Query 006499
Match_columns 643
No_of_seqs 372 out of 3728
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 00:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.3E-33 2.8E-38 254.7 9.9 333 302-639 139-478 (483)
2 KOG4341 F-box protein containi 100.0 1.3E-32 2.8E-37 248.3 14.3 385 9-489 74-460 (483)
3 PLN00113 leucine-rich repeat r 100.0 5.6E-29 1.2E-33 277.6 19.9 498 57-594 85-582 (968)
4 PLN00113 leucine-rich repeat r 100.0 3E-28 6.4E-33 271.8 21.5 509 65-618 69-579 (968)
5 KOG2120 SCF ubiquitin ligase, 99.9 2.6E-24 5.5E-29 186.0 12.9 269 6-311 97-373 (419)
6 KOG4194 Membrane glycoprotein 99.8 3.7E-22 8E-27 188.5 -1.1 410 92-556 48-463 (873)
7 KOG4194 Membrane glycoprotein 99.8 7.5E-22 1.6E-26 186.4 -0.7 271 301-591 173-447 (873)
8 cd00116 LRR_RI Leucine-rich re 99.7 7.5E-15 1.6E-19 142.8 24.5 118 453-574 163-294 (319)
9 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-14 2.3E-19 141.7 23.2 264 298-570 20-319 (319)
10 KOG2120 SCF ubiquitin ligase, 99.7 2.5E-16 5.5E-21 136.9 9.8 203 327-535 186-390 (419)
11 PLN03210 Resistant to P. syrin 99.6 9.1E-15 2E-19 163.6 14.5 313 249-597 589-907 (1153)
12 KOG1947 Leucine rich repeat pr 99.6 3.3E-14 7.2E-19 147.3 13.4 200 401-603 240-447 (482)
13 KOG0618 Serine/threonine phosp 99.6 4.8E-16 1E-20 155.8 -0.3 128 428-569 358-487 (1081)
14 PLN03210 Resistant to P. syrin 99.5 3.3E-14 7.2E-19 159.2 14.1 270 248-546 633-907 (1153)
15 KOG1947 Leucine rich repeat pr 99.5 4.9E-14 1.1E-18 146.1 12.7 272 302-575 162-445 (482)
16 KOG0444 Cytoskeletal regulator 99.5 2.6E-16 5.6E-21 150.8 -3.9 370 199-626 7-378 (1255)
17 KOG0618 Serine/threonine phosp 99.4 6.4E-15 1.4E-19 147.9 -1.6 247 326-595 241-488 (1081)
18 KOG1909 Ran GTPase-activating 99.4 5.9E-12 1.3E-16 112.9 14.8 196 402-604 90-320 (382)
19 KOG0444 Cytoskeletal regulator 99.4 4.2E-15 9.2E-20 142.6 -5.8 230 378-627 126-356 (1255)
20 KOG1909 Ran GTPase-activating 99.4 8.2E-12 1.8E-16 112.0 14.7 254 293-575 22-317 (382)
21 KOG3207 Beta-tubulin folding c 99.3 1.8E-12 3.9E-17 119.6 3.0 234 352-593 121-364 (505)
22 KOG3207 Beta-tubulin folding c 99.1 1.9E-11 4.2E-16 112.9 2.3 210 300-515 120-335 (505)
23 KOG0472 Leucine-rich repeat pr 99.0 3.8E-12 8.2E-17 116.0 -6.7 109 477-594 431-539 (565)
24 PF12937 F-box-like: F-box-lik 98.8 1.3E-09 2.8E-14 70.3 1.7 38 7-45 1-38 (47)
25 KOG3665 ZYG-1-like serine/thre 98.8 1.5E-08 3.3E-13 105.3 9.9 143 446-593 139-285 (699)
26 KOG0472 Leucine-rich repeat pr 98.8 5.5E-11 1.2E-15 108.6 -7.8 109 453-571 433-541 (565)
27 PRK15387 E3 ubiquitin-protein 98.8 1.1E-08 2.4E-13 106.7 6.9 262 249-575 201-462 (788)
28 KOG4237 Extracellular matrix p 98.8 9.9E-10 2.1E-14 100.4 -1.0 92 348-444 270-361 (498)
29 PRK15387 E3 ubiquitin-protein 98.7 1.1E-08 2.3E-13 106.8 5.6 244 249-553 222-465 (788)
30 KOG4237 Extracellular matrix p 98.7 8.1E-10 1.7E-14 101.0 -2.4 87 478-569 271-357 (498)
31 KOG3665 ZYG-1-like serine/thre 98.7 8.2E-08 1.8E-12 99.9 10.9 155 404-564 122-281 (699)
32 KOG2982 Uncharacterized conser 98.6 7.5E-08 1.6E-12 84.9 5.7 168 397-572 90-263 (418)
33 PF00646 F-box: F-box domain; 98.5 2.1E-08 4.5E-13 65.2 0.1 40 6-46 2-41 (48)
34 KOG1259 Nischarin, modulator o 98.4 4E-08 8.6E-13 86.7 0.3 128 454-594 283-410 (490)
35 PF14580 LRR_9: Leucine-rich r 98.4 5E-08 1.1E-12 82.5 0.7 131 453-593 17-150 (175)
36 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.8E-12 80.0 1.6 131 402-542 17-150 (175)
37 COG5238 RNA1 Ran GTPase-activa 98.4 7.8E-06 1.7E-10 71.6 12.2 113 453-569 155-283 (388)
38 smart00256 FBOX A Receptor for 98.3 3.8E-07 8.2E-12 57.0 2.9 35 10-45 1-35 (41)
39 KOG3864 Uncharacterized conser 98.3 9.3E-07 2E-11 73.8 5.5 104 508-614 103-208 (221)
40 KOG2982 Uncharacterized conser 98.3 3.6E-07 7.8E-12 80.8 2.5 207 382-595 49-261 (418)
41 KOG3864 Uncharacterized conser 98.3 9E-07 1.9E-11 73.9 4.0 79 441-520 112-190 (221)
42 COG5238 RNA1 Ran GTPase-activa 98.2 3.8E-05 8.3E-10 67.4 13.1 71 532-604 185-262 (388)
43 PRK15370 E3 ubiquitin-protein 98.2 9.8E-06 2.1E-10 85.7 10.7 148 404-575 283-432 (754)
44 KOG4658 Apoptotic ATPase [Sign 98.1 1.8E-06 3.8E-11 92.7 4.6 36 121-156 544-580 (889)
45 PRK15370 E3 ubiquitin-protein 98.0 2E-05 4.2E-10 83.4 8.5 253 302-602 179-433 (754)
46 KOG4658 Apoptotic ATPase [Sign 97.9 9E-06 2E-10 87.4 3.5 233 248-496 544-785 (889)
47 KOG1259 Nischarin, modulator o 97.9 7.4E-06 1.6E-10 72.7 2.2 132 426-571 281-412 (490)
48 KOG0617 Ras suppressor protein 97.7 7E-07 1.5E-11 72.1 -6.4 153 427-593 31-183 (264)
49 PF13855 LRR_8: Leucine rich r 97.6 4.6E-06 1E-10 57.4 -2.8 36 557-593 24-59 (61)
50 KOG1859 Leucine-rich repeat pr 97.5 2.1E-05 4.5E-10 78.8 0.2 104 480-594 186-290 (1096)
51 KOG1859 Leucine-rich repeat pr 97.5 1.3E-05 2.9E-10 80.1 -1.5 108 453-571 185-292 (1096)
52 PF13855 LRR_8: Leucine rich r 97.2 4.4E-05 9.5E-10 52.5 -1.5 33 482-515 2-34 (61)
53 PRK15386 type III secretion pr 97.1 0.0014 3E-08 63.2 7.0 55 377-440 51-105 (426)
54 KOG4308 LRR-containing protein 97.1 0.0002 4.4E-09 71.7 1.1 42 533-575 263-307 (478)
55 KOG0617 Ras suppressor protein 97.0 8.6E-06 1.9E-10 66.0 -7.2 158 403-575 32-190 (264)
56 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 60.7 1.9 111 480-595 42-155 (260)
57 KOG2123 Uncharacterized conser 96.9 0.00059 1.3E-08 60.5 2.4 114 481-605 19-136 (388)
58 KOG2123 Uncharacterized conser 96.8 0.00058 1.3E-08 60.5 1.9 103 505-616 18-123 (388)
59 KOG2739 Leucine-rich acidic nu 96.7 0.0006 1.3E-08 60.1 0.9 111 504-618 41-151 (260)
60 smart00367 LRR_CC Leucine-rich 96.6 0.0027 6E-08 34.4 3.0 24 531-554 1-24 (26)
61 KOG4308 LRR-containing protein 96.6 0.0012 2.5E-08 66.4 2.4 206 406-618 89-326 (478)
62 PF12799 LRR_4: Leucine Rich r 96.6 0.0025 5.3E-08 39.9 2.8 36 533-571 2-37 (44)
63 PLN03150 hypothetical protein; 96.4 0.0042 9.1E-08 65.6 5.2 87 479-569 440-526 (623)
64 PLN03215 ascorbic acid mannose 96.4 0.0024 5.2E-08 60.9 2.9 39 6-44 3-41 (373)
65 PLN03150 hypothetical protein; 96.3 0.0077 1.7E-07 63.7 6.8 104 483-592 420-524 (623)
66 smart00367 LRR_CC Leucine-rich 96.2 0.0069 1.5E-07 32.8 3.0 20 481-500 2-21 (26)
67 PF12799 LRR_4: Leucine Rich r 96.2 0.0037 8E-08 39.1 2.1 35 558-594 1-35 (44)
68 KOG1644 U2-associated snRNP A' 95.8 0.0038 8.2E-08 52.8 1.3 36 480-516 87-123 (233)
69 COG4886 Leucine-rich repeat (L 95.7 0.0072 1.6E-07 60.6 2.9 151 405-572 141-291 (394)
70 KOG4579 Leucine-rich repeat (L 95.6 0.0036 7.8E-08 49.3 0.1 88 481-575 53-140 (177)
71 KOG2997 F-box protein FBX9 [Ge 95.1 0.015 3.2E-07 52.7 2.6 39 6-45 106-149 (366)
72 PRK15386 type III secretion pr 95.1 0.021 4.6E-07 55.3 3.8 135 452-619 49-186 (426)
73 KOG0281 Beta-TrCP (transducin 95.1 0.0093 2E-07 54.3 1.3 42 4-46 72-117 (499)
74 COG4886 Leucine-rich repeat (L 95.1 0.02 4.3E-07 57.4 3.9 172 403-593 115-287 (394)
75 KOG1644 U2-associated snRNP A' 95.1 0.0081 1.8E-07 50.9 0.7 107 481-593 42-150 (233)
76 PF13516 LRR_6: Leucine Rich r 94.7 0.023 5E-07 30.0 1.7 18 558-575 2-19 (24)
77 PF13516 LRR_6: Leucine Rich r 94.0 0.041 8.9E-07 29.0 1.7 23 531-554 1-23 (24)
78 KOG4579 Leucine-rich repeat (L 93.8 0.029 6.2E-07 44.4 1.3 89 482-575 28-117 (177)
79 smart00368 LRR_RI Leucine rich 91.6 0.31 6.8E-06 26.8 3.1 21 533-554 3-23 (28)
80 KOG0531 Protein phosphatase 1, 91.4 0.039 8.4E-07 55.5 -1.2 109 478-599 92-202 (414)
81 KOG0531 Protein phosphatase 1, 91.4 0.071 1.5E-06 53.7 0.7 110 453-574 93-202 (414)
82 PF13013 F-box-like_2: F-box-l 91.1 0.25 5.4E-06 37.9 3.1 29 7-36 22-50 (109)
83 smart00368 LRR_RI Leucine rich 90.1 0.42 9.1E-06 26.3 2.7 22 558-580 2-23 (28)
84 PF13504 LRR_7: Leucine rich r 89.4 0.24 5.2E-06 23.5 1.2 13 559-571 2-14 (17)
85 PF13306 LRR_5: Leucine rich r 89.3 0.029 6.2E-07 45.8 -3.5 32 557-591 80-111 (129)
86 KOG0274 Cdc4 and related F-box 85.0 0.31 6.7E-06 50.1 0.4 46 3-49 104-149 (537)
87 PF13306 LRR_5: Leucine rich r 82.4 0.38 8.3E-06 39.0 -0.2 35 402-438 10-44 (129)
88 KOG3763 mRNA export factor TAP 80.7 3.6 7.8E-05 41.4 5.7 86 452-538 215-307 (585)
89 KOG3763 mRNA export factor TAP 80.5 3.4 7.4E-05 41.5 5.4 84 376-461 216-307 (585)
90 PF00560 LRR_1: Leucine Rich R 77.2 1.2 2.7E-05 22.7 0.8 14 559-572 1-14 (22)
91 smart00369 LRR_TYP Leucine-ric 71.2 2.3 5.1E-05 22.7 1.0 16 558-573 2-17 (26)
92 smart00370 LRR Leucine-rich re 71.2 2.3 5.1E-05 22.7 1.0 16 558-573 2-17 (26)
93 smart00365 LRR_SD22 Leucine-ri 59.0 7.7 0.00017 20.9 1.5 14 558-571 2-15 (26)
94 KOG0532 Leucine-rich repeat (L 54.7 5.1 0.00011 40.6 0.6 125 406-542 145-270 (722)
95 KOG0532 Leucine-rich repeat (L 54.4 2.1 4.6E-05 43.1 -1.9 155 423-593 115-270 (722)
96 KOG3926 F-box proteins [Amino 52.2 21 0.00045 32.3 3.8 39 5-43 200-238 (332)
97 PF07723 LRR_2: Leucine Rich R 46.5 18 0.0004 19.4 1.7 8 380-387 2-9 (26)
98 smart00364 LRR_BAC Leucine-ric 32.4 25 0.00055 18.9 0.9 14 558-571 2-15 (26)
99 KOG3735 Tropomodulin and leiom 24.4 2.5E+02 0.0055 26.9 6.3 29 525-554 248-276 (353)
100 KOG3735 Tropomodulin and leiom 21.5 1.3E+02 0.0029 28.6 4.0 70 549-618 246-321 (353)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=254.75 Aligned_cols=333 Identities=28% Similarity=0.509 Sum_probs=301.9
Q ss_pred CccEEEcCCC-ccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 006499 302 NLEAITMDGA-RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGL 380 (643)
Q Consensus 302 ~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 380 (643)
.|+.|.+.|+ .+.+..+..+...||++++|.+.+|..+++.....+.+.|++|+++++..|..+++..+..+++.|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5777888887 466778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhc-cCCCCcEeccCCCCCCChHHHHHHHhcCCCCcE
Q 006499 381 VCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQG 459 (643)
Q Consensus 381 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 459 (643)
++++++.|+.+.+.+++.+.+.+..++.+...+|.......+..+. .++.+..+++..|..++|.++..+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999999999999999999999999999999888877766655 478889999999999999999999999999999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhh-cCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEe
Q 006499 460 LDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLD 538 (643)
Q Consensus 460 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 538 (643)
|..++|..+++..+..+..++++|+.+.+..|..+++..+..++ +++.|+.+++.+|..+.+..+..+..+|+.|++|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 99999999999999999999999999999999999999999998 69999999999999888888888888999999999
Q ss_pred cCCCCCCChHHHHHHHh---hcccCCeEEeccCC-CCHHHHHHHHhhcccccccccccCCCCCHHHHHHHHHhcCCCCce
Q 006499 539 LKHCAKIDDSGFWALAY---YSQNLRQINLSYCA-LSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKK 614 (643)
Q Consensus 539 l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~c~~l~~ 614 (643)
++.|..++|.++..+.. ....|..+.+++|+ +++... ..+..|+.|+.+++.+|.+++.+++.++.. ++-+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~vtk~~i~~~~~----~lp~ 453 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQDVTKEAISRFAT----HLPN 453 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhhhhhhhhHHHHh----hCcc
Confidence 99999999998877763 45689999999999 777677 999999999999999999999999988643 4566
Q ss_pred eEecchhhhccCHHHHHHhhhhcee
Q 006499 615 VKLLAPIRFLLSSEILETLHAAGCK 639 (643)
Q Consensus 615 l~l~~~~~~~~~~~~~~~~~~~~~~ 639 (643)
+.+|+++++..||+++.+++++.|+
T Consensus 454 i~v~a~~a~~t~p~~v~~~~~~v~r 478 (483)
T KOG4341|consen 454 IKVHAYFAPVTPPGFVKGLHQRVCR 478 (483)
T ss_pred ceehhhccCCCCccccccchhhccc
Confidence 6778899999999999999887764
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=248.35 Aligned_cols=385 Identities=24% Similarity=0.415 Sum_probs=221.3
Q ss_pred cCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhccccccccchHHHHHHHHhhCCCCcEecccCCCC-CCchhHHHHh
Q 006499 9 VLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPR-VNDGTVSFLL 87 (643)
Q Consensus 9 ~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~ 87 (643)
.||+|++..||++|+ ...+.+++.+|+.|...+-....|-+ .++..... +....+..+
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~-------------------idL~t~~rDv~g~VV~~~- 132 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQH-------------------IDLFTFQRDVDGGVVENM- 132 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhcccccee-------------------eehhcchhcCCCcceehH-
Confidence 599999999999999 99999999999999876644322222 22111110 111112222
Q ss_pred hhhhhhcccccceEecCCCCCCChhHHHHHHhhCCCCcEeeCCCCCCCChHHHHHhhh-ccCCcEEecCCCCccchHhHH
Q 006499 88 SQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVGLA 166 (643)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~l~ 166 (643)
.......++++.+.++.......+..+.+.|||+++|.+.+|..+++.....+++ +++|++|++..|..+++..+.
T Consensus 133 ---~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 133 ---ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ---hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 2556678889999998888888888888888888888888876555554444433 345555555554445444444
Q ss_pred HHHHhCCCccEEecCccCCccHHHHHHHHHhCCCCcEEEecCCccChHHHHHhhcCCCCceEEecCCCCCChhhHHHHHh
Q 006499 167 KIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLES 246 (643)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 246 (643)
.++++|++|+++++++|+.+...++..+.++ +..++.+...||.....+.+..+..
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG------------------------~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRG------------------------CKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhcc------------------------chhhhhhhhcccccccHHHHHHHhc
Confidence 4444455555555554444443333333322 3334444445666666666666666
Q ss_pred cCCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCC
Q 006499 247 GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCK 326 (643)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 326 (643)
+++.+.++++..|..+++.++..+..++..|+.+..++|. .+++..+..+..+++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t-------------------------~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT-------------------------DITDEVLWALGQHCH 320 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC-------------------------CCchHHHHHHhcCCC
Confidence 6666666776666666666655555555555555544442 233444555555556
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCc
Q 006499 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (643)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (643)
+|+.+.+..|..+++.++..+..+++.|+.+++.+|..+.+..+..++..|+.|+.+.+++|..+++++...+...-
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~--- 397 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS--- 397 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc---
Confidence 66666666665555555555555566666666665555555555555555555555555555555555444332100
Q ss_pred cEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEE
Q 006499 407 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKL 486 (643)
Q Consensus 407 ~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 486 (643)
.....|..+.+++|+.+++..+..+. .|++|+.+++.+|..++.+++..+..++|+++..
