BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006500
(643 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/636 (82%), Positives = 582/636 (91%), Gaps = 4/636 (0%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MDS F+FE PSDEE E E EE++ E + E ++ A QSPWDFA+YSE+V++EH RR
Sbjct: 1 MDSSFVFEVPSDEEPEYEPDEDEEEE--EGEGEGAAQTASQSPWDFASYSETVAEEHARR 58
Query: 61 RTTSVDFKITKSLQQRSVPIVD-NDHSDSEFDQHEDYKPEDEDDFSN-AGDTKSFFAPAD 118
TTSVDFKI+K+L+QR +PI + +D S+SE D EDY PED D+ ++ GD KSFFAPAD
Sbjct: 59 STTSVDFKISKALEQRRLPIPNQDDSSESESDHQEDYTPEDADEAASVGGDRKSFFAPAD 118
Query: 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
GASFHANSF+ELNLSRPLLRACEALGY+KPTPIQAACIP+ALTGRDICGSAITGSGKTAA
Sbjct: 119 GASFHANSFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAA 178
Query: 179 FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
F+LPTLERLL+RPKR+ AIRVL+LTPTRELAVQVHSM+EK+AQFTDIRCCL+VGGLS+KM
Sbjct: 179 FSLPTLERLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKM 238
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QETALRSMPD+VVATPGRMIDHLRNSMSVDL+DLAVLILDEADRLLELGF+AEI ELVRL
Sbjct: 239 QETALRSMPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRL 298
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
CPKRRQTMLFSAT+TE+VDEL+KLS+TKP+RL+ADPS KRP+TLTEEVVRIRRMREVNQE
Sbjct: 299 CPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQE 358
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
AVLL+LCSKTFT+K IIFSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+ALELFRK
Sbjct: 359 AVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRK 418
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
Q VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND
Sbjct: 419 QQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
RSLLK+I KRAGSKL+SRIVAEQSI KWS +IEQMEDQVAAILQEEREERILRKAEMEAT
Sbjct: 479 RSLLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEAT 538
Query: 539 KAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIK 598
KAENMIAHK++I++RPKRTWF TEKEKK KA K S+EK GSGN V SAQQAEDLK+K
Sbjct: 539 KAENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAEDLKMK 598
Query: 599 EKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQ 634
EKRKREREKNLPRK+RRKLEAARE LEDE+Q+ KL+
Sbjct: 599 EKRKREREKNLPRKKRRKLEAARERLEDENQIHKLK 634
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/657 (80%), Positives = 585/657 (89%), Gaps = 22/657 (3%)
Query: 1 MDSGFIFEPPSDEE----------------IEELQSEYEEDQGEEVDVEKPSKRAKQSPW 44
M +GF+FEPPSDEE E + E +++ E+ +K S R QSPW
Sbjct: 1 MATGFVFEPPSDEEPGLSHEEEEEEEDEQEEREEEEEDGDEEEEKEAEKKASNRKSQSPW 60
Query: 45 DFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIV-----DNDHSDSEFDQHEDYKPE 99
DFA+YSESV++EH RR TTSVD+KI+K+LQQRSVP+ D+ SDSE D+ EDY+ E
Sbjct: 61 DFASYSESVAEEHARRSTTSVDYKISKALQQRSVPLTTLDEDDDTASDSEPDKQEDYRAE 120
Query: 100 -DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
DED NA +TKSFFA A+GASFHANSFME+NLSRPLLRACE LGY+KPTPIQAACIPL
Sbjct: 121 EDEDVAHNADETKSFFASAEGASFHANSFMEINLSRPLLRACEVLGYTKPTPIQAACIPL 180
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
ALTGRDICGSAITGSGKTAAFALPTLERLL+RPKR+ AIRVLILTPTRELAVQVHSM+EK
Sbjct: 181 ALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVQAIRVLILTPTRELAVQVHSMVEK 240
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+AQFTDIRCCL+VGGLSTK+QE+ALRSMPDIVVATPGRMIDHLRN+MSVDLDDLAVLILD
Sbjct: 241 LAQFTDIRCCLIVGGLSTKVQESALRSMPDIVVATPGRMIDHLRNTMSVDLDDLAVLILD 300
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADRLLELGFSAEIHELVRLCPKRRQTMLFSAT+TE+++ELIKLSLTKPLRLSADPS KR
Sbjct: 301 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATMTEEINELIKLSLTKPLRLSADPSTKR 360
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
P+TLTEEVVRIRRMREVNQEAVLL+LCSKTFTS+VIIFSGTKQAAHRLKILFGLA KAA
Sbjct: 361 PATLTEEVVRIRRMREVNQEAVLLALCSKTFTSRVIIFSGTKQAAHRLKILFGLAGFKAA 420
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRL+ALELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPR+LTSYVHRV
Sbjct: 421 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRELTSYVHRV 480
