888888773321 1 111223344321 123689999997 99998653
No 277
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.30 E-value=17 Score=39.25 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=52.1
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCcc
Q 006498 357 DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 436 (643)
Q Consensus 357 DDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~ 436 (643)
|+..+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+. +..|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH--
Confidence 3344444444444433422222222333999999999998763332 22364 689988874 333
Q ss_pred CCchhchhhccc--cCCCC-CHHHHHh----ccCCcEEEEccCC
Q 006498 437 SLQHFKKPWAHE--HEPVK-ELVDAVN----AIKPTILIGTSGQ 473 (643)
Q Consensus 437 ~L~~~k~~fA~~--~~~~~-~L~e~V~----~vkPtvLIG~S~~ 473 (643)
|+..++.++-+ ..+.. ...+.+. .-..|+.|=+|+.
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 44444433322 11111 2333332 2368999999993
No 278
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=61.29 E-value=9.5 Score=41.55 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|+|+|||.||...|..++. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 46677765
No 279
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=61.15 E-value=25 Score=37.26 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=72.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC-CcccCCCccCCchhchhhcccc-CCCCCHHHHHhccC
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 463 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~-GLv~~~R~~~L~~~k~~fA~~~-~~~~~L~e~V~~vk 463 (643)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++..-. .+|.+...++.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 4689999999999876653 365 2589999974 2211111 12444433321110 01234 456765
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 006498 464 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 525 (643)
Q Consensus 464 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGS 525 (643)
.|++|=+.+.+ |- .=+++++.+.+++..-+|+=.|||. ++...-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887555543 21 1246777888899999999999997 34444555542 1233666653
No 280
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=60.88 E-value=26 Score=37.73 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=81.3
Q ss_pred CCcceeeecCCCCcHHHHHHHHc--CCCceecc--------CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HH
Q 006498 327 ERILIQFEDFANHNAFDLLEKYG--TTHLVFND--------DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AG 395 (643)
Q Consensus 327 p~~lIqfEDf~~~nAf~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGs-AG 395 (643)
--.+|||==...-++-.+|++-. +++==||- ...+--.+|-+|++--++-.+.+|.+.++|++|.+. -|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 33567765444455555555432 11111111 133455778899999999999999999999999886 57
Q ss_pred HHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCC
Q 006498 396 TGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGR 475 (643)
Q Consensus 396 ~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g 475 (643)
--+|.+|..+ +. .+.+|+++ .++|.+.+++ +|++|-.-|.++
T Consensus 170 kPla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7777777642 32 35555553 1357788886 999999999999
Q ss_pred CCCHHHHH
Q 006498 476 TFTKEVVE 483 (643)
Q Consensus 476 ~Fteevv~ 483 (643)
.|+.++|+
T Consensus 212 ~i~~d~vk 219 (283)
T COG0190 212 FIKADMVK 219 (283)
T ss_pred cccccccc
Confidence 99988886
No 281
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=60.85 E-value=11 Score=40.85 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=26.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 589999987443
No 282
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=60.79 E-value=24 Score=39.50 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=47.5
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCcc--CCchhchh--hc
Q 006498 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE--SLQHFKKP--WA 446 (643)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~--~L~~~k~~--fA 446 (643)
..++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+...... ..
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v 378 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVM 378 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEE
Confidence 3444444566889999998888888999988643 4872 3333211 111100 01111100 00
Q ss_pred cccCCCCCHHHHHhccCCcEEEEc
Q 006498 447 HEHEPVKELVDAVNAIKPTILIGT 470 (643)
Q Consensus 447 ~~~~~~~~L~e~V~~vkPtvLIG~ 470 (643)
.+..+...+.+.++..+||++||-
T Consensus 379 ~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 379 LDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011222458888899999999984
No 283
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=60.75 E-value=5.5 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALE 405 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~ 405 (643)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 284
>PRK13938 phosphoheptose isomerase; Provisional
Probab=60.51 E-value=27 Score=35.26 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=52.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~ee-Ar~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
++.||.|+|.|..| -+|+.+...|.. ++..+- +-..+-+.......+.- .+ =..+...|++. +.-.
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~-- 110 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGS-- 110 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhc--
Confidence 57899999999987 567777665532 111100 01112222221111100 00 01122223221 2212
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (643)
.-+-|++|++|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 111 ~~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 111 ARPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 235799999999874 999999874 344445554444433
No 285
>PRK07589 ornithine cyclodeaminase; Validated
Probab=60.36 E-value=69 Score=35.18 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=64.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc---CCCCCHHHHH
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 459 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~---~~~~~L~e~V 459 (643)
-.++.|+|+|.-+..-++.++.. .. -++|+++|+. ..+ .+.+.+.+.+.. ....+++|+|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LG------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CC------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887777666553 22 3788888764 222 233333332211 1236899999
Q ss_pred hccCCcEEEEccCCC---CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006498 460 NAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 510 (643)
+. .||++-++... .+|..+.++. .--|-++ |+--.+-|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 87 99999876432 4688877742 2235555 4444578999874
No 286
>PRK05866 short chain dehydrogenase; Provisional
Probab=60.31 E-value=27 Score=36.19 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..+++.++||.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 344444444443 35 368888875
No 287
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.23 E-value=14 Score=41.35 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCC
Q 006498 372 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP 451 (643)
Q Consensus 372 ~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~ 451 (643)
.++.-....|.+.|+.++|-+.-..++++.+.+ .|+... .+ .++.+ ......+... .-+. .+
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~-~~~~~----~~~~~~~~~~-~~~~---~D 361 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AA-VTTTG----SPLLQKLPVE-TVVI---GD 361 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EE-EeCCC----CHHHHhCCcC-cEEe---CC
Confidence 344444446678999999988888999999753 477321 11 12211 0000011111 0111 22
Q ss_pred CCCHHHHHhccCCcEEEEccC
Q 006498 452 VKELVDAVNAIKPTILIGTSG 472 (643)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S~ 472 (643)
...|++.++..+||++||-|-
T Consensus 362 ~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 362 LEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred HHHHHHHHhhcCCCEEEECcc
Confidence 246788898899999998664
No 288
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=60.04 E-value=44 Score=33.73 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=44.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 458 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k----~~fA~-~~~~~~~L~e~ 458 (643)
||+|.|| |..|-.+++.++.. |- ..+++.+|+... ..+.+.+.... ..+-. +..+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88888888877542 31 236777875311 01111121111 11111 22233468888
Q ss_pred HhccCCcEEEEccCCC
Q 006498 459 VNAIKPTILIGTSGQG 474 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~ 474 (643)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 289
>PRK12828 short chain dehydrogenase; Provisional
Probab=60.00 E-value=20 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++.+++|.|| |..|..+|+.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 467789999997 555555555554 3 353 58888875
No 290
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=59.96 E-value=27 Score=37.26 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (643)
.-+++.|+|+|.-|..-++.++.. .. -++|.+.|+. .+ +.+.+...+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666552 23 3778887774 22 233444444332 122478999
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006498 458 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 510 (643)
+|+. .||++-+++.. ..|..+.++. .--|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHH
Confidence 9987 99999764432 4677777752 2345554 3322578888864
No 291
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=59.93 E-value=12 Score=40.33 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
.+|+|+|||-+|+.+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 5 4789999864
No 292
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=59.92 E-value=15 Score=41.51 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+++|||..|+-+++.|+.. |+...+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 552111 2789999987
No 293
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=59.86 E-value=2.2e+02 Score=29.54 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=32.4
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 006498 477 FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 524 (643)
Q Consensus 477 Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASG 524 (643)
.+++.+++.++..+.|+++-++.... +.+++|.-++ |-.++.-|
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 38888999988888999987665442 7899999887 54444443
No 294
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=59.76 E-value=11 Score=40.55 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=24.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|+|+|||.||...|..+.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999988764 354 46667665
No 295
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=59.63 E-value=5 Score=43.24 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=51.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhch-------hhcc-ccCCCCCHHH
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-------PWAH-EHEPVKELVD 457 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~-------~fA~-~~~~~~~L~e 457 (643)
|+|+|+|..|..+++.|++. .. ..++.+.|++ ..+ +..... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~------~~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GP------FEEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TC------E-EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CC------CCcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988753 11 1278988885 222 111111 1111 1222345888
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 458 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
.++. .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 69999988754 788888875542 334444
No 296
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=59.57 E-value=36 Score=37.40 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||.|+|+|..|..+|..++.. | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 689999999999999998752 5 357888874
No 297
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=59.50 E-value=14 Score=35.82 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|++.++||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999988888753 4 467777644
No 298
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=59.44 E-value=38 Score=36.29 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCC--CcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt 501 (643)
+-|++||+|..|. |+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988864333 35544334555
No 299
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=59.28 E-value=1.4e+02 Score=35.64 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=86.5
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCC
Q 006498 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSP 526 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~--------aEct~edA~~wT~GraifASGSP 526 (643)
+.+.-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=.-||... .+-|.++++++... |+..-=
T Consensus 403 ~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~g 477 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQG 477 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcC
Confidence 33444567899999887754 444333333356677788888998742 34455666554321 111111
Q ss_pred CCCcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHH
Q 006498 527 FDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAE 606 (643)
Q Consensus 527 F~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~~~~ir~Vs~~VA~a 606 (643)
..||..+ ..||-.=|-.++|-+--++.+..-- ++.+-+-.|.+.+ .. -..|+.-+..+-..+...