T Consensus 398 -------------------c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 398 -------------------CSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred -------------------ccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 01344555555555555555544443 3555666666666556555566565556665555
Q ss_pred ecC
Q 006499 487 NLS 489 (643)
Q Consensus 487 ~l~ 489 (643)
.+.
T Consensus 458 a~~ 460 (483)
T KOG4341|consen 458 AYF 460 (483)
T ss_pred hhc
Confidence 443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.6e-29 Score=277.57 Aligned_cols=498 Identities=20% Similarity=0.185 Sum_probs=305.7
Q ss_pred HHHHHhhCCCCcEecccCCCCCCchhHHHHhhhhhhhcccccceEecCCCCCCChhHHHHHHhhCCCCcEeeCCCCCCCC
Q 006499 57 LFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFG 136 (643)
Q Consensus 57 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (643)
++..+..+++|+.|+++++.-...... .+ ...+.+|++|+++++.-..... ...+++|++|+++++. +.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~-~~-----~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~ 153 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPD-DI-----FTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LS 153 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCCh-HH-----hccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-cc
Confidence 344566778888888876532111111 11 2355778888887763211111 1246778888888753 33
Q ss_pred hHHHHHhhhccCCcEEecCCCCccchHhHHHHHHhCCCccEEecCccCCccHHHHHHHHHhCCCCcEEEecCCccChHHH
Q 006499 137 DREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSF 216 (643)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 216 (643)
......+..+++|++|+++++ .+.......+. .+++|++|++.++. +... ++.....+++|+.|++++|.+.....
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLT-NLTSLEFLTLASNQ-LVGQ-IPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred ccCChHHhcCCCCCEEECccC-cccccCChhhh-hCcCCCeeeccCCC-CcCc-CChHHcCcCCccEEECcCCccCCcCC
Confidence 334455677788888888774 33322222333 37788888887763 2211 22233467888888888887766666
Q ss_pred HHhhcCCCCceEEecCCCCCChhhHHHHHhcCCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHH
Q 006499 217 CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHH 296 (643)
Q Consensus 217 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (643)
..+..+++|++|++.+|. +.......+.. +++|+.|+++++.. .. .++.....+++|++|+++++. ........
T Consensus 230 ~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~ 303 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKL-SG-PIPPSIFSLQKLISLDLSDNS--LSGEIPEL 303 (968)
T ss_pred hhHhcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCee-ec-cCchhHhhccCcCEEECcCCe--eccCCChh
Confidence 667778888888887643 33333333444 77888888877432 21 122223356788888887764 33334455
Q ss_pred hccCCCccEEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhc
Q 006499 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS 376 (643)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (643)
+..+++|+.|++.++.+.......+. .+++|+.|++.++. +... +......+++|+.|+++++. +...... ....
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n~-l~~~~p~-~~~~ 378 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTNN-LTGEIPE-GLCS 378 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCCe-eEeeCCh-hHhC
Confidence 66778888888888766543333333 67888888888753 3321 22233467888888887653 2221111 1223
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCC
Q 006499 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLR 456 (643)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 456 (643)
+++|+.|++.++. +.......+ ..+++|+.|++++ +.++...+..+.++++|+.|++++| .++..... ....+++
T Consensus 379 ~~~L~~L~l~~n~-l~~~~p~~~-~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~ 453 (968)
T PLN00113 379 SGNLFKLILFSNS-LEGEIPKSL-GACRSLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISNN-NLQGRINS-RKWDMPS 453 (968)
T ss_pred cCCCCEEECcCCE-ecccCCHHH-hCCCCCCEEECcC-CEeeeECChhHhcCCCCCEEECcCC-cccCccCh-hhccCCC
Confidence 5778888887754 222211222 2678888888888 5666666666778888888888886 34332211 1235788
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcE
Q 006499 457 IQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLAD 536 (643)
Q Consensus 457 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 536 (643)
|+.|++++|...+. +.... +.++|+.|++++| .++......+..+++|+.|++++|. +....... +..+++|+.
T Consensus 454 L~~L~L~~n~~~~~--~p~~~-~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~ 527 (968)
T PLN00113 454 LQMLSLARNKFFGG--LPDSF-GSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDE-LSSCKKLVS 527 (968)
T ss_pred CcEEECcCceeeee--cCccc-ccccceEEECcCC-ccCCccChhhhhhhccCEEECcCCc-ceeeCChH-HcCccCCCE
Confidence 99999888743221 11111 3478899999885 5655555567778889999998863 43222222 346888999
Q ss_pred EecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCC
Q 006499 537 LDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 594 (643)
Q Consensus 537 L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~ 594 (643)
|++++| .++......+. .+++|+.|++++|+++.... ..+..+++|+.|++++|+
T Consensus 528 L~Ls~N-~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 528 LDLSHN-QLSGQIPASFS-EMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNH 582 (968)
T ss_pred EECCCC-cccccCChhHh-CcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCc
Confidence 999988 66644333333 45889999999998776555 667788889999998875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3e-28 Score=271.76 Aligned_cols=509 Identities=14% Similarity=0.056 Sum_probs=329.3
Q ss_pred CCCcEecccCCCCCCchhHHHHhhhhhhhcccccceEecCCCCCCChhHHHHHHhhCCCCcEeeCCCCCCCChHHHHHhh
Q 006499 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (643)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (643)
.+++.|++++.. +...... ....+++|+.|+++++. +.......+...+++|++|+++++....... ..
T Consensus 69 ~~v~~L~L~~~~-i~~~~~~------~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~ 137 (968)
T PLN00113 69 SRVVSIDLSGKN-ISGKISS------AIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RG 137 (968)
T ss_pred CcEEEEEecCCC-ccccCCh------HHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccC---cc
Confidence 467778877643 2111111 13467889999998873 3222222344478899999998764322111 13
Q ss_pred hccCCcEEecCCCCccchHhHHHHHHhCCCccEEecCccCCccHHHHHHHHHhCCCCcEEEecCCccChHHHHHhhcCCC
Q 006499 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (643)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (643)
.+++|++|+++++ .++......+ ..+++|++|++.++. +... ++....++++|++|++++|.+.......+.++++
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~~-~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPNDI-GSFSSLKVLDLGGNV-LVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred ccCCCCEEECcCC-cccccCChHH-hcCCCCCEEECccCc-cccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 4688999999884 3433222333 348899999998763 2211 2223357889999999988777666677778889
Q ss_pred CceEEecCCCCCChhhHHHHHhcCCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCcc
Q 006499 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (643)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 304 (643)
|+.|++.++. +.......+.. +++|++|+++++.. .. .++.....+++|+.|+++++. +.......+..+++|+
T Consensus 214 L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 214 LKWIYLGYNN-LSGEIPYEIGG-LTSLNHLDLVYNNL-TG-PIPSSLGNLKNLQYLFLYQNK--LSGPIPPSIFSLQKLI 287 (968)
T ss_pred ccEEECcCCc-cCCcCChhHhc-CCCCCEEECcCcee-cc-ccChhHhCCCCCCEEECcCCe--eeccCchhHhhccCcC
Confidence 9999998753 43333334444 88999999987542 21 233345567889999988775 3333445566788899
Q ss_pred EEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEe
Q 006499 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLK 384 (643)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 384 (643)
.|++++|.+.......+ ..+++|+.|++.++. +.... ...+..+++|+.|++.++. +... .......+++|+.|+
T Consensus 288 ~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 288 SLDLSDNSLSGEIPELV-IQLQNLEILHLFSNN-FTGKI-PVALTSLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLD 362 (968)
T ss_pred EEECcCCeeccCCChhH-cCCCCCcEEECCCCc-cCCcC-ChhHhcCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEE
Confidence 99998887654433333 367889999998753 33221 2233578899999998754 3221 112233468899999
Q ss_pred ccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCC
Q 006499 385 IESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (643)
Q Consensus 385 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 464 (643)
++++. +.......+. .+++|+.|++++ +.+.......+..+++|+.|++.+| .++...... ...+++|+.|++++
T Consensus 363 Ls~n~-l~~~~p~~~~-~~~~L~~L~l~~-n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 363 LSTNN-LTGEIPEGLC-SSGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSE-FTKLPLVYFLDISN 437 (968)
T ss_pred CCCCe-eEeeCChhHh-CcCCCCEEECcC-CEecccCCHHHhCCCCCCEEECcCC-EeeeECChh-HhcCCCCCEEECcC
Confidence 98754 2221111222 567899999998 6777766777888999999999987 443322222 23678999999988
Q ss_pred CCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCC
Q 006499 465 CSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAK 544 (643)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 544 (643)
+ .++.. .......+++|+.|++++|.. ..... .....++|+.|++++| .+....... +..+++|+.|++++| .
T Consensus 438 N-~l~~~-~~~~~~~l~~L~~L~L~~n~~-~~~~p-~~~~~~~L~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~ 510 (968)
T PLN00113 438 N-NLQGR-INSRKWDMPSLQMLSLARNKF-FGGLP-DSFGSKRLENLDLSRN-QFSGAVPRK-LGSLSELMQLKLSEN-K 510 (968)
T ss_pred C-cccCc-cChhhccCCCCcEEECcCcee-eeecC-cccccccceEEECcCC-ccCCccChh-hhhhhccCEEECcCC-c
Confidence 6 34332 222233578999999998743 22111 1224578999999986 344322222 346889999999999 6
Q ss_pred CChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCCCCC--HHHHHHHHHhcCCCCceeEec
Q 006499 545 IDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCT--REGFELALRSCCMRIKKVKLL 618 (643)
Q Consensus 545 i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~~~--~~~~~~~~~~~c~~l~~l~l~ 618 (643)
+.......+ ..+++|++|++++|.++.... ..+..+++|+.|++++|.-.. +..+ ..++.|+.+++.
T Consensus 511 l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~l~ls 579 (968)
T PLN00113 511 LSGEIPDEL-SSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNL-----GNVESLVQVNIS 579 (968)
T ss_pred ceeeCChHH-cCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhH-----hcCcccCEEecc
Confidence 654433333 346899999999999887666 678899999999999985421 2222 337789999987
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-24 Score=185.97 Aligned_cols=269 Identities=19% Similarity=0.279 Sum_probs=165.6
Q ss_pred ccccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhcccccccc------chHHHHHHHHhhCCCCcEecccCCCCCC
Q 006499 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRV------LRVEFLFILLDKYPYIKTLDLSVCPRVN 79 (643)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 79 (643)
.|+.|||||+..||+.|+ .+++.+++.|||||+++....+.|.+. .++..+.++.++ ....+.+. ..+.
T Consensus 97 ~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rla--r~~~ 171 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLA--RSFM 171 (419)
T ss_pred CcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcc--hhhh
Confidence 378999999999999999 999999999999999998776654332 223334444332 12222221 1111
Q ss_pred c-hhHHHHhhhhhhhcccccceEecCCCCCCChhHHHHHHhhCCCCcEeeCCCCCCCChHHHHHhhhccCCcEEecCCCC
Q 006499 80 D-GTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCL 158 (643)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 158 (643)
+ ..+... .......++++++++. .++...+..+...|.+|+.|.+.+. .+.|.....+++..+|+.|+++.|.
T Consensus 172 ~~prlae~----~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 172 DQPRLAEH----FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred cCchhhhh----hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeecccccc
Confidence 1 112222 1334456888888877 7777778888888888888888874 4666667777777888888888888
Q ss_pred ccchHhHHHHHHhCCCccEEecCccCCccHHHHHHHHHhCCCCcEEEecCCccChHHHHHhhcCCCCceEEecCCC-CCC
Q 006499 159 NVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCP-CVD 237 (643)
Q Consensus 159 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~ 237 (643)
+++..++..+...|..|.+|++++|.-.++..-..+..--++|+ .|+++||. ++.
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~------------------------~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT------------------------QLNLSGYRRNLQ 301 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh------------------------hhhhhhhHhhhh
Confidence 88877777777777777777777775444432111222224444 44444432 223
Q ss_pred hhhHHHHHhcCCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCC
Q 006499 238 DTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGA 311 (643)
Q Consensus 238 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 311 (643)
...++.+...||+|..|+++++..++...+..+.+ ++.|++|.++.|.. +.+..+-.+...|.|.+|++.|+
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~-i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYD-IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcC-CChHHeeeeccCcceEEEEeccc
Confidence 33444555556666666666655555533333332 55566666655544 44444445555555555555554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.7e-22 Score=188.48 Aligned_cols=410 Identities=20% Similarity=0.177 Sum_probs=234.6
Q ss_pred hhcccccceEecCCCCCCChhHHHHHHhhCC-CCcEeeCCCCCCCChHHHHHhhhccCCcEEecCCCCccchHhHHHHHH
Q 006499 92 LSWTRSLKSLILSRSTGLRYRGLEMLARACP-LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAV 170 (643)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~ 170 (643)
..+.-.-+.++.++. .+.......+...+| .-+.|+++++ .+.+..+..+.++++|+++++.. +.++ .++.+..
T Consensus 48 a~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~-N~Lt--~IP~f~~ 122 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK-NELT--RIPRFGH 122 (873)
T ss_pred CcCCCCceeeecCcc-ccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeecc-chhh--hcccccc
Confidence 344445566666665 333333333332333 3567888864 56677777777888888888876 2222 2233334
Q ss_pred hCCCccEEecCccCCccHHHHHHHHHhCCCCcEEEecCCccChHHHHHhhcCCCCceEEecCCCCCChhhHHHHHhcCCC
Q 006499 171 RCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPL 250 (643)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 250 (643)
...+|+.|.+.+. .++...-+.+ +..+.|++||++.|.++......+..-+++++|++.+ +.++..+...+.. +.+
T Consensus 123 ~sghl~~L~L~~N-~I~sv~se~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~-lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHN-LISSVTSEEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDS-LNS 198 (873)
T ss_pred cccceeEEeeecc-ccccccHHHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccc-cch
Confidence 3556788887763 3333332222 3557788888887766654444455556777887776 4455554444444 556
Q ss_pred CcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccC---HHHHHHHHhcCCC
Q 006499 251 LKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARIS---DSCFQTISFNCKS 327 (643)
Q Consensus 251 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~~ 327 (643)
|..|.+++ +.++..... .++.+++|+.|++..+. +.....-.|..+++|+.|.+..|.+. +..+. .+.+
T Consensus 199 L~tlkLsr-NrittLp~r-~Fk~L~~L~~LdLnrN~--irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy----~l~k 270 (873)
T KOG4194|consen 199 LLTLKLSR-NRITTLPQR-SFKRLPKLESLDLNRNR--IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY----GLEK 270 (873)
T ss_pred heeeeccc-CcccccCHH-Hhhhcchhhhhhccccc--eeeehhhhhcCchhhhhhhhhhcCcccccCccee----eecc
Confidence 77777766 333332222 23346666666665443 22223344555666666666555432 11111 3445
Q ss_pred CcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCcc
Q 006499 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (643)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (643)
+++|++.. +.+....-..+ -++..| +.|+++++. +........ +.+++|+
T Consensus 271 me~l~L~~-N~l~~vn~g~l-fgLt~L--------------------------~~L~lS~Na-I~rih~d~W-sftqkL~ 320 (873)
T KOG4194|consen 271 MEHLNLET-NRLQAVNEGWL-FGLTSL--------------------------EQLDLSYNA-IQRIHIDSW-SFTQKLK 320 (873)
T ss_pred cceeeccc-chhhhhhcccc-cccchh--------------------------hhhccchhh-hheeecchh-hhcccce
Confidence 55555544 12221111111 133444 444444311 211111111 1678899
Q ss_pred EEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCC--hHHHHHHHhcCCCCCE
Q 006499 408 EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIG--DDGLAALSNGCKKLKK 485 (643)
Q Consensus 408 ~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~L~~ 485 (643)
+|++++ +.++......+..+..|+.|+++.+ .++...-..+ ..+.+|++|+++++ .+. -+.....+.++++|++
T Consensus 321 ~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 321 ELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred eEeccc-cccccCChhHHHHHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhh
Confidence 999998 8888887788888888999999885 4543332222 25688999998874 332 1223344567899999
Q ss_pred EecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhh
Q 006499 486 LNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYY 556 (643)
Q Consensus 486 L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 556 (643)
|++.+ +++....-.++.+++.|++|+|.++ .+......++. .+ .|++|.+..-..+-|..+..+..+
T Consensus 397 L~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred eeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccc-cc-hhhhhhhcccceEEeccHHHHHHH
Confidence 99998 6888888888899999999999885 34433333332 34 788888876544555555555543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=7.5e-22 Score=186.42 Aligned_cols=271 Identities=17% Similarity=0.161 Sum_probs=141.1
Q ss_pred CCccEEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 006499 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGL 380 (643)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 380 (643)
.++++|++++|.+++-....+. .+.+|..|.++. +.++......+ ..+++|+.|++..+ .+..... ..++.+++|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN-~irive~-ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRN-RIRIVEG-LTFQGLPSL 247 (873)
T ss_pred CCceEEeecccccccccccccc-ccchheeeeccc-CcccccCHHHh-hhcchhhhhhcccc-ceeeehh-hhhcCchhh
Confidence 3555555555554443333222 333455555554 23333322222 34555555555432 2221111 112334555
Q ss_pred cEEeccCCC--CCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCc
Q 006499 381 VCLKIESCN--MITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQ 458 (643)
Q Consensus 381 ~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 458 (643)
+.|++..++ .+.+..+ -.+.++++|++.. +.+....-..+.++..|+.|+++.+ .+......... .+++|+
T Consensus 248 ~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws-ftqkL~ 320 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAF----YGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS-FTQKLK 320 (873)
T ss_pred hhhhhhhcCcccccCcce----eeecccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhh-hcccce
Confidence 555554422 1111111 1456677777776 6666555555666777777777764 33332222221 367777
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCH--HHHHHHHhcCCcCcE
Q 006499 459 GLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITS--AGLTALAAGCKRLAD 536 (643)
Q Consensus 459 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~ 536 (643)
+|+++++ .++.-.-..+ ..+..|++|++++ +.++...-..+..+.+|++|+|+++ .+.. +.-...+.++++|++
T Consensus 321 ~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 321 ELDLSSN-RITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred eEecccc-ccccCChhHH-HHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhh
Confidence 7777763 4432111111 1246777777777 4665544445556777777777764 3321 112233446778888
Q ss_pred EecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccc
Q 006499 537 LDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLV 591 (643)
Q Consensus 537 L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~ 591 (643)
|++.+| ++....-.++ .++++|++|+|.+|.|....+ .++..+ .|++|.+.
