BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006499
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 62/364 (17%)
Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303
L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197
Query: 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363
+ A+IS +TI+ NC+SLV + V + I +LV ++ C
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSV------KVGDFEILELVGFFKAAANLEEFCGG 251
Query: 364 SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLG-------------SFCLRLEEID 410
S+ +D + + + N++ + L +LG F ++ ++D
Sbjct: 252 SLNED------------IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299
Query: 411 LTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS---G 467
L + + +C L L+ I D+GL +A C +++ L + + + G
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQG 357
Query: 468 IGDD-------GLAALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGL--- 516
+ D+ GL AL+ GC++L+ + + Y ++T+ +E I ++++L D L L
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDRE 416
Query: 517 TKIT----SAGLTALAAGCKRLADLDLK-HCAKIDDSGFWALAYYSQNLRQINLSYCALS 571
+IT G+ +L GCK+L + D G + YS N+R + L Y S
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476
Query: 572 DMAL 575
D L
Sbjct: 477 DEGL 480
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 115/525 (21%), Positives = 199/525 (37%), Gaps = 89/525 (16%)
Query: 12 EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR--TTLRVLRVEFLFILLDKYPYIKT 69
+D++ +V I D D + LVC+ + ++DS TR T+ + L ++P +++
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 70 LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDL 129
L L PR + + + + +W + + S LR R ++ +DL
Sbjct: 78 LKLKGKPR------AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDL 129
Query: 130 SYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSL--------- 180
DR A A A L+ +KLDKC T GL I C ++ L +
Sbjct: 130 -------DRLAKAR--ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180
Query: 181 -KWCMEISDLGIXXXXXXXXXXXXXXVSYLKLTN-----DSFCSIATLAKLESLVMVGCP 234
KW E++ +S L S S+ + E L +VG
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK-VGDFEILELVGFF 239
Query: 235 CVDDTGLRF------LESGCP--LLKTIFVSR-CK----FVSSTGLISVIRGHSGLLQLD 281
F + G P + +F + C+ ++ + + + + +LD
Sbjct: 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299
Query: 282 AGHCFSELST--TLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLV---------E 330
+ E TL+ +L+ LE + I D + ++ CK L E
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADE 355
Query: 331 IGLSKCLG-VTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389
G+ G V+ G+ L GC L+ + + IT++++ +I + L ++ +
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLD 414
Query: 390 MITEKGLYQLGSFCLRLEEI-DLTDCNGVND--KGLEYLSRCSELLFLKLGLCENISDKG 446
R E I DL NGV G + L R + +L+ G ++D G
Sbjct: 415 ---------------REERITDLPLDNGVRSLLIGCKKLRRFA--FYLRQG---GLTDLG 454
Query: 447 LFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYC 491
L YI ++ + L G D+GL S GC L+KL + C
Sbjct: 455 LSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 26/249 (10%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
LE I + ++D C + I+ + K+ + LS C G + G+ + + C NLK +DL
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-- 164
Query: 363 HSITDDA----ISAIADSCRGLVCLKIESC--NMITEKGLYQLGSFCLRLEEIDLTDCNG 416
S DD +S D+ LV L I SC + ++ L +L + C L+ + L
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNI-SCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223
Query: 417 VNDKGLEYLSRCSELLFLKLG--LCENISD--KGLFYIASNCLRIQGLDLYKCSGIGD-- 470
+ +K L R +L L G E D GL S C ++ L SG D
Sbjct: 224 L-EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL-----SGFWDAV 277
Query: 471 -DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLE-LRGLTKITSAGLTALA 528
L A+ + C +L LNLSY T + + ++ + L+ L L I AGL LA
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSY---ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334
Query: 529 AGCKRLADL 537
+ CK L +L
Sbjct: 335 STCKDLREL 343
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 126/598 (21%), Positives = 238/598 (39%), Gaps = 93/598 (15%)
Query: 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFL--FILLDKYPYI 67