T Consensus 478 k~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-G~----------p~GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 478 KTPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-GF----------PVGPITLLDEVGIDVGAK 542 (699)
T ss_pred CeEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-CC----------CcCHHHHHHHhchHHHHH
Confidence 3455552 4688888888888776666555433 4666666665421 11 123455444555666666
Q ss_pred HHHHHHHc-CCCCCCCCchhHHHHHHh
Q 006498 607 VAAKAYEL-GLATRLPPPKDLVKYAES 632 (643)
Q Consensus 607 Va~~A~~~-GlA~~~~~p~dl~~~i~~ 632 (643)
+.+..+++ |- ....|+-+.+.+++
T Consensus 543 i~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 543 ISPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 66555433 22 22223456666665
No 300
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.25 E-value=13 Score=37.25 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=28.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~ 426 (643)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888888653 4 47888875
No 301
>PRK06184 hypothetical protein; Provisional
Probab=59.13 E-value=12 Score=41.76 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 46789999999999999988865 375 477788753
No 302
>PRK07236 hypothetical protein; Provisional
Probab=58.88 E-value=14 Score=39.55 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
+...+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998875
No 303
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.86 E-value=52 Score=36.38 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh--chhhccccCCCCCHHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~--k~~fA~~~~~~~~L~e~V 459 (643)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++.... -+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~~---~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCGG---FD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeCC---CC-hHHh
Confidence 57789999999999998888764 363 5788886521 0000112110 11111100 11 2334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 525 (643)
+ ++|++|=.++.+ .-.+++.++.. ...||+ +.+|. ++.....+.|-.|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el----~~~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIEL----FAREAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHHhcCCCEEEEECC
Confidence 3 478888666665 34677777654 456776 23333 222235678888997
No 304
>PRK06046 alanine dehydrogenase; Validated
Probab=58.61 E-value=63 Score=34.66 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (643)
.-.++.|+|+|..|...++.+... .+ -++++++|++ .++ .+.+.+.+... .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 23 3789999886 222 23333333211 112357888
Q ss_pred HHhccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHH
Q 006498 458 AVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEE 510 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaLS-NPts~aEct~ed 510 (643)
+++ .|+++-++.. ..+|..+.++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 7988876543 2467777664 333466664 444679999874
No 305
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=58.45 E-value=2.5e+02 Score=33.20 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=60.4
Q ss_pred HHHhcc------CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCc
Q 006498 457 DAVNAI------KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPF 530 (643)
Q Consensus 457 e~V~~v------kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV 530 (643)
|+.+++ +||.+|...|.||.+.- +...... .+.|-|+..- |....-++++-+-.++.|+.-+..|+
T Consensus 426 Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~G-i~~~f~~-~~~v~iigVE-~~g~~~~~~~~~a~l~~g~~g~~~g~----- 497 (610)
T PRK13803 426 EAKEQLKEQTGKLPDAIIACVGGGSNAIG-IFYHFLD-DPSVKLIGVE-AGGKGVNTGEHAATIKKGRKGVLHGS----- 497 (610)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCcCHhHHH-HHHHHhh-CCCceEEEEe-cCCCCcccccccchhhcCCeeeeccc-----
Confidence 666665 59999998887765432 1122211 3344444332 22223345555555666665444443
Q ss_pred ccCCeee----CcCCCCcccc------cchhhHHHHHh------CCcccCHHHHHHHHHHHHc
Q 006498 531 EYGDNVF----VPGQANNAYI------FPGLGLGLIMS------GAIRVHDDMLLAAAEALAG 577 (643)
Q Consensus 531 ~~~Gk~~----~p~Q~NN~yi------FPGiglG~l~s------~a~~Itd~M~laAA~aLA~ 577 (643)
+++ .-||.-+.+. +||+|-..+.. ....|||+-.++|.+.||.
T Consensus 498 ----~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~ 556 (610)
T PRK13803 498 ----MTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAK 556 (610)
T ss_pred ----eeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 121 1233333332 58887654422 2457999999999999985
No 306
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=58.39 E-value=37 Score=38.60 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=75.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHH-HHH-hcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 384 QRFLFLGA-GEAGTGIAELIALE-ISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~-m~~-~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
.||.|+|| |..|..+|-.|+.. +.. .+|+ -.++.++|.+-=..++-.-+|.+-.-++-++-.-..+-.|..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988652 100 0133 2478899875221111111233332233221110123346676
Q ss_pred ccCCcEEEEccCCCCC--------------CCHHHHHHHHc-CCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 006498 461 AIKPTILIGTSGQGRT--------------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 523 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~-~~erPIIFaLSNPts~aEct~edA~~wT~G--raifAS 523 (643)
. .|++|=+.+.+.. .=+++.+.+.+ .+..-+|+-.|||- ....--+++++.. +-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 6 8988867666421 12467777888 58999999999997 3333344444421 345666
Q ss_pred CCC
Q 006498 524 GSP 526 (643)
Q Consensus 524 GSP 526 (643)
|.=
T Consensus 251 gT~ 253 (444)
T PLN00112 251 LTR 253 (444)
T ss_pred ecc
Confidence 643
No 307
>PRK05993 short chain dehydrogenase; Provisional
Probab=58.29 E-value=28 Score=35.36 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=20.9
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..++||.|| |..|..+|+.++ + .|. ++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~----~-~G~-------~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----S-DGW-------RVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----H-CCC-------EEEEEECC
Confidence 357899998 545555555553 3 353 68888775
No 308
>PLN02240 UDP-glucose 4-epimerase
Probab=58.24 E-value=27 Score=36.37 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCch------hchhhcc-ccCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 451 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~------~k~~fA~-~~~~ 451 (643)
.|+..||+|.|| |--|..+++.|++ .| .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 8888888877764 24 3688888642100000000000 0011111 1122
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 006498 452 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 498 (643)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2457777777789999987765321 1335667776666567887533
No 309
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=58.01 E-value=6.6 Score=41.54 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
+|||+|+|.||+-.|+.+.... . ...+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCCC
Confidence 5899999999999988875421 0 13579999977543
No 310
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.87 E-value=9 Score=40.51 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+-|+|||-.|-|||...+.. |+ ++||+|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4577999999999999988764 65 79999985
No 311
>PRK08618 ornithine cyclodeaminase; Validated
Probab=57.75 E-value=28 Score=37.30 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (643)
...++.|+|+|..|-.++..++.. .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655432 243 789988875 222 22333333211 112467888
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 006498 458 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~~ 513 (643)
+++. .|++|-++..+ ..|+ +.+ .+---|.++-- --.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l------~~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKL------KKGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-Hhc------CCCcEEEecCCCCcccccCCH-HHHh
Confidence 8875 89988665433 1233 333 23445666633 224678887 3443
No 312
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=57.71 E-value=11 Score=35.81 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 387 v~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998764 1123568999999654
No 313
>PRK06847 hypothetical protein; Provisional
Probab=57.64 E-value=14 Score=38.97 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=25.2
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+|+|+|||.||+..|-.+.+ .|+ ++.++++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~-----~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR-----AGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 4689999999999999988764 364 35666654
No 314
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.17 E-value=55 Score=35.90 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=26.7
Q ss_pred CceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~G-AGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..||.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899998 999999999988653 53 58888874
No 315
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=56.95 E-value=19 Score=39.31 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 316
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.94 E-value=22 Score=42.31 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEeeCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFASGSPFD 528 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEct~edA~~wT~GraifASGSPF~ 528 (643)
++=+.++|+++|..++.. +.-.-+.....+-+|=|.+=.-||.. ..+-|.++.+++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333556899999877753 55444444444555668888999963 244454444443211 11111134
Q ss_pred CcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHHH
Q 006498 529 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 572 (643)
Q Consensus 529 pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 572 (643)
||..+ ..||-.=|-..+|-+--++.+...- .+.+.+-+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 55552 6788888888888766554444433 5656555554
No 317
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.78 E-value=31 Score=34.05 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999842 344444444433 353 58888864
No 318
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.72 E-value=11 Score=41.64 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 11 2367788775
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=56.56 E-value=15 Score=39.98 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
.||||+|+|.||+..|..+.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988542 21 1378999987543
No 320
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.25 E-value=19 Score=39.59 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc-----c
Q 006498 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-----H 447 (643)
Q Consensus 373 Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA-----~ 447 (643)
++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+. .
T Consensus 277 ~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v~ 340 (410)
T cd01968 277 ELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVIV 340 (410)
T ss_pred HHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEEE
Confidence 33344456678999999988888999987643 4873 3333211 1111 11111111110 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccC
Q 006498 448 EHEPVKELVDAVNAIKPTILIGTSG 472 (643)
Q Consensus 448 ~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (643)
...+...+.+.++..+||++||-|.
T Consensus 341 ~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 341 DDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred eCCCHHHHHHHHhhcCCCEEEECCc
Confidence 1111124668889999999999755
No 321
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.17 E-value=22 Score=40.67 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+-.+.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999987754 353 57888864
No 322
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.00 E-value=32 Score=36.29 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc--hhhccccCCCCCHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK--KPWAHEHEPVKELVDA 458 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k--~~fA~~~~~~~~L~e~ 458 (643)
....||.|+|+|+-|..+|-.+.++ | .++.++++... ..-+...+.-.. ..+-.......+-.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999888653 4 35556655421 111111110000 0000000001111222
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006498 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 502 (643)
+. .+|++| ++... .-++++++.++.. .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367776 44433 3478888888653 35678888998764
No 323
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.70 E-value=17 Score=36.74 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|+++|+||+|+|..|..-++.|+.+ | -+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999998888763 4 378888874
No 324
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.64 E-value=46 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
|++.||.|+|+|.-|-++|..+..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999865
No 325
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.47 E-value=15 Score=39.07 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 006498 383 DQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~ 404 (643)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988764
No 326
>PRK09126 hypothetical protein; Provisional
Probab=55.46 E-value=15 Score=39.12 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=25.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-----SGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4679999999999999988865 365 46666654
No 327
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.14 E-value=60 Score=33.75 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||.|+|+|..|..+|..+... | .+++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 799999999999999988652 4 258888864
No 328
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=54.98 E-value=19 Score=36.57 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 35 48999999933
No 329
>PRK06138 short chain dehydrogenase; Provisional
Probab=54.37 E-value=35 Score=33.45 Aligned_cols=77 Identities=17% Similarity=0.313 Sum_probs=40.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh--------hcc-ccC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--------WAH-EHE 450 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~--------fA~-~~~ 450 (643)
.|++.++||.||.. ||...|+..+.+ .| -++++++++. . .+...... +.+ +..