T Consensus 397 L~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~-nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 397 LRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASIQP-NAFEPM-ELKELVMN 447 (873)
T ss_pred eeecCc-eeeecchhhh-ccCcccceecCCCCcceeecc-cccccc-hhhhhhhc
Confidence 888777 6655443333 345788888888887666666 666666 66666654
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=7.5e-15 Score=142.81 Aligned_cols=118 Identities=29% Similarity=0.373 Sum_probs=55.7
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHh---cCCCCCEEecCCCCCCChHHHHHh----hcCCCCCeEeecCCCCcCHHHHH
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAALSN---GCKKLKKLNLSYCVNVTDRGMEHI----RFIEDLSDLELRGLTKITSAGLT 525 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~ 525 (643)
.+++|++|++.+| .+++.++..+.. .+++|+.|++++| .+++.....+ ..+++|+.|++++| .+++.++.
T Consensus 163 ~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~ 239 (319)
T cd00116 163 ANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAA 239 (319)
T ss_pred hCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHH
Confidence 3445555555553 344433333322 2235666666554 4443333222 23555666666553 34444444
Q ss_pred HHHhcC----CcCcEEecCCCCCCChHHHHHHHh---hcccCCeEEeccCCCCHHH
Q 006499 526 ALAAGC----KRLADLDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCALSDMA 574 (643)
Q Consensus 526 ~~~~~~----~~L~~L~l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~ 574 (643)
.+...+ ++|++|++++| .+++.+...+.. .+++|+.+++++|.+++.+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 443332 45666666655 555444433332 2235556666666555443
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.1e-14 Score=141.72 Aligned_cols=264 Identities=24% Similarity=0.255 Sum_probs=156.8
Q ss_pred ccCCCccEEEcCCCccCHHHHHHH---HhcCCCCcEEeccCCCCCC--HHHH---HHHHhCCCCCcEEecCCCCCCC--h
Q 006499 298 RDLKNLEAITMDGARISDSCFQTI---SFNCKSLVEIGLSKCLGVT--NTGI---TQLVSGCVNLKTIDLTCCHSIT--D 367 (643)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~--~ 367 (643)
..+..|+.+.+.++.+++.....+ ....++++++++.++. +. ...+ ...+..+++|+.|+++++.... .
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334445555555555544332222 2234456666665532 22 1122 1223345677777776654321 1
Q ss_pred HHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHh---hcC-CCccEEEcCCCCCCchhhh----hhhccCCCCcEeccCCC
Q 006499 368 DAISAIADSCRGLVCLKIESCNMITEKGLYQLG---SFC-LRLEEIDLTDCNGVNDKGL----EYLSRCSELLFLKLGLC 439 (643)
Q Consensus 368 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~-~~L~~L~l~~c~~~~~~~~----~~l~~~~~L~~L~l~~~ 439 (643)
..+..+... ++|++|++++|. +++.+...+. ..+ ++|++|++++| .++..+. ..+..+++|++|++++|
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 223333333 557777777754 4433333322 234 77888888884 5553332 23445678888888886
Q ss_pred CCCChHHHHHHHh---cCCCCcEEecCCCCCCChHHHHH---HHhcCCCCCEEecCCCCCCChHHHHHhhc-----CCCC
Q 006499 440 ENISDKGLFYIAS---NCLRIQGLDLYKCSGIGDDGLAA---LSNGCKKLKKLNLSYCVNVTDRGMEHIRF-----IEDL 508 (643)
Q Consensus 440 ~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-----~~~L 508 (643)
.+++.++..+.. .+++|++|++++| .+++.+... ....+++|+.|++++| .+++..+..+.. .+.|
T Consensus 176 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 176 -GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISL 252 (319)
T ss_pred -CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCc
Confidence 566555544433 3458999999886 566555443 3345788999999985 677766665542 3799
Q ss_pred CeEeecCCCCcCHHHHH---HHHhcCCcCcEEecCCCCCCChHHHHHHHh---hc-ccCCeEEeccCCC
Q 006499 509 SDLELRGLTKITSAGLT---ALAAGCKRLADLDLKHCAKIDDSGFWALAY---YS-QNLRQINLSYCAL 570 (643)
Q Consensus 509 ~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~---~~-~~L~~L~l~~~~l 570 (643)
++|++.+| .+++.+.. .....+++|+.+++++| .+++.+.+.++. .. +.|++|++.++++
T Consensus 253 ~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999986 56544443 33445678999999999 888876666552 22 5888998888753
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-16 Score=136.95 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=122.0
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCc
Q 006499 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (643)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (643)
.+++++++. ..++...+..++..|.+|+.|.+.| ..+++.....+++ -.+|+.|+++.|.+++..++..+.++|..|
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhH
Confidence 466666665 3466666666666666666666665 3455555554444 356677777777777777776666677777
Q ss_pred cEEEcCCCCCCchhhhhhhcc-CCCCcEeccCCCC-CCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCC
Q 006499 407 EEIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCE-NISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 484 (643)
Q Consensus 407 ~~L~l~~c~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 484 (643)
.+|+++.|.-.++..-..+.. -++|+.|++++|. .+....+..+.+.||+|.+|++++|..+++..+.++. .++.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhe
Confidence 777777764444442222222 4556666666652 3344455666667777777777777767664444443 367777
Q ss_pred EEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCc
Q 006499 485 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 535 (643)
Q Consensus 485 ~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 535 (643)
+|.++.|..+..+.+-.+...|.|.+|++.|| +.+..++.+.+.+++|+
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 77777777766666666666777777777664 33334444444455544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=9.1e-15 Score=163.65 Aligned_cols=313 Identities=16% Similarity=0.230 Sum_probs=172.1
Q ss_pred CCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCCC
Q 006499 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (643)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 328 (643)
++|+.|.+.++. +. .++... ...+|++|++.++.. ......+..+++|+.++++++.... .+..+ ..+++|
T Consensus 589 ~~Lr~L~~~~~~-l~--~lP~~f-~~~~L~~L~L~~s~l---~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~l-s~l~~L 659 (1153)
T PLN03210 589 PKLRLLRWDKYP-LR--CMPSNF-RPENLVKLQMQGSKL---EKLWDGVHSLTGLRNIDLRGSKNLK-EIPDL-SMATNL 659 (1153)
T ss_pred cccEEEEecCCC-CC--CCCCcC-CccCCcEEECcCccc---cccccccccCCCCCEEECCCCCCcC-cCCcc-ccCCcc
Confidence 457777766532 11 111111 235677777776532 2233445567778888877653111 11112 256778
Q ss_pred cEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccE
Q 006499 329 VEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408 (643)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 408 (643)
+.|++.+|..+.. +...+..+++|+.|++.+|..+...... ..+++|+.|.+++|..+.. +....++|++
T Consensus 660 e~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~ 729 (1153)
T PLN03210 660 ETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKS-----FPDISTNISW 729 (1153)
T ss_pred cEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccc-----cccccCCcCe
Confidence 8888877755432 2223356777888888777655432111 1357778888877764432 1123457777
Q ss_pred EEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCC--hH--H-HHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 006499 409 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENIS--DK--G-LFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 483 (643)
Q Consensus 409 L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~--~-~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 483 (643)
|++++ +.+.... ....+++|+.|.+.++.... .. . .......+++|+.|++++|..+.. ++....++++|
T Consensus 730 L~L~~-n~i~~lP--~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L 804 (1153)
T PLN03210 730 LDLDE-TAIEEFP--SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKL 804 (1153)
T ss_pred eecCC-Ccccccc--ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCC
Confidence 88777 4544321 11246677777666532100 00 0 001112356788888877654443 22224467788
Q ss_pred CEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeE
Q 006499 484 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQI 563 (643)
Q Consensus 484 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L 563 (643)
+.|++++|+.+.... ....+++|+.|++++|..+... .....+|+.|+++++ .++.. ..-...+++|+.|
T Consensus 805 ~~L~Ls~C~~L~~LP--~~~~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n-~i~~i--P~si~~l~~L~~L 874 (1153)
T PLN03210 805 EHLEIENCINLETLP--TGINLESLESLDLSGCSRLRTF-----PDISTNISDLNLSRT-GIEEV--PWWIEKFSNLSFL 874 (1153)
T ss_pred CEEECCCCCCcCeeC--CCCCccccCEEECCCCCccccc-----cccccccCEeECCCC-CCccC--hHHHhcCCCCCEE
Confidence 888888876655321 1115677888888887665421 112357778888777 55532 1122345778888
Q ss_pred EeccCC-CCHHHHHHHHhhcccccccccccCCCCC
Q 006499 564 NLSYCA-LSDMALCMVMGNMTRLQDAKLVHLTNCT 597 (643)
Q Consensus 564 ~l~~~~-l~~~~~~~~l~~~~~L~~L~l~~c~~~~ 597 (643)
++++|+ +..... .+..+++|+.+.+.+|..++
T Consensus 875 ~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 875 DMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 888775 554322 34566777777777776553
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=3.3e-14 Score=147.30 Aligned_cols=200 Identities=32% Similarity=0.519 Sum_probs=108.3
Q ss_pred hcCCCccEEEcCCCCCCchhhhhhhcc-CCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhc
Q 006499 401 SFCLRLEEIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNG 479 (643)
Q Consensus 401 ~~~~~L~~L~l~~c~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 479 (643)
..+++|+.++++.|..+++.++..++. |++|+.|.+.+|..+++.++..++..+++|++|+++.|..+++.++..+..+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 344555555555544455555555443 5555555555554456666666666666666666666666655555555555
Q ss_pred CCCCCEEecCCCC---CCChHHHHHhhcCC--CCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHH
Q 006499 480 CKKLKKLNLSYCV---NVTDRGMEHIRFIE--DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALA 554 (643)
Q Consensus 480 ~~~L~~L~l~~c~---~l~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~ 554 (643)
|++|+.|.+..+. .+++..+..+.... .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .++....
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~ 397 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL 397 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh
Confidence 5555554443332 24443333333222 3444444444444444433332 11111145555555555 4444444
Q ss_pred hhcccCCeEEeccCC-CCHHHHHHHHhh-cccccccccccCCCCCHHHHHH
Q 006499 555 YYSQNLRQINLSYCA-LSDMALCMVMGN-MTRLQDAKLVHLTNCTREGFEL 603 (643)
Q Consensus 555 ~~~~~L~~L~l~~~~-l~~~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~ 603 (643)
..+..++.|+++.|. .++..+ ..... +..++.+.+.+|+.++......
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 447 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGL-RCLADSCSNLKDLDLSGCRVITLKSLEG 447 (482)
T ss_pred ccCCccceEecccCccccccch-HHHhhhhhccccCCccCcccccchhhhh
Confidence 444457888888887 666666 44444 7778888888888877666554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=4.8e-16 Score=155.78 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCC--CCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcC
Q 006499 428 CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC--SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFI 505 (643)
Q Consensus 428 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 505 (643)
.+.|+.|.+.++ .+++..+..+. ++++|+.|+++++ +.+.+..+ ..++.|+.|++++ ++++... ..++.|
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSG-NkL~~Lp-~tva~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSG-NKLTTLP-DTVANL 429 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhccc-chhhhhh-HHHHhh
Confidence 455666666664 66666655554 5677777777764 22222222 2456777777777 4665444 456677
Q ss_pred CCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCC
Q 006499 506 EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA 569 (643)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 569 (643)
+.|+.|...++ .+.. +..+. .++.|+.+|++.| +++...+...... |+|++|++++|.
T Consensus 430 ~~L~tL~ahsN-~l~~--fPe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSN-QLLS--FPELA-QLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCC-ceee--chhhh-hcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCc
Confidence 77777777663 3322 22333 5678888888776 7766555544433 688888888886
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=3.3e-14 Score=159.17 Aligned_cols=270 Identities=21% Similarity=0.223 Sum_probs=132.4
Q ss_pred CCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCC
Q 006499 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (643)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (643)
+++|+.|+++++..+... +. ...+++|+.|++.+|.. . ......+..+++|+.|++++|..... +.... .+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le~L~L~~c~~-L-~~lp~si~~L~~L~~L~L~~c~~L~~-Lp~~i-~l~s 705 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEI--PD-LSMATNLETLKLSDCSS-L-VELPSSIQYLNKLEDLDMSRCENLEI-LPTGI-NLKS 705 (1153)
T ss_pred CCCCCEEECCCCCCcCcC--Cc-cccCCcccEEEecCCCC-c-cccchhhhccCCCCEEeCCCCCCcCc-cCCcC-CCCC
Confidence 455555555554332221 11 22345555555555532 1 12233444555566666555421110 00000 3455
Q ss_pred CcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCC--H--HHHH-HHhhc
Q 006499 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMIT--E--KGLY-QLGSF 402 (643)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~--~~~~-~l~~~ 402 (643)
|+.|++++|..+.. +.....+|+.|++.++. +... ... -.+++|++|.+.++.... . ..+. .....
T Consensus 706 L~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~l--P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 706 LYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEEF--PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCEEeCCCCCCccc-----cccccCCcCeeecCCCc-cccc--ccc-ccccccccccccccchhhccccccccchhhhhc
Confidence 66666666543221 11123456666665432 2110 000 023555555554422100 0 0000 01112
Q ss_pred CCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006499 403 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 482 (643)
Q Consensus 403 ~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 482 (643)
+++|++|++++|..+.. .+..+.++++|+.|++++|..+..... . ..+++|+.|++++|..+... ....++
T Consensus 777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~--~-~~L~sL~~L~Ls~c~~L~~~-----p~~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPT--G-INLESLESLDLSGCSRLRTF-----PDISTN 847 (1153)
T ss_pred cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCC--C-CCccccCEEECCCCCccccc-----cccccc
Confidence 46777777777543332 344566777777777777755442111 0 14677788888777655321 112357
Q ss_pred CCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCC
Q 006499 483 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKID 546 (643)
Q Consensus 483 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~ 546 (643)
|+.|++++ +.++.. ...+..+++|+.|++.+|+++..... ....+++|+.+++++|..+.
T Consensus 848 L~~L~Ls~-n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 848 ISDLNLSR-TGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCEeECCC-CCCccC-hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 77888776 355432 23456777888888888777764222 22356777777887776554
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.53 E-value=4.9e-14 Score=146.07 Aligned_cols=272 Identities=30% Similarity=0.517 Sum_probs=190.9
Q ss_pred CccEEEcCC--CccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCC-CCCCCh--HHHHHHHhc
Q 006499 302 NLEAITMDG--ARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC-CHSITD--DAISAIADS 376 (643)
Q Consensus 302 ~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~--~~~~~~~~~ 376 (643)
.++.+.+.. ..........+...++.|+.+.+..|..+.+.++..+...+++|+.|++++ +..... .....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (482)
T KOG1947|consen 162 NLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI 241 (482)
T ss_pred HHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh
Confidence 344444443 345555666666668888888888888888777777777888888888886 333332 223446667
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhcc-CCCCcEeccCCCCCCChHHHHHHHhcCC
Q 006499 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYIASNCL 455 (643)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 455 (643)
+++|+.+++.++..+++.++..+...|++|++|.+.+|..+++.++..+.. +++|++|++++|..+++.++..+..+|+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 788888888888888888888888788888888888887788888777664 8888888888888888888888877888
Q ss_pred CCcEEecCCC---CCCChHHHHHHHhcCC-CCCEEecCCCCCCChHHHHHhhcCCCCC-eEeecCCCCcCHHHHHHHHhc
Q 006499 456 RIQGLDLYKC---SGIGDDGLAALSNGCK-KLKKLNLSYCVNVTDRGMEHIRFIEDLS-DLELRGLTKITSAGLTALAAG 530 (643)
Q Consensus 456 ~L~~L~l~~~---~~l~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~ 530 (643)
+|+.|.+..+ ..+++.++........ .+..+.+.+|+.+++..+...+ ..... .+.+.+|+.++ .++......
T Consensus 322 ~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~ 399 (482)
T KOG1947|consen 322 NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCR 399 (482)
T ss_pred chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhcc
Confidence 8777765543 3455555555444332 5666666666666666555555 33333 56677777776 566555545
Q ss_pred CCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCC-CCHHHH
Q 006499 531 CKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA-LSDMAL 575 (643)
Q Consensus 531 ~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~ 575 (643)
+..++.|+++.|...++..+......+.+++.+++.++. ++....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 555888888888778877777766556788888888887 665554
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=2.6e-16 Score=150.77 Aligned_cols=370 Identities=15% Similarity=0.115 Sum_probs=181.4
Q ss_pred CCCcEEEecCCccC-hHHHHHhhcCCCCceEEecCCCCCChhhHHHHHhcCCCCcEEEeccccccChhhHHHHHhcCCCc
Q 006499 199 LDLKSLDVSYLKLT-NDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (643)
Q Consensus 199 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (643)
|-.+-+++++|.++ +..+..+..+.+++.|.+.. +.+. ...+.++. +.+|++|.+.... + ..+..-...+|.|
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~-lqkLEHLs~~HN~-L--~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSR-LQKLEHLSMAHNQ-L--ISVHGELSDLPRL 80 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHH-Hhhhhhhhhhhhh-h--Hhhhhhhccchhh
Confidence 45566777777665 44455566677777777775 2221 12233333 6666666665521 1 1122222234445
Q ss_pred cEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEE
Q 006499 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (643)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (643)
+.+.++.+.. -..-....+-.+..|..|+++.+.+..- ...+ ....++-.|++++ +++....- .++-++..|-.