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGREGYAVTFVTD DRSLLKAIAKRAGSKLKSRIVAEQSI KWS+IIEQMEDQVA
Sbjct: 481 GRTARAGREGYAVTFVTDTDRSLLKAIAKRAGSKLKSRIVAEQSIAKWSQIIEQMEDQVA 540
Query: 519 AILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
AILQEEREE +RKAEMEATKAENMIAH+++I +RPKRTWFVTEKEKKL KA KAS+ K
Sbjct: 541 AILQEEREEIAIRKAEMEATKAENMIAHRDDILSRPKRTWFVTEKEKKLVDKASKASMVK 600
Query: 579 GKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQV 635
KG ++V SAQQAE+LK+KEKRKREREKNLPRK+RRKL+AAREMLEDEDQ +K+ +
Sbjct: 601 EKGFESKVMSAQQAEELKLKEKRKREREKNLPRKKRRKLQAAREMLEDEDQTEKIDI 657
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/644 (82%), Positives = 583/644 (90%), Gaps = 12/644 (1%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVE----KPSKR-AKQSPWDFAAYSESVSD 55
M F+FEPPSDEE+E ++E ED+ EE + E KPSKR KQSPWDFA+YSESV++
Sbjct: 1 MAPSFVFEPPSDEEVELSEAEELEDEEEEAEGEGEEEKPSKRRQKQSPWDFASYSESVAE 60
Query: 56 EHFRRRTTSVDFKITKSLQQRSVPIV----DNDHSDSEFDQHEDYKPEDE--DDFSNAGD 109
EH RR TTS+D KI+++ QQ S P+ D SDSE D+ E YK ED+ D+ +N +
Sbjct: 61 EHARRSTTSIDDKISRARQQHSTPLTEHADDASSSDSEPDKQEVYKGEDDEGDEDTNVEE 120
Query: 110 TKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
KSFFAP++G SFHANSFMELNLSRPLLRACEALGY+KPTPIQAACIPLALTGRDICGSA
Sbjct: 121 RKSFFAPSEGTSFHANSFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSA 180
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
ITGSGKTAAFALPTLERLL+RPKRI AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL
Sbjct: 181 ITGSGKTAAFALPTLERLLFRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 240
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VVGGLSTK+QE +LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF+
Sbjct: 241 VVGGLSTKVQEASLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFN 300
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
AEIHELVRLCPKRRQTMLFSAT+TE+VD LIKLSLTKPLRLSADPSAKRP+ LTEEV+R+
Sbjct: 301 AEIHELVRLCPKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRL 360
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
RRMREVNQEAVLL+LCSKTFTSK IIFSGTKQAAHRLKILFGLA KAAELHGNLTQAQR
Sbjct: 361 RRMREVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQR 420
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L+ALELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPRDLTSY+HRVGRTARAGREGY
Sbjct: 421 LDALELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGY 480
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
AVTFVTDNDRSLLKAIAKRAGSKL+SRIVAEQSI KWS++IE ME+QVA +LQ+EREER
Sbjct: 481 AVTFVTDNDRSLLKAIAKRAGSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERA 540
Query: 530 LRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK-ASIEKGKGSGNEVTS 588
+RKAEMEATKAENMIAHK+EIF+RPKRTWFVTE+EK LA KA K +S+EK KGSGNEV S
Sbjct: 541 IRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEREKMLAAKAAKQSSVEKEKGSGNEVMS 600
Query: 589 AQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDK 632
AQQAEDLK+KEKRKREREKNLPRK+RRKL+AAREMLEDED +K
Sbjct: 601 AQQAEDLKMKEKRKREREKNLPRKKRRKLQAAREMLEDEDLTEK 644
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/642 (82%), Positives = 580/642 (90%), Gaps = 10/642 (1%)
Query: 1 MDSGFIFEPPSDEEIE---ELQSEYEEDQGEEVDVEKP-SKRAKQSPWDFAAYSESVSDE 56
M F+FEPPSDEEI+ E Q + + DQG E + ++P S+ +SPWDFA+YSESV+DE
Sbjct: 1 MALSFVFEPPSDEEIDLSEEEQQQEQADQGGEEEEDEPLSRHRTESPWDFASYSESVADE 60
Query: 57 HFRRRTTSVDFKITKSLQQRS---VPIVDND--HSDSEFDQHEDYKPEDEDD-FSNAGDT 110
H RR TTSVDFKI+K L+ RS P D+D S+ E D+ EDY+PED+DD SNAGD+
Sbjct: 61 HARRSTTSVDFKISKLLENRSANFTPTADDDGQSSEEESDRQEDYRPEDDDDGTSNAGDS 120
Query: 111 KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
SFFAP+DGASFHANSFMELNLSRPL+RACEALGY+KPTPIQAACIPLALTGRDICGSAI
Sbjct: 121 TSFFAPSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAI 180
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TGSGKTAAF+LPTLERLLYRPKR AIRVLILTP RELA+QVHSMIEK+AQFTDIRCCL+
Sbjct: 181 TGSGKTAAFSLPTLERLLYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLI 240