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRDA----E---AAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCCH----H---HHHHHHHHHhcCCeEEEEEcCCC
Confidence 46778999999732 344444444443 25 2688887651 1 11111111 111 222
Q ss_pred CCCCHHHHHhcc-----CCcEEEEccCCC
Q 006498 451 PVKELVDAVNAI-----KPTILIGTSGQG 474 (643)
Q Consensus 451 ~~~~L~e~V~~v-----kPtvLIG~S~~~ 474 (643)
+..++.++++.+ ++|++|=..+..
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 223566666654 789999877753
No 330
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=54.31 E-value=17 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998764 54 46667765444
No 331
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=54.19 E-value=15 Score=39.47 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999988865 364 46667665
No 332
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.16 E-value=69 Score=36.27 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHh
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (643)
+.++|++|+|.|..|+..++++.. .|. ++.+.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 356899999999999999976653 363 57778854 111 11111100000 01112334454
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 006498 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 494 (643)
Q Consensus 461 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 494 (643)
. .|++|=.++.+ .-.+++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 3 78888777766 34666665544 356776
No 333
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=53.89 E-value=16 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5789999999999999887754 354 688888764
No 334
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.64 E-value=18 Score=38.12 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988753 53 57777653
No 335
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=53.53 E-value=51 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999864
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.49 E-value=19 Score=39.98 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988864 25 368888874
No 337
>PRK06475 salicylate hydroxylase; Provisional
Probab=53.21 E-value=16 Score=39.49 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999977754
No 338
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.11 E-value=62 Score=35.82 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCC-ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHH
Q 006498 381 LAD-QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (643)
Q Consensus 381 L~d-~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (643)
++. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+. + .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~~---~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGGW---N-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCCC---C-hHHh
Confidence 344 6899999999999999998753 22 125778886421 100011211 111111100 1 1233
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 006498 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537 (643)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~ 537 (643)
. ++|.+|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777666665 34677776654 346764 33333 333445678888997 77653
No 339
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=53.10 E-value=19 Score=38.42 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 502 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPts 502 (643)
+-|++||+|..|. |+++++++.. ...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999885 9999998853 333466665566663
No 340
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=52.94 E-value=62 Score=36.44 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=84.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCc
Q 006498 356 NDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (643)
Q Consensus 356 NDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~ 435 (643)
.|.-.||+--++-|++. .|..-|...++|+.|=|--|-|||..+.. .| | ++++.+-+ .-|
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-----A--~ViVtEvD----PI~- 244 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-----A--RVIVTEVD----PIR- 244 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-----C--eEEEEecC----chH-
Confidence 36778999999999975 56677889999999999999999988743 24 2 45544332 000
Q ss_pred cCCchhchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006498 436 ESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (643)
Q Consensus 436 ~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 510 (643)
-|+.. -+.-..-++.||++. .|++|=++|.-++.+.|.++.|. .=.|.+ |-- -.-|+..+.
T Consensus 245 -AleA~-----MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~ 306 (420)
T COG0499 245 -ALEAA-----MDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAG 306 (420)
T ss_pred -HHHHh-----hcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHH
Confidence 12111 123334579999997 89999999999999999999995 334433 322 235666654
No 341
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=52.85 E-value=29 Score=38.41 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=58.5
Q ss_pred eEEEeCcchHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 385 RFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GAGsAG~G-IA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+-. . .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~~---g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIYI---G-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEeC---C-CC-HHHCC--C
Confidence 5899999999998 8988865 364 57788864211 11112211111110 0 11 12333 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGS 525 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT-~GraifASGS 525 (643)
+|.+|=.++.+ --++++.++.. ...||+ +.+|. ++++. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 88888666666 35677777665 356665 33333 22332 3467777886
No 342
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=52.81 E-value=68 Score=30.90 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMA 486 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma 486 (643)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 469999999977 4999999985
No 343
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=52.71 E-value=49 Score=32.82 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=24.4
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5556666665543 363 57777764
No 344
>PRK06182 short chain dehydrogenase; Validated
Probab=52.65 E-value=30 Score=34.88 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=39.2
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc---h-hhccccCCCCCHH
Q 006498 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK---K-PWAHEHEPVKELV 456 (643)
Q Consensus 382 ~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k---~-~fA~~~~~~~~L~ 456 (643)
+..++||.|| |..|..+|+.++ + .| -++++++++- + .+.... . .+.-+..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~----~-~G-------~~V~~~~r~~----~---~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLA----A-QG-------YTVYGAARRV----D---KMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHH----H-CC-------CEEEEEeCCH----H---HHHHHHhCCCeEEEeeCCCHHHHH
Confidence 4578999997 444444554443 3 35 3677777641 1 121111 1 1111222234566
Q ss_pred HHHhcc-----CCcEEEEccCCC
Q 006498 457 DAVNAI-----KPTILIGTSGQG 474 (643)
Q Consensus 457 e~V~~v-----kPtvLIG~S~~~ 474 (643)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666654 799999877654
No 345
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=52.45 E-value=24 Score=31.05 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=52.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 464 (643)
||.|+|+|..|......+...- .+. +=..++|.+ . +....+.+.|--+ ...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~----~---~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPD----P---ERAEAFAEKYGIP--VYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSS----H---HHHHHHHHHTTSE--EESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCC----H---HHHHHHHHHhccc--chhHHHHHHHhhcC
Confidence 7999999999777755554320 111 234566664 1 1122333333222 45789999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 465 TILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 456666666554333 5554
No 346
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.40 E-value=53 Score=32.35 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=41.9
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh---------cc-c
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW---------AH-E 448 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f---------A~-~ 448 (643)
.++..+++|.|| |..|..+|+.+++ .|. +++++++.- .+ +....+.+ .+ +
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLNQ----DG---ANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCCh----HH---HHHHHHHHHhcCceEEEEECC
Confidence 356778999998 5555555555543 353 578887741 11 11111111 11 1
Q ss_pred cCCCCCHHHHHhcc-----CCcEEEEccCCC
Q 006498 449 HEPVKELVDAVNAI-----KPTILIGTSGQG 474 (643)
Q Consensus 449 ~~~~~~L~e~V~~v-----kPtvLIG~S~~~ 474 (643)
..+..++.++++.+ ++|++|-+.+..
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 65 VTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 12223566666654 389999988764
No 347
>PRK07233 hypothetical protein; Provisional
Probab=52.36 E-value=16 Score=39.00 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||+|+|||-||+..|..|.+. | .++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888652 5 368888877
No 348
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=52.04 E-value=21 Score=40.16 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456899999999999999988865
No 349
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.99 E-value=48 Score=35.92 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=26.1
Q ss_pred CHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 454 ELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 454 ~L~e~V~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
.|.+.... .|+ ++|-|-..+ |...++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566665 787 777665333 5556899999 6889997
No 350
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=51.94 E-value=17 Score=38.71 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 353 688999764
No 351
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.87 E-value=21 Score=37.84 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..+|+|+|||.||+..|-+|...- +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999998886520 1154 67788874
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.57 E-value=13 Score=32.83 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=51.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHHhccCC
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKP 464 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~-~~~~~~~L~e~V~~vkP 464 (643)
|||+|.|..|..+++.|... + .++.++|++- .+-+.+.....++-. +..+...|.++ .--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~----~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDP----ERVEELREEGVEVIYGDATDPEVLERA-GIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSH----HHHHHHHHTTSEEEES-TTSHHHHHHT-TGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCc----HHHHHHHhcccccccccchhhhHHhhc-Ccccc
Confidence 78999999999999888641 2 5799999862 111111111111111 11112234443 44478
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCC-CcEEEecCCCC
Q 006498 465 TILIGTSGQGRTFTKEVVEAMASLNE-KPIIFSLSNPT 501 (643)
Q Consensus 465 tvLIG~S~~~g~Fteevv~~Ma~~~e-rPIIFaLSNPt 501 (643)
+.+|-++... .-+-.++....+.++ .+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776633 333344444444455 46666555555
No 353
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=51.55 E-value=75 Score=37.85 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=42.0
Q ss_pred HHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 006498 343 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422 (643)
Q Consensus 343 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~ 422 (643)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|.-|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 1122221 2288999999999988777666654 476 6898
Q ss_pred EEeCCCc
Q 006498 423 LVDSKGL 429 (643)
Q Consensus 423 lvD~~GL 429 (643)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8877644
No 354
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=51.44 E-value=28 Score=36.27 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (643)
+-|++||+|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5799999999885 899998875 344457666666776
No 355
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=51.24 E-value=72 Score=32.27 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 458 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k----~~fA~-~~~~~~~L~e~ 458 (643)
||+|.|| |..|..+++.+.+ .| .+++++|+. .......+.... -.+.. +..+..++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778875 7777777776653 24 356777642 111111111111 01111 22223467778
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 006498 459 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 496 (643)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665532111 2456677776655677773
No 356
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=51.19 E-value=19 Score=41.97 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-++.||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988875 253 47888875
No 357
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=51.05 E-value=18 Score=38.69 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.+|||+|+|.||+..|+.|... + ..-+|.+++.+.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCCC
Confidence 4899999999999999988542 1 1247888887543
No 358
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.02 E-value=21 Score=40.65 Aligned_cols=104 Identities=22% Similarity=0.346 Sum_probs=65.6
Q ss_pred CCCcccccchhhhhhHhhhcCCCCCceeeeee-cCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCc
Q 006498 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTI-DVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI 329 (643)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~ 329 (643)
.|+-|. ||+++-.|.|+-==-...-+.| .|+.| .+ +...+. .+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL~---~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLLL---ATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHHH---hCC-CCc
Confidence 455553 7999999999865233555556 56543 21 233333 233 778
Q ss_pred ceeeecCCCCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 006498 330 LIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (643)
Q Consensus 330 lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GA 391 (643)
+|-.|||.. +|.+=+|-.++-.-|.+ .-.-|+|.||||++--.--.=.+.||+||=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 899999954 45554444444333433 4567999999999765444555788888864
No 359
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.02 E-value=57 Score=35.22 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh--chhhcc-ccCCCCCHHH
Q 006498 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 457 (643)
Q Consensus 382 ~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 457 (643)
+++||+|.|| |-.|..+++.|.. .| -+++.+|+..- ..+... ...|-. +..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999999888865 25 36888887431 001110 111111 1112223455
Q ss_pred HHhccCCcEEEEccCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 006498 458 AVNAIKPTILIGTSGQGR--T---------------FTKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 498 (643)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998875431 1 2356778777776678998644
No 360
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.02 E-value=81 Score=30.06 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (643)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 5999988864 344455555444444
No 361
>PRK06841 short chain dehydrogenase; Provisional
Probab=50.92 E-value=32 Score=33.91 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++++.+++|.|| |..|..+|+.++ + .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 477889999997 545555555553 3 363 57788775
No 362
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=50.86 E-value=62 Score=33.62 Aligned_cols=86 Identities=12% Similarity=0.283 Sum_probs=52.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 385 riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
||+|.|| |-.|-.+++.+.. .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7899997 9999888877653 12 36666654110 1111122235778888889
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 006498 464 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 464 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 498 (643)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776554221 334556665554 46887544
No 363
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=50.77 E-value=25 Score=39.32 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEe
Q 006498 346 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (643)
Q Consensus 346 ~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD 425 (643)
++|....+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 456677789999888988 256778999999733 333444444433 353 577777
Q ss_pred CC
Q 006498 426 SK 427 (643)
Q Consensus 426 ~~ 427 (643)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.48 E-value=22 Score=39.74 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+.+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999988764 25 368889875
No 365
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=50.30 E-value=19 Score=40.38 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
-.|+|+|||.||...|..++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988764
No 366
>PRK06753 hypothetical protein; Provisional
Probab=50.18 E-value=20 Score=37.83 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 367
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=50.01 E-value=54 Score=34.05 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
||-|+|+|..|.++|..++. .|. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~-----~G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK-----AGY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 58899999999999999875 253 57778865
No 368
>PLN02268 probable polyamine oxidase
Probab=49.98 E-value=8.4 Score=41.85 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999965
No 369
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=49.87 E-value=21 Score=35.60 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.|+|+|||.||+..|-.+.+ .|+ ++.++|+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999977753 364 6788887743
No 370
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.70 E-value=46 Score=36.59 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc---
Q 006498 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--- 447 (643)
Q Consensus 371 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~--- 447 (643)
.-++......|+..|++++|-+.-..++++.+.+ .|+.. ..+ |-=+.++ +...+..+.+..