T Consensus 81 Rsv~~R~N~L-KnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~L-E~AKn~iVLNLS~-N~IetIPn-~lfinLtDLLf- 154 (1255)
T KOG0444|consen 81 RSVIVRDNNL-KNSGIPTDIFRLKDLTILDLSHNQLREV-PTNL-EYAKNSIVLNLSY-NNIETIPN-SLFINLTDLLF- 154 (1255)
T ss_pred HHHhhhcccc-ccCCCCchhcccccceeeecchhhhhhc-chhh-hhhcCcEEEEccc-CccccCCc-hHHHhhHhHhh-
Confidence 5554443322 1111222333444455555554433210 0001 1223444444443 12221111 11112333333
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccC
Q 006499 358 DLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLG 437 (643)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~ 437 (643)
|+++++. + +.+..-.+.+..|++|++++ +.+.-..+..+..+.+|+.|.++
T Consensus 155 -------------------------LDLS~Nr-L--e~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 155 -------------------------LDLSNNR-L--EMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred -------------------------hccccch-h--hhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcc
Confidence 4444321 1 11111122344555666665 44444444445555555555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCC
Q 006499 438 LCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLT 517 (643)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~ 517 (643)
+. +-+-..+..-...+.+|..++++. ++++. ++.-.-.+++|+.|++++ +.++.-.+ ....+.+|+.|+++.+
T Consensus 206 ~T-qRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~--vPecly~l~~LrrLNLS~-N~iteL~~-~~~~W~~lEtLNlSrN- 278 (1255)
T KOG0444|consen 206 NT-QRTLDNIPTSLDDLHNLRDVDLSE-NNLPI--VPECLYKLRNLRRLNLSG-NKITELNM-TEGEWENLETLNLSRN- 278 (1255)
T ss_pred cc-cchhhcCCCchhhhhhhhhccccc-cCCCc--chHHHhhhhhhheeccCc-Cceeeeec-cHHHHhhhhhhccccc-
Confidence 53 222222222222455666677765 34432 122222357777777777 45554321 1335677778888773
Q ss_pred CcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCCCCC
Q 006499 518 KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCT 597 (643)
Q Consensus 518 ~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~~~ 597 (643)
.++. +..-...+++|++|.+.+| +++-.++.+..+.+.+|+.+...+|.+. ..+ +.+.+|+.|+.|.+.+..-++
T Consensus 279 QLt~--LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-lVP-EglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 279 QLTV--LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP-EGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred hhcc--chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-cCc-hhhhhhHHHHHhcccccceee
Confidence 4432 2222235677888888777 7777776666666677777777777642 222 455778888888877666665
Q ss_pred H-HHHHHHHHhcCCCCceeEecchhhhccC
Q 006499 598 R-EGFELALRSCCMRIKKVKLLAPIRFLLS 626 (643)
Q Consensus 598 ~-~~~~~~~~~~c~~l~~l~l~~~~~~~~~ 626 (643)
. +++.- .+.|+.++++++-.-+-|
T Consensus 354 LPeaIHl-----L~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 354 LPEAIHL-----LPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred chhhhhh-----cCCcceeeccCCcCccCC
Confidence 3 33333 567777777754444444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=6.4e-15 Score=147.92 Aligned_cols=247 Identities=22% Similarity=0.251 Sum_probs=147.4
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCC
Q 006499 326 KSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLR 405 (643)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 405 (643)
.+|+.++++.. .++.. ......|.+|+.+.+..+ .+..... .+ ....+|+.|.+..+. + ..+.........
T Consensus 241 ~nl~~~dis~n-~l~~l--p~wi~~~~nle~l~~n~N-~l~~lp~-ri-~~~~~L~~l~~~~ne-l--~yip~~le~~~s 311 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNL--PEWIGACANLEALNANHN-RLVALPL-RI-SRITSLVSLSAAYNE-L--EYIPPFLEGLKS 311 (1081)
T ss_pred ccceeeecchh-hhhcc--hHHHHhcccceEecccch-hHHhhHH-HH-hhhhhHHHHHhhhhh-h--hhCCCcccccce
Confidence 45666666552 22221 233346667776666542 2211111 11 112445555554432 1 111112224567
Q ss_pred ccEEEcCCCCCCchhhhhhhccCC-CCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCC
Q 006499 406 LEEIDLTDCNGVNDKGLEYLSRCS-ELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 484 (643)
Q Consensus 406 L~~L~l~~c~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 484 (643)
|++|++.. +++.......+.-.. .|+.|+.+.+ .+.... ..-....+.|+.|.+.+ +.+++..+..+. ++++|+
T Consensus 312 L~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp-~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLK 386 (1081)
T KOG0618|consen 312 LRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLP-SYEENNHAALQELYLAN-NHLTDSCFPVLV-NFKHLK 386 (1081)
T ss_pred eeeeeehh-ccccccchHHHhhhhHHHHHHhhhhc-cccccc-cccchhhHHHHHHHHhc-Ccccccchhhhc-ccccee
Confidence 88888887 666654433332222 2444444432 111100 00011346678888887 588888887665 579999
Q ss_pred EEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEE
Q 006499 485 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN 564 (643)
Q Consensus 485 ~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 564 (643)
.|++++ +.+....-..+.+++.|++|+|+| ++++... ..+ .+|+.|+.|.-.+| .+... ..++. ++.|+.+|
T Consensus 387 VLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-~tv-a~~~~L~tL~ahsN-~l~~f--Pe~~~-l~qL~~lD 458 (1081)
T KOG0618|consen 387 VLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLP-DTV-ANLGRLHTLRAHSN-QLLSF--PELAQ-LPQLKVLD 458 (1081)
T ss_pred eeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhh-HHH-HhhhhhHHHhhcCC-ceeec--hhhhh-cCcceEEe
Confidence 999999 567666666788999999999999 5666544 233 37899999998887 55432 24444 49999999
Q ss_pred eccCCCCHHHHHHHHhhcccccccccccCCC
Q 006499 565 LSYCALSDMALCMVMGNMTRLQDAKLVHLTN 595 (643)
Q Consensus 565 l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~ 595 (643)
++.|+++.... ....-.|+|+.|++++...
T Consensus 459 lS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTL-PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhh-hhhCCCcccceeeccCCcc
Confidence 99999988777 3333448999999998864
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=5.9e-12 Score=112.91 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=123.0
Q ss_pred cCCCccEEEcCCCCCCchhhhhhh----ccCCCCcEeccCCCCCCChHHHHH------------HHhcCCCCcEEecCCC
Q 006499 402 FCLRLEEIDLTDCNGVNDKGLEYL----SRCSELLFLKLGLCENISDKGLFY------------IASNCLRIQGLDLYKC 465 (643)
Q Consensus 402 ~~~~L~~L~l~~c~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~------------l~~~~~~L~~L~l~~~ 465 (643)
.+|+|++++|++ +-+...++..+ ..+..|++|.+.+| .+...+-.. .+..-++|+++...+
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r- 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR- 166 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-
Confidence 456666666666 55555554432 34666666666665 444333222 123456788888776
Q ss_pred CCCChHHH---HHHHhcCCCCCEEecCCCCCCChHHHH----HhhcCCCCCeEeecCCCCcCHHHHHHH---HhcCCcCc
Q 006499 466 SGIGDDGL---AALSNGCKKLKKLNLSYCVNVTDRGME----HIRFIEDLSDLELRGLTKITSAGLTAL---AAGCKRLA 535 (643)
Q Consensus 466 ~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~ 535 (643)
+.+.+.+. ...++..+.|+.+.++. +.|...++. .+..|++|+.|+|.+ +.++..+-..+ ...++.|+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhe
Confidence 45555443 33445567888888887 466555543 344788888888888 45655544443 34557788
Q ss_pred EEecCCCCCCChHHHHHHH----hhcccCCeEEeccCCCCHHHHHHHH----hhcccccccccccCCC-CCHHHHHHH
Q 006499 536 DLDLKHCAKIDDSGFWALA----YYSQNLRQINLSYCALSDMALCMVM----GNMTRLQDAKLVHLTN-CTREGFELA 604 (643)
Q Consensus 536 ~L~l~~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~l----~~~~~L~~L~l~~c~~-~~~~~~~~~ 604 (643)
.|++++| .+.+.+..++. ...|+|+.|.+.+|.|+..+. ..+ ...|.|..|++.+|.- =.++++..+
T Consensus 245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-LALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred eeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHH-HHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 8888888 88777766655 446788888888888877665 333 3457788888888732 144555553
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.41 E-value=4.2e-15 Score=142.59 Aligned_cols=230 Identities=20% Similarity=0.176 Sum_probs=150.4
Q ss_pred CCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCC
Q 006499 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 457 (643)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 457 (643)
.++-.|+++++. |.... ..+.-++..|-.|++++ +.+... +..+.++.+|++|.+++++ +....+..+. .+.+|
T Consensus 126 Kn~iVLNLS~N~-IetIP-n~lfinLtDLLfLDLS~-NrLe~L-PPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL 199 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN-IETIP-NSLFINLTDLLFLDLSN-NRLEML-PPQIRRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSL 199 (1255)
T ss_pred cCcEEEEcccCc-cccCC-chHHHhhHhHhhhcccc-chhhhc-CHHHHHHhhhhhhhcCCCh-hhHHHHhcCc-cchhh
Confidence 455666666533 32111 11222566788899998 666543 3456678899999999863 3323333222 34566
Q ss_pred cEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEE
Q 006499 458 QGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADL 537 (643)
Q Consensus 458 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 537 (643)
+.|++++- +-+...++.-..++.+|..++++. +++.- ..+.+.++++|+.|+|++ +.++.-.+.. ....+|+.|
T Consensus 200 ~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPecly~l~~LrrLNLS~-N~iteL~~~~--~~W~~lEtL 273 (1255)
T KOG0444|consen 200 SVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSE-NNLPI-VPECLYKLRNLRRLNLSG-NKITELNMTE--GEWENLETL 273 (1255)
T ss_pred hhhhcccc-cchhhcCCCchhhhhhhhhccccc-cCCCc-chHHHhhhhhhheeccCc-CceeeeeccH--HHHhhhhhh
Confidence 66777663 223233333334567899999996 56653 356788899999999999 4565432211 124679999
Q ss_pred ecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCC-CCCHHHHHHHHHhcCCCCceeE
Q 006499 538 DLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT-NCTREGFELALRSCCMRIKKVK 616 (643)
Q Consensus 538 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~-~~~~~~~~~~~~~~c~~l~~l~ 616 (643)
++++| +++.. ...++. +++|+.|+..+|+++-+|+...++.+.+|+.+...+.. -+-++|+.+ |++|++++
T Consensus 274 NlSrN-QLt~L-P~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR-----C~kL~kL~ 345 (1255)
T KOG0444|consen 274 NLSRN-QLTVL-PDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR-----CVKLQKLK 345 (1255)
T ss_pred ccccc-hhccc-hHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh-----hHHHHHhc
Confidence 99998 76642 223333 48999999999998877776788888888888887653 245777777 99999999
Q ss_pred ecchhhhccCH
Q 006499 617 LLAPIRFLLSS 627 (643)
Q Consensus 617 l~~~~~~~~~~ 627 (643)
+..+.....|.
T Consensus 346 L~~NrLiTLPe 356 (1255)
T KOG0444|consen 346 LDHNRLITLPE 356 (1255)
T ss_pred ccccceeechh
Confidence 96555544443
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=8.2e-12 Score=112.04 Aligned_cols=254 Identities=21% Similarity=0.302 Sum_probs=124.8
Q ss_pred HHHHhccCCCccEEEcCCCccCHHHHHHHHh---cCCCCcEEeccCCCC--CCHH------HHHHHHhCCCCCcEEecCC
Q 006499 293 LLHHMRDLKNLEAITMDGARISDSCFQTISF---NCKSLVEIGLSKCLG--VTNT------GITQLVSGCVNLKTIDLTC 361 (643)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~--~~~~------~~~~~~~~~~~L~~L~l~~ 361 (643)
....+..+..++.++++++.+..++...+.. ..+.|+..++++... ..+. .+...+..+|+|+.+++++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4455566778888888888888776665553 335666666654211 1111 1112233567777777776
Q ss_pred CCCCCh---HHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhh------------cCCCccEEEcCCCCCCchhhhhhhc
Q 006499 362 CHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGS------------FCLRLEEIDLTDCNGVNDKGLEYLS 426 (643)
Q Consensus 362 ~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------------~~~~L~~L~l~~c~~~~~~~~~~l~ 426 (643)
+ .++. ..+..+..++..|++|.+.+|. +...+-..+.. .-++|+.+...+ +.+.+.+...
T Consensus 102 N-A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~-- 176 (382)
T KOG1909|consen 102 N-AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATA-- 176 (382)
T ss_pred c-ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHH--
Confidence 3 3332 3344555556667777776655 33333222221 224455555544 4444333322
Q ss_pred cCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHH---HHhcCCCCCEEecCCCCCCChHHHHH--
Q 006499 427 RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAA---LSNGCKKLKKLNLSYCVNVTDRGMEH-- 501 (643)
Q Consensus 427 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~-- 501 (643)
+....+..|.|+.+.+.. +.+...++.. -+..|++|+.|++.+ +-++..+-..
T Consensus 177 --------------------~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~La 234 (382)
T KOG1909|consen 177 --------------------LAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALA 234 (382)
T ss_pred --------------------HHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHH
Confidence 122223345555555544 2333333311 123455555555555 3333333222
Q ss_pred --hhcCCCCCeEeecCCCCcCHHHHHH----HHhcCCcCcEEecCCCCCCChHHHHHHH---hhcccCCeEEeccCCC--
Q 006499 502 --IRFIEDLSDLELRGLTKITSAGLTA----LAAGCKRLADLDLKHCAKIDDSGFWALA---YYSQNLRQINLSYCAL-- 570 (643)
Q Consensus 502 --l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~i~~~~~~~~~---~~~~~L~~L~l~~~~l-- 570 (643)
+..|++|++|++++| .+.+.|... +-+..|+|+.|.+.+| .|+..+...+. ..-|.|..|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e 312 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGE 312 (382)
T ss_pred HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccc
Confidence 224556666666665 233333222 2224456666666666 55554443333 1135666666666665
Q ss_pred CHHHH
Q 006499 571 SDMAL 575 (643)
Q Consensus 571 ~~~~~ 575 (643)
.+.++
T Consensus 313 ~de~i 317 (382)
T KOG1909|consen 313 KDEGI 317 (382)
T ss_pred cchhH
Confidence 44444
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-12 Score=119.57 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=142.4
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhh-ccCCC
Q 006499 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYL-SRCSE 430 (643)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l-~~~~~ 430 (643)
.+|+.+.+.++ .+...+.....+.||+++.|++++.-...-..+..+.+.+|+|+.|+++. +.+....-... ..+++
T Consensus 121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhh
Confidence 44444444442 22222222344445555555555432223344555666777777777776 44432211111 14678
Q ss_pred CcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCe
Q 006499 431 LLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSD 510 (643)
Q Consensus 431 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~ 510 (643)
|+.|.++.| .++...+..+...+|+|+.|.+..+..+....... .-+..|+.|+|++.+.++.......+.+|.|+.
T Consensus 199 lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhh
Confidence 899999998 78888888888899999999998864333222221 225789999999977777666667778999999
Q ss_pred EeecCCCCcCHH-----HHHHHHhcCCcCcEEecCCCCCCChHH-HHHHHhhcccCCeEEeccCCCCHHHHH---HHHhh
Q 006499 511 LELRGLTKITSA-----GLTALAAGCKRLADLDLKHCAKIDDSG-FWALAYYSQNLRQINLSYCALSDMALC---MVMGN 581 (643)
Q Consensus 511 L~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~l~~ 581 (643)
|+++.| .+.+. +.......+++|+.|++..| +|.+.. +.++ ..+++|+.|.+..|.++.+.-. ..++.
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l-~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr 352 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL-RTLENLKHLRITLNYLNKETDTAKLLVIAR 352 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchh-hccchhhhhhcccccccccccceeEEeeee
Confidence 999886 33322 12223446789999999998 665433 2333 3457888888888876543221 22345
Q ss_pred cccccccccccC
Q 006499 582 MTRLQDAKLVHL 593 (643)
Q Consensus 582 ~~~L~~L~l~~c 593 (643)
.++|..|+=.+|
T Consensus 353 ~~~l~~LN~~di 364 (505)
T KOG3207|consen 353 ISQLVKLNDVDI 364 (505)
T ss_pred hhhhhhhccccc
Confidence 555555554444
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.9e-11 Score=112.90 Aligned_cols=210 Identities=21% Similarity=0.196 Sum_probs=90.7
Q ss_pred CCCccEEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006499 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (643)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (643)
+++|+.+.++++.+...+.......|++++.|+++..--.....+..+++.+|+|+.|+++.+. +....-......+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhh
Confidence 3344444444444433333333345555555555542112233444455555555555555432 111100111113455
Q ss_pred CcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcE
Q 006499 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQG 459 (643)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 459 (643)
|+.|.++.|. ++...+..+...+|+|+.|.+.. +..-.........+..|+.|+|+++..++..... ....+|.|+.
T Consensus 199 lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~-N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEA-NEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-KVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhc-ccccceecchhhhhhHHhhccccCCccccccccc-ccccccchhh
Confidence 5666666555 44444444444556666666655 3211111111112445555666555333322222 2224555555
Q ss_pred EecCCCCCCCh-----HHHHHHHhcCCCCCEEecCCCCCCCh-HHHHHhhcCCCCCeEeecC
Q 006499 460 LDLYKCSGIGD-----DGLAALSNGCKKLKKLNLSYCVNVTD-RGMEHIRFIEDLSDLELRG 515 (643)
Q Consensus 460 L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~L~~L~l~~ 515 (643)
|.++.| .+++ .+.......+++|+.|++.. +.+.+ ..+..+..+++|+.|.+..
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 555554 2221 11112233456666666665 33322 2233444455666665544
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.02 E-value=3.8e-12 Score=116.03 Aligned_cols=109 Identities=23% Similarity=0.205 Sum_probs=54.8
Q ss_pred HhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhh
Q 006499 477 SNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYY 556 (643)
Q Consensus 477 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 556 (643)
...+++|..|++++ +.+.+. ...++.+..|+.|+++.+ .+.. .....--...|+.+-.+++ ++.......+. .
T Consensus 431 l~~l~kLt~L~L~N-N~Ln~L-P~e~~~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~n-qi~~vd~~~l~-n 503 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSN-NLLNDL-PEEMGSLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASNN-QIGSVDPSGLK-N 503 (565)
T ss_pred HHhhhcceeeeccc-chhhhc-chhhhhhhhhheeccccc-cccc--chHHHhhHHHHHHHHhccc-cccccChHHhh-h
Confidence 34467777777775 333322 223445556777777664 2221 1111101122333333334 55443333222 3
Q ss_pred cccCCeEEeccCCCCHHHHHHHHhhcccccccccccCC
Q 006499 557 SQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 594 (643)
Q Consensus 557 ~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~ 594 (643)
+++|..|++.+|.+..... .++++.+|+.|++++.+
T Consensus 504 m~nL~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCchhhCCh--hhccccceeEEEecCCc
Confidence 4677777777776554433 56677777777776654
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.83 E-value=1.3e-09 Score=70.25 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=33.1
Q ss_pred cccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhcc
Q 006499 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (643)
Q Consensus 7 ~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (643)
|..||+||+.+||+||+ ..|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999999 999999999999999988554
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.82 E-value=1.5e-08 Score=105.26 Aligned_cols=143 Identities=19% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHH
Q 006499 446 GLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLT 525 (643)
Q Consensus 446 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 525 (643)
....+...+|+|++|.+.+- .+....+..++.++|+|..||++++ ++++- ..++++.+|+.|.+.+.+--....+.
T Consensus 139 W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred HHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHHHHhccCCCCCchhhHH
Confidence 33444445566666665552 3333335555556666666666653 34332 34555666666666553322223444
Q ss_pred HHHhcCCcCcEEecCCCCCCChHH-HHHH---HhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccC
Q 006499 526 ALAAGCKRLADLDLKHCAKIDDSG-FWAL---AYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 593 (643)
Q Consensus 526 ~~~~~~~~L~~L~l~~~~~i~~~~-~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c 593 (643)
.++ .+++|+.||||.-.+..+.. +... ...+|+|+.||.|+..+....+...+..-|+|+.+.+.+|
T Consensus 215 ~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 215 DLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 444 46666666666543333321 1111 1335677777777776666666455555666666665544
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.79 E-value=5.5e-11 Score=108.60 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=50.8
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCC
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 532 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 532 (643)
.+++|.-|++++. .+.+- +.-..++..|+.|+++.. .... -.+.+.....|+.+-.++ +.+.......+ .++.