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGLS K QE ALRSMPD+VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA
Sbjct: 241 VGGLSRKEQEAALRSMPDVVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 300
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
EI ELVRLCPKRRQTMLFSAT+TE+V+ELIKLSLTKPLRLSADP+ KRP TLTEEVVR+R
Sbjct: 301 EIRELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRLR 360
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RMREVNQEAVLLSLCSKTFTSKVI+FSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL
Sbjct: 361 RMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRL 420
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
+ALELFRKQ VDFLIATDVAARGLDIIGV+TVIN+ACPRDLTSYVHRVGRTARAGREGYA
Sbjct: 421 DALELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYA 480
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI KWS+IIEQMEDQV AIL+EEREER L
Sbjct: 481 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIKKWSEIIEQMEDQVTAILREEREERAL 540
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQ 590
RKAEMEATKAENMI H+EEIF+RPK+TWF+T++EK+L KA KAS+EKGK SGNE SAQ
Sbjct: 541 RKAEMEATKAENMIVHQEEIFSRPKKTWFITDREKRLVAKAAKASLEKGKTSGNEAVSAQ 600
Query: 591 QAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDK 632
QAE+ K+KEKRKREREK+LPRK+RRKLEAAREMLE+E Q DK
Sbjct: 601 QAEEEKMKEKRKREREKDLPRKKRRKLEAAREMLEEEKQNDK 642
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/642 (81%), Positives = 578/642 (90%), Gaps = 10/642 (1%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEE---DQGEEVDVEKP-SKRAKQSPWDFAAYSESVSDE 56
M F+FEPPSDEEI+ + E ++ DQG E + ++P S+ +SPWDFA+YSESV+DE
Sbjct: 1 MALSFVFEPPSDEEIDLSEEEEQQEQADQGGEEEEDEPLSRHRTESPWDFASYSESVADE 60
Query: 57 HFRRRTTSVDFKITKSLQQRS---VPIVDND--HSDSEFDQHEDYKPEDEDD-FSNAGDT 110
H RR TTSVDFKI+K L+ RS P D+D S+ E D+ EDY+PED+DD SNAGD+
Sbjct: 61 HARRSTTSVDFKISKLLENRSANFTPTADDDGQSSEEESDRQEDYRPEDDDDGTSNAGDS 120
Query: 111 KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
SFFAP+DGASFHANSFMELNLSRPL+RACEALGY+KPTPIQAACIPLALTGRDICGSAI
Sbjct: 121 TSFFAPSDGASFHANSFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAI 180
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TGSGKTAAF+LPTLERLLYRPKR AIRVLILTP RELA+QVHSMIEK+AQFTDIRCCL+
Sbjct: 181 TGSGKTAAFSLPTLERLLYRPKRDRAIRVLILTPARELAIQVHSMIEKLAQFTDIRCCLI 240
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGLS K QE ALRSMPD+VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA
Sbjct: 241 VGGLSRKEQEAALRSMPDVVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 300
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
EI ELVRLCPKRRQTMLFSAT+TE+V+ELIKLSLTKPLRLSADP+ KRP TLTEEVVR+R
Sbjct: 301 EIRELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKRPKTLTEEVVRLR 360
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RMREVNQEAVLLSLCSKTFTSKVI+FSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL
Sbjct: 361 RMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRL 420
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
+ALELFRKQ VDFLIATDVAARGLDIIGV+TVIN+ACPRDLTSYVHRVGRTARAGREGYA
Sbjct: 421 DALELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYA 480
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI KWS+IIEQMEDQV AIL+EEREER L
Sbjct: 481 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIKKWSEIIEQMEDQVTAILREEREERAL 540
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQ 590
RKAEMEATKAENMI H+EEIF+RPK+TWF+T++EK+L KA KAS+EKG SGNE SAQ
Sbjct: 541 RKAEMEATKAENMIVHQEEIFSRPKKTWFITDREKRLVAKAAKASLEKGNTSGNEAVSAQ 600
Query: 591 QAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDK 632
QAE+ K+K KRKREREK+LPRK+RRKLEAAREMLE+E Q DK
Sbjct: 601 QAEEEKMKXKRKREREKDLPRKKRRKLEAAREMLEEEKQNDK 642
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/669 (70%), Positives = 541/669 (80%), Gaps = 50/669 (7%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPS------------------------ 36
M S F FE SD+E+E ++++ ED EE DV++
Sbjct: 1 MPSSFFFEDASDDELELIRNQ--EDSSEE-DVKEGEAEEHEAGEDEDGEEEYEEEDDDEE 57