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e-----lGm~v-------v~~---~t~~~~~-~~~~~~~~~l~~~~~ 327 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR-----CGMIV-------VEV---GTPYLDK-RFQAAELELLPPMVR 327 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH-----CCCEE-------Eee---CCCcCCh-HHHHHHHHhcCCCCe
Confidence 4444455566778899999999889999998876 37632 111 1101111 111111111111
Q ss_pred --ccCCCCCHHHHHhccCCcEEEE
Q 006498 448 --EHEPVKELVDAVNAIKPTILIG 469 (643)
Q Consensus 448 --~~~~~~~L~e~V~~vkPtvLIG 469 (643)
+..+...+.+.++..|||.+||
T Consensus 328 v~~~~d~~~l~~~i~~~~pDlli~ 351 (396)
T cd01979 328 IVEKPDNYRQLDRIRELRPDLVVT 351 (396)
T ss_pred EEECCCHHHHHHHHHhcCCCEEEe
Confidence 1122234577799999999998
No 371
>PRK07045 putative monooxygenase; Reviewed
Probab=49.68 E-value=21 Score=38.11 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 372
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=49.55 E-value=23 Score=38.36 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 006498 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 404 (643)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~li~~ 404 (643)
-+||-++.-+++-+....|.+|++.++-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47899999999999999999999999999997 8999999999864
No 373
>PRK06392 homoserine dehydrogenase; Provisional
Probab=49.50 E-value=69 Score=34.87 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=49.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc---ccCCCC--CHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVK--ELVDA 458 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~-~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~---~~~~~~--~L~e~ 458 (643)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+....-.+ ...... ++.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 79999999999999999875210 112321 122556799998887653122221110010 001112 56666
Q ss_pred HhccCCcEEEEccC
Q 006498 459 VNAIKPTILIGTSG 472 (643)
Q Consensus 459 V~~vkPtvLIG~S~ 472 (643)
++ .+|||+|=+++
T Consensus 78 l~-~~~DVvVE~t~ 90 (326)
T PRK06392 78 FE-IKPDVIVDVTP 90 (326)
T ss_pred hc-CCCCEEEECCC
Confidence 65 58999999874
No 374
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=49.47 E-value=22 Score=38.98 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 25 4799999864
No 375
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.39 E-value=65 Score=36.24 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
.++||+|+|.|-.|.++|++|.. | -++++.|.+-. .+ ..+...+..+..... + .+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~------g-------~~v~v~D~~~~---~~-~~~~~~~~~~~~~~~---~-~~~~~- 62 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN------K-------YDVIVYDDLKA---NR-DIFEELYSKNAIAAL---S-DSRWQ- 62 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC------C-------CEEEEECCCCC---ch-HHHHhhhcCceeccC---C-hhHhh-
Confidence 46799999999999999999851 5 26888885422 11 111111111111100 1 12233
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeCC
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASGS 525 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~-GraifASGS 525 (643)
++|.+|=.++.+ .=++++.++.. ...||+ + | .|-++.+.+ .+.|-.|||
T Consensus 63 -~~d~vV~SPgI~-~~~p~~~~a~~--~gi~v~-------~--e--~el~~~~~~~~~~IaVTGT 112 (454)
T PRK01368 63 -NLDKIVLSPGIP-LTHEIVKIAKN--FNIPIT-------S--D--IDLLFEKSKNLKFIAITGT 112 (454)
T ss_pred -CCCEEEECCCCC-CCCHHHHHHHH--CCCcee-------c--H--HHHHHHHhcCCCEEEEECC
Confidence 478777666665 34566555543 356665 1 2 333455543 357777887
No 376
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=49.29 E-value=95 Score=33.19 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeC
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~ 426 (643)
+.--.+++++|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~A-k~----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGA-RM----AKA------SRIIAIDI 218 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEcC
Confidence 3334578999999987776554433 22 353 46777765
No 377
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.22 E-value=53 Score=32.78 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCCCceEEEeCc-ch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGA-GE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GA-Gs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++.++||.|| |+ .|..+|+.+++ .|. +++++|+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~-----~G~-------~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALE-----EGA-------RVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 456789999998 43 56566655543 363 47777763
No 378
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=49.21 E-value=20 Score=40.57 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
-.|||+|+|.+|++||..++. .|+ ++.|+|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 469999999999999988865 365 5888888643
No 379
>PRK08219 short chain dehydrogenase; Provisional
Probab=49.17 E-value=79 Score=30.33 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=39.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhh-----cc-ccCCCCCHH
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-----AH-EHEPVKELV 456 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~f-----A~-~~~~~~~L~ 456 (643)
.+++|.|| |..|..+++.+++ . .+++++|++. +.++...+.. -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57888887 5555555555542 1 3588888751 1121111111 11 112224677
Q ss_pred HHHhcc-CCcEEEEccCCC
Q 006498 457 DAVNAI-KPTILIGTSGQG 474 (643)
Q Consensus 457 e~V~~v-kPtvLIG~S~~~ 474 (643)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777665 689999888764
No 380
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=48.90 E-value=39 Score=37.20 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=65.8
Q ss_pred hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCC------ChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccC
Q 006498 377 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM------PLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE 450 (643)
Q Consensus 377 ~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~------s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~ 450 (643)
.+...+-.++++.|+|-||+-.+-.-. ..|. -+-+.++++--.-.+++-.++ + +..--||++..
T Consensus 158 Aagtv~pA~vlv~G~Gvagl~aiata~-----~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~--e---e~~gGYAk~ms 227 (356)
T COG3288 158 AAGTVSPAKVLVIGAGVAGLAAIATAV-----RLGAIVTARDLRMFKKEQVESLGAKFLAVED--E---ESAGGYAKEMS 227 (356)
T ss_pred hcccccchhhhhhhHHHHHHHHHHHHh-----hcceEEehhhhhhHHhhhhhhcccccccccc--c---ccCCCccccCC
Confidence 667778889999999999875432211 1111 000011111111111111110 0 12234555432
Q ss_pred C------CCCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHH
Q 006498 451 P------VKELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAE 509 (643)
Q Consensus 451 ~------~~~L~e~V~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~e 509 (643)
+ .+-+.|.+++ -|++|=+.-.|| +.|+|+|++|. .-.+|.=|+--+ -+||+|-.