E++L V I + D + LVCK + ++ R + + + ++ ++P +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 68 KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
++++L P D +L+ G Y +E ++ + LE +
Sbjct: 69 RSVELKGKPHFADF------------------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 128 DLSYCCGFGD-REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEI 186
L D E A SF + K + L C + GLA IA C NL+ L L+ ++
Sbjct: 111 RLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DV 168
Query: 187 SDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPC--VDDTGLRFL 244
D+ +L D++ S+ +L + C V + L L
Sbjct: 169 DDVS---------------GHWLSHFPDTYTSLVSLN-------ISCLASEVSFSALERL 206
Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM------- 297
+ CP LK++ ++R V L ++++ L +L G +E+ + +
Sbjct: 207 VTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357
++L+ L D + + C L + LS V + + +L+ C L+
Sbjct: 265 KELRCLSGF-WDAV---PAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQR- 318
Query: 358 DLTCCHSITDDAISAIADSCRGLVCLKI--------ESCNMITEKGLYQLGSFCLRLEEI 409
L I D + +A +C+ L L++ E +TE+GL + C +LE +
Sbjct: 319 -LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
Query: 410 DLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIG 469
L C + + L ++R + + LC I K A + L ++ LD+
Sbjct: 378 -LYFCRQMTNAALITIARNRPNM-TRFRLC-IIEPK-----APDYLTLEPLDI------- 422
Query: 470 DDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAA 529
G A+ CK L++L+LS +TD+ E+I ++ + G+ + +
Sbjct: 423 --GFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478
Query: 530 GCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGN-MTRLQ 586
GC L L+++ C D A A + +R + +S C++S C ++G M +L
Sbjct: 479 GCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVS-FGACKLLGQKMPKLN 534
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 473 LAALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGLTKITSAGLTALAAGC 531
+ A+S+ L+++ L V VTD +E I + ++ L L ++ GL A+AA C
Sbjct: 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 532 KRLADLDLKHCAKIDDSGFWALAYYSQ---NLRQINLSYCALSDMALCMVMGNMTRLQDA 588
+ L +LDL+ D SG W L+++ +L +N+S C S+++ + +TR +
Sbjct: 156 RNLKELDLRESDVDDVSGHW-LSHFPDTYTSLVSLNIS-CLASEVSFSALERLVTRCPNL 213
Query: 589 KLVHLT 594
K + L
Sbjct: 214 KSLKLN 219
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 25/191 (13%)
Query: 390 MITEKGLYQ-LGSFCLRLEEIDLTDCNGVNDKGLEY--LSRCSELLFLKL-GLCENISDK 445
+ +++ L+Q L F R++ +DL+ N V + + LS+CS+L L L GL +SD
Sbjct: 42 LASDESLWQTLDEF--RVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL--RLSDP 95
Query: 446 GLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGME----H 501
+ +A N ++ L+L CSG + L L + C +L +LNLS+C + T++ ++ H
Sbjct: 96 IVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 154
Query: 502 IRFIEDLSDLELRGLTK-ITSAGLTALAAGCKRLADLDLKHCAKIDD---SGFWALAYYS 557
+ E ++ L L G K + + L+ L C L LDL + + F+ L Y
Sbjct: 155 VS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-- 210
Query: 558 QNLRQINLSYC 568
L+ ++LS C
Sbjct: 211 --LQHLSLSRC 219
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDK 420
T+ + A+A + L + +K L L C L +DL+D + +
Sbjct: 141 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 200
Query: 421 GLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAAL 476
+ + + L L L C +I + L + I L + GI DG L
Sbjct: 201 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG----EIPTLKTLQVFGIVPDGTLQL 252
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 425 LSRCSELLFLKL-GLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 483
LS+CS+L L L GL +SD + +A N ++ L+L CSG + L L + C +L
Sbjct: 114 LSQCSKLQNLSLEGL--RLSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLSSCSRL 170
Query: 484 KKLNLSYCVNVTDRGME----HIRFIEDLSDLELRGLTK-ITSAGLTALAAGCKRLADLD 538
+LNLS+C + T++ ++ H+ E ++ L L G K + + L+ L C L LD
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 539 LKHCAKIDD---SGFWALAYYSQNLRQINLSYC 568
L + + F+ L Y L+ ++LS C
Sbjct: 229 LSDSVMLKNDCFQEFFQLNY----LQHLSLSRC 257
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDK 420
T+ + A+A + L + +K L L C L +DL+D + +
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238
Query: 421 GLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAAL 476
+ + + L L L C +I + L + I L + GI DG L
Sbjct: 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG----EIPTLKTLQVFGIVPDGTLQL 290