T Consensus 433 ~l~kLt~L~L~NN-~Ln~L--P~e~~~lv~Lq~LnlS~N-rFr~-lP~~~y~lq~lEtllas~-nqi~~vd~~~l-~nm~ 505 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDL--PEEMGSLVRLQTLNLSFN-RFRM-LPECLYELQTLETLLASN-NQIGSVDPSGL-KNMR 505 (565)
T ss_pred hhhcceeeecccc-hhhhc--chhhhhhhhhheeccccc-cccc-chHHHhhHHHHHHHHhcc-ccccccChHHh-hhhh
Confidence 4566666776652 22211 111123455777777662 2221 111122222233333322 34443333222 2466
Q ss_pred cCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCC
Q 006499 533 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 571 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 571 (643)
+|..||+.+| .+. .+....+.+.+|++|++++|++.
T Consensus 506 nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCC-chh--hCChhhccccceeEEEecCCccC
Confidence 7777777666 332 22333455677777777777654
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.76 E-value=1.1e-08 Score=106.67 Aligned_cols=262 Identities=17% Similarity=0.086 Sum_probs=131.6
Q ss_pred CCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCCC
Q 006499 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (643)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 328 (643)
..-..|+++.+ .++. ++..+ .++|+.|.+.++.. .. + -...++|++|++++|.++.. . ...++|
T Consensus 201 ~~~~~LdLs~~-~Lts--LP~~l--~~~L~~L~L~~N~L--t~--L--P~lp~~Lk~LdLs~N~LtsL--P---~lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES-GLTT--LPDCL--PAHITTLVIPDNNL--TS--L--PALPPELRTLEVSGNQLTSL--P---VLPPGL 264 (788)
T ss_pred CCCcEEEcCCC-CCCc--CCcch--hcCCCEEEccCCcC--CC--C--CCCCCCCcEEEecCCccCcc--c---Cccccc
Confidence 44556666653 2321 12111 13677777776542 11 0 01245777788777765532 1 123577
Q ss_pred cEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccE
Q 006499 329 VEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408 (643)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 408 (643)
++|++.++ .+. .+.....+|+.|++.++ .++. +....++|+.|+++++. +.. +.....+|+.
T Consensus 265 ~~L~Ls~N-~L~-----~Lp~lp~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N~-L~~-----Lp~lp~~L~~ 326 (788)
T PRK15387 265 LELSIFSN-PLT-----HLPALPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDNQ-LAS-----LPALPSELCK 326 (788)
T ss_pred ceeeccCC-chh-----hhhhchhhcCEEECcCC-cccc-----ccccccccceeECCCCc-ccc-----CCCCcccccc
Confidence 77777663 232 12223356777777664 2332 11223667777777643 322 1111245666
Q ss_pred EEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEec
Q 006499 409 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 488 (643)
Q Consensus 409 L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 488 (643)
|++++ +.++... . ..++|+.|++++| .++.. ....++|+.|+++++ .++. +.. ...+|+.|++
T Consensus 327 L~Ls~-N~L~~LP--~--lp~~Lq~LdLS~N-~Ls~L-----P~lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdL 389 (788)
T PRK15387 327 LWAYN-NQLTSLP--T--LPSGLQELSVSDN-QLASL-----PTLPSELYKLWAYNN-RLTS--LPA---LPSGLKELIV 389 (788)
T ss_pred ccccc-Ccccccc--c--cccccceEecCCC-ccCCC-----CCCCcccceehhhcc-cccc--Ccc---cccccceEEe
Confidence 77766 4444311 1 1236777777765 34321 112356666666653 3432 221 1246777777
Q ss_pred CCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccC
Q 006499 489 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC 568 (643)
Q Consensus 489 ~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 568 (643)
+++ .++... ...++|+.|++++| .++. +.. ...+|+.|++++| +++.. ...+ ..+++|+.|++++|
T Consensus 390 s~N-~Lt~LP----~l~s~L~~LdLS~N-~Lss--IP~---l~~~L~~L~Ls~N-qLt~L-P~sl-~~L~~L~~LdLs~N 455 (788)
T PRK15387 390 SGN-RLTSLP----VLPSELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRN-QLTRL-PESL-IHLSSETTVNLEGN 455 (788)
T ss_pred cCC-cccCCC----CcccCCCEEEccCC-cCCC--CCc---chhhhhhhhhccC-ccccc-ChHH-hhccCCCeEECCCC
Confidence 763 444211 01356777777774 3432 111 1245677777776 56532 1122 23467777777777
Q ss_pred CCCHHHH
Q 006499 569 ALSDMAL 575 (643)
Q Consensus 569 ~l~~~~~ 575 (643)
+++...+
T Consensus 456 ~Ls~~~~ 462 (788)
T PRK15387 456 PLSERTL 462 (788)
T ss_pred CCCchHH
Confidence 7776555
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=9.9e-10 Score=100.41 Aligned_cols=92 Identities=15% Similarity=0.026 Sum_probs=60.0
Q ss_pred HhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhcc
Q 006499 348 VSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR 427 (643)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~ 427 (643)
+..+++|+.|++++ +.++...-. .++....+++|.+..+. +... -..+...+..|+.|++++ +.++...+.++..
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~-aFe~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDG-AFEGAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhh-hhcchhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecC-CeeEEEecccccc
Confidence 46778888888887 344433222 22345677777776632 2211 122334678899999999 8888888888888
Q ss_pred CCCCcEeccCCCCCCCh
Q 006499 428 CSELLFLKLGLCENISD 444 (643)
Q Consensus 428 ~~~L~~L~l~~~~~~~~ 444 (643)
+..|.+|++-.++.--+
T Consensus 345 ~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cceeeeeehccCcccCc
Confidence 88888888876654333
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=1.1e-08 Score=106.80 Aligned_cols=244 Identities=15% Similarity=0.063 Sum_probs=136.5
Q ss_pred CCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCCC
Q 006499 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (643)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 328 (643)
++|+.|.+.++ .++. + ....++|++|+++++.. ... . ...++|+.|++.+|.+.. +. ....+|
T Consensus 222 ~~L~~L~L~~N-~Lt~--L---P~lp~~Lk~LdLs~N~L--tsL--P--~lp~sL~~L~Ls~N~L~~--Lp---~lp~~L 284 (788)
T PRK15387 222 AHITTLVIPDN-NLTS--L---PALPPELRTLEVSGNQL--TSL--P--VLPPGLLELSIFSNPLTH--LP---ALPSGL 284 (788)
T ss_pred cCCCEEEccCC-cCCC--C---CCCCCCCcEEEecCCcc--Ccc--c--CcccccceeeccCCchhh--hh---hchhhc
Confidence 46788888763 3332 1 12357788888877643 111 1 123578888888776542 11 133567
Q ss_pred cEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCccE
Q 006499 329 VEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408 (643)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 408 (643)
+.|++.++ .++.. ....++|+.|+++++ .+.. +....+.|+.|.++++. ++. +....++|++
T Consensus 285 ~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N-~L~~-----Lp~lp~~L~~L~Ls~N~-L~~-----LP~lp~~Lq~ 346 (788)
T PRK15387 285 CKLWIFGN-QLTSL-----PVLPPGLQELSVSDN-QLAS-----LPALPSELCKLWAYNNQ-LTS-----LPTLPSGLQE 346 (788)
T ss_pred CEEECcCC-ccccc-----cccccccceeECCCC-cccc-----CCCCcccccccccccCc-ccc-----ccccccccce
Confidence 78888774 34321 123467888888764 3332 11122467777777643 321 1111247888
Q ss_pred EEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEec
Q 006499 409 IDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNL 488 (643)
Q Consensus 409 L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 488 (643)
|++++ +.++.... ..++|+.|+++++ .++. + .....+|+.|+++++ .++. +.. ..++|+.|++
T Consensus 347 LdLS~-N~Ls~LP~----lp~~L~~L~Ls~N-~L~~--L---P~l~~~L~~LdLs~N-~Lt~--LP~---l~s~L~~LdL 409 (788)
T PRK15387 347 LSVSD-NQLASLPT----LPSELYKLWAYNN-RLTS--L---PALPSGLKELIVSGN-RLTS--LPV---LPSELKELMV 409 (788)
T ss_pred EecCC-CccCCCCC----CCcccceehhhcc-cccc--C---cccccccceEEecCC-cccC--CCC---cccCCCEEEc
Confidence 88888 66664221 1356777777765 4432 1 122457888888774 4442 111 1357888888
Q ss_pred CCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHH
Q 006499 489 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWAL 553 (643)
Q Consensus 489 ~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~ 553 (643)
+++ .++... . ...+|+.|++++| .++. +..-+..+++|+.|++++| .++......+
T Consensus 410 S~N-~LssIP--~--l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 410 SGN-RLTSLP--M--LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred cCC-cCCCCC--c--chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCC-CCCchHHHHH
Confidence 874 454321 1 1246777888774 4542 2222336788888888888 6766554444
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=8.1e-10 Score=100.97 Aligned_cols=87 Identities=23% Similarity=0.183 Sum_probs=38.2
Q ss_pred hcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhc
Q 006499 478 NGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYS 557 (643)
Q Consensus 478 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~ 557 (643)
+.+++|++|++++ +.++...-.+|.....+++|.|.+ +++... -..++.++..|+.|++++| +|+-.....+.. .
T Consensus 271 ~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~-~ 345 (498)
T KOG4237|consen 271 KKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT-L 345 (498)
T ss_pred hhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCC-eeEEEecccccc-c
Confidence 3445555555554 345544444455555555555544 222211 1223334455555555555 444322222211 2
Q ss_pred ccCCeEEeccCC
Q 006499 558 QNLRQINLSYCA 569 (643)
Q Consensus 558 ~~L~~L~l~~~~ 569 (643)
.+|.+|.+-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 345555555444
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.70 E-value=8.2e-08 Score=99.91 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCccEEEcCCCCCCchhhhhhhcc-CCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006499 404 LRLEEIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 482 (643)
Q Consensus 404 ~~L~~L~l~~c~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 482 (643)
.+|++|++++-..+....+..++. +|+|++|.+.+- .+....+..+..++|+|..|+++++ ++++- .-.+.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhcccc
Confidence 455555555533333333334443 555666555552 4444445555556666666666664 33321 11123456
Q ss_pred CCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHH-HHHHH---HhcCCcCcEEecCCCCCCChHHHHHHHhhcc
Q 006499 483 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA-GLTAL---AAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 558 (643)
Q Consensus 483 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~---~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 558 (643)
|+.|.+.+-+--+...+..+..+.+|+.||++.-...... .+... ...+|.|+.||.++. .+++..++.+...-|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 6666555533333344555556666666666653222221 11111 123566666666665 666655555554445
Q ss_pred cCCeEE
Q 006499 559 NLRQIN 564 (643)
Q Consensus 559 ~L~~L~ 564 (643)
+|+.+.
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 555544
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=7.5e-08 Score=84.94 Aligned_cols=168 Identities=14% Similarity=0.070 Sum_probs=88.6
Q ss_pred HHHhhcCCCccEEEcCCCCCCchhhhhhh-ccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCC----CCChH
Q 006499 397 YQLGSFCLRLEEIDLTDCNGVNDKGLEYL-SRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS----GIGDD 471 (643)
Q Consensus 397 ~~l~~~~~~L~~L~l~~c~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~l~~~ 471 (643)
..+.+++|.|+.|+++. +.+.... ..+ ....+|+.|.+.+ ..++..........+|.+++|+++.++ ++.++
T Consensus 90 ~~ile~lP~l~~LNls~-N~L~s~I-~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~ 166 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSC-NSLSSDI-KSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN 166 (418)
T ss_pred HHHHhcCccceEeeccC-CcCCCcc-ccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccc
Confidence 33444555555555554 4443221 112 2445666666665 355555555555566666666665531 22222
Q ss_pred HHHHHHhcCCCCCEEecCCCCCCChHHHHHhh-cCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHH
Q 006499 472 GLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGF 550 (643)
Q Consensus 472 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 550 (643)
..+.+ -+.+++|++..|....-...-.++ -+|++..+.+..|+ +.+..-..-.+.+|.+--|+++.+ +|.+...
T Consensus 167 c~e~~---s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswas 241 (418)
T KOG2982|consen 167 CIEDW---STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWAS 241 (418)
T ss_pred ccccc---chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHH
Confidence 22221 245666666655321111111222 36777777777764 444343344445666777777776 6766554
Q ss_pred HHHHhhcccCCeEEeccCCCCH
Q 006499 551 WALAYYSQNLRQINLSYCALSD 572 (643)
Q Consensus 551 ~~~~~~~~~L~~L~l~~~~l~~ 572 (643)
..-...+++|..|.++++++.+
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHcCCchhheeeccCCcccc
Confidence 4444556777888888777654
No 33
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.50 E-value=2.1e-08 Score=65.21 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=33.6
Q ss_pred ccccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhccc
Q 006499 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR 46 (643)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~ 46 (643)
+|.+||+|++.+||+||+ ..|+.+++.|||+|++++....
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCCC
Confidence 578999999999999999 9999999999999999886543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=4e-08 Score=86.71 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=81.5
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCc
Q 006499 454 CLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKR 533 (643)
Q Consensus 454 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 533 (643)
.+.|++++++++ .++. +.+-++-.|.++.|++++ +.+... ..++.+++|+.|+++++. ++ .+..+-..+-+
T Consensus 283 Wq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~v--~nLa~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRTV--QNLAELPQLQLLDLSGNL-LA--ECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceeee--hhhhhcccceEeecccch-hH--hhhhhHhhhcC
Confidence 355777787763 3432 222233458888888887 455443 346778888888888742 32 22233335678
Q ss_pred CcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCC
Q 006499 534 LADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 594 (643)
Q Consensus 534 L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~ 594 (643)
.++|.+++| .+.+. ..+ ..+-+|..|++++|+|........++++|.|+.+.+.+.+
T Consensus 354 IKtL~La~N-~iE~L--SGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETL--SGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhh-hHhhh--hhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 888888877 44321 111 2346788888888887776665778888888888887765
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=5e-08 Score=82.46 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=43.2
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCC
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 532 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 532 (643)
++.++++|++.++ .++. ++.+...+.+|+.|++++| .++. ++.+..+++|+.|++++ +.++..+ ..+...+|
T Consensus 17 n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEGLPGLPRLKTLDLSN-NRISSIS-EGLDKNLP 88 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S----TT----TT--EEE--S-S---S-C-HHHHHH-T
T ss_pred ccccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccCccChhhhhhcccCC-CCCCccc-cchHHhCC
Confidence 3456777888774 3332 2333334577888888874 5543 23456677888888877 3454432 12223567
Q ss_pred cCcEEecCCCCCCChHH-HHHHHhhcccCCeEEeccCCCCHHHH--HHHHhhcccccccccccC
Q 006499 533 RLADLDLKHCAKIDDSG-FWALAYYSQNLRQINLSYCALSDMAL--CMVMGNMTRLQDAKLVHL 593 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~l~~~~~L~~L~l~~c 593 (643)
+|+.|++++| .|.+.. +..+ ..+|+|+.|++.+|++++..- ...+..+|+|+.|+-...
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8888888777 665432 2222 345778888888887653211 134567777777775544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=1.3e-07 Score=79.97 Aligned_cols=131 Identities=22% Similarity=0.240 Sum_probs=44.2
Q ss_pred cCCCccEEEcCCCCCCchhhhhhhc-cCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcC
Q 006499 402 FCLRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGC 480 (643)
Q Consensus 402 ~~~~L~~L~l~~c~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 480 (643)
++.++++|++.+ +.++.. ..++ .+.+|+.|++++| .++... .+ ..+++|++|++++ +.++..+ ..+...+
T Consensus 17 n~~~~~~L~L~~-n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~l~--~l-~~L~~L~~L~L~~-N~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTI--ENLGATLDKLEVLDLSNN-QITKLE--GL-PGLPRLKTLDLSN-NRISSIS-EGLDKNL 87 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--T--T-----TT--EEE--S-S---S-C-HHHHHH-
T ss_pred cccccccccccc-cccccc--cchhhhhcCCCEEECCCC-CCcccc--Cc-cChhhhhhcccCC-CCCCccc-cchHHhC
Confidence 345678888888 566553 3444 4678888888886 444321 11 2467788888877 3555432 1222347
Q ss_pred CCCCEEecCCCCCCCh-HHHHHhhcCCCCCeEeecCCCCcCHHH-HHHHHhcCCcCcEEecCCC
Q 006499 481 KKLKKLNLSYCVNVTD-RGMEHIRFIEDLSDLELRGLTKITSAG-LTALAAGCKRLADLDLKHC 542 (643)
Q Consensus 481 ~~L~~L~l~~c~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 542 (643)
|+|+.|++++ +.+.+ ..+..+..+|+|+.|++.+||--.... -..+...+|+|+.||-...
T Consensus 88 p~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8888888877 45544 234566677888888888765332222 2334456777777776543
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=7.8e-06 Score=71.59 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=59.2
Q ss_pred cCCCCcEEecCCCCCCChHHHHH---HHhcCCCCCEEecCCCCCCChHHHHHhh-----cCCCCCeEeecCCCCcCHHHH
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAA---LSNGCKKLKKLNLSYCVNVTDRGMEHIR-----FIEDLSDLELRGLTKITSAGL 524 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~ 524 (643)
.-|.|++..... +.+...+... ....-.+|+.+.+.. +.|...++..+. .+.+|+.|+|.++ -++..+.
T Consensus 155 ~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS 231 (388)
T COG5238 155 DKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGS 231 (388)
T ss_pred cCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhH
Confidence 345666665544 2333222222 222224666676666 466665544332 4667777777663 3444443
Q ss_pred HHHH---hcCCcCcEEecCCCCCCChHHHHHHH-----hhcccCCeEEeccCC
Q 006499 525 TALA---AGCKRLADLDLKHCAKIDDSGFWALA-----YYSQNLRQINLSYCA 569 (643)
Q Consensus 525 ~~~~---~~~~~L~~L~l~~~~~i~~~~~~~~~-----~~~~~L~~L~l~~~~ 569 (643)
.++. ...+.|+.|.+.+| .++..+...+. ...|+|+.|...+|.
T Consensus 232 ~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 3332 23355677777777 66665555544 234566677666664
No 38
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.34 E-value=3.8e-07 Score=57.04 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhcc
Q 006499 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (643)
Q Consensus 10 LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~ 45 (643)
||+|++.+||.+++ ..|+.+++.|||+|+.+....
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999 999999999999999987554
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=9.3e-07 Score=73.85 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCC-CCHHHHHHHHhhccccc
Q 006499 508 LSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA-LSDMALCMVMGNMTRLQ 586 (643)
Q Consensus 508 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~ 586 (643)
++.++-++ ..+..+|+..+- .+++++.|.+.+|..+.|.+++.+....++|+.|++++|+ ||+.++ ..+..+++|+
T Consensus 103 IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLR 179 (221)
T ss_pred EEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhH
Confidence 34455544 345556666554 5777777888888788888888888777888888888887 888888 8888888888
Q ss_pred ccccccCCCCC-HHHHHHHHHhcCCCCce
Q 006499 587 DAKLVHLTNCT-REGFELALRSCCMRIKK 614 (643)
Q Consensus 587 ~L~l~~c~~~~-~~~~~~~~~~~c~~l~~ 614 (643)
.|.+.+.+.+. .+..+..+....|+...
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 88888887664 34444444443454443
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=3.6e-07 Score=80.78 Aligned_cols=207 Identities=15% Similarity=0.105 Sum_probs=142.2
Q ss_pred EEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhh--hhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcE
Q 006499 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQG 459 (643)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 459 (643)
-+.+.+|..-+...+..+.+.+..++++++.+ +.+++-. ...+.++|.|+.|+++.++ +.. .+..+..-..+|++
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceEE
Confidence 34444444333334555666788899999998 7887632 2335579999999999863 332 22222223568999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCCEEecCCCC----CCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCc
Q 006499 460 LDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCV----NVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLA 535 (643)
Q Consensus 460 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~----~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 535 (643)
|.+.+ ..+...........+|.++.|+++.++ ++.+...+. --+.++.|...+|..........+..-+|++.
T Consensus 126 lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 126 LVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 99987 567777777777888999999888742 122222221 12467778887876554445555566689999
Q ss_pred EEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCCC
Q 006499 536 DLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN 595 (643)
Q Consensus 536 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~ 595 (643)
.+.+-.| .+.+...+.-...+|.+.-|+++.++|.+-.....+..+++|..|.+++-+-
T Consensus 203 sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 203 SVFVCEG-PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred heeeecC-cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 9999998 5665555555556688889999999988765558899999999999988754
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=9e-07 Score=73.93 Aligned_cols=79 Identities=28% Similarity=0.386 Sum_probs=45.7
Q ss_pred CCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcC
Q 006499 441 NISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKIT 520 (643)
Q Consensus 441 ~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 520 (643)
.+...++..+. .+++++.|.+.+|.++.|.++..+..-.++|+.|+|++|+.|++.++..+.++++|+.|.+.+.+.+.
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 34444444443 35555555555555555555555555556666666666666666666666666666666666554443
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=3.8e-05 Score=67.40 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=35.1
Q ss_pred CcCcEEecCCCCCCChHHHHHHH----hhcccCCeEEeccCCCCHHHH---HHHHhhcccccccccccCCCCCHHHHHHH
Q 006499 532 KRLADLDLKHCAKIDDSGFWALA----YYSQNLRQINLSYCALSDMAL---CMVMGNMTRLQDAKLVHLTNCTREGFELA 604 (643)
Q Consensus 532 ~~L~~L~l~~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~---~~~l~~~~~L~~L~l~~c~~~~~~~~~~~ 604 (643)
..|+.+.+..| .|...++..+. ..+.+|+.|++.+|-++..+- ..++..++.|+.|.+.+| -++-+|..++
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHH
Confidence 35555666555 55555444333 234556666666665443322 233445555666666666 3333444433
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=9.8e-06 Score=85.65 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 006499 404 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKL 483 (643)
Q Consensus 404 ~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 483 (643)
++|+.|++++ +.++.... .+ .++|+.|++++| .++.... ...++|+.|++.+| .++. +... -+++|
T Consensus 283 ~sL~~L~Ls~-N~Lt~LP~-~l--p~sL~~L~Ls~N-~Lt~LP~----~l~~sL~~L~Ls~N-~Lt~--LP~~--l~~sL 348 (754)
T PRK15370 283 EELRYLSVYD-NSIRTLPA-HL--PSGITHLNVQSN-SLTALPE----TLPPGLKTLEAGEN-ALTS--LPAS--LPPEL 348 (754)
T ss_pred CCCcEEECCC-CccccCcc-cc--hhhHHHHHhcCC-ccccCCc----cccccceeccccCC-cccc--CChh--hcCcc
Confidence 4566777766 44443211 11 135666666664 3331110 11356777777765 3332 1110 12577
Q ss_pred CEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChH--HHHHHHhhcccCC
Q 006499 484 KKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDS--GFWALAYYSQNLR 561 (643)
Q Consensus 484 ~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~--~~~~~~~~~~~L~ 561 (643)
+.|++++| .++... ..+ .++|+.|+|++| .++... ..+. .+|+.|++++| ++... .+......++++.
T Consensus 349 ~~L~Ls~N-~L~~LP-~~l--p~~L~~LdLs~N-~Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 349 QVLDVSKN-QITVLP-ETL--PPTITTLDVSRN-ALTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred cEEECCCC-CCCcCC-hhh--cCCcCEEECCCC-cCCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhhcCCCcc
Confidence 78888774 444221 112 257788888775 343211 1111 35777888877 55432 2333334457778
Q ss_pred eEEeccCCCCHHHH
Q 006499 562 QINLSYCALSDMAL 575 (643)
Q Consensus 562 ~L~l~~~~l~~~~~ 575 (643)
.|++.+|+++...+
T Consensus 419 ~L~L~~Npls~~tl 432 (754)
T PRK15370 419 RIIVEYNPFSERTI 432 (754)
T ss_pred EEEeeCCCccHHHH
Confidence 88888888775444
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.15 E-value=1.8e-06 Score=92.72 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=16.1
Q ss_pred CCCCcEeeCCCCCC-CChHHHHHhhhccCCcEEecCC
Q 006499 121 CPLLESVDLSYCCG-FGDREAAALSFASGLKEVKLDK 156 (643)
Q Consensus 121 ~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~ 156 (643)
+++|++|-+..... +.......|..+|.|+.|++++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 44555555554321 2222233344455555555554
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.98 E-value=2e-05 Score=83.43 Aligned_cols=253 Identities=15% Similarity=0.064 Sum_probs=149.6
Q ss_pred CccEEEcCCCccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCc
Q 006499 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (643)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 381 (643)
+...|.+++..++.... . -.+.++.|+++++ .++... . ..+++|+.|+++++ .++.... . ..++|+
T Consensus 179 ~~~~L~L~~~~LtsLP~-~---Ip~~L~~L~Ls~N-~LtsLP--~--~l~~nL~~L~Ls~N-~LtsLP~-~---l~~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-C---IPEQITTLILDNN-ELKSLP--E--NLQGNIKTLYANSN-QLTSIPA-T---LPDTIQ 244 (754)
T ss_pred CceEEEeCCCCcCcCCc-c---cccCCcEEEecCC-CCCcCC--h--hhccCCCEEECCCC-ccccCCh-h---hhcccc
Confidence 45667776665442111 1 1257999999884 455321 1 12368999999975 3432110 1 125799
Q ss_pred EEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEe
Q 006499 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLD 461 (643)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 461 (643)
.|+++++. +.... ..+ ..+|+.|++++ +.++... ..+ .++|+.|++++| .++.... . ..++|+.|+
T Consensus 245 ~L~Ls~N~-L~~LP-~~l---~s~L~~L~Ls~-N~L~~LP-~~l--~~sL~~L~Ls~N-~Lt~LP~-~---lp~sL~~L~ 310 (754)
T PRK15370 245 EMELSINR-ITELP-ERL---PSALQSLDLFH-NKISCLP-ENL--PEELRYLSVYDN-SIRTLPA-H---LPSGITHLN 310 (754)
T ss_pred EEECcCCc-cCcCC-hhH---hCCCCEEECcC-CccCccc-ccc--CCCCcEEECCCC-ccccCcc-c---chhhHHHHH
Confidence 99999865 33211 111 25799999997 6776422 222 358999999987 4442110 0 124688888
Q ss_pred cCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCC
Q 006499 462 LYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKH 541 (643)
Q Consensus 462 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 541 (643)
++++ .++.. ... -.++|+.|++++| .++... ..+ .++|+.|++++| .++... ..+ .++|+.|++++
T Consensus 311 Ls~N-~Lt~L--P~~--l~~sL~~L~Ls~N-~Lt~LP-~~l--~~sL~~L~Ls~N-~L~~LP-~~l---p~~L~~LdLs~ 376 (754)
T PRK15370 311 VQSN-SLTAL--PET--LPPGLKTLEAGEN-ALTSLP-ASL--PPELQVLDVSKN-QITVLP-ETL---PPTITTLDVSR 376 (754)
T ss_pred hcCC-ccccC--Ccc--ccccceeccccCC-ccccCC-hhh--cCcccEEECCCC-CCCcCC-hhh---cCCcCEEECCC
Confidence 8875 44421 111 1368999999986 444321 112 368999999986 454211 112 36899999999
Q ss_pred CCCCChHHHHHHHhhcccCCeEEeccCCCCHH--HHHHHHhhcccccccccccCCCCCHHHHH
Q 006499 542 CAKIDDSGFWALAYYSQNLRQINLSYCALSDM--ALCMVMGNMTRLQDAKLVHLTNCTREGFE 602 (643)
Q Consensus 542 ~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~l~~~~~L~~L~l~~c~~~~~~~~~ 602 (643)
| .++... ..+ ..+|+.|++++|+++.. .+......++.+..|.+.+. .++...+.
T Consensus 377 N-~Lt~LP-~~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~ 433 (754)
T PRK15370 377 N-ALTNLP-ENL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQ 433 (754)
T ss_pred C-cCCCCC-HhH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHH
Confidence 8 666421 112 24788999999987643 22134455688888888776 45444444
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.86 E-value=9e-06 Score=87.42 Aligned_cols=233 Identities=18% Similarity=0.130 Sum_probs=98.3
Q ss_pred CCCCcEEEeccccccChhhHHHHHhcCCCccEEecCCCCCcccHHHHHHhccCCCccEEEcCCCccCHHHHHHHHhcCCC
Q 006499 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (643)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (643)
+++|++|-+.+...--......++..+|.|+.|+++++. .....+..++.+-+|++|+++++.+.. ++.-...+..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHh
Confidence 455666555442110011112234446666666666543 122344455555566666666665541 1111114445
Q ss_pred CcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHhhcCCCcc
Q 006499 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (643)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (643)
|.+|++......... ..+...+++|++|.+.....-.+.....-...+.+|+.+.+.... ...+..+. ..+.|.
T Consensus 620 L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~-~~~~L~ 693 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLL-GMTRLR 693 (889)
T ss_pred hheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhh-hhHHHH
Confidence 666666543222111 223334666666666543211111111111233444444443211 11111111 112222
Q ss_pred ----EEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHH----HHh-cCCCCcEEecCCCCCCChHHHHHHHh
Q 006499 408 ----EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFY----IAS-NCLRIQGLDLYKCSGIGDDGLAALSN 478 (643)
Q Consensus 408 ----~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----l~~-~~~~L~~L~l~~~~~l~~~~~~~~~~ 478 (643)
.+.+.+| ........+..+.+|+.|.+.+|.. .+..+.. ... .++++..+.+.+|....+.... .
T Consensus 694 ~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~-~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~ 767 (889)
T KOG4658|consen 694 SLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGI-SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---L 767 (889)
T ss_pred HHhHhhhhccc--ccceeecccccccCcceEEEEcCCC-chhhcccccccchhhhHHHHHHHHhhccccccccchh---h
Confidence 2222111 1112233345567777777777632 2111100 000 2455666666666544432221 1
Q ss_pred cCCCCCEEecCCCCCCCh
Q 006499 479 GCKKLKKLNLSYCVNVTD 496 (643)
Q Consensus 479 ~~~~L~~L~l~~c~~l~~ 496 (643)
..|+|+.|.+.+|..+.+
T Consensus 768 f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred ccCcccEEEEeccccccc
Confidence 247888888888766554
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=7.4e-06 Score=72.75 Aligned_cols=132 Identities=20% Similarity=0.091 Sum_probs=86.1
Q ss_pred ccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcC
Q 006499 426 SRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFI 505 (643)
Q Consensus 426 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 505 (643)
.....|++++++++ .++. +..-.+..|+++.|+++++ .+...+- ...+++|+.|++++ +.++... ..-.++
T Consensus 281 dTWq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~-N~Ls~~~-Gwh~KL 351 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSG-NLLAECV-GWHLKL 351 (490)
T ss_pred chHhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceeeehh---hhhcccceEeeccc-chhHhhh-hhHhhh
Confidence 34667888888875 3432 2222335689999999985 4443221 22478999999998 4554321 223368
Q ss_pred CCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCC
Q 006499 506 EDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 571 (643)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 571 (643)
.+.+.|.++++ .+. .+..+ ..+.+|..||+++| +|.+..--.-.+.+|.|+.+.+.+|++.
T Consensus 352 GNIKtL~La~N-~iE--~LSGL-~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KIE--TLSGL-RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cCEeeeehhhh-hHh--hhhhh-Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 89999999884 343 22222 24678999999998 7765443333355699999999999854
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.67 E-value=7e-07 Score=72.14 Aligned_cols=153 Identities=17% Similarity=0.113 Sum_probs=85.2
Q ss_pred cCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCC
Q 006499 427 RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIE 506 (643)
Q Consensus 427 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 506 (643)
++.+++.|.++.+ .++.... . ...+.+|+.|++++ +++++ +..-..++|+|+.|++.- +.+. .....++++|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp-n-ia~l~nlevln~~n-nqie~--lp~~issl~klr~lnvgm-nrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP-N-IAELKNLEVLNLSN-NQIEE--LPTSISSLPKLRILNVGM-NRLN-ILPRGFGSFP 102 (264)
T ss_pred chhhhhhhhcccC-ceeecCC-c-HHHhhhhhhhhccc-chhhh--cChhhhhchhhhheecch-hhhh-cCccccCCCc
Confidence 4455556666654 2221110 1 11356788888876 34543 222334578888887764 3332 2234567788
Q ss_pred CCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhccccc
Q 006499 507 DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQ 586 (643)
Q Consensus 507 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~ 586 (643)
.|+.|++..+ ++....+..-+-.+..|+.|+++++ .+.. +..-.+.+.+||.|.+..|.+-... ..++.+..|+
T Consensus 103 ~levldltyn-nl~e~~lpgnff~m~tlralyl~dn-dfe~--lp~dvg~lt~lqil~lrdndll~lp--keig~lt~lr 176 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN-DFEI--LPPDVGKLTNLQILSLRDNDLLSLP--KEIGDLTRLR 176 (264)
T ss_pred hhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC-Cccc--CChhhhhhcceeEEeeccCchhhCc--HHHHHHHHHH
Confidence 8888888874 4444333322224567788888776 3221 1111233578888888888732211 2356777888
Q ss_pred ccccccC
Q 006499 587 DAKLVHL 593 (643)
Q Consensus 587 ~L~l~~c 593 (643)
.|+|.+.
T Consensus 177 elhiqgn 183 (264)
T KOG0617|consen 177 ELHIQGN 183 (264)
T ss_pred HHhcccc
Confidence 8888765
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.57 E-value=4.6e-06 Score=57.42 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=17.9
Q ss_pred cccCCeEEeccCCCCHHHHHHHHhhcccccccccccC
Q 006499 557 SQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHL 593 (643)
Q Consensus 557 ~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c 593 (643)
+++|++|++++|.++.... .++..+++|+.|+++++
T Consensus 24 l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp GTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred CCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 3555555555555444333 34455555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=2.1e-05 Score=78.80 Aligned_cols=104 Identities=24% Similarity=0.276 Sum_probs=67.5
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHH-HHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcc
Q 006499 480 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA-GLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 558 (643)
Q Consensus 480 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 558 (643)
++.|+.|++++ |++++.. .+..|+.|++|+|+.+ .+... .+... +|. |+.|.+.+| .++. +..+ ..+.
T Consensus 186 l~ale~LnLsh-Nk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~--gc~-L~~L~lrnN-~l~t--L~gi-e~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMV--GCK-LQLLNLRNN-ALTT--LRGI-ENLK 254 (1096)
T ss_pred HHHhhhhccch-hhhhhhH--HHHhcccccccccccc-hhccccccchh--hhh-heeeeeccc-HHHh--hhhH-Hhhh
Confidence 47888888887 4665543 6777888888888874 33321 11111 344 888888887 4432 1222 2347
Q ss_pred cCCeEEeccCCCCHHHHHHHHhhcccccccccccCC
Q 006499 559 NLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 594 (643)
Q Consensus 559 ~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~ 594 (643)
+|+.||+++|-|++.+-...+..+.+|+.|.+.+.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888889988876655444667778888888887754
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=1.3e-05 Score=80.09 Aligned_cols=108 Identities=21% Similarity=0.138 Sum_probs=68.0
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCC
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 532 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 532 (643)
-+|.|+.|+++++ .+++.. ....|++|++|||++ |.+....--....|. |..|.++++ .++ .+..+ +++.
T Consensus 185 ll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN-~l~--tL~gi-e~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNN-ALT--TLRGI-ENLK 254 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH---HHHhccccccccccc-chhccccccchhhhh-heeeeeccc-HHH--hhhhH-Hhhh
Confidence 3577888888884 555433 334578899999887 455443322223454 888888884 332 33333 3578
Q ss_pred cCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCC
Q 006499 533 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 571 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 571 (643)
+|+.||+++| -+.+-.--.....+..|+.|+|.||++-
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8999999887 5544332222334578889999999853
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.19 E-value=4.4e-05 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=13.1
Q ss_pred CCCEEecCCCCCCChHHHHHhhcCCCCCeEeecC
Q 006499 482 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRG 515 (643)
Q Consensus 482 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~ 515 (643)
+|++|++++| .++......+..+++|+.|++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC
Confidence 3444444442 33333323333444444444443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.09 E-value=0.0014 Score=63.23 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCC
Q 006499 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (643)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~ 440 (643)
+.+++.|++++|. +... ..--++|++|.+++|..++... ..+ .++|+.|.+.+|.
T Consensus 51 ~~~l~~L~Is~c~-L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDCD-IESL-----PVLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCCC-Cccc-----CCCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcc
Confidence 4666777776652 3221 1112356666666665542211 111 2355555555553
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.05 E-value=0.0002 Score=71.69 Aligned_cols=42 Identities=31% Similarity=0.435 Sum_probs=19.4
Q ss_pred cCcEEecCCCCCCChHHHHHHH---hhcccCCeEEeccCCCCHHHH
Q 006499 533 RLADLDLKHCAKIDDSGFWALA---YYSQNLRQINLSYCALSDMAL 575 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~ 575 (643)
.++.++++.| .+++.+...+. ..+++++.+.++.|++.+.+.
T Consensus 263 ~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 263 TLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 3355555555 44444443333 223345555555555544443
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.00 E-value=8.6e-06 Score=65.99 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=98.6
Q ss_pred CCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 006499 403 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 482 (643)
Q Consensus 403 ~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 482 (643)
...++.|.+++ ++++.. ...++.+.+|+.|++.++ ++.+.. .-.+.+|+|+.|++... .+.. ...-+.++|.
T Consensus 32 ~s~ITrLtLSH-NKl~~v-ppnia~l~nlevln~~nn-qie~lp--~~issl~klr~lnvgmn-rl~~--lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVV-PPNIAELKNLEVLNLSNN-QIEELP--TSISSLPKLRILNVGMN-RLNI--LPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhccc-Cceeec-CCcHHHhhhhhhhhcccc-hhhhcC--hhhhhchhhhheecchh-hhhc--CccccCCCch
Confidence 45677888888 676543 345677889999998885 554322 22346788888888753 2211 1122345799
Q ss_pred CCEEecCCCCCCChHH-HHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCC
Q 006499 483 LKKLNLSYCVNVTDRG-MEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 561 (643)
Q Consensus 483 L~~L~l~~c~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 561 (643)
|+.|++.+ +++.+.. ...+..+..|+.|.++++ .+. -+..-.+.+.+|+.|.+.++.-++- .+.+ +.+.+|+
T Consensus 104 levldlty-nnl~e~~lpgnff~m~tlralyl~dn-dfe--~lp~dvg~lt~lqil~lrdndll~l--pkei-g~lt~lr 176 (264)
T KOG0617|consen 104 LEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-DFE--ILPPDVGKLTNLQILSLRDNDLLSL--PKEI-GDLTRLR 176 (264)
T ss_pred hhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-Ccc--cCChhhhhhcceeEEeeccCchhhC--cHHH-HHHHHHH
Confidence 99999998 4555443 233445677888888874 332 1222234678899999988833321 1222 3347899
Q ss_pred eEEeccCCCCHHHH
Q 006499 562 QINLSYCALSDMAL 575 (643)
Q Consensus 562 ~L~l~~~~l~~~~~ 575 (643)
+|++.+|+++-...
T Consensus 177 elhiqgnrl~vlpp 190 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPP 190 (264)
T ss_pred HHhcccceeeecCh
Confidence 99999998765443
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00048 Score=60.72 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhccc
Q 006499 480 CKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQN 559 (643)
Q Consensus 480 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 559 (643)
+..|+.+.+.++. + ..+..+..+|+|++|.++.+..-...++..++..+|+|++|++++| +|.+..-..-...+++
T Consensus 42 ~~~le~ls~~n~g-l--tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVG-L--TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccc-e--eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 3455555554432 1 1123445567777777776533334455556666777777777777 6654222222233467
Q ss_pred CCeEEeccCCCC---HHHHHHHHhhcccccccccccCCC
Q 006499 560 LRQINLSYCALS---DMALCMVMGNMTRLQDAKLVHLTN 595 (643)
Q Consensus 560 L~~L~l~~~~l~---~~~~~~~l~~~~~L~~L~l~~c~~ 595 (643)
|..|++..|..+ +.-- ..+.-+++|+.|+--++.+
T Consensus 118 L~~Ldl~n~~~~~l~dyre-~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYRE-KVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCCccccccHHH-HHHHHhhhhccccccccCC
Confidence 777777777532 3222 4455667777666555543
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00059 Score=60.46 Aligned_cols=114 Identities=25% Similarity=0.250 Sum_probs=53.2
Q ss_pred CCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccC
Q 006499 481 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 560 (643)
Q Consensus 481 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 560 (643)
.+.++|+..+| .++|.. ...++|.|+.|.|+- ++++. +.. +..|.+|+.|++..| .|.+..-......+|+|
T Consensus 19 ~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSv-NkIss--L~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSV-NKISS--LAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHHH--HHHhcccceeEEeec-ccccc--chh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 34555555554 444432 233455566655554 23321 111 124566666666555 45443333333344666
Q ss_pred CeEEeccCCCC-HHHH---HHHHhhcccccccccccCCCCCHHHHHHHH
Q 006499 561 RQINLSYCALS-DMAL---CMVMGNMTRLQDAKLVHLTNCTREGFELAL 605 (643)
Q Consensus 561 ~~L~l~~~~l~-~~~~---~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~ 605 (643)
+.|+|..|+-. ..+. ...+.-+|+|++|+ ...++.+.+++.+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~AL 136 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEAL 136 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHH
Confidence 66666666521 1111 13455556666654 2234445555544
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00058 Score=60.47 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=76.3
Q ss_pred CCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhccc
Q 006499 505 IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTR 584 (643)
Q Consensus 505 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~ 584 (643)
+.+.++|+..|| .++|.++ ...++.|+.|.++-| +|+.. ..+ ..|.+|++|+|..|.|.+..-..-+.++|+
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvN-kIssL--~pl-~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVN-KISSL--APL-QRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeecc-ccccc--hhH-HHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 568899999997 5777654 447899999999988 77643 223 457999999999999988776577899999
Q ss_pred ccccccccCC--C-CCHHHHHHHHHhcCCCCceeE
Q 006499 585 LQDAKLVHLT--N-CTREGFELALRSCCMRIKKVK 616 (643)
Q Consensus 585 L~~L~l~~c~--~-~~~~~~~~~~~~~c~~l~~l~ 616 (643)
|+.|.|...+ + -....=..+ +.-.|+|++++
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~V-LR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKV-LRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHH-HHHcccchhcc
Confidence 9999997633 2 223322333 33388898887
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.0006 Score=60.13 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=73.3
Q ss_pred cCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcc
Q 006499 504 FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMT 583 (643)
Q Consensus 504 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~ 583 (643)
.+..|+.|.+.++...+.. .+ ..+|+|++|+++.|..-...++..++..+|+|++|++++|+|.+..-...+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~---~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT---NF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeecc---cC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3556666666665333222 22 3578999999998833334556777777899999999999987643335677778
Q ss_pred cccccccccCCCCCHHHHHHHHHhcCCCCceeEec
Q 006499 584 RLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 618 (643)
Q Consensus 584 ~L~~L~l~~c~~~~~~~~~~~~~~~c~~l~~l~l~ 618 (643)
+|.+|.+.+|.......-...++.-.|+|+.++-.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 88889999886543322233333335678887754
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.63 E-value=0.0027 Score=34.37 Aligned_cols=24 Identities=50% Similarity=0.905 Sum_probs=13.2
Q ss_pred CCcCcEEecCCCCCCChHHHHHHH
Q 006499 531 CKRLADLDLKHCAKIDDSGFWALA 554 (643)
Q Consensus 531 ~~~L~~L~l~~~~~i~~~~~~~~~ 554 (643)
|++|++|+|++|++++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 355555555555555555555443
No 61
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.60 E-value=0.0012 Score=66.35 Aligned_cols=206 Identities=25% Similarity=0.317 Sum_probs=133.7
Q ss_pred ccEEEcCCCCCCchhhhhhh----ccCCCCcEeccCCCCCCChHHHHHHHhcCC----CCcEEecCCCCCCChHHHHHHH
Q 006499 406 LEEIDLTDCNGVNDKGLEYL----SRCSELLFLKLGLCENISDKGLFYIASNCL----RIQGLDLYKCSGIGDDGLAALS 477 (643)
Q Consensus 406 L~~L~l~~c~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~l~~~~~~~~~ 477 (643)
+..+.+.+ +.+.+.+...+ ...++|..|+++++ .+.+.+...+....+ .++.|++..| .++..+...+.
T Consensus 89 l~~L~L~~-~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLAN-NRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhh-CccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 77788888 46666665544 45889999999996 677888777765443 4677788877 45655544443
Q ss_pred h---cCCCCCEEecCCCCCCChHHHHH----hh----cCCCCCeEeecCCCCcCHHHHH---HHHhcCCc-CcEEecCCC
Q 006499 478 N---GCKKLKKLNLSYCVNVTDRGMEH----IR----FIEDLSDLELRGLTKITSAGLT---ALAAGCKR-LADLDLKHC 542 (643)
Q Consensus 478 ~---~~~~L~~L~l~~c~~l~~~~~~~----l~----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~-L~~L~l~~~ 542 (643)
. ....++.+++..|... ..+... +. ...+++.|++.+|. ++..... ......++ +..|++..|
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 3 3578888888875433 333222 22 35689999999974 4443333 33344455 777999988
Q ss_pred CCCChHHHHHHHhhcc----cCCeEEeccCCCCHHHHH---HHHhhcccccccccccCCCCCHHHHHHHH--HhcCCCCc
Q 006499 543 AKIDDSGFWALAYYSQ----NLRQINLSYCALSDMALC---MVMGNMTRLQDAKLVHLTNCTREGFELAL--RSCCMRIK 613 (643)
Q Consensus 543 ~~i~~~~~~~~~~~~~----~L~~L~l~~~~l~~~~~~---~~l~~~~~L~~L~l~~c~~~~~~~~~~~~--~~~c~~l~ 613 (643)
.+.+.+++.+...++ .++.++++.|+|++.+.. ..+..+++++.+.++.. .++..+....+ ......+.
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~ 321 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLL 321 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccch
Confidence 999888888775544 458999999998877663 44556778888888766 34443333322 22244555
Q ss_pred eeEec
Q 006499 614 KVKLL 618 (643)
Q Consensus 614 ~l~l~ 618 (643)
++.+.
T Consensus 322 ~~~l~ 326 (478)
T KOG4308|consen 322 HLVLG 326 (478)
T ss_pred hhhcc
Confidence 55544
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.55 E-value=0.0025 Score=39.88 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=16.9
Q ss_pred cCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCC
Q 006499 533 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALS 571 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 571 (643)
+|++|++++| ++++.. .....+++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLP--PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccC--chHhCCCCCCEEEecCCCCC
Confidence 4555555555 554422 21233455556666655554
No 63
>PLN03150 hypothetical protein; Provisional
Probab=96.40 E-value=0.0042 Score=65.63 Aligned_cols=87 Identities=17% Similarity=0.057 Sum_probs=39.6
Q ss_pred cCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcc
Q 006499 479 GCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQ 558 (643)
Q Consensus 479 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 558 (643)
.+++|+.|+++++ .++......+..+++|+.|+|++| .+....... +..+++|+.|++++| .++......+.....
T Consensus 440 ~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 440 KLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGN-SLSGRVPAALGGRLL 515 (623)
T ss_pred CCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCC-cccccCChHHhhccc
Confidence 3556666666653 343332333455566666666553 232211112 224556666666555 343222222322223
Q ss_pred cCCeEEeccCC
Q 006499 559 NLRQINLSYCA 569 (643)
Q Consensus 559 ~L~~L~l~~~~ 569 (643)
++..+++.+|.
T Consensus 516 ~~~~l~~~~N~ 526 (623)
T PLN03150 516 HRASFNFTDNA 526 (623)
T ss_pred cCceEEecCCc
Confidence 44555555554
No 64
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.38 E-value=0.0024 Score=60.87 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=35.6
Q ss_pred ccccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhc
Q 006499 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (643)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~ 44 (643)
.|++||+|++..|..+|+..-|+.+++.||+.||.++..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 489999999999999998788999999999999987643
No 65
>PLN03150 hypothetical protein; Provisional
Probab=96.34 E-value=0.0077 Score=63.69 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCe
Q 006499 483 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQ 562 (643)
Q Consensus 483 L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 562 (643)
++.|+++++ .++......+..+++|+.|+|++| .+... +...+..+++|+.|++++| .++......+. .+++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCE
Confidence 566666663 444333345666777777777764 33221 1112345677777777776 55433333333 3467777
Q ss_pred EEeccCCCCHHHHHHHHhh-ccccccccccc
Q 006499 563 INLSYCALSDMALCMVMGN-MTRLQDAKLVH 592 (643)
Q Consensus 563 L~l~~~~l~~~~~~~~l~~-~~~L~~L~l~~ 592 (643)
|++++|.++.... ..+.. ...+..+.+.+
T Consensus 495 L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 495 LNLNGNSLSGRVP-AALGGRLLHRASFNFTD 524 (623)
T ss_pred EECcCCcccccCC-hHHhhccccCceEEecC
Confidence 7777776554333 22322 23344444443
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.20 E-value=0.0069 Score=32.79 Aligned_cols=20 Identities=45% Similarity=0.893 Sum_probs=8.1
Q ss_pred CCCCEEecCCCCCCChHHHH
Q 006499 481 KKLKKLNLSYCVNVTDRGME 500 (643)
Q Consensus 481 ~~L~~L~l~~c~~l~~~~~~ 500 (643)
++|+.|++++|..++|.++.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHH
Confidence 33444444444444444333
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.18 E-value=0.0037 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=28.7
Q ss_pred ccCCeEEeccCCCCHHHHHHHHhhcccccccccccCC
Q 006499 558 QNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLT 594 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~ 594 (643)
++|++|++++|+|++... .++++++|+.|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCc--hHhCCCCCCEEEecCCC
Confidence 579999999999997655 48999999999999983
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.85 E-value=0.0038 Score=52.83 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=15.6
Q ss_pred CCCCCEEecCCCCCCC-hHHHHHhhcCCCCCeEeecCC
Q 006499 480 CKKLKKLNLSYCVNVT-DRGMEHIRFIEDLSDLELRGL 516 (643)
Q Consensus 480 ~~~L~~L~l~~c~~l~-~~~~~~l~~~~~L~~L~l~~~ 516 (643)
+|+|+.|.+.++ ++. -.++..+..||.|++|.+-++
T Consensus 87 ~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 87 LPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCc-chhhhhhcchhccCCccceeeecCC
Confidence 344555555542 222 122334444555555555443
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.69 E-value=0.0072 Score=60.60 Aligned_cols=151 Identities=27% Similarity=0.287 Sum_probs=83.3
Q ss_pred CccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCC
Q 006499 405 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 484 (643)
Q Consensus 405 ~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 484 (643)
+|+.|++++ +.+.... ..+..+++|+.|+++++ .+++..... ...++|+.|++++. .+.+.... ......|+
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~--~~~~~L~~L~ls~N-~i~~l~~~--~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPKLL--SNLSNLNNLDLSGN-KISDLPPE--IELLSALE 212 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhhhh--hhhhhhhheeccCC-ccccCchh--hhhhhhhh
Confidence 667777766 5554432 34556677777777765 343322211 13577777777774 44332111 11234577
Q ss_pred EEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEE
Q 006499 485 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQIN 564 (643)
Q Consensus 485 ~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 564 (643)
+|.+++...+. .+..+..+.++..+.+.++ .+... ......+++++.|++++| .+++... .....+++.|+
T Consensus 213 ~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n-~~~~~--~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~ 283 (394)
T COG4886 213 ELDLSNNSIIE--LLSSLSNLKNLSGLELSNN-KLEDL--PESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELD 283 (394)
T ss_pred hhhhcCCccee--cchhhhhcccccccccCCc-eeeec--cchhccccccceeccccc-ccccccc---ccccCccCEEe
Confidence 77777632222 1233555666666665553 33221 223345677888888887 6665443 23347888888
Q ss_pred eccCCCCH
Q 006499 565 LSYCALSD 572 (643)
Q Consensus 565 l~~~~l~~ 572 (643)
++++.++.
T Consensus 284 ~s~n~~~~ 291 (394)
T COG4886 284 LSGNSLSN 291 (394)
T ss_pred ccCccccc
Confidence 88887553
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.55 E-value=0.0036 Score=49.30 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccC
Q 006499 481 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 560 (643)
Q Consensus 481 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 560 (643)
..|+.+++++ +.+.+..-.....+|..+.|++++ +.+.+...+ +..++.|+.|+++.|+-... .+.++. +.++
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE--~Aam~aLr~lNl~~N~l~~~--p~vi~~-L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE--LAAMPALRSLNLRFNPLNAE--PRVIAP-LIKL 125 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH--HhhhHHhhhcccccCccccc--hHHHHH-HHhH
Confidence 4555555555 233332222222445555555555 344433222 22455566666655522211 122222 3455
Q ss_pred CeEEeccCCCCHHHH
Q 006499 561 RQINLSYCALSDMAL 575 (643)
Q Consensus 561 ~~L~l~~~~l~~~~~ 575 (643)
-.|+..+|.+.....
T Consensus 126 ~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 126 DMLDSPENARAEIDV 140 (177)
T ss_pred HHhcCCCCccccCcH
Confidence 555555554444333
No 71
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.14 E-value=0.015 Score=52.73 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=33.3
Q ss_pred ccccCcHHHHHHHHHHh-----CCccchhHHHHHhhhHhhhhhcc
Q 006499 6 ALDVLTEDLLVRVREKI-----GDELDSKTWRLVCKEFSRVDSVT 45 (643)
Q Consensus 6 ~~~~LP~eil~~If~~L-----~~~~~~~~~~~vc~~w~~~~~~~ 45 (643)
.|..|||||+..||... + .+++.++++|||.|+..++..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHcCh
Confidence 46899999999999865 4 689999999999999877553
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.13 E-value=0.021 Score=55.34 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=84.9
Q ss_pred hcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcC
Q 006499 452 SNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGC 531 (643)
Q Consensus 452 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 531 (643)
..+++++.|++++| .++.- . .-.++|++|.+.+|+.++... ..+ .++|+.|++++|..+. .+ .
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~-----sL---P 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEIS-----GL---P 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccc-----cc---c
Confidence 35799999999998 44432 1 112479999999998864321 122 2589999999987653 12 3
Q ss_pred CcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCC-CCHHHHHHHHhhc-ccccccccccCCCCCH-HHHHHHHHhc
Q 006499 532 KRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCA-LSDMALCMVMGNM-TRLQDAKLVHLTNCTR-EGFELALRSC 608 (643)
Q Consensus 532 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~l~~~-~~L~~L~l~~c~~~~~-~~~~~~~~~~ 608 (643)
++|+.|++..+ .... +....++|++|.+.++. ...... . ..+ ++|+.|.+.+|..+.. .++
T Consensus 112 ~sLe~L~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~~~~l-p--~~LPsSLk~L~Is~c~~i~LP~~L------- 175 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS-----IKNVPNGLTSLSINSYNPENQARI-D--NLISPSLKTLSLTGCSNIILPEKL------- 175 (426)
T ss_pred cccceEEeCCC-CCcc-----cccCcchHhheecccccccccccc-c--cccCCcccEEEecCCCcccCcccc-------
Confidence 67888998754 3322 23344689999886543 222111 0 123 6899999999976531 111
Q ss_pred CCCCceeEecc
Q 006499 609 CMRIKKVKLLA 619 (643)
Q Consensus 609 c~~l~~l~l~~ 619 (643)
..+|+.+.++.