T Consensus 228 ~~~~~~q~~~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~p 293 (356)
T COG3288 228 EEFIAKQAELVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTEP 293 (356)
T ss_pred HHHHHHHHHHHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCcccccC
Confidence 2 1236666765 899998776665 68999999997 777898887655 45777643
No 381
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.62 E-value=24 Score=43.56 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC----Cccc
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIV 431 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~----GLv~ 431 (643)
-+++||+|+|||.||+..|..|.. .|. ++.++|+. |++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~-------~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGF-------PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeeCCCCCceEE
Confidence 457999999999999999999875 363 67888875 5554
No 382
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.58 E-value=15 Score=40.36 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+..||||+|+|.||+..|+.|. + ..-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~--------~~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P--------KKYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c--------CCCeEEEEcCC
Confidence 355679999999999998876652 1 12368888865
No 383
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.52 E-value=2.1e+02 Score=34.28 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=54.6
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCC
Q 006498 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFD 528 (643)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~--------aEct~edA~~wT~GraifASGSPF~ 528 (643)
+.=+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-+++.++... ..-.-| ..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~~g--k~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA-LAKKQG--KT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH-HHHHcC--Cc
Confidence 333556899999877753 444444444445566688888998752 23343343332110 000112 23
Q ss_pred CcccCCeeeCcCCCCcccccchhhHHHHHhCCcccCHHHHHHH
Q 006498 529 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 571 (643)
Q Consensus 529 pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laA 571 (643)
||.. ...||..=|-..+|-+--++.+...- ++.+-+-.|
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a 523 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAA 523 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 4433 24566666666666555554444432 344444444
No 384
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=48.45 E-value=21 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999977753 354 57788865
No 385
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=48.44 E-value=20 Score=40.41 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.|++-+|+++|+|..|+-+++.|+.. |+ ++|.++|.+
T Consensus 17 ~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 17 ALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 47789999999999999999999874 76 789999987
No 386
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=13 Score=45.27 Aligned_cols=129 Identities=23% Similarity=0.350 Sum_probs=80.4
Q ss_pred HHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeC
Q 006498 347 KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (643)
Q Consensus 347 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~ 426 (643)
||-.++.||.++-| ++|.++++.++|||+.||-.-+-++.. |+.--+ .+.|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEecc
Confidence 77778888877655 688999999999999998776665442 543211 235777776
Q ss_pred CCcccCCCccCCchhchhhc-ccc----CCCCCHHHHHhccCCcEEEE-------ccCCCCCCCHHHHHHHHcCCCCcEE
Q 006498 427 KGLIVSSRLESLQHFKKPWA-HEH----EPVKELVDAVNAIKPTILIG-------TSGQGRTFTKEVVEAMASLNEKPII 494 (643)
Q Consensus 427 ~GLv~~~R~~~L~~~k~~fA-~~~----~~~~~L~e~V~~vkPtvLIG-------~S~~~g~Fteevv~~Ma~~~erPII 494 (643)
+ +|.++ +|+. .|- |+. .....-.+|+....|++.|= --+ -++|+.+--+.+- =++
T Consensus 468 D-~IEkS---NLnR---QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~Va 534 (1013)
T KOG2012|consen 468 D-HIEKS---NLNR---QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVA 534 (1013)
T ss_pred c-hhhhc---cccc---eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHH
Confidence 6 34443 2442 222 221 11234678999999999873 233 2478777666552 122
Q ss_pred EecCCCCCCCCCCHHHHhcccCCcEEE
Q 006498 495 FSLSNPTSQSECTAEEAYTWSQGRAIF 521 (643)
Q Consensus 495 FaLSNPts~aEct~edA~~wT~Graif 521 (643)
=||=|= ||-.|-|+||+|
T Consensus 535 nALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 535 NALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred Hhhcch---------hhhhhhhhhhhh
Confidence 344442 567777888877
No 387
>PRK09186 flagellin modification protein A; Provisional
Probab=48.35 E-value=27 Score=34.41 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+++.+++|.||+ ..|..+|+.++ + .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~----~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAIL----E-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEEecC
Confidence 467899999984 34444555553 3 353 57777654
No 388
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=48.15 E-value=21 Score=39.35 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.+|++|=||++|||..|--++++|+.. |+ ++|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 467889999999999999999999864 75 78889987654
No 389
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.03 E-value=1.1e+02 Score=31.79 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=53.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhcc
Q 006498 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (643)
Q Consensus 384 ~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (643)
-||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ .-....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888776431 222 3455677752 211111 111 1112367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 496 (643)
+||++|=+|... ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 346666665544 5778855
No 390
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=47.93 E-value=24 Score=37.87 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999977754 365 57777754
No 391
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.77 E-value=91 Score=34.32 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
..++|+|+|.|-.|..+|+.+.+ .|. +++.+|.+- . .+.. ..+..+. ...+..+..+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~- 58 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE- 58 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc-
Confidence 34789999999999888777653 363 588888651 1 1111 1111100 0011222223
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~ 537 (643)
++|++|=..+.. .-.+.+.++..+. -||| +++ |. +-++..+.+.+.|-.||| +|||-
T Consensus 59 -~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 -QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred -CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378899888776 4566676766543 3432 232 11 112222224567888997 67653
No 392
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.72 E-value=23 Score=35.18 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh-c---hhhccccCCCCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-K---KPWAHEHEPVKE 454 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~-k---~~fA~~~~~~~~ 454 (643)
.+.+++++|.|| |.-|..||+.++ + .|. ++.++|++. .+.+.+... . ..+.-+..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~----~-~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYL----A-EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 467889999997 444555555544 3 363 578887641 111111110 0 011112222235
Q ss_pred HHHHHhcc-----CCcEEEEccCCC
Q 006498 455 LVDAVNAI-----KPTILIGTSGQG 474 (643)
Q Consensus 455 L~e~V~~v-----kPtvLIG~S~~~ 474 (643)
+.++++.+ ++|+||=..+..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 66666654 689999776643
No 393
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.52 E-value=22 Score=39.18 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999887652 5 4788999864
No 394
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=47.33 E-value=83 Score=35.74 Aligned_cols=135 Identities=15% Similarity=0.189 Sum_probs=65.6
Q ss_pred HHHHHHHhcCC-CcceeeecCCCCcHHHHHHHHcCCCceeccCCcchHHHHHH----HHHHHHHHhCCCCCCceEEEeCc
Q 006498 317 FMTAVKQNYGE-RILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLA----GLISAMKFLGGSLADQRFLFLGA 391 (643)
Q Consensus 317 fv~av~~~fGp-~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LA----gll~Alr~~g~~L~d~riv~~GA 391 (643)
..+.++++||- -..+.| ++-.+.-+.|++... .|++++...+--+++ -+...+......|++.|++++|.
T Consensus 269 ~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g 343 (466)
T TIGR01282 269 ISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVG 343 (466)
T ss_pred HHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 44455667763 222233 555555555544432 234444322211111 13333444567889999999987
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhc-----cccCCCCCHHHHHhccCCcE
Q 006498 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-----HEHEPVKELVDAVNAIKPTI 466 (643)
Q Consensus 392 GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA-----~~~~~~~~L~e~V~~vkPtv 466 (643)
|+=...++.++ ++.|+.. .++-. .....++.....+... -+..+...|++.++..|||+
T Consensus 344 ~~~~~~~~~~l-----~ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pDl 407 (466)
T TIGR01282 344 GLRPRHVIGAF-----EDLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPDL 407 (466)
T ss_pred CCcHHHHHHHH-----HHCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCCE
Confidence 76666666643 2458732 11110 0000111111111111 01122236888899999999
Q ss_pred EEEccC
Q 006498 467 LIGTSG 472 (643)
Q Consensus 467 LIG~S~ 472 (643)
|||-|-
T Consensus 408 ~ig~~~ 413 (466)
T TIGR01282 408 VGSGIK 413 (466)
T ss_pred EEecCC
Confidence 998664
No 395
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=47.02 E-value=25 Score=37.94 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 4579999999999999888765 364 57778876
No 396
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=46.93 E-value=66 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++-||.|+|+|.-|..|+..|... |.- ..+++|.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCC
Confidence 456899999999999999988753 321 12468888864
No 397
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=46.92 E-value=23 Score=39.15 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 478999999999999988764
No 398
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=46.90 E-value=27 Score=39.16 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=31.8
Q ss_pred CcEEEeeCCC-------CCCc-ccCCeeeCcCCCCcccccchhhHHHHHhCCcc
Q 006498 517 GRAIFASGSP-------FDPF-EYGDNVFVPGQANNAYIFPGLGLGLIMSGAIR 562 (643)
Q Consensus 517 GraifASGSP-------F~pV-~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~ 562 (643)
=.+|+|||-= |+-. +++|+.+++.|=-|..-|.|==-++|=++++-
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 3578899851 2222 24789999999999999988555555555554
No 399
>PLN02427 UDP-apiose/xylose synthase
Probab=46.82 E-value=68 Score=34.39 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchh-------chhh
Q 006498 374 MKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-------KKPW 445 (643)
Q Consensus 374 lr~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~-------k~~f 445 (643)
+.+.|++++-.||+|.|| |-.|.-+++.|+.. .| .+++.+|+.. .+...+.+. ...|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 457899999999999996 99898888887652 12 3678888641 110111100 1112
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006498 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQG 474 (643)
Q Consensus 446 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (643)
.+ +-.+...+.++++. +|++|=+.+..
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~~ 97 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAIC 97 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEccccc
Confidence 21 11222457778875 89999777643
No 400
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=46.75 E-value=26 Score=36.88 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=27.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
...|+|+|||-+|+.+|-.|.+ .| .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-----~g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-----RG-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecccC
Confidence 3569999999999999977765 25 47889997643
No 401
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=46.52 E-value=19 Score=38.61 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=49.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccC----CCCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE----PVKE 454 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~----~~~~ 454 (643)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|+ ..|-...+ ....
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 468889999999999999999999775 76 78999998732 221 132 22222111 1134
Q ss_pred HHHHHhccCCcEEEE
Q 006498 455 LVDAVNAIKPTILIG 469 (643)
Q Consensus 455 L~e~V~~vkPtvLIG 469 (643)
..+-++.+.|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 667777788888873
No 402
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=46.50 E-value=17 Score=33.65 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=25.5
Q ss_pred CchhhhHHHHHHHHHHHHH---hcCCCcceeeecC
Q 006498 305 AIGQEYAELLHEFMTAVKQ---NYGERILIQFEDF 336 (643)
Q Consensus 305 ~~geeY~~fidefv~av~~---~fGp~~lIqfEDf 336 (643)
.+.++||.|+|+|++.|.+ .||.....+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998887 5666656677765
No 403
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=46.48 E-value=30 Score=36.30 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH--HhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEIS--KQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~--~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..||+++|+|.-|.-+++.|+.... +.-|.+ .--+|.++|.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCC
Confidence 46899999999999999999987511 001210 00289999987
No 404
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=46.43 E-value=21 Score=37.75 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.4
Q ss_pred EEEeCcchHHHHHHHHHHH
Q 006498 386 FLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~ 404 (643)
|+|+|||.||+..|-.|.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSR 20 (382)
T ss_pred EEEECccHHHHHHHHHHhc
Confidence 7999999999999998875
No 405
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=46.35 E-value=99 Score=29.74 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=59.9
Q ss_pred eeecCCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHH
Q 006498 244 RILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQ 323 (643)
Q Consensus 244 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~ 323 (643)
||||+ |.|....|..+-.. ..--+-.+|.|+=+. ..+....+....+.+++.+ +-.
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l~~-~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGLNE-VID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHHHH-HHH
Confidence 56766 67776555554322 012355667765221 1122234445554444444 445
Q ss_pred hcCCCcceeeec-CCCCcHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCCC-----CceEEEeCcchHHH
Q 006498 324 NYGERILIQFED-FANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLA-----DQRFLFLGAGEAGT 396 (643)
Q Consensus 324 ~fGp~~lIqfED-f~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~-----d~riv~~GAGsAG~ 396 (643)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. .-|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 566888 334442222110 1134556666777777754 45777889998875
No 406
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=46.24 E-value=31 Score=28.73 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.7
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 388 ~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
|+|||.+|+..|-.|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999888652 4 489999987443
No 407
>PLN02463 lycopene beta cyclase
Probab=46.18 E-value=23 Score=39.88 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999988753 364 57788875
No 408
>PRK08013 oxidoreductase; Provisional
Probab=46.18 E-value=26 Score=37.90 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=25.3
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999877654 365 56677765
No 409
>PLN02676 polyamine oxidase
Probab=46.17 E-value=55 Score=37.11 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~ 404 (643)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35679999999999999998875
No 410
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=46.10 E-value=26 Score=38.73 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 25 468888875
No 411
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=46.00 E-value=32 Score=37.43 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCccc
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~ 431 (643)
|+|+|||.||+.+|-.+.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 78999999999999777643 124 3577888765433
No 412
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=45.94 E-value=24 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977653 364 588888863
No 413
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=45.93 E-value=23 Score=41.48 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC-cccCCCccCCc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQ 439 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G-Lv~~~R~~~L~ 439 (643)
++..|+|+|||.||+..|-.|+.. .|+ ++.++|++- ....+|...|+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCeeeEEC
Confidence 456899999999999999888641 265 477888763 33334433333
No 414
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.84 E-value=27 Score=38.67 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999998887753 25 368888875
No 415
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=45.77 E-value=33 Score=36.90 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888652 242 47889998643
No 416
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=45.59 E-value=26 Score=43.62 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=28.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-+.+||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 457899999999999999999865 253 57888865
No 417
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=45.54 E-value=32 Score=36.07 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
+--++|+|||+||+..|..|++. |+ ++.+++++=-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 45689999999999999888764 64 68888887333
No 418
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.54 E-value=34 Score=39.25 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=48.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc---cCCCCC
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKE 454 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~---~~~~~~ 454 (643)
...|...|++|+|-++-..|+++.+... .|+. +..++.. .....+.+.+.-+.+..+ .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3678899999999999999999998765 3873 2233321 110000011111111110 122245
Q ss_pred HHHHHhccCCcEEEEcc
Q 006498 455 LVDAVNAIKPTILIGTS 471 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S 471 (643)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 78889999999999966
No 419
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=45.43 E-value=1e+02 Score=32.33 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc-cCCCccCCch------hchhhcc-ccC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQH------FKKPWAH-EHE 450 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv-~~~R~~~L~~------~k~~fA~-~~~ 450 (643)
+++..+++|.|| |-.|..+++.|+. .|. +++.+|+..-- ...+-..+.. .+..|.. +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 567789999996 8888888887764 253 57777764210 0000001100 0111111 222
Q ss_pred CCCCHHHHHhccCCcEEEEccCC
Q 006498 451 PVKELVDAVNAIKPTILIGTSGQ 473 (643)
Q Consensus 451 ~~~~L~e~V~~vkPtvLIG~S~~ 473 (643)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 33467888988899999988775
No 420
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.32 E-value=32 Score=40.93 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 34678999999999999999988653 53 68889874
No 421
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.25 E-value=50 Score=34.65 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|+|..|-.+|.-|+. .|.- ...+|+++|+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r~ 38 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDLN 38 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECCC
Confidence 379999999999999988864 2531 23578888863
No 422
>PRK10262 thioredoxin reductase; Provisional
Probab=44.99 E-value=22 Score=37.08 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 006498 381 LADQRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~ 404 (643)
-+..+|||+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988865
No 423
>PRK08244 hypothetical protein; Provisional
Probab=44.96 E-value=26 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 569999999999999988864 365 45666654
No 424
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=44.88 E-value=28 Score=36.13 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
.+-.++|+|||.||+..|-.+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999887754 25 468888887543
No 425
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=44.88 E-value=27 Score=39.99 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=27.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+-.|+|+|+|..|++||..++. .|+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3569999999999999998875 364 68888875
No 426
>PRK07478 short chain dehydrogenase; Provisional
Probab=44.85 E-value=72 Score=31.61 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++.++||.||+. .|..+|+.+ .+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l----~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLF----AR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 46778999999753 344444444 43 363 68888764
No 427
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=44.84 E-value=28 Score=36.67 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
.|+|+|||.+|+.+|-.|++ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988764 25 36888888654
No 428
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=44.75 E-value=1.6e+02 Score=30.77 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.2
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
+.+.++. .|++|-.|... .|.--++++|+ +..|+|.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 4555665 78999887754 58999999999 6789987
No 429
>PRK07890 short chain dehydrogenase; Provisional
Probab=44.64 E-value=70 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
|++++++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999854 455555555554 363 68888864
No 430
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=44.59 E-value=39 Score=36.13 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTS 502 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPts 502 (643)
+-|++||+|..|. |+++++.+.... .-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999885 999999885433 3477776677763
No 431
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=44.43 E-value=25 Score=37.51 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=26.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877753 364 68888876
No 432
>PRK07588 hypothetical protein; Provisional
Probab=44.43 E-value=28 Score=37.28 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988764
No 433
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=44.34 E-value=68 Score=39.13 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=66.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc--cCCCCCHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELV 456 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~---m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~--~~~~~~L~ 456 (643)
+..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|++|.+.+.+.-++..+...|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999763 223334421 113457999888776632233333333322 12334567
Q ss_pred HHHhccCCc--EEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 457 DAVNAIKPT--ILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 457 e~V~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
|.+....++ |+|=+++.. -....+.+++. +...+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777766665 899888733 34556677776 4556665
No 434
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=44.16 E-value=26 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=24.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999977764 364 567777764
No 435
>PRK06185 hypothetical protein; Provisional
Probab=44.11 E-value=27 Score=37.37 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877653 365 577888764
No 436
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=44.02 E-value=34 Score=36.23 Aligned_cols=145 Identities=20% Similarity=0.267 Sum_probs=84.3
Q ss_pred hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCC-CCH
Q 006498 377 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KEL 455 (643)
Q Consensus 377 ~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~-~~L 455 (643)
-|..++ ++||+||=--|.+||+.|... + +|+++|.+ +|-+.+-.+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 899999999999999988532 2 79999975 1222221110000 011
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCe
Q 006498 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDN 535 (643)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk 535 (643)
.+ ..++||++|=++|-||+ +++.++.. + |=+|=.=||. ++-.=...++.. ..
T Consensus 91 ~~--~~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~--~~~sD~~I~~~~------------------nt 142 (252)
T PF06690_consen 91 NG--LEGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK--GDGSDKTIYEIN------------------NT 142 (252)
T ss_pred CC--CCCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC--ccCcchhhhhcc------------------cH
Confidence 11 12479999999999996 88888765 3 6677778888 444333333321 11
Q ss_pred eeCcC--CCCcccccchh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 006498 536 VFVPG--QANNAYIFPGL--GLGLIMSGAIRVHDDMLLAAAEALA 576 (643)
Q Consensus 536 ~~~p~--Q~NN~yiFPGi--glG~l~s~a~~Itd~M~laAA~aLA 576 (643)
.-.+. -+.+..+.=-. |+.+=.||--.+|=+.+..|+..+=
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 12223333333 5555667777788787777666553
No 437
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=43.90 E-value=62 Score=34.08 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 006498 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 458 (643)
Q Consensus 381 L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~-~~~~~~~L~e~ 458 (643)
+++.+++|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999986 77777777776542 31 136888876522100000001000111111 22223457777
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 006498 459 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 498 (643)
Q Consensus 459 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 498 (643)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 235667776665567888544
No 438
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.82 E-value=36 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-..++|||+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999999888864 24 478889986
No 439
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=43.79 E-value=49 Score=34.33 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999864 242 56777764
No 440
>PRK12831 putative oxidoreductase; Provisional
Probab=43.68 E-value=31 Score=38.74 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3567999999999999999888752 5 367888864
No 441
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=43.66 E-value=63 Score=33.63 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=50.6
Q ss_pred CceEEEeCcchHHHHHHHH-HHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhc
Q 006498 383 DQRFLFLGAGEAGTGIAEL-IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~l-i~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (643)
.-|+.|+|+| +|+.. .+.++.+..+. ..-+.++|++ . +....+.+.|--. .-..++.|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 44433 23333221110 1234455553 1 1133333333322 345789999999
Q ss_pred cCCcEEEEccCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 006498 462 IKPTILIGTSGQGRTFTKEVVEA-MAS----LNEKPIIF 495 (643)
Q Consensus 462 vkPtvLIG~S~~~g~Fteevv~~-Ma~----~~erPIIF 495 (643)
-++|+++ +.+.. .+..|++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7788877 44433 566666644 432 56788654
No 442
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.51 E-value=26 Score=39.44 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
..|||+|+|.+|+++|..+.. .|+ ++.|++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 579999999999999999875 365 588999773
No 443
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=43.46 E-value=31 Score=37.14 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=25.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcC
Confidence 3679999999999999987764 365 35566655
No 444
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=43.39 E-value=29 Score=38.35 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888865 35 478899975
No 445
>PRK13937 phosphoheptose isomerase; Provisional
Probab=43.36 E-value=71 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006498 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (643)
Q Consensus 463 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (643)
+-|++|++|..|. |+++++.+. +.+.-|+|.=-+||.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4699999999874 999998875 333344444333343
No 446
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=43.35 E-value=44 Score=35.71 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=65.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
+||.++|-|..|-.|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987532 11 1123345555531 11 1123322344578888653 47
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIF---SLSNPTSQSECTAEEAYTWSQGRAIFASG 524 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF---aLSNPts~aEct~edA~~wT~GraifASG 524 (643)
||+++=+.++. ++.+-..+.+.+ ...=+|+ ||+++. =+-.-.++-+-.+++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988864 444444444432 2222332 244444 222233444445678888887
No 447
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.29 E-value=23 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999988754 364 57778875
No 448
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=43.25 E-value=1.2e+02 Score=31.98 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=50.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... .. + .. + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~~---~------~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------GD---L------GM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------cc---c------cc----C--CC
Confidence 6999999997776 77777666654 34 3444433221100 00 0 00 1 14
Q ss_pred CcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 501 (643)
-|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999874 889988874 444557766555555
No 449
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=43.02 E-value=2.2e+02 Score=28.88 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=28.2
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006498 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (643)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 495 (643)
.+.+.++. .|++|..|... .|.--++++|+ ...|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 35566665 78999888765 47888999999 5778885
No 450
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=42.91 E-value=24 Score=39.62 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=28.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 3589999999999999998886532 1 2368899985
No 451
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=42.57 E-value=1.4e+02 Score=32.70 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=59.5
Q ss_pred HhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCC--ccCCch-h-chhhcc-cc
Q 006498 376 FLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--LESLQH-F-KKPWAH-EH 449 (643)
Q Consensus 376 ~~g~~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R--~~~L~~-~-k~~fA~-~~ 449 (643)
..++..+++||+|.|| |-.|..+++.|+. .|. +++.++++.--.... ...+.. . ...+.. +-
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3456678899999997 8888888888764 253 577777653100000 000000 0 011111 22
Q ss_pred CCCCCHHHHHhcc--CCcEEEEccCCC--C---CC------CHHHHHHHHcCCCCcEEEe
Q 006498 450 EPVKELVDAVNAI--KPTILIGTSGQG--R---TF------TKEVVEAMASLNEKPIIFS 496 (643)
Q Consensus 450 ~~~~~L~e~V~~v--kPtvLIG~S~~~--g---~F------teevv~~Ma~~~erPIIFa 496 (643)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2234677788765 699998544321 1 11 3467777766554556663
No 452
>PRK14852 hypothetical protein; Provisional
Probab=42.45 E-value=24 Score=43.74 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999888764 76 799999987
No 453
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.43 E-value=62 Score=36.07 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhch-----h
Q 006498 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-----P 444 (643)
Q Consensus 370 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~-----~ 444 (643)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++ .
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455566667888999999998776555666533 3458732 211 0000000 00111110 1
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccC
Q 006498 445 WAHEHEPVKELVDAVNAIKPTILIGTSG 472 (643)
Q Consensus 445 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (643)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1111122346888999999999999765
No 454
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=42.42 E-value=31 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977653 365 57778874
No 455
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.42 E-value=34 Score=40.23 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
...||+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999988864 253 57778765
No 456
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=42.41 E-value=33 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 35799999999999999887652 5 579999975
No 457
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.31 E-value=31 Score=37.85 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~ 426 (643)
.+||+|||.||+..|..+.. .| .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~-----~G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ-----LG-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEec
Confidence 58999999999999988864 25 47889998
No 458
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=42.30 E-value=33 Score=40.10 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999988864 363 699999874
No 459
>PRK07538 hypothetical protein; Provisional
Probab=42.28 E-value=30 Score=37.48 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999988877654
No 460
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.27 E-value=66 Score=38.00 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=50.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHHHhccC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (643)
+||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988642 53 2468888874 111 111110 10000122356666653
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 006498 464 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLS 498 (643)
Q Consensus 464 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLS 498 (643)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66665 33333 34567777666432 233444343
No 461
>PRK06834 hypothetical protein; Provisional
Probab=42.18 E-value=33 Score=38.72 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
.+..|+|+|||.+|+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 46789999999999999988865 375 577888764
No 462
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=42.06 E-value=30 Score=43.11 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..++|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999998865 353 58888865
No 463
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=42.03 E-value=33 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|+|+|||-+|+.+|-.+.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988764 24 368888885
No 464
>PRK14694 putative mercuric reductase; Provisional
Probab=42.00 E-value=34 Score=38.01 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888753 5 478899975
No 465
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=41.83 E-value=32 Score=38.12 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988865 25 479999975
No 466
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=41.66 E-value=35 Score=37.53 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+-.+||+|||.||+..|..+.+ .| +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAK-----LG-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 3469999999999999987764 25 478889983
No 467
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.62 E-value=81 Score=31.21 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 378 g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..++++.+++|.||++ ||...++..+.+ .|. +++++|+.
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999743 355555555544 363 68989885
No 468
>PRK06398 aldose dehydrogenase; Validated
Probab=41.62 E-value=1.7e+02 Score=29.47 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=39.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 458 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~-~~~~~~~L~e~ 458 (643)
+|++++++|.||.+ ||...++..+.+ .|. +++++|++- .+ .. +..+.+ +..+..++.++
T Consensus 3 ~l~gk~vlItGas~---gIG~~ia~~l~~-~G~-------~Vi~~~r~~----~~---~~--~~~~~~~D~~~~~~i~~~ 62 (258)
T PRK06398 3 GLKDKVAIVTGGSQ---GIGKAVVNRLKE-EGS-------NVINFDIKE----PS---YN--DVDYFKVDVSNKEQVIKG 62 (258)
T ss_pred CCCCCEEEEECCCc---hHHHHHHHHHHH-CCC-------eEEEEeCCc----cc---cC--ceEEEEccCCCHHHHHHH
Confidence 47788999999642 333444444443 353 678777641 11 11 111111 22222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 006498 459 VNAI-----KPTILIGTSGQ 473 (643)
Q Consensus 459 V~~v-----kPtvLIG~S~~ 473 (643)
++.+ ++|+||=..+.
T Consensus 63 ~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 63 IDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 5543 68999976654
No 469
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=41.57 E-value=1.5e+02 Score=31.41 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-.+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak-~----~G~------~~vi~~~~~ 221 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGAR-I----RGA------SRIIGVDLN 221 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcCC
Confidence 45789999999877766544432 2 353 467777653
No 470
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.09 E-value=36 Score=38.43 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
...+++|+|||.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 45799999999999999988864 253 58888865
No 471
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=41.04 E-value=32 Score=39.61 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.||.|+|||.+|+..|+.+.+. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 472
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=41.02 E-value=35 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++.++||.||++ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36778999999753 344445555444 363 58888874
No 473
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=40.96 E-value=75 Score=31.22 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=86.8
Q ss_pred hhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecC--ceeecCCCCCCc--ccccchhhhhhHhhhcCCCCCceeee
Q 006498 205 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG--ERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPV 280 (643)
Q Consensus 205 i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 280 (643)
+-+++.|+-++.-|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46679999999999988888888888888988887555 111222223333 36666777776666654 444
Q ss_pred eecCCCCcccccCCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccee---eecCCCCcHHHHHHHHcCCCceecc
Q 006498 281 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQ---FEDFANHNAFDLLEKYGTTHLVFND 357 (643)