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 387 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438
SC MI GL + CL ++ I + D + V G+E +S+ L +L+ G+
Sbjct: 87 SCQMIXGSGLK---AVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGV 135
>pdb|1HQT|A Chain A, The Crystal Structure Of An Aldehyde Reductase Y50f
Mutant- Nadp Complex And Its Implications For Substrate
Binding
Length = 326
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 92 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 150
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 151 LVAKGLVRALGL 162
>pdb|3CV7|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Ternary
Complex
pdb|3H4G|A Chain A, Structure Of Aldehyde Reductase Holoenzyme In Complex With
Potent Aldose Reductase Inhibitor Fidarestat:
Implications For Inhibitor Binding And Selectivity
pdb|3FX4|A Chain A, Porcine Aldehyde Reductase In Ternary Complex With
Inhibitor
Length = 325
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1AE4|A Chain A, Aldehyde Reductase Complexed With Cofactor And Inhibitor,
Alpha Carbon Atoms Only
Length = 325
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1CWN|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Holoenzyme
Length = 324
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 148
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 149 LVAKGLVRALGL 160
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 57 LFILLDKYPYIKT---------LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILS--- 104
L I YP++ + L + PRV + + + + + + +L
Sbjct: 245 LDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEG 304
Query: 105 ---RSTGLRYRGLEMLARACPLLESVDLSYCC---GFGDREAAALSFASGLKEVKLDKCL 158
R G+ + R C L+ V L YCC GF L SGL E+KL
Sbjct: 305 DVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSY 364
Query: 159 NVTD 162
N D
Sbjct: 365 NQMD 368
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 481 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 540
K+L + TD+G+E + I ++ D E L ++T + + +A C R +++L
Sbjct: 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELS 1619
Query: 541 HCAKIDDS 548
+ DS
Sbjct: 1620 YEVVDKDS 1627
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 481 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLK 540
K+L + TD+G+E + I ++ D E L ++T + + +A C R +++L
Sbjct: 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELS 1619
Query: 541 HCAKIDDS 548
+ DS
Sbjct: 1620 YEVVDKDS 1627
>pdb|2ALR|A Chain A, Aldehyde Reductase
Length = 324
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETW-KALEA 148
Query: 101 LI 102
L+
Sbjct: 149 LV 150
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 527 LAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN-LSYCALSDMALCMVMGNMTRL 585
+A+ K+L + LK +++ D+G A Y +N + +N L YC + + L ++G L
Sbjct: 424 VASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQE-L 482
Query: 586 QDAKLVHLTNCTREGFELALRSCCMRIKK 614
+D + + +RE ++ IK+
Sbjct: 483 KDGVIKLRSVTSREEVDVRREDLVEEIKR 511
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 520 TSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN-LSYCALSDMALCMV 578
T+ +A+ K+L + LK +++ D+G A Y +N + +N L YC + + L +
Sbjct: 364 TTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAI 423
Query: 579 MGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKK 614
+G L+D + + +RE ++ IK+
Sbjct: 424 IGEQ-ELKDGVIKLRSVTSREEVDVRREDLVEEIKR 458
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 36/173 (20%)
Query: 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356
+++ E +T+ I D F T C+SL + L + G L SGC LK+
Sbjct: 141 FKEITIPEGVTV----IGDEAFAT----CESLEYVSLPDSXETLHNG---LFSGCGKLKS 189
Query: 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEI-DLTDCN 415
I L + I D C C+ +E N LY LG F L + ++ +
Sbjct: 190 IKLP-------RNLKIIRDYCFA-ECILLE--NXEFPNSLYYLGDFALSKTGVKNIIIPD 239
Query: 416 GVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGI 468
+ G C++L E+IS I +N LRI G Y CSG+
Sbjct: 240 SFTELGKSVFYGCTDL--------ESIS------IQNNKLRIGGSLFYNCSGL 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,199,138
Number of Sequences: 62578
Number of extensions: 596699
Number of successful extensions: 1833
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 45
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)