Query: 37 ----KRAK----QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDN----- 83
KR + QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI N
Sbjct: 58 EEDEKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEE 117
Query: 84 -----DHSDSEFDQHEDYKPEDED--DFSNAGDT-KSFFAPADGASFHANSFMELNLSRP 135
D SD+E D+ E+Y ED++ ++ T K FF+ DG SFHA++FMELNLSRP
Sbjct: 118 EEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRP 177
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
LLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RPKR+
Sbjct: 178 LLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVF 237
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMPDIVVATPG
Sbjct: 238 ATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPG 297
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
RMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTMLFSAT+TE+
Sbjct: 298 RMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEE 357
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++TF SKVII
Sbjct: 358 VKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVII 417
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
FSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIATDVAARGLD
Sbjct: 418 FSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLD 477
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495
IIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK+ GSKLKS
Sbjct: 478 IIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKS 537
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R++ EQSI KWS+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H++EI+ARPK
Sbjct: 538 RVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPK 597
Query: 556 RTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERR 615
RTWF+TEKEKKL +A+K S G +G E+ SA +AEDLK+KEKRKREREKNLPRK+RR
Sbjct: 598 RTWFMTEKEKKLVAQAEKDSA--GNPAGGELVSADRAEDLKMKEKRKREREKNLPRKKRR 655
Query: 616 KLEAAREML 624
KLEAAREML
Sbjct: 656 KLEAAREML 664
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/669 (70%), Positives = 541/669 (80%), Gaps = 50/669 (7%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPS------------------------ 36
M S F FE SD+E+E ++++ ED EE DV++
Sbjct: 1 MPSSFFFEDASDDELELIRNQ--EDSSEE-DVKEGEAEEHEAGEDEDGEEEYEEEDDDEE 57
Query: 37 ----KRAK----QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDN----- 83
KR + QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI N
Sbjct: 58 EEDEKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEE 117
Query: 84 -----DHSDSEFDQHEDYKPEDED--DFSNAGDT-KSFFAPADGASFHANSFMELNLSRP 135
D SD+E D+ E+Y ED++ ++ T K FF+ DG SFHA++FMELNLSRP
Sbjct: 118 EEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRP 177
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
LLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RPKR+
Sbjct: 178 LLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVF 237
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMPDIVVATPG
Sbjct: 238 ATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPG 297
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
RMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTMLFSAT+TE+
Sbjct: 298 RMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEE 357
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++TF SKVII
Sbjct: 358 VKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVII 417
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
FSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIATDVAARGLD
Sbjct: 418 FSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLD 477
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495
IIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK+ GSKLKS
Sbjct: 478 IIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKS 537
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R++ EQSI KWS+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H++EI+ARPK
Sbjct: 538 RVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPK 597
Query: 556 RTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERR 615
RTWF+TEKEKKL +A+K S G +G E+ SA +AEDLK+KEKRKREREKNLPRK+RR
Sbjct: 598 RTWFMTEKEKKLVAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREKNLPRKKRR 655
Query: 616 KLEAAREML 624
KLEAAREML
Sbjct: 656 KLEAAREML 664
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/673 (69%), Positives = 537/673 (79%), Gaps = 55/673 (8%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRA--------------------- 39
M SGF FE SD+E+E L+++ + + + + E ++
Sbjct: 1 MPSGFFFEDASDDELELLRNQEDSSEEDVEEDEAEEHKSGEDEDGEDNEEDDEEEEEEED 60
Query: 40 --------KQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPI----------- 80
QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI
Sbjct: 61 EKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISIEEEEEEEEE 120
Query: 81 --VDNDHSDSEFDQHEDYKPEDE-------DDFSNAGDTKSFFAPADGASFHANSFMELN 131
+ D SD+E D+ E+Y ED+ +DF+ K FF+ DG SFHA+SFMELN
Sbjct: 121 EEEEEDASDAEPDKQEEYLSEDDGAAEYKPEDFT----PKPFFSTVDGVSFHADSFMELN 176
Query: 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191
LSRPLLRACE LGY KPTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RP
Sbjct: 177 LSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP 236
Query: 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 251
KR+ A RVLILTPTRELAVQ+HSMI+K+AQFTDI+C L+VGGLS + QE LRSMPDIVV
Sbjct: 237 KRVFATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVV 296
Query: 252 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311
ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTMLFSAT
Sbjct: 297 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 356
Query: 312 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371
+TE+V EL+KLSL KPLRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++TF S
Sbjct: 357 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKS 416
Query: 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
KVIIFSGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIATDVAA
Sbjct: 417 KVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAA 476
Query: 432 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491
RGLDIIGVQTVINYACPR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK+ GS
Sbjct: 477 RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGS 536
Query: 492 KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIF 551
KLKSR++ EQSI KWS II++MEDQ +A++ ER+ER LRKAEME KAENM+ H++EI+
Sbjct: 537 KLKSRVIPEQSIVKWSHIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIY 596
Query: 552 ARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPR 611
ARPKRTWF+TEKEKKL +A+K S G SG E+ SA +AED K+KEKRKREREKNLPR
Sbjct: 597 ARPKRTWFMTEKEKKLVAQAEKDSA--GNPSGGELVSADRAEDFKMKEKRKREREKNLPR 654
Query: 612 KERRKLEAAREML 624
K+RRKLEAAREML
Sbjct: 655 KKRRKLEAAREML 667
>gi|357459393|ref|XP_003599977.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355489025|gb|AES70228.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 828
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/729 (67%), Positives = 558/729 (76%), Gaps = 100/729 (13%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVE--------------------KPSKRAK 40
M FIF+PPSDEEIE + + +E E+ E + SK+
Sbjct: 1 MSPSFIFDPPSDEEIELSEHDSDESDSEQSQPESQSGEESDSDSESEQRRKEPRVSKKKT 60
Query: 41 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIV------DNDHSDSEFDQHE 94
QSPWDF YSESV++EH RR TTSVD KI+ +++QRS P+V D+ SDSE D+ E
Sbjct: 61 QSPWDFTQYSESVAEEHARRSTTSVDDKIS-AVRQRSAPVVALPDSDDDRSSDSEADKQE 119
Query: 95 DYKPEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
DY+PE+ED+ NAG+ KSFFAP+ G SF A+SF++LNLSRPLLRACE LGYSKPTPIQA
Sbjct: 120 DYRPEEEDEEDGNAGENKSFFAPSAGTSFSADSFLQLNLSRPLLRACEVLGYSKPTPIQA 179
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
ACIPLALTGRDICGSAITGSGKTAAFALPTLERLL+RPKR+ AIRVLILTPTRELA QV
Sbjct: 180 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVHAIRVLILTPTRELAAQVQ 239
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273
SMI+ ++QFTDIRCCL+VGGLSTK QE ALRS PDIVVATPGRMIDHLRNSMSVDLDDL+
Sbjct: 240 SMIKSLSQFTDIRCCLIVGGLSTKEQEVALRSRPDIVVATPGRMIDHLRNSMSVDLDDLS 299
Query: 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS------------------------ 309
VLILDEADRLLELGFSAEI ELVR+CPK+RQTMLFS
Sbjct: 300 VLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPLRLSAD 359
Query: 310 ------ATLTEDVDELIKLSLTKPL----------------------------RLSADPS 335
A+LTE++D I+L +T PL R D
Sbjct: 360 PLAKRPASLTEELDG-IRLGVT-PLERERESVGVAPIVQKMIENWLRWYWHVERRPVDAV 417
Query: 336 AKRPSTLTEE------------VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383
+R + E VVR+RRMREVNQEAVLL++CSKTFTSKVIIFSGTKQAA
Sbjct: 418 VQREDQIEESQIKRGKEDLEKLVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAA 477
Query: 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443
HRL+I+FGL+ LKAAELHGNLTQAQRL ALE FRKQ VDFL+ATDVAARGLDIIGVQTVI
Sbjct: 478 HRLRIIFGLSGLKAAELHGNLTQAQRLGALEEFRKQQVDFLVATDVAARGLDIIGVQTVI 537
Query: 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
N+ACPRDLTSYVHRVGRTARAGR G AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI
Sbjct: 538 NFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 597
Query: 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEK 563
KWS++IEQMEDQ++ +LQEEREE ILRKAEMEATKAENMIAHK+EIF+RPKRTWFVTEK
Sbjct: 598 LKWSQVIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEK 657
Query: 564 EKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREM 623
EKK++ KA KAS++K GS +++ SAQQAEDLK+KEKRKREREKN+PRK+RRKLEAAREM
Sbjct: 658 EKKISAKAAKASLDKEDGSSHKMVSAQQAEDLKMKEKRKREREKNMPRKKRRKLEAAREM 717
Query: 624 LEDEDQVDK 632
LED++ DK
Sbjct: 718 LEDDEHDDK 726
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/676 (65%), Positives = 529/676 (78%), Gaps = 68/676 (10%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P S ++ E R QSPW+F+ Y+ESV+ EH RR
Sbjct: 1 MDPSFRFDPDSSDD--------------EASGAPARGRLAQSPWEFSLYAESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVPIVDNDHSDSEF------------------------------ 90
RTTS+D KI Q P++ +D S+S+
Sbjct: 47 RTTSIDEKILHLRQGCGKPVL-SDGSESDVSGSGEDDSNEKEIEEESGDEEDEREIEGVG 105
Query: 91 ----------------------DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFM 128
D HE+ ++++ S D +FFA ++GA+FHANSF+
Sbjct: 106 DEEESGDREGGEEGGSELGEEKDAHEEEDTVEQNETSGPVDPSNFFASSEGATFHANSFL 165
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERLL
Sbjct: 166 ELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL 225
Query: 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 248
+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMPD
Sbjct: 226 FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPD 285
Query: 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308
IVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTMLF
Sbjct: 286 IVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLF 345
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+TE++DELIKLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC KT
Sbjct: 346 SATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLKT 405
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELFRKQ VDFLIATD
Sbjct: 406 FKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIATD 465
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK+
Sbjct: 466 VAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKK 525
Query: 489 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 548
AGS+LKSRIVAE+ + + +++IEQ+EDQ++ I++EE+ ER RKAEME KAENMIAHK+
Sbjct: 526 AGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREEKVEREARKAEMEIAKAENMIAHKD 585
Query: 549 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 608
EI++RPKRTWF TE+EKKL V A K S+ +GK S + + SA+QAEDL++KEK++RE EK+
Sbjct: 586 EIYSRPKRTWFATEREKKLLVAAAKESLGQGK-STSGIISAKQAEDLRLKEKKRREHEKD 644
Query: 609 LPRKERRKLEAAREML 624
LPRK+RR+LEA REML
Sbjct: 645 LPRKKRRRLEAQREML 660
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/676 (66%), Positives = 529/676 (78%), Gaps = 68/676 (10%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P S ++ E R QSPW+F+ Y+ESV+ EH RR
Sbjct: 1 MDPSFