Query 006499
Match_columns 643
No_of_seqs 375 out of 3728
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 18:33:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006499.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2126-2130//hhsearch_pdb/006499hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 1.0 1 1 344.1 39.6 503 4-589 3-537 (594)
2 3ogk_B Coronatine-insensitive 1.0 1 1 338.0 32.3 504 8-590 14-545 (592)
3 2p1m_B Transport inhibitor res 1.0 1 1 264.7 40.7 414 191-618 97-539 (594)
4 3ogk_B Coronatine-insensitive 1.0 1 1 262.6 31.5 417 189-617 102-545 (592)
5 3rgz_A Protein brassinosteroid 1.0 1 1 260.2 -8.0 418 172-618 199-712 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 254.4 -9.0 528 57-627 69-698 (768)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 246.6 -2.3 489 65-594 33-558 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 244.7 -1.0 492 91-618 28-555 (606)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 239.5 2.3 496 95-618 72-617 (680)
10 1ziw_A TOLL-like receptor 3; i 1.0 1 1 239.4 -0.2 504 59-593 67-619 (680)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=1.00 E-value=1 Score=344.09 Aligned_cols=503 Identities=23% Similarity=0.339 Sum_probs=304.3
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHCCCCCEECCCCCCCCCCH
Q ss_conf 9865467389999999872795202589887566764320011000001299--99999850999717334689897813
Q 006499 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVE--FLFILLDKYPYIKTLDLSVCPRVNDG 81 (643)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~ 81 (643)
.|.|++||+||+.+||+||+..+|+.++++|||+|+++....+..+.+..++ .+..++.+|+++++++++++..+.+.
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred CCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCHHHC
T ss_conf 52543499999999985569823589999999899875564410876113334687999862887529961488732102
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 58878654221014654367227887778467999975099985762789998890888985305697578458887656
Q 006499 82 TVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVT 161 (643)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 161 (643)
.+ . +..+ ......++..+...+++|++|+++++ .++
T Consensus 83 ~l--~----~~~~------------~~~~~~~l~~l~~~~~~L~~L~L~~~--------------------------~~~ 118 (594)
T 2p1m_B 83 NL--V----PDGW------------GGYVYPWIEAMSSSYTWLEEIRLKRM--------------------------VVT 118 (594)
T ss_dssp TC--S----CTTS------------CCBCHHHHHHHHHHCTTCCEEEEESC--------------------------BCC
T ss_pred CC--C----CCCC------------CCHHHHHHHHHHHHCCCCCEEEEECC--------------------------EEC
T ss_conf 54--3----3332------------11005899999976888775975585--------------------------775
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH----CCCCCCEEEECCCC-CC
Q ss_conf 47599999718986588347667853899999997198875898258745937899851----58888668724898-88
Q 006499 162 DVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA----TLAKLESLVMVGCP-CV 236 (643)
Q Consensus 162 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~-~~ 236 (643)
+..+..+...+++|++|++.+|..+++.++..+...+++|++|+++++.+++.....+. .+++|+.|++.+|. .+
T Consensus 119 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 198 (594)
T 2p1m_B 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 99999999849998687688969978789999997689988895758756775157999875029967488700667867
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHH----HHHHHCCCCCCCEEECCCCC
Q ss_conf 81149999753999749985064466946699998509983189549987745377----99973069986689837975
Q 006499 237 DDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTT----LLHHMRDLKNLEAITMDGAR 312 (643)
Q Consensus 237 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 312 (643)
+...+..+...+++|+.|++.+|... ..+......+++|+++.+..+....... ....+.
T Consensus 199 ~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~-------------- 262 (594)
T 2p1m_B 199 SFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS-------------- 262 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHCCCCCEEECCCCCCH--HHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHH--------------
T ss_conf 88999999974997848866787767--77999986398655714543447666366889999985--------------
Q ss_pred CCHHHHHHHHHCCCCCCEE-ECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 5977999997329887589-426889999789999984799984883689999996999999841999849954678888
Q 006499 313 ISDSCFQTISFNCKSLVEI-GLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMI 391 (643)
Q Consensus 313 ~~~~~~~~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 391 (643)
.+++|+.+ .+.. .....+..+...+++|++|++.+|. +++..+..+...+++|++|.+.+| +
T Consensus 263 -----------~~~~L~~Ls~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~ 325 (594)
T 2p1m_B 263 -----------GCKELRCLSGFWD---AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--I 325 (594)
T ss_dssp -----------TCTTCCEEECCBT---CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--G
T ss_pred -----------CCCCCCCCCCCCC---CCHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHCCCCCCEEECCCC--C
T ss_conf -----------4997630358765---6655678888764789989732887-887999999960987689958676--3
Q ss_pred CHHHHHHHHHCCCCCCEEEC--------CCCCCCCHHHHHHHCC-CCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEEC
Q ss_conf 98899998633999629976--------9998986213333006-98876762578777795989999825987768864
Q 006499 392 TEKGLYQLGSFCLRLEEIDL--------TDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYIASNCLRIQGLDL 462 (643)
Q Consensus 392 ~~~~~~~l~~~~~~L~~L~l--------~~c~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 462 (643)
.+.++..+...+++|++|++ .+|..+++.++..+.. +++|+.|.+. |..+++.++..+...+++|+.|++
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHH-CCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 7889999998687888899724765443347887888999998706317999976-577689999999860888652476
Q ss_pred C-----CCCCCC----HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHC-CCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 8-----999989----28799998349999899558987789688998455-9998868515977768789999984299
Q 006499 463 Y-----KCSGIG----DDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRF-IEDLSDLELRGLTKITSAGLTALAAGCK 532 (643)
Q Consensus 463 ~-----~~~~l~----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 532 (643)
. +|+.++ +.++..+..++++|+.|++++ .+++..+..+.. +++|+.|++++| .+++.++..+...++
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCD 481 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCT
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC--CCCHHHHHHHHHHCHHCCEEECCCC-CCCHHHHHHHHHCCC
T ss_conf 2346777464567723548999995589866795067--4168999999975311618654479-984899999985499
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH-HHCCCCCCCC
Q ss_conf 67587057889989588999995062677577226778979999998-5035545210
Q 006499 533 RLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVM-GNMTRLQDAK 589 (643)
Q Consensus 533 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l-~~~~~L~~L~ 589 (643)
+|+.|++++| .+++.++..+...+++|+.|++++|++++.+. ..+ ..+|.++...