T Consensus 176 P~SLk~L~ls~ 186 (426)
T PRK15386 176 PESLQSITLHI 186 (426)
T ss_pred cccCcEEEecc
Confidence 13788888753
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.12 E-value=0.0093 Score=54.33 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCccccCc----HHHHHHHHHHhCCccchhHHHHHhhhHhhhhhccc
Q 006499 4 SSALDVLT----EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR 46 (643)
Q Consensus 4 ~~~~~~LP----~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~ 46 (643)
.|.+..|| +++-+.||+||+ ..+++++-+||++|+++....-
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccch
Confidence 47789999 999999999999 9999999999999999886543
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.11 E-value=0.02 Score=57.43 Aligned_cols=172 Identities=24% Similarity=0.268 Sum_probs=110.4
Q ss_pred CCCccEEEcCCCCCCchhhhhhhccC-CCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 006499 403 CLRLEEIDLTDCNGVNDKGLEYLSRC-SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCK 481 (643)
Q Consensus 403 ~~~L~~L~l~~c~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 481 (643)
.+.++.|++.+ +.+++... ..... ++|+.|+++++ .+.... .-...+++|+.|+++++ .+.+.. ......+
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~--~~~~~~~ 186 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPP-LIGLLKSNLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFN-DLSDLP--KLLSNLS 186 (394)
T ss_pred ccceeEEecCC-cccccCcc-ccccchhhccccccccc-chhhhh--hhhhccccccccccCCc-hhhhhh--hhhhhhh
Confidence 36788888887 66655332 12234 38999999885 444321 12346899999999986 454432 2221468
Q ss_pred CCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCC
Q 006499 482 KLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 561 (643)
Q Consensus 482 ~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 561 (643)
.|+.|++++ +.+++.... ......|++|.++++..+... .....+.++..+.+.++ .+.+. ......+++++
T Consensus 187 ~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n-~~~~~--~~~~~~l~~l~ 258 (394)
T COG4886 187 NLNNLDLSG-NKISDLPPE-IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNN-KLEDL--PESIGNLSNLE 258 (394)
T ss_pred hhhheeccC-CccccCchh-hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCc-eeeec--cchhccccccc
Confidence 999999998 466544322 133455999999886433322 22235677888887776 44431 12233457899
Q ss_pred eEEeccCCCCHHHHHHHHhhcccccccccccC
Q 006499 562 QINLSYCALSDMALCMVMGNMTRLQDAKLVHL 593 (643)
Q Consensus 562 ~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c 593 (643)
.|++++|.+++... ++....++.|.+++-
T Consensus 259 ~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 259 TLDLSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred eecccccccccccc---ccccCccCEEeccCc
Confidence 99999999887655 677788888888764
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.05 E-value=0.0081 Score=50.90 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccC
Q 006499 481 KKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 560 (643)
Q Consensus 481 ~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 560 (643)
.....+++.+. .+. ....+..+++|..|.+.+ +.++.... .+...+|+|+.|.+.+| +|...+--.-...||+|
T Consensus 42 d~~d~iDLtdN-dl~--~l~~lp~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLR--KLDNLPHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceeccccc-chh--hcccCCCccccceEEecC-Ccceeecc-chhhhccccceEEecCc-chhhhhhcchhccCCcc
Confidence 46667777763 332 123466788999999987 45654322 12234688999999998 66554433333457999
Q ss_pred CeEEeccCCCCHHHH--HHHHhhcccccccccccC
Q 006499 561 RQINLSYCALSDMAL--CMVMGNMTRLQDAKLVHL 593 (643)
Q Consensus 561 ~~L~l~~~~l~~~~~--~~~l~~~~~L~~L~l~~c 593 (643)
+.|.+-+|++++..- ...+..+|+|+.|++..-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999999998876433 023445677777776543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.73 E-value=0.023 Score=29.99 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=8.8
Q ss_pred ccCCeEEeccCCCCHHHH
Q 006499 558 QNLRQINLSYCALSDMAL 575 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~~~ 575 (643)
++|++|+|++|+|++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455555555555555555
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.02 E-value=0.041 Score=29.01 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=13.1
Q ss_pred CCcCcEEecCCCCCCChHHHHHHH
Q 006499 531 CKRLADLDLKHCAKIDDSGFWALA 554 (643)
Q Consensus 531 ~~~L~~L~l~~~~~i~~~~~~~~~ 554 (643)
+++|+.|+|++| .+++.++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 356777777777 57766666554
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.84 E-value=0.029 Score=44.43 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCCEEecCCCCCC-ChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccC
Q 006499 482 KLKKLNLSYCVNV-TDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNL 560 (643)
Q Consensus 482 ~L~~L~l~~c~~l-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 560 (643)
.+-.++++.|.-. -...+..+.....|+..+|++ +.+.+.. ..+...++.++.|+++++ .+++...+ ++. ++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~n-eisdvPeE-~Aa-m~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANN-EISDVPEE-LAA-MPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchh-hhhhchHH-Hhh-hHHh
Confidence 4556777777433 233345566777888888888 3454432 233346778899999988 88876665 554 4899
Q ss_pred CeEEeccCCCCHHHH
Q 006499 561 RQINLSYCALSDMAL 575 (643)
Q Consensus 561 ~~L~l~~~~l~~~~~ 575 (643)
+.|+++.|++..+.-
T Consensus 103 r~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPR 117 (177)
T ss_pred hhcccccCccccchH
Confidence 999999998765443
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.59 E-value=0.31 Score=26.81 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=9.2
Q ss_pred cCcEEecCCCCCCChHHHHHHH
Q 006499 533 RLADLDLKHCAKIDDSGFWALA 554 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~ 554 (643)
+|++|+|++| .+++.+...++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 3444444444 44444444433
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.41 E-value=0.039 Score=55.53 Aligned_cols=109 Identities=25% Similarity=0.291 Sum_probs=75.1
Q ss_pred hcCCCCCEEecCCCCCCChHHHHH-hhcCCCCCeEeecCCCCcCH-HHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHh
Q 006499 478 NGCKKLKKLNLSYCVNVTDRGMEH-IRFIEDLSDLELRGLTKITS-AGLTALAAGCKRLADLDLKHCAKIDDSGFWALAY 555 (643)
Q Consensus 478 ~~~~~L~~L~l~~c~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~ 555 (643)
..+.+|+.|++.+ +.+.. +.. +..+++|+.|+++++ .++. .++. .++.|+.|++++| .|+... .+ .
T Consensus 92 ~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N-~i~~~~--~~-~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGN-LISDIS--GL-E 159 (414)
T ss_pred ccccceeeeeccc-cchhh--cccchhhhhcchheecccc-ccccccchh----hccchhhheeccC-cchhcc--CC-c
Confidence 3468899999887 45543 234 667899999999994 4543 3333 3456999999998 665422 11 2
Q ss_pred hcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCCCCCHH
Q 006499 556 YSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTRE 599 (643)
Q Consensus 556 ~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~~~~~ 599 (643)
.+++|+.+++++|.+.+..... +..+.+++.+.+.+......+
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 2689999999999987654411 578888999988887544433
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.38 E-value=0.071 Score=53.65 Aligned_cols=110 Identities=24% Similarity=0.279 Sum_probs=75.1
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHHHhcCC
Q 006499 453 NCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCK 532 (643)
Q Consensus 453 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 532 (643)
.+.+|+.|++.+. .+.. +......+++|+.|++++ +.|++. ..+..++.|+.|++.+| .++... . +..++
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i--~~l~~l~~L~~L~l~~N-~i~~~~--~-~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKL--EGLSTLTLLKELNLSGN-LISDIS--G-LESLK 162 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhhhcchheeccc-cccccc--cchhhccchhhheeccC-cchhcc--C-Cccch
Confidence 5688999999874 4432 222134589999999998 566543 45667778999999995 443321 1 12378
Q ss_pred cCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHH
Q 006499 533 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMA 574 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 574 (643)
+|+.+++++| .+....... ...+.+++.+++.+|.+....
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 9999999998 665533311 244689999999999865433
No 82
>PF13013 F-box-like_2: F-box-like domain
Probab=91.06 E-value=0.25 Score=37.91 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=26.7
Q ss_pred cccCcHHHHHHHHHHhCCccchhHHHHHhh
Q 006499 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCK 36 (643)
Q Consensus 7 ~~~LP~eil~~If~~L~~~~~~~~~~~vc~ 36 (643)
+.+||+|++..||+|.. ..+...+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 78899999999999999 888888888888
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.06 E-value=0.42 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.5
Q ss_pred ccCCeEEeccCCCCHHHHHHHHh
Q 006499 558 QNLRQINLSYCALSDMALCMVMG 580 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~~~~~~l~ 580 (643)
++|++|+|++|.+++.+. ..+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~-~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA-RALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHH-HHHH
Confidence 689999999999999988 5543
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.42 E-value=0.24 Score=23.47 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=5.8
Q ss_pred cCCeEEeccCCCC
Q 006499 559 NLRQINLSYCALS 571 (643)
Q Consensus 559 ~L~~L~l~~~~l~ 571 (643)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.28 E-value=0.029 Score=45.75 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=11.1
Q ss_pred cccCCeEEeccCCCCHHHHHHHHhhcccccccccc
Q 006499 557 SQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLV 591 (643)
Q Consensus 557 ~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~ 591 (643)
+++|+.+++..+ +...+. ..+.++ .|+.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--BEEHT-TTTTT--T--EEE-T
T ss_pred cccccccccCcc-ccEEch-hhhcCC-CceEEEEC
Confidence 345555555433 222222 334444 55555443
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.97 E-value=0.31 Score=50.12 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCccccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhhcccccc
Q 006499 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTL 49 (643)
Q Consensus 3 ~~~~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~ 49 (643)
..+.+..||.|+..+||.||+ .+++.+++.||+.|+.+......++
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 347789999999999999999 8999999999999999876654443
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.39 E-value=0.38 Score=39.00 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=12.7
Q ss_pred cCCCccEEEcCCCCCCchhhhhhhccCCCCcEeccCC
Q 006499 402 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438 (643)
Q Consensus 402 ~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~ 438 (643)
.+.+|+.+.+.. .+...+...+..+++|+.+.+..
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 344555555543 33333334444555555555543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.67 E-value=3.6 Score=41.37 Aligned_cols=86 Identities=27% Similarity=0.242 Sum_probs=38.2
Q ss_pred hcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCC-CCCh-HHHHHhhcCCCCCeEeecCCCCcCH-----HHH
Q 006499 452 SNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCV-NVTD-RGMEHIRFIEDLSDLELRGLTKITS-----AGL 524 (643)
Q Consensus 452 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~-~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~ 524 (643)
.+.|.+..+.++++.-..-+++..++...|+|+.|+|++.. .+.. ..+..+ +...|++|.+.|++-.+. +-+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHH
Confidence 34455555555553222334444455555666666666520 1111 111111 234566666666543332 223
Q ss_pred HHHHhcCCcCcEEe
Q 006499 525 TALAAGCKRLADLD 538 (643)
Q Consensus 525 ~~~~~~~~~L~~L~ 538 (643)
.++.+.+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 33444556665553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.47 E-value=3.4 Score=41.52 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=42.0
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCC--CCchhh-hhhhccCCCCcEeccCCCCCCC-----hHHH
Q 006499 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN--GVNDKG-LEYLSRCSELLFLKLGLCENIS-----DKGL 447 (643)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~--~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-----~~~~ 447 (643)
..|.+.++.++++.-..-+++..+.+..|+|+.|+|++ + .+.... +..+ ....|++|.+.+++-.+ ...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~-N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH-NHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeeccc-chhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHH
Confidence 34555555555544333444555555566666666666 4 222111 1111 23346666666654322 2334
Q ss_pred HHHHhcCCCCcEEe
Q 006499 448 FYIASNCLRIQGLD 461 (643)
Q Consensus 448 ~~l~~~~~~L~~L~ 461 (643)
..+.+.+|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 45556677777775
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.19 E-value=1.2 Score=22.69 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=10.1
Q ss_pred cCCeEEeccCCCCH
Q 006499 559 NLRQINLSYCALSD 572 (643)
Q Consensus 559 ~L~~L~l~~~~l~~ 572 (643)
+|++|++++|+++.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 47778888887663
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.15 E-value=2.3 Score=22.68 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=10.0
Q ss_pred ccCCeEEeccCCCCHH
Q 006499 558 QNLRQINLSYCALSDM 573 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~ 573 (643)
++|+.|++++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4666777777765543
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.15 E-value=2.3 Score=22.68 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=10.0
Q ss_pred ccCCeEEeccCCCCHH
Q 006499 558 QNLRQINLSYCALSDM 573 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~ 573 (643)
++|+.|++++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4666777777765543
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.04 E-value=7.7 Score=20.88 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.1
Q ss_pred ccCCeEEeccCCCC
Q 006499 558 QNLRQINLSYCALS 571 (643)
Q Consensus 558 ~~L~~L~l~~~~l~ 571 (643)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888888888775
No 94
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=54.66 E-value=5.1 Score=40.60 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=61.6
Q ss_pred ccEEEcCCCCCCchhhhhhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCE
Q 006499 406 LEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKK 485 (643)
Q Consensus 406 L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 485 (643)
|+.|.+++ ++++... ..++..+.|..|+.+.|. +.. +..-..++.+|+.|.+... ++.+. ..++. .-.|.+
T Consensus 145 Lkvli~sN-Nkl~~lp-~~ig~~~tl~~ld~s~ne-i~s--lpsql~~l~slr~l~vrRn-~l~~l-p~El~--~LpLi~ 215 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLP-EEIGLLPTLAHLDVSKNE-IQS--LPSQLGYLTSLRDLNVRRN-HLEDL-PEELC--SLPLIR 215 (722)
T ss_pred ceeEEEec-CccccCC-cccccchhHHHhhhhhhh-hhh--chHHhhhHHHHHHHHHhhh-hhhhC-CHHHh--CCceee
Confidence 56666666 4554322 223355566666666652 211 1111123455666666553 22211 11222 246777
Q ss_pred EecCCCCCCChHHHHHhhcCCCCCeEeecCCCCcCHHHHHHH-HhcCCcCcEEecCCC
Q 006499 486 LNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTAL-AAGCKRLADLDLKHC 542 (643)
Q Consensus 486 L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 542 (643)
||++ |++++...+ .+.++..|+.|-|.+++ ++....... .+...=.|+|++.-|
T Consensus 216 lDfS-cNkis~iPv-~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFS-CNKISYLPV-DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecc-cCceeecch-hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 8877 467665433 35677788888887754 333222111 112344566666655
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=54.40 E-value=2.1 Score=43.12 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=84.5
Q ss_pred hhhccCCCCcEeccCCCCCCChHHHHHHHhcCCCCcEEecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHh
Q 006499 423 EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHI 502 (643)
Q Consensus 423 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 502 (643)
..+.++..|..++++.+ +++.... .+. .+ -|+.|-++++ .++... ..+. ..+.|..|+.+.|. +.. ....+
T Consensus 115 ~~i~~L~~lt~l~ls~N-qlS~lp~-~lC-~l-pLkvli~sNN-kl~~lp-~~ig-~~~tl~~ld~s~ne-i~s-lpsql 185 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSN-QLSHLPD-GLC-DL-PLKVLIVSNN-KLTSLP-EEIG-LLPTLAHLDVSKNE-IQS-LPSQL 185 (722)
T ss_pred hhhhhhhHHHHhhhccc-hhhcCCh-hhh-cC-cceeEEEecC-ccccCC-cccc-cchhHHHhhhhhhh-hhh-chHHh
Confidence 44555666666666654 2221111 111 12 3777777763 443211 1111 45778888888753 321 12346
Q ss_pred hcCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEecCCCCCCChHHHHHHHhhcccCCeEEeccCCCCHHHHHHHH-hh
Q 006499 503 RFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVM-GN 581 (643)
Q Consensus 503 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l-~~ 581 (643)
..+.+|+.|.+..+ ++.+. ...+. +-.|.+||++.| +++...+ -+..++.|++|-|.+|++.....+... +.
T Consensus 186 ~~l~slr~l~vrRn-~l~~l-p~El~--~LpLi~lDfScN-kis~iPv--~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRN-HLEDL-PEELC--SLPLIRLDFSCN-KISYLPV--DFRKMRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred hhHHHHHHHHHhhh-hhhhC-CHHHh--CCceeeeecccC-ceeecch--hhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence 66778888888774 33221 12222 456888999877 7664322 223457899999999988765552112 22
Q ss_pred cccccccccccC
Q 006499 582 MTRLQDAKLVHL 593 (643)
Q Consensus 582 ~~~L~~L~l~~c 593 (643)
.-=.+.|++.-|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 233456666666
No 96
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=52.15 E-value=21 Score=32.34 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=33.4
Q ss_pred CccccCcHHHHHHHHHHhCCccchhHHHHHhhhHhhhhh
Q 006499 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDS 43 (643)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~ 43 (643)
..+.+||.|++..|+.+++..+|+..++.|-..-+.+..
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 458899999999999999989999999998876665554
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=46.49 E-value=18 Score=19.40 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.5
Q ss_pred CcEEeccC
Q 006499 380 LVCLKIES 387 (643)
Q Consensus 380 L~~L~l~~ 387 (643)
|++|.+..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444444
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=32.37 E-value=25 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=10.5
Q ss_pred ccCCeEEeccCCCC
Q 006499 558 QNLRQINLSYCALS 571 (643)
Q Consensus 558 ~~L~~L~l~~~~l~ 571 (643)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46778888888765
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=24.35 E-value=2.5e+02 Score=26.91 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=14.4
Q ss_pred HHHHhcCCcCcEEecCCCCCCChHHHHHHH
Q 006499 525 TALAAGCKRLADLDLKHCAKIDDSGFWALA 554 (643)
Q Consensus 525 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~ 554 (643)
..+..-+++|+.|++.++ .|+..++-++.
T Consensus 248 a~ml~~n~sl~slnvesn-FItg~gi~a~~ 276 (353)
T KOG3735|consen 248 AEMLKENKSLTSLNVESN-FITGLGIMALL 276 (353)
T ss_pred HHHHhhcchhhheecccc-ccccHHHHHHH
Confidence 333444555555555555 55555444443
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=21.47 E-value=1.3e+02 Score=28.63 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=41.3
Q ss_pred HHHHHHhhcccCCeEEeccCCCCHHHHHHHHhhcccccccccccCCC---CC-H-HHH-HHHHHhcCCCCceeEec
Q 006499 549 GFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN---CT-R-EGF-ELALRSCCMRIKKVKLL 618 (643)
Q Consensus 549 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~---~~-~-~~~-~~~~~~~c~~l~~l~l~ 618 (643)
.+..+...++.|++|++++|-|+..++...+..+..=++|.....++ +. . ..+ .+.++..+.++-++..|
T Consensus 246 a~a~ml~~n~sl~slnvesnFItg~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~ 321 (353)
T KOG3735|consen 246 AIAEMLKENKSLTSLNVESNFITGLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYH 321 (353)
T ss_pred HHHHHHhhcchhhheeccccccccHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccc
Confidence 34445566789999999999999999954455554444443322221 11 1 111 12225557788888774
Done!