Q Consensus 281 ~LDvGTnNe~LL~DplYlGlr~~R~~geeY~~fidefv~av~~~fGp~~lIq---fEDf~~~nAf~lL~ryr~~~~~FND 357 (643)
++=.|.. ......+.++-|.+++++ ++.-.++. +.++....+.+.++++-..++ -|
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 4333321 112333557788888888 64322222 236777777765555533221 11
Q ss_pred CCcchHHHHHHHHHHHHHHhCC
Q 006498 358 DIQGTASVVLAGLISAMKFLGG 379 (643)
Q Consensus 358 DiQGTaaV~LAgll~Alr~~g~ 379 (643)
=|=.+....+-|++.|++-.|+
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCChHHHHHHHHHHHcCC
Confidence 1112223344477888888887
No 474
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=40.84 E-value=35 Score=31.95 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHH
Q 006498 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMA 486 (643)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma 486 (643)
+.+..+.-+-|+||+.|+.|. |+-+|+++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999987 788888874
No 475
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=40.73 E-value=33 Score=36.54 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCc
Q 006498 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (643)
Q Consensus 383 d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GL 429 (643)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.--
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCCC
Confidence 4579999999999999977653 364 5888888643
No 476
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=40.63 E-value=31 Score=39.54 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
.+||+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987764 24 3688888653
No 477
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=40.54 E-value=65 Score=35.58 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=29.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~ 48 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRP 48 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECc
Confidence 357899999999999999999998653 65 46666653
No 478
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=40.50 E-value=1.9e+02 Score=31.81 Aligned_cols=131 Identities=12% Similarity=0.199 Sum_probs=79.2
Q ss_pred HhcCCCcceeeecCCCCcHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCcchHHHHHHH
Q 006498 323 QNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIAE 400 (643)
Q Consensus 323 ~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g-~~L~d~riv~~GAGsAG~GIA~ 400 (643)
.+| .++++ +-.+. +-+.+.+.+| .++||+|- |-..=-.=+||=++.-.+..| +++++.+|.++|-+.- ++++
T Consensus 98 s~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~ 171 (336)
T PRK03515 98 GRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGN 171 (336)
T ss_pred HHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHH
Confidence 456 44433 33332 2334444444 47899993 222233456777777777776 4799999999998632 4777
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccc-c---CCCCCHHHHHhccCCcEEEEccC
Q 006498 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIGTSG 472 (643)
Q Consensus 401 li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S~ 472 (643)
-++.+..+ .|+ ++.++-.+|+.-.. + +-..-+.+++. . .-..++.|+++. .||+.-.+=
T Consensus 172 Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~W 234 (336)
T PRK03515 172 SLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDVW 234 (336)
T ss_pred HHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecCc
Confidence 77776655 465 68888888774321 1 11112233332 1 123689999997 999997643
No 479
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=40.49 E-value=28 Score=37.05 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
+|+|+|||.||+..|-.|.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988764
No 480
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.47 E-value=40 Score=33.89 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+++++++||.||.+ ||...|+..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47789999999743 455555555544 363 68888774
No 481
>PRK07774 short chain dehydrogenase; Provisional
Probab=40.45 E-value=49 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
++++.++||.|| |..|..+|+.++ + .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~----~-~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALA----R-EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEEeCC
Confidence 467788999997 555555555443 3 35 368888774
No 482
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=40.32 E-value=83 Score=36.26 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=63.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhcccc-C---CCCCHHHHHh
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAVN 460 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~-~---~~~~L~e~V~ 460 (643)
+|=|+|-|..|.++|.-|+. .|. ++++.|+. .++ .+++...++... . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~-----~G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAE-----KGF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHh-----CCC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 68999999999999999975 364 67777763 222 223322222211 1 3468999997
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 006498 461 AI-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (643)
Q Consensus 461 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 501 (643)
.+ +|+++| ++=..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 65 588888 444455566677655443 34677999999854
No 483
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=40.31 E-value=1e+02 Score=29.78 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 381 L~d~riv~~GA-GsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+.+.++||.|| |..|..+++.+++ .|. ++++++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~-----~g~-------~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAA-----DGA-------KVVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 45678999997 5555556555543 353 48888775
No 484
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=40.27 E-value=37 Score=33.97 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 380 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 380 ~L~d~riv~~GAG-sAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|++.++||.||+ -.|..+|+.++ + .|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFV----A-EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 3678899999974 34555555554 3 363 67888764
No 485
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=40.25 E-value=38 Score=36.51 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899986
No 486
>PRK11445 putative oxidoreductase; Provisional
Probab=40.21 E-value=34 Score=36.44 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 006498 385 RFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~ 404 (643)
.|+|+|||.||...|-.|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987753
No 487
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=40.02 E-value=1.8e+02 Score=28.56 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 006498 380 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (643)
Q Consensus 380 ~L~d~riv~~GAGs-AG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (643)
.+++.+++|.||++ .|..+|+.++ + .|. +++++|++-+ ......+.. +.-+..+..++.++
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~----~-~G~-------~v~~~~~~~~--~~~~~~~~~----~~~D~~~~~~~~~~ 66 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFV----E-AGA-------KVIGFDQAFL--TQEDYPFAT----FVLDVSDAAAVAQV 66 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-CCC-------EEEEEecchh--hhcCCceEE----EEecCCCHHHHHHH
Confidence 47788999999854 5555555553 3 353 6778887641 111111111 11121222344444
Q ss_pred Hhcc-----CCcEEEEccCCC
Q 006498 459 VNAI-----KPTILIGTSGQG 474 (643)
Q Consensus 459 V~~v-----kPtvLIG~S~~~ 474 (643)
++.+ ++|++|-..+..
T Consensus 67 ~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 67 CQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 4432 479999887653
No 488
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=39.91 E-value=14 Score=38.02 Aligned_cols=26 Identities=46% Similarity=0.804 Sum_probs=18.9
Q ss_pred EEEEecCceeecCCCCCCcccccchhhhh
Q 006498 236 VIVVTDGERILGLGDLGCHGMGIPVGKLS 264 (643)
Q Consensus 236 viVVTDG~rILGLGDlG~~GmgI~iGKl~ 264 (643)
++|||||+|||-.--.| -.|||-|.-
T Consensus 51 ~fi~TDg~~IlavDt~g---y~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTIG---YKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEecC---CCceeeecc
Confidence 89999999999755444 356666654
No 489
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.89 E-value=36 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999888652 4 468999975
No 490
>PRK05868 hypothetical protein; Validated
Probab=39.84 E-value=36 Score=36.73 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIAL 404 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~ 404 (643)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999877654
No 491
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.79 E-value=38 Score=38.82 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+++++|.|..|..+|+.+.+ .| .++.++|++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~-----~g-------~~vvvId~d 449 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA-----AG-------IPLVVIETS 449 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH-----CC-------CCEEEEECC
Confidence 678899999999999998854 24 468899986
No 492
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.75 E-value=30 Score=38.52 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCc--cCCchhchhh-----
Q 006498 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL--ESLQHFKKPW----- 445 (643)
Q Consensus 373 Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~--~~L~~~k~~f----- 445 (643)
++.-....|+.+|+.++|-..-.+++++.|.+ .|+.... .+.+. .+.. +.+....+.+
T Consensus 293 ~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-----~~~~~-----~~~~~~~~~~~~l~~~~~~~~ 357 (435)
T cd01974 293 AMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-----VLTGN-----GGKRFEKEMQALLDASPYGAG 357 (435)
T ss_pred HHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE-----EEeCC-----CCHHHHHHHHHHHhhcCCCCC
Confidence 33334456788999999988889999998874 3873211 11211 1110 0011111110
Q ss_pred --ccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006498 446 --AHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (643)
Q Consensus 446 --A~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 501 (643)
.....+...+++.++..+||++||-|.. +.+|+...-|.| ..+.|.
T Consensus 358 ~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 358 AKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred cEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 1111223457888899999999997641 234433356653 555565
No 493
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=39.72 E-value=38 Score=38.24 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCC
Q 006498 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (643)
Q Consensus 381 L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~G 428 (643)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5899999999999999999888653 26788877654
No 494
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.56 E-value=82 Score=30.64 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 370 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
.+.++...+.-..++++++.|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 33445555554578999999999866665544422 34 367777664
No 495
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.50 E-value=70 Score=34.34 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 006498 384 QRFLFLGAGEAGTGIAELIALE 405 (643)
Q Consensus 384 ~riv~~GAGsAG~GIA~li~~~ 405 (643)
.||.|+|||+.|.-.|-.|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 3899999999999888877654
No 496
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=39.45 E-value=1.6e+02 Score=29.31 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhch-hhccccCCCCCHHHH
Q 006498 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-PWAHEHEPVKELVDA 458 (643)
Q Consensus 380 ~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~-~fA~~~~~~~~L~e~ 458 (643)
.|++.++||.||++ ||...++..+.+ .|. +++++|++.- + +...+. .+.-+..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G~-------~v~~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NGA-------NVVNADIHGG----D---GQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCCcc----c---cccCceEEEEccCCCHHHHHHH
Confidence 46788999999653 455555555554 363 6777776521 1 111111 111122222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 006498 459 VNAI-----KPTILIGTSGQ 473 (643)
Q Consensus 459 V~~v-----kPtvLIG~S~~ 473 (643)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5544 67999977664
No 497
>PLN02568 polyamine oxidase
Probab=39.45 E-value=19 Score=41.45 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 006498 382 ADQRFLFLGAGEAGTGIAELIALE 405 (643)
Q Consensus 382 ~d~riv~~GAGsAG~GIA~li~~~ 405 (643)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 456899999999999999999764
No 498
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.39 E-value=37 Score=37.56 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcc
Q 006498 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (643)
Q Consensus 386 iv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv 430 (643)
|||+|+|.||+.-|-..+. .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999988876654 36 378999998865
No 499
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.33 E-value=1.1e+02 Score=33.92 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCCCcccCCCccCCchhchh----hccc---cCC
Q 006498 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----WAHE---HEP 451 (643)
Q Consensus 379 ~~L~d~riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~GLv~~~R~~~L~~~k~~----fA~~---~~~ 451 (643)
..|.+.|++++|-+.-..++++.|.+. .|+.. .. ..+.... ..++.+. +... ..+
T Consensus 297 ~~l~gkrv~i~g~~~~~~~l~~~L~~e----lG~~v-------v~-----~~~~~~~--~~~~~~~~~~~~~~~~~i~~D 358 (430)
T cd01981 297 QNLTGKRAFVFGDATHVAAATRILARE----MGFRV-------VG-----AGTYCKE--DAKWFREQATGYCDEALITDD 358 (430)
T ss_pred ccccCCeEEEEcChHHHHHHHHHHHHH----cCCEE-------Ee-----ccCCCcc--HHHHHHHHHHhcCCceEEecC
Confidence 457789999999888889999888754 37631 11 1111111 1111111 1110 112
Q ss_pred CCCHHHHHhccCCcEEEEcc
Q 006498 452 VKELVDAVNAIKPTILIGTS 471 (643)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S 471 (643)
...+.+.++..+||++||.|
T Consensus 359 ~~e~~~~i~~~~pdliig~~ 378 (430)
T cd01981 359 HTEVGDMIARTEPELIFGTQ 378 (430)
T ss_pred HHHHHHHHHhhCCCEEEecc
Confidence 23477888999999999965
No 500
>PRK09897 hypothetical protein; Provisional
Probab=39.27 E-value=40 Score=39.07 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEeCC
Q 006498 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (643)
Q Consensus 385 riv~~GAGsAG~GIA~li~~~m~~~~G~s~eeAr~~i~lvD~~ 427 (643)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999752 2 12479999984
Done!