T Consensus 482 ~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 482 SLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGAC-KLLGQKMPKLNVEV 537 (594)
T ss_dssp TCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH-HHHHHHCTTEEEEE
T ss_pred CCCEEECCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHCCCCEEEE
T ss_conf 8687888699-87399999999758887789614787979999-99997699977998
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=1.00 E-value=1 Score=338.03 Aligned_cols=504 Identities=19% Similarity=0.282 Sum_probs=302.6
Q ss_pred CCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHCCCCCEECCCCCCCCCCHHHH
Q ss_conf 467389999999872-79520258988756676432001100000129--999999850999717334689897813588
Q 006499 8 DVLTEDLLVRVREKI-GDELDSKTWRLVCKEFSRVDSVTRTTLRVLRV--EFLFILLDKYPYIKTLDLSVCPRVNDGTVS 84 (643)
Q Consensus 8 ~~LP~eil~~If~~L-~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 84 (643)
.+||+|++.+||+|| + .+|+.++++|||+|+.+....+..+...++ ..++.++.++++++++++++++.+.+...
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~- 91 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL- 91 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-
T ss_pred CCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCCCCHHHCCC-
T ss_conf 78999999999976599-8899999987389998553115678876225468699997689972898248753322055-
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHH-CCC-CCEEECCCCCCCCH
Q ss_conf 7865422101465436722788777846799997509998576278999889088898530-569-75784588876564
Q 006499 85 FLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASG-LKEVKLDKCLNVTD 162 (643)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~~~~ 162 (643)
+ .. ........++..+...+++|++|+++++ .+.+.....+.. +++ |++|++.+|..+++
T Consensus 92 -~-----~~-----------~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 92 -I-----PE-----------NWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp -S-----CT-----------TSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred -C-----CC-----------CCCCCCHHHHHHHHHHCCCCCEEEEECC-EECHHHHHHHHHHCCCCCCEEECCCCCCCCH
T ss_conf -5-----64-----------4334232899999964889886971131-7669999999974202676997867899687
Q ss_pred HHHHHHHHHCCCCCEEECCCCCCCCHH---HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHH
Q ss_conf 759999971898658834766785389---99999971988758982587459378998515888866872489888811
Q 006499 163 VGLAKIAVRCVNLERLSLKWCMEISDL---GIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDT 239 (643)
Q Consensus 163 ~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 239 (643)
.++..+...+++|++|++.+|. +.+. .+..+...+++|++|+++++.++ .+...
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~----------------------~~~~~ 210 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFA----------------------KISPK 210 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCS----------------------SCCHH
T ss_pred HHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHHHHCCCCCCEEEEECCCCC----------------------CCCHH
T ss_conf 8999999619997889775552-457530699987751887417886605777----------------------66889
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC-CHHHHHHHCCCCCCCEEECCCCCCCHHHH
Q ss_conf 49999753999749985064466946699998509983189549987745-37799973069986689837975597799
Q 006499 240 GLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSEL-STTLLHHMRDLKNLEAITMDGARISDSCF 318 (643)
Q Consensus 240 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 318 (643)
.+..+...+++|+.|++.++.. .++......+++|+++.+....... .......+..+++|+.+.+... ....+
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l 285 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEI---LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEM 285 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBG---GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTG
T ss_pred HHHHHHHHCCCCCEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CHHHH
T ss_conf 9999996199986886567667---878988743467775143413466554789987630210354682313--46678
Q ss_pred HHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCC----------C
Q ss_conf 999732988758942688999978999998479998488368999999699999984199984995467----------8
Q 006499 319 QTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIES----------C 388 (643)
Q Consensus 319 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~ 388 (643)
..+...+++|++|++.+|. +++..+..+...+++|+.|++. ..+.+..+..+...+++|++|++.+ |
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHHCCCCCEEECCCCC-CCHHHHHHHHHHCCCCCEEECC--CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 9988643878688247886-7777899999738487778615--766879999999868799989940676553333446
Q ss_pred CCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEECC---CC
Q ss_conf 888988999986339996299769998986213333006988767625787777959899998259877688648---99
Q 006499 389 NMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY---KC 465 (643)
Q Consensus 389 ~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~---~~ 465 (643)
..+++.++..+...++ +|+.|.+. |..+++..+..+...+++|+.|++. .|
T Consensus 363 ~~~~~~~~~~l~~~~~-------------------------~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQ-------------------------ELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp CCCCHHHHHHHHHHCT-------------------------TCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred CCCCHHHHHHHHHHCC-------------------------CCEEEEEE-CCCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 8537899999985083-------------------------57089865-687539999999962888767998623787
Q ss_pred CCCCH----HHHHHHHHCCCCCCEEECCCCC-CCCHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEC
Q ss_conf 99892----8799998349999899558987-78968899845-599988685159777687899999842996758705
Q 006499 466 SGIGD----DGLAALSNGCKKLKKLNLSYCV-NVTDRGMEHIR-FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDL 539 (643)
Q Consensus 466 ~~l~~----~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 539 (643)
+.+++ .++..+..++++|+.|++++|. .+++..+..+. .+++|+.|++++| .+++.++..++..+++|++|++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHCCCCCCEEEC
T ss_conf 655674088999999973988788988657898658999999874820227665589-9988999999854863686645
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 788998958899999506267757722677897999999850355452100
Q 006499 540 KHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKL 590 (643)
Q Consensus 540 ~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l 590 (643)
++| .+++.++..+...+++|++|++++|++++.+.......+|.+....+
T Consensus 496 ~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 496 RGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp ESC-CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 289-88679999999866756846773885888999999986998479984
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=1.00 E-value=1 Score=264.72 Aligned_cols=414 Identities=19% Similarity=0.304 Sum_probs=283.8
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCH---HH
Q ss_conf 999997198875898258745937899851-58888668724898888114999975399974998506446694---66
Q 006499 191 IDLLCKKCLDLKSLDVSYLKLTNDSFCSIA-TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSS---TG 266 (643)
Q Consensus 191 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~ 266 (643)
+..+...+++|++|+++++.+++..+..+. .+++|+.|++.+|..++..++..+...+++|++|++.+|. ++. ..
T Consensus 97 l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~ 175 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHW 175 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGG
T ss_pred HHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHH
T ss_conf 99999768887759755857759999999984999868768896997878999999768998889575875-67751579
Q ss_pred HHHHHHCCCCCCEEECCCCCCCCCHHHHH-HHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCC-CCHH--
Q ss_conf 99998509983189549987745377999-7306998668983797559779999973298875894268899-9978--
Q 006499 267 LISVIRGHSGLLQLDAGHCFSELSTTLLH-HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLG-VTNT-- 342 (643)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~-- 342 (643)
+..+...+++|++|+++++...+....+. ....+++|+.|.+.++.. ...+..+...+++|++|.+..+.. +...
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCC-HHHHHHHHHCCCCCEECCCCCCCCCCCHHHH
T ss_conf 998750299674887006678678899999997499784886678776-7779999863986557145434476663668
Q ss_pred -HHHHHHHCCCCCCEE-ECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHH
Q ss_conf -999998479998488-368999999699999984199984995467888898899998633999629976999898621
Q 006499 343 -GITQLVSGCVNLKTI-DLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK 420 (643)
Q Consensus 343 -~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~ 420 (643)
++...+..+++|+.+ .+. ......+..+...+++|++|++++|. +++.++..+...+++|++|++.+| +++.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~ 328 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFW---DAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDA 328 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCB---TCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred HHHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHCCCCCCEEECCCC--CCHH
T ss_conf 89999985499763035876---56655678888764789989732887-887999999960987689958676--3788
Q ss_pred HHHHHC-CCCCCCEECC--------CCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECC--
Q ss_conf 333300-6988767625--------78777795989999825987768864899998928799998349999899558--
Q 006499 421 GLEYLS-RCSELLFLKL--------GLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLS-- 489 (643)
Q Consensus 421 ~~~~l~-~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~-- 489 (643)
++..+. .+++|+.|++ ..|..+++.++..+...+++|+.|.+ .|+.+++.++..+...+++|+.|++.
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 999999868788889972476544334788788899999870631799997-6577689999999860888652476234
Q ss_pred ---CCCCCC----HHHHHHH-HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf ---987789----6889984-55999886851597776878999998429967587057889989588999995062677
Q 006499 490 ---YCVNVT----DRGMEHI-RFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 561 (643)
Q Consensus 490 ---~c~~l~----~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 561 (643)
+|+.++ +.++..+ ..+++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..+...+++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC--CCCHHHHHHHHHHCHHCCEEECCCC-CCCHHHHHHHHHCCCCCC
T ss_conf 6777464567723548999995589866795067--4168999999975311618654479-984899999985499868
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 577226778979999998503554521002478889888999997239987565740
Q 006499 562 QINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLL 618 (643)
Q Consensus 562 ~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~c~~l~~l~l~ 618 (643)
.|++++|++++.+....+..+++|+.|++++|+ ++.+++..+. ..+|+++...+.
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~-~~lp~l~i~~~~ 539 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGACKLLG-QKMPKLNVEVID 539 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHH-HHCTTEEEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEEEECCC-CCHHHHHHHH-HHCCCCEEEEEC
T ss_conf 788869987399999999758887789614787-9799999999-769997799835
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=1.00 E-value=1 Score=262.56 Aligned_cols=417 Identities=17% Similarity=0.185 Sum_probs=276.8
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC-CCC-CCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC--CH
Q ss_conf 999999971988758982587459378998515-888-86687248988881149999753999749985064466--94
Q 006499 189 LGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIAT-LAK-LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFV--SS 264 (643)
Q Consensus 189 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~ 264 (643)
..+..+...+++|++|+++++.+++..+..+.. +++ |+.|++.+|..++..++..+...+++|+.|++.+|... ..
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCH
T ss_conf 89999996488988697113176699999999742026769978678996878999999619997889775552457530
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCC-CC-HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCC-CH
Q ss_conf 669999850998318954998774-53-7799973069986689837975597799999732988758942688999-97
Q 006499 265 TGLISVIRGHSGLLQLDAGHCFSE-LS-TTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGV-TN 341 (643)
Q Consensus 265 ~~~~~~~~~~~~L~~L~l~~~~~~-~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~ 341 (643)
..+..+...+++|++|++.++... .. ......+..+++|+.|.+.++.+.. +......+++|++|.+..+... ..
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHH--HHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 69998775188741788660577766889999999619998688656766787--8988743467775143413466554
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 89999984799984883689999996999999841999849954678888988999986339996299769998986213
Q 006499 342 TGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG 421 (643)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~ 421 (643)
.........+++|+.+.+.+. ....+..+...+++|++|++++|. +++..+..+...+++|++|++.+ .+.+.+
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~ 333 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRG 333 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCEEECCCCC-CCHHHHHHHHHHCCCCCEEECCC--CCCHHH
T ss_conf 789987630210354682313---466789988643878688247886-77778999997384877786157--668799
Q ss_pred HHHH-CCCCCCCEECCCC----------CCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECC-
Q ss_conf 3330-0698876762578----------777795989999825987768864899998928799998349999899558-
Q 006499 422 LEYL-SRCSELLFLKLGL----------CENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLS- 489 (643)
Q Consensus 422 ~~~l-~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~- 489 (643)
+..+ ..+++|+.|++.+ |..+++.++..+...+++|+.|++ .|+.+++.++..+...+++|+.|++.
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE-ECCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999986879998994067655333344685378999999850835708986-568753999999996288876799862
Q ss_pred --CCCCCCH----HHHHH-HHCCCCCCEEEECCCC-CCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf --9877896----88998-4559998868515977-76878999998429967587057889989588999995062677
Q 006499 490 --YCVNVTD----RGMEH-IRFIEDLSDLELRGLT-KITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR 561 (643)
Q Consensus 490 --~c~~l~~----~~~~~-l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 561 (643)
.|+.+++ .++.. +..+++|+.|+++.|. .+++.++..+...+++|+.|++++| .+++.++..+...+++|+
T Consensus 413 ~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp CSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHCCCCCC
T ss_conf 3787655674088999999973988788988657898658999999874820227665589-998899999985486368
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 57722677897999999850355452100247888988899999723998756574
Q 006499 562 QINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKL 617 (643)
Q Consensus 562 ~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~c~~l~~l~l 617 (643)
.|++++|++++.++......+++|+.|.+++|. ++..++..+. ..+|.+....+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~-~~~p~l~~~~~ 545 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQ-MARPYWNIELI 545 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGG-GCCTTEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEECCCCC-CCHHHHHHHH-HHCCCCEEEEE
T ss_conf 664528988679999999866756846773885-8889999999-86998479984
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=260.18 Aligned_cols=418 Identities=17% Similarity=0.094 Sum_probs=189.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 89865883476678538999999971988758982587459378998515888866872489888811499997539997
Q 006499 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (643)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (643)
+++|++|++.++..... ++. ...+++|++|+++++.++......+..+++|+.|++.+|........ . .+++|
T Consensus 199 l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~-~l~~L 271 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---L-PLKSL 271 (768)
T ss_dssp CTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---C-CCTTC
T ss_pred CCCCCEEECCCCCCCCC--CCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC---C-CCCCC
T ss_conf 78689898928827887--711-12699999897948858781657774488889898988866571672---4-36878
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 49985064466946699998509983189549987745377999730699866898379755977999997329887589
Q 006499 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (643)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (643)
+.|++.++... ......+...+++|++|+++++. +.......+..+++|+.|.+.++.+...........+++|++|
T Consensus 272 ~~L~L~~n~l~-~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 272 QYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp CEEECCSSEEE-ESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CEEECCCCCCC-CCCCHHHHHHCCCCCEEECCCCC--CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 98979178557-72588888446868899896896--7784236775587766778978852573797887248888788
Q ss_pred ECCCCCCCCHHHHHHHHHC--------------------------CCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEEC
Q ss_conf 4268899997899999847--------------------------99984883689999996999999841999849954
Q 006499 332 GLSKCLGVTNTGITQLVSG--------------------------CVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKI 385 (643)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 385 (643)
++.++. +.......+... +++|+.|++.++. +... .......+++|+.|++
T Consensus 349 ~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 349 DLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLSNCSELVSLHL 425 (768)
T ss_dssp ECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGGGCTTCCEEEC
T ss_pred ECCCCC-CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC-CCCC-CCHHHHCCCCCCEEEC
T ss_conf 484784-376230989863227719986278747876766653324776189897784-6542-4877756898798989
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 67888898899998633999629976999898621333300698876762578777795989999825987768864899
Q 006499 386 ESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKC 465 (643)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 465 (643)
+++. ++......+ ..+++|+.|++++ +.+....+..+..+++|+.|++++| .++...... ...+++|+.|++++|
T Consensus 426 s~N~-l~~~~p~~l-~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 426 SFNY-LSGTIPSSL-GSLSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSG-LSNCTNLNWISLSNN 500 (768)
T ss_dssp CSSE-EESCCCGGG-GGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCC-CCCCCCHHH-HCCCCCCEEECCC-CCCCCCCCHHHCCCCCCEEEEECCC-CCCCCCCHH-HHCCCCCCEEECCCC
T ss_conf 5884-668546777-4499889898978-8154718978828777329990199-513758878-816998998975399
Q ss_pred CCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHH--HHH------------------
Q ss_conf 998928799998349999899558987789688998455999886851597776878--999------------------
Q 006499 466 SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSA--GLT------------------ 525 (643)
Q Consensus 466 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~------------------ 525 (643)
.++.. +......+++|+.|++++| .++......+..+++|+.|++++|.-.... .+.
T Consensus 501 -~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 501 -RLTGE-IPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp -CCCSC-CCGGGGGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred -CCCCC-CCHHHHCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCC
T ss_conf -51896-8768856899998989789-43374887770889899898988846882795786042122320134542111
Q ss_pred ------------------------------------------------HHHHCCCCCCEEECCCCCCCCHHHHHHHHHHC
Q ss_conf ------------------------------------------------99842996758705788998958899999506
Q 006499 526 ------------------------------------------------ALAAGCKRLADLDLKHCAKIDDSGFWALAYYS 557 (643)
Q Consensus 526 ------------------------------------------------~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~ 557 (643)
..+..+++|+.|++++| .++......+ ..+
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l-~~l 655 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEI-GSM 655 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGG-GGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC-CCCCCCCHHH-HCC
T ss_conf 13444322223322210013556323200232110011331004627433403356657978588-0155587788-414
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 26775772267789799999985035545210024788--89888999997239987565740
Q 006499 558 QNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN--CTREGFELALRSCCMRIKKVKLL 618 (643)
Q Consensus 558 ~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~--~~~~~~~~~~~~~c~~l~~l~l~ 618 (643)
++|+.|++++|.++...+ ..++.+++|+.|+++++.- .-+..+ ...+.|+.+++.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l-----~~l~~L~~L~ls 712 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAM-----SALTMLTEIDLS 712 (768)
T ss_dssp TTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGG-----GGCCCCSEEECC
T ss_pred CCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHH-----HCCCCCCEEECC
T ss_conf 157878486880388789-678477789989897880238688677-----578878978796
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=254.38 Aligned_cols=528 Identities=18% Similarity=0.144 Sum_probs=292.3
Q ss_pred HHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 99998509997173346898978135887865422101465436722788777846799997509998576278999889
Q 006499 57 LFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFG 136 (643)
Q Consensus 57 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (643)
++..+..+.+|+.++++...... ... .....++|++|+++++.-............+++|++|+++++....
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~-l~~-------~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 140 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHING-SVS-------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEE-CCC-------CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCC-CCH-------HHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 69657316802246786888678-703-------3245788998989898578707896787278899989896882677
Q ss_pred HHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH--HHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH
Q ss_conf 08889853056975784588876564759999--9718986588347667853899999997198875898258745937
Q 006499 137 DREAAALSFASGLKEVKLDKCLNVTDVGLAKI--AVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTND 214 (643)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 214 (643)
......+..+++|++|+++++ .++......+ ...+++|++|++.++........ ..+++|++|+++++.+...
T Consensus 141 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~ 215 (768)
T 3rgz_A 141 PGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTG 215 (768)
T ss_dssp CSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSC
T ss_pred CCCHHHHCCCCCCCEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC----CCCCCCCEEECCCCCCCCC
T ss_conf 479778563889998989798-35885871556643589889898978803465784----5478689898928827887
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHHHH
Q ss_conf 89985158888668724898888114999975399974998506446694669999850998318954998774537799
Q 006499 215 SFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLL 294 (643)
Q Consensus 215 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 294 (643)
... +..+++|+.|++.++. +.......+.. +++|+.|+++++....... .. .+++|++|++.++.. .....
T Consensus 216 ~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~L~~n~l--~~~ip 286 (768)
T 3rgz_A 216 IPF-LGDCSALQHLDISGNK-LSGDFSRAIST-CTELKLLNISSNQFVGPIP--PL--PLKSLQYLSLAENKF--TGEIP 286 (768)
T ss_dssp CCB-CTTCCSCCEEECCSSC-CCSCHHHHTTT-CSSCCEEECCSSCCEESCC--CC--CCTTCCEEECCSSEE--EESCC
T ss_pred CCC-CCCCCCCCEEECCCCC-CCCCCCHHHHC-CCCCCEEECCCCCCCCCCC--CC--CCCCCCEEECCCCCC--CCCCC
T ss_conf 711-1269999989794885-87816577744-8888989898886657167--24--368789897917855--77258
Q ss_pred HHHCC-CCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCC--CHHHHH
Q ss_conf 97306-998668983797559779999973298875894268899997899999847999848836899999--969999
Q 006499 295 HHMRD-LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSI--TDDAIS 371 (643)
Q Consensus 295 ~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~ 371 (643)
..+.. +++|+.|.++++.+.......+ ..+++|++|++.++. +........+..+++|+.|++.++... -...+.
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 364 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364 (768)
T ss_dssp CCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCC-CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 8888446868899896896778423677-558776677897885-25737978872488887884847843762309898
Q ss_pred HHHHCCCCCCEEECCCCCC-------------------------CCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHC
Q ss_conf 9984199984995467888-------------------------898899998633999629976999898621333300
Q 006499 372 AIADSCRGLVCLKIESCNM-------------------------ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS 426 (643)
Q Consensus 372 ~~~~~~~~L~~L~l~~~~~-------------------------~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~ 426 (643)
.. .++|+.|+++++.. ++.. +......+++|++|++++ +.++...+..+.
T Consensus 365 ~l---~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~ 439 (768)
T 3rgz_A 365 NL---SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSF-NYLSGTIPSSLG 439 (768)
T ss_dssp HH---TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCS-SEEESCCCGGGG
T ss_pred HH---HCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCC-CCCCCCCCHHHH
T ss_conf 63---2277199862787478767666533247761898977846542-487775689879898958-846685467774
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 69887676257877779598999982598776886489999892879999834999989955898778968899845599
Q 006499 427 RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIE 506 (643)
Q Consensus 427 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 506 (643)
.+++|+.|++.+| .+....... ...+++|+.|++.++ .++.. +......+++|+.|++++| .++......+..++
T Consensus 440 ~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 440 SLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLETLILDFN-DLTGE-IPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLE 514 (768)
T ss_dssp GCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSS-CCCSC-CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCT
T ss_pred CCCCCCEEECCCC-CCCCCCCHH-HCCCCCCEEEEECCC-CCCCC-CCHHHHCCCCCCEEECCCC-CCCCCCCHHHHCCC
T ss_conf 4998898989788-154718978-828777329990199-51375-8878816998998975399-51896876885689
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHH---------------------------------
Q ss_conf 98868515977768789999984299675870578899895889999---------------------------------
Q 006499 507 DLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWAL--------------------------------- 553 (643)
Q Consensus 507 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~--------------------------------- 553 (643)
+|+.|++++|. +..... ..+..+++|+.|++++| .++......+
T Consensus 515 ~L~~L~L~~N~-l~~~~p-~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 515 NLAILKLSNNS-FSGNIP-AELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp TCCEEECCSSC-CEEECC-GGGGGCTTCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred CCCEEECCCCC-CCCCCC-HHHCCCCCCCEEECCCC-CCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99989897894-337488-77708898998989888-4688279578604212232013454211113444322223322
Q ss_pred ------------------------------------HHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC--
Q ss_conf ------------------------------------950626775772267789799999985035545210024788--
Q 006499 554 ------------------------------------AYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN-- 595 (643)
Q Consensus 554 ------------------------------------~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~-- 595 (643)
...+++|+.|++++|.++...+ ..++.++.|+.|+++++.-
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC
T ss_conf 2100135563232002321100113310046274334033566579785880155587-788414157878486880388
Q ss_pred CCHHHHHHHHHHCCCCCCEEEECCH-HHHCCCH
Q ss_conf 8988899999723998756574011-2211697
Q 006499 596 CTREGFELALRSCCMRIKKVKLLAP-IRFLLSS 627 (643)
Q Consensus 596 ~~~~~~~~~~~~~c~~l~~l~l~~~-~~~~~~~ 627 (643)
.-+..+ ..+++|+.+++... +....|.
T Consensus 671 ~ip~~l-----~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 671 SIPDEV-----GDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCGGG-----GGCTTCCEEECCSSCCEECCCG
T ss_pred CCCHHH-----HCCCCCCEEECCCCCCCCCCCH
T ss_conf 789678-----4777899898978802386886
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=246.56 Aligned_cols=489 Identities=15% Similarity=0.137 Sum_probs=220.0
Q ss_pred CCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf 99717334689897813588786542210146543672278877784679999750999857627899988908889853
Q 006499 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (643)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (643)
++++.|+++++. +...... .....++|++|+++++. +....... ...+++|++|+++++. +.......+.
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~------~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 102 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNT------TFSRLINLTFLDLTRCQ-IYWIHEDT-FQSQHRLDTLVLTANP-LIFMAETALS 102 (606)
T ss_dssp TTCCEEECTTCC-CSEECTT------TSTTCTTCSEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCC-CSEECTTTTS
T ss_pred CCCCEEECCCCC-CCCCCHH------HHCCCCCCEEEECCCCC-CCEECHHH-CCCCCCCCEEECCCCC-CCCCCHHHHC
T ss_conf 867589815873-4717966------72567665289788983-55248511-3684336764488985-6545865523
Q ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 05697578458887656475999997189865883476678538999999971988758982587459378998515888
Q 006499 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (643)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (643)
.+++|++|++.++ .++......+ ..+++|++|.+.++. +.....+... .+++|+.|+++++.+.......+..+++
T Consensus 103 ~l~~L~~L~L~~n-~i~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 103 GPKALKHLFFIQT-GISSIDFIPL-HNQKTLESLYLGSNH-ISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp SCTTCCEEECTTS-CCSCGGGSCC-TTCTTCCEEECCSSC-CCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred CCCCCCEEECCCC-CCCCCCCCHH-CCCCCCCEEECCCCC-CCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHHHHCC
T ss_conf 4421537652126-7665781012-237822389887983-4114765456-8765687776568445549656332215
Q ss_pred CC--EEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCC---------------------------
Q ss_conf 86--6872489888811499997539997499850644669466999985099---------------------------
Q 006499 225 LE--SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHS--------------------------- 275 (643)
Q Consensus 225 L~--~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------------------- 275 (643)
|+ .+++.++. +.......+ . ..+|+.+++.++... ........
T Consensus 179 L~~l~L~l~~n~-l~~~~~~~~-~-~~~L~~L~l~~~~~~-----~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 179 ATNLSLNLNGND-IAGIEPGAF-D-SAVFQSLNFGGTQNL-----LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp CCSEEEECTTCC-CCEECTTTT-T-TCEEEEEECTTCSCH-----HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred CCEEEEECCCCC-CCCCCHHHH-H-HCCCCCCCCCCCHHH-----HHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCH
T ss_conf 640389667981-475486673-0-010013556772667-----77765133564422002011026412268667430
Q ss_pred ----CCCEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCC
Q ss_conf ----8318954998774537799973069986689837975597799999732988758942688999978999998479
Q 006499 276 ----GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351 (643)
Q Consensus 276 ----~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (643)
+++.++++++. +.......+..+++|+.|.++++.+.. +......+++|++|++.++ .+..... ..+..+
T Consensus 251 l~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~l 324 (606)
T 3t6q_A 251 LCEMSVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSAN-KFENLCQ-ISASNF 324 (606)
T ss_dssp GGGSEEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTC-CCSBGGG-GCGGGC
T ss_pred HHCCCEEEEEEECCC--CCCCCHHHHCCCCCCCEEECCCCCCCC--CCHHHCCCCCCCEEECCCC-CCCCCCH-HHHHCC
T ss_conf 320750599944576--585577774456678889562882677--7821416546888977168-7686760-233015
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH-HHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCC
Q ss_conf 99848836899999969999998419998499546788889889-99986339996299769998986213333006988
Q 006499 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSE 430 (643)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~ 430 (643)
++|+.|++.++....... ......+++|+.|+++++. +.... .......+++|++|++++ +.+.......+..+++
T Consensus 325 ~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELG-TGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQ 401 (606)
T ss_dssp TTCSEEECCSCSSCCBCC-SSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCCCCC-HHHHHCCCCCCEEECCCCC-CCCCCCCCHHCCCCCCCCEEECCC-CCCCCCCHHHHCCCCC
T ss_conf 768988898997444346-2455066758988788996-664567522105678889898989-9677578887347745
Q ss_pred CCEECCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHH---HHHHCCCC
Q ss_conf 767625787777959899998259877688648999989287999983499998995589877896889---98455999
Q 006499 431 LLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGM---EHIRFIED 507 (643)
Q Consensus 431 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~~~~ 507 (643)
|+.|++++| .+...........+++|+.|++++| .++... ......+++|+.|++++| .++...+ ..+..+++
T Consensus 402 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 402 LELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS-EQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTC-TTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTT
T ss_pred CCEEECCCC-CCCCCCCCHHHHCCCCCCEEECCCC-CCCCCC-HHHHHCCCCCCEEECCCC-CCCCCCCCCCHHHCCCCC
T ss_conf 776878888-6777565212417655888989898-557768-778737887888989899-888543454312404887
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 88685159777687899999842996758705788998958899999506267757722677897999999850355452
Q 006499 508 LSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQD 587 (643)
Q Consensus 508 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~ 587 (643)
|+.|++++| .++...... +..+++|+.|++++| .++......+. .+++| .|++++|.++.... ..+..+++|+.
T Consensus 478 L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~-~~~~~l~~L~~ 551 (606)
T 3t6q_A 478 LEILVLSFC-DLSSIDQHA-FTSLKMMNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLASNHISIILP-SLLPILSQQRT 551 (606)
T ss_dssp CCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCSSCCCCCCG-GGHHHHHTSSE
T ss_pred CCEEECCCC-CCCCCCHHH-HCCCCCCCEEECCCC-CCCCCCHHHHC-CCCCC-EEECCCCCCCCCCH-HHCCCCCCCCE
T ss_conf 668879999-667068646-326567888989898-06868966847-56651-89876894142687-66256778788
Q ss_pred CCCCCCC
Q ss_conf 1002478
Q 006499 588 AKLVHLT 594 (643)
Q Consensus 588 L~l~~c~ 594 (643)
+.+.+++
T Consensus 552 L~l~~N~ 558 (606)
T 3t6q_A 552 INLRQNP 558 (606)
T ss_dssp EECTTCC
T ss_pred EECCCCC
T ss_conf 9677998
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=244.74 Aligned_cols=492 Identities=15% Similarity=0.094 Sum_probs=325.3
Q ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 21014654367227887778467999975099985762789998890888985305697578458887656475999997
Q 006499 91 SLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAV 170 (643)
Q Consensus 91 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~ 170 (643)
+.....++++|+++++ .++...... ...+++|++|+++++ .+.......+..+++|++|+++++ .+....... ..
T Consensus 28 P~~l~~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~ 102 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFN-VLPTIQNTT-FSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETA-LS 102 (606)
T ss_dssp CTTSCTTCCEEECTTC-CCSEECTTT-STTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCSEECTTT-TS
T ss_pred CCCCCCCCCEEECCCC-CCCCCCHHH-HCCCCCCEEEECCCC-CCCEECHHHCCCCCCCCEEECCCC-CCCCCCHHH-HC
T ss_conf 6778986758981587-347179667-256766528978898-355248511368433676448898-565458655-23
Q ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 18986588347667853899999997198875898258745937899851588886687248988881149999753999
Q 006499 171 RCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPL 250 (643)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 250 (643)
.+++|++|++.++. +....... ...+++|++|+++++.+.......+..+++|+.|++.++ .+.......+.. +++
T Consensus 103 ~l~~L~~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~ 178 (606)
T 3t6q_A 103 GPKALKHLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSS-LQQ 178 (606)
T ss_dssp SCTTCCEEECTTSC-CSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHT-TTT
T ss_pred CCCCCCEEECCCCC-CCCCCCCH-HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHHH-HCC
T ss_conf 44215376521267-66578101-223782238988798341147654568765687776568-445549656332-215
Q ss_pred CC--EEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCC--------------------------C--
Q ss_conf 74--99850644669466999985099831895499877453779997306--------------------------9--
Q 006499 251 LK--TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD--------------------------L-- 300 (643)
Q Consensus 251 L~--~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--------------------------~-- 300 (643)
|+ .+++.++. +....... -....++.+++.++.. . ...+..+.. +
T Consensus 179 L~~l~L~l~~n~-l~~~~~~~--~~~~~L~~L~l~~~~~-~-~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 179 ATNLSLNLNGND-IAGIEPGA--FDSAVFQSLNFGGTQN-L-LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp CCSEEEECTTCC-CCEECTTT--TTTCEEEEEECTTCSC-H-HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred CCEEEEECCCCC-CCCCCHHH--HHHCCCCCCCCCCCHH-H-HHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHC
T ss_conf 640389667981-47548667--3001001355677266-7-77765133564422002011026412268667430320
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 98668983797559779999973298875894268899997899999847999848836899999969999998419998
Q 006499 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGL 380 (643)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 380 (643)
.+++.+.+.++.+.......+ ..+++|++|++.++ .++. +...+..+++|++|++.++. +..... .....+++|
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 327 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTF-HCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSL 327 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTC
T ss_pred CCEEEEEEECCCCCCCCHHHH-CCCCCCCEEECCCC-CCCC--CCHHHCCCCCCCEEECCCCC-CCCCCH-HHHHCCCCC
T ss_conf 750599944576585577774-45667888956288-2677--78214165468889771687-686760-233015768
Q ss_pred CEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH--HHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 49954678888988999986339996299769998986213--3330069887676257877779598999982598776
Q 006499 381 VCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG--LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQ 458 (643)
Q Consensus 381 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 458 (643)
+.|.++++......... ....+++|++|++++ +.+.... ...+..+++|+.|++++| .+....... ...+++|+
T Consensus 328 ~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~ 403 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTG-CLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQLE 403 (606)
T ss_dssp SEEECCSCSSCCBCCSS-TTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTTCS
T ss_pred CEEECCCCCCCCCCCHH-HHHCCCCCCEEECCC-CCCCCCCCCCHHCCCCCCCCEEECCCC-CCCCCCHHH-HCCCCCCC
T ss_conf 98889899744434624-550667589887889-966645675221056788898989899-677578887-34774577
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHH--HHHHHCCCCCCE
Q ss_conf 886489999892879999834999989955898778968899845599988685159777687899--999842996758
Q 006499 459 GLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGL--TALAAGCKRLAD 536 (643)
Q Consensus 459 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~ 536 (643)
.|+++++ .++..........+++|+.|++++| .++......+..+++|+.|++++|. +....+ ...+..+++|+.
T Consensus 404 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 404 LLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp EEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCE
T ss_pred EEECCCC-CCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCEEECCCCC-CCCCCCCCCHHHCCCCCCCE
T ss_conf 6878888-6777565212417655888989898-5577687787378878889898998-88543454312404887668
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCCCE
Q ss_conf 70578899895889999950626775772267789799999985035545210024788--8988899999723998756
Q 006499 537 LDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN--CTREGFELALRSCCMRIKK 614 (643)
Q Consensus 537 L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~--~~~~~~~~~~~~~c~~l~~ 614 (643)
|++++| .++......+ ..+++|+.|++++|+++.... ..+..++.| .|+++++.- +.+..+.. +++|+.
T Consensus 481 L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~~~~~~~-----l~~L~~ 551 (606)
T 3t6q_A 481 LVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIILPSLLPI-----LSQQRT 551 (606)
T ss_dssp EECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCCGGGHHH-----HHTSSE
T ss_pred EECCCC-CCCCCCHHHH-CCCCCCCEEECCCCCCCCCCH-HHHCCCCCC-EEECCCCCCCCCCHHHCCC-----CCCCCE
T ss_conf 879999-6670686463-265678889898980686896-684756651-8987689414268766256-----778788
Q ss_pred EEEC
Q ss_conf 5740
Q 006499 615 VKLL 618 (643)
Q Consensus 615 l~l~ 618 (643)
+++.
T Consensus 552 L~l~ 555 (606)
T 3t6q_A 552 INLR 555 (606)
T ss_dssp EECT
T ss_pred EECC
T ss_conf 9677
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=239.53 Aligned_cols=496 Identities=16% Similarity=0.111 Sum_probs=193.3
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 46543672278877784679999750999857627899988908889853056975784588876564759999971898
Q 006499 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (643)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 174 (643)
.++|++|+++++. ++...... ...+++|++|+++++. +.......+..+++|++|++.++ .++......+ ..+++
T Consensus 72 l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~ 146 (680)
T 1ziw_A 72 LPMLKVLNLQHNE-LSQLSDKT-FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQ-VQLEN 146 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTT-TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSS-SCCTT
T ss_pred CCCCCEEECCCCC-CCCCCHHH-HCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHH-CCCCC
T ss_conf 6676888899985-67568545-3038888989898996-68539667415678888989899-5246672111-24556
Q ss_pred CCEEECCCCCCCCHHHHHHH-HHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH--CCCCC
Q ss_conf 65883476678538999999-9719887589825874593789985158888668724898888114999975--39997
Q 006499 175 LERLSLKWCMEISDLGIDLL-CKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLES--GCPLL 251 (643)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L 251 (643)
|++|.+.++. +.......+ ...+++|+.|+++++.+.......+..+++|+.+.+.++. +.......+.. ..++|
T Consensus 147 L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 147 LQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSI 224 (680)
T ss_dssp CCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCC
T ss_pred CCEEECCCCC-CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC
T ss_conf 7779745884-36529788624466632179888982565581555322344554305664-680567778777531510
Q ss_pred CEEEECCCCCCCHHHHHHHHHCC--CCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 49985064466946699998509--9831895499877453779997306998668983797559779999973298875
Q 006499 252 KTIFVSRCKFVSSTGLISVIRGH--SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLV 329 (643)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 329 (643)
+.|++.++. +....... ...+ ++|++|+++++.. .......+..+++|+.|.++++.+.......+ ..+++|+
T Consensus 225 ~~L~L~~n~-l~~~~~~~-~~~l~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 299 (680)
T 1ziw_A 225 RNLSLSNSQ-LSTTSNTT-FLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVR 299 (680)
T ss_dssp CEEECTTSC-CCEECTTT-TGGGGGSCCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCC
T ss_pred CEEECCCCC-CCCCCHHH-HHCCCCCCCCEEECCCCCC--CCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH-CCCCCCC
T ss_conf 088745774-36468667-5146767788877878876--75680211674105685577885676586562-6788855
Q ss_pred EEECCCCCCCCHHHHHH-------HHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCC-------------
Q ss_conf 89426889999789999-------9847999848836899999969999998419998499546788-------------
Q 006499 330 EIGLSKCLGVTNTGITQ-------LVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN------------- 389 (643)
Q Consensus 330 ~L~l~~~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 389 (643)
.|++.++.......... .+..+++|++|++.++. +.... ......+++|+.|+++++.
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred EEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCC-HHHHCCCCCCCEEECCCCCHHHHHCCHHHHCC
T ss_conf 77363313213333355454386562467778888798982-68788-55740656872898879801443235322024
Q ss_pred --------------CCCHHHHHHHHHCCCCCCEEECCCCCCCCHH-HHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCC
Q ss_conf --------------8898899998633999629976999898621-3333006988767625787777959899998259
Q 006499 390 --------------MITEKGLYQLGSFCLRLEEIDLTDCNGVNDK-GLEYLSRCSELLFLKLGLCENISDKGLFYIASNC 454 (643)
Q Consensus 390 --------------~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 454 (643)
.++...... ...+++|+.|++++ +.+... ....+..+++|+.|++++|. +....... ...+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~~ 453 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS-FALV 453 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTT-TTTC
T ss_pred CCCCCCCEEECCCCCCCEECHHH-HHCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCEEECCCCC-CCEECHHH-HHCC
T ss_conf 55686766889999777677544-20778888886778-757543575532575461278448997-54227645-5007
Q ss_pred CCCCEEECCCCCCCCH-HHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHH-------H
Q ss_conf 8776886489999892-8799998349999899558987789688998455999886851597776878999-------9
Q 006499 455 LRIQGLDLYKCSGIGD-DGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLT-------A 526 (643)
Q Consensus 455 ~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~ 526 (643)
++|+.|++.++. +.. .........+++|+.|+++++ .++......+..+++|+.|+++++ .++..... .
T Consensus 454 ~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 454 PSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIY 530 (680)
T ss_dssp TTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCC
T ss_pred CCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHCCCCCCH
T ss_conf 543101101464-4225667764555787899989999-877679446345534688858899-7300000004677414
Q ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHH
Q ss_conf 984299675870578899895889999950626775772267789799999985035545210024788--898889999
Q 006499 527 LAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTN--CTREGFELA 604 (643)
Q Consensus 527 ~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~~~~L~~L~l~~c~~--~~~~~~~~~ 604 (643)
.+..+++|+.|++++| .++..... ....+++|+.|++++|.++.... ..+..+++|+.|++.++.- +.+..+..
T Consensus 531 ~~~~l~~L~~L~L~~N-~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~- 606 (680)
T 1ziw_A 531 FLKGLSHLHILNLESN-GFDEIPVE-VFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFGP- 606 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHHHHH-
T ss_pred HHCCCCCCCEEECCCC-CCCCCCHH-HCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCHHHHCC-
T ss_conf 2337998888889999-78877977-73466675223899997776797-68378988888989999687059668301-
Q ss_pred HHHCCCCCCEEEEC
Q ss_conf 97239987565740
Q 006499 605 LRSCCMRIKKVKLL 618 (643)
Q Consensus 605 ~~~~c~~l~~l~l~ 618 (643)
.+++|+.+++.
T Consensus 607 ---~~~~L~~l~l~ 617 (680)
T 1ziw_A 607 ---AFRNLTELDMR 617 (680)
T ss_dssp ---HHTTCSEEECT
T ss_pred ---CCCCCCEEECC
T ss_conf ---14665779831
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=239.42 Aligned_cols=504 Identities=16% Similarity=0.120 Sum_probs=202.1
Q ss_pred HHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHH
Q ss_conf 99850999717334689897813588786542210146543672278877784679999750999857627899988908
Q 006499 59 ILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDR 138 (643)
Q Consensus 59 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 138 (643)
..+..+++|+.|+++++. +...... .....++|++|+++++. +....... ...+++|++|+++++. +...
T Consensus 67 ~~~~~l~~L~~L~L~~n~-l~~l~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~ 136 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNE-LSQLSDK------TFAFCTNLTELHLMSNS-IQKIKNNP-FVKQKNLITLDLSHNG-LSST 136 (680)
T ss_dssp THHHHCTTCCEEECCSSC-CCCCCTT------TTTTCTTCSEEECCSSC-CCCCCSCT-TTTCTTCCEEECCSSC-CSCC
T ss_pred HHHHCCCCCCEEECCCCC-CCCCCHH------HHCCCCCCCEEECCCCC-CCCCCHHH-CCCCCCCCEEECCCCC-CCCC
T ss_conf 787406676888899985-6756854------53038888989898996-68539667-4156788889898995-2466
Q ss_pred HHHHHHHCCCCCEEECCCCCCCCHHHHHHHH-HHCCCCCEEECCCCCCCCH------------------------HHHHH
Q ss_conf 8898530569757845888765647599999-7189865883476678538------------------------99999
Q 006499 139 EAAALSFASGLKEVKLDKCLNVTDVGLAKIA-VRCVNLERLSLKWCMEISD------------------------LGIDL 193 (643)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~------------------------~~~~~ 193 (643)
....+..+++|++|++.++ .++......+. ..+++|+.|++.++. +.. .....
T Consensus 137 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 214 (680)
T 1ziw_A 137 KLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214 (680)
T ss_dssp CCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHH
T ss_pred CCHHHCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCCEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 7211124556777974588-436529788624466632179888982-56558155532234455430566468056777
Q ss_pred HH--HHCCCCCEEEECCCCCCHHHHHHHHCC--CCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 99--719887589825874593789985158--88866872489888811499997539997499850644669466999
Q 006499 194 LC--KKCLDLKSLDVSYLKLTNDSFCSIATL--AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLIS 269 (643)
Q Consensus 194 ~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 269 (643)
+. -..++|+.|+++++.+.......+..+ ++|+.|++.++. +.......+.. +++|+.|++.++. +... .+.
T Consensus 215 ~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~-~~~ 290 (680)
T 1ziw_A 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAW-LPQLEYFFLEYNN-IQHL-FSH 290 (680)
T ss_dssp HHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTT-CTTCCEEECCSCC-BSEE-CTT
T ss_pred HHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC-CCCCCCCCCCC-CCCCCEEECCCCC-CCCC-CHH
T ss_conf 877753151008874577436468667514676778887787887-67568021167-4105685577885-6765-865
Q ss_pred HHHCCCCCCEEECCCCCCCCCHH--------HHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCC-CC
Q ss_conf 98509983189549987745377--------9997306998668983797559779999973298875894268899-99
Q 006499 270 VIRGHSGLLQLDAGHCFSELSTT--------LLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLG-VT 340 (643)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~--------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~ 340 (643)
.+..+++|+.+++.++.. .... ....+..+++|+.|.++++.+.......+ ..+++|++|+++++.. ..
T Consensus 291 ~~~~l~~L~~L~L~~~~~-~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFT-KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTCTTCCEEECTTCBC-CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCC
T ss_pred HHCCCCCCCEEECCCHHH-HCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHH-CCCCCCCEEECCCCCHHHH
T ss_conf 626788855773633132-13333355454386562467778888798982687885574-0656872898879801443
Q ss_pred HHHHHHHH-HCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCH
Q ss_conf 78999998-47999848836899999969999998419998499546788889889999863399962997699989862
Q 006499 341 NTGITQLV-SGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (643)
Q Consensus 341 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~ 419 (643)
......+. -..++|+.+++.++. +..... .....+++|+.|+++++. +...........+++|++|++++ +.+..
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~ 444 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNK-ISKIES-DAFSWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSY-NKYLQ 444 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCS-CSEEE
T ss_pred HCCHHHHCCCCCCCCCEEECCCCC-CCEECH-HHHHCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCEEECCC-CCCCE
T ss_conf 235322024556867668899997-776775-442077888888677875-75435755325754612784489-97542
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCCHH-HHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 13333006988767625787777959-89999825987768864899998928799998349999899558987789688
Q 006499 420 KGLEYLSRCSELLFLKLGLCENISDK-GLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRG 498 (643)
Q Consensus 420 ~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 498 (643)
.....+..+++|+.|.+.++. +... ........+++|+.|+++++ .++... .....++++|+.|+++++ .++...
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~ 520 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHN-NLARLW 520 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCGGGG
T ss_pred ECHHHHHCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCEEECCCC-CCCCCC-HHHHCCCCCCCEEECCCC-CCCCCC
T ss_conf 276455007543101101464-4225667764555787899989999-877679-446345534688858899-730000
Q ss_pred H--------HHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9--------98455999886851597776878999998429967587057889989588999995062677577226778
Q 006499 499 M--------EHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCAL 570 (643)
Q Consensus 499 ~--------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l 570 (643)
. ..+..+++|+.|+++++ .++... ...+..+++|+.|+++++ .++..... ....+++|+.|++++|.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIP-VEVFKDLFELKIIDLGLN-NLNTLPAS-VFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSCC
T ss_pred HHHCCCCCCHHHCCCCCCCEEECCCC-CCCCCC-HHHCCCCCCCCEEECCCC-CCCCCCHH-HHCCCCCCCEEECCCCCC
T ss_conf 00046774142337998888889999-788779-777346667522389999-77767976-837898888898999968
Q ss_pred CHHHHHHHHH-HCCCCCCCCCCCC
Q ss_conf 9799999985-0355452100247
Q 006499 571 SDMALCMVMG-NMTRLQDAKLVHL 593 (643)
Q Consensus 571 ~~~~~~~~l~-~~~~L~~L~l~~c 593 (643)
+.... ..+. .+++|+.+.+.++
T Consensus 597 ~~~~~-~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 597 TSVEK-KVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp CBCCH-HHHHHHHTTCSEEECTTC
T ss_pred CCCCH-HHHCCCCCCCCEEECCCC
T ss_conf 70596-683011466577983189
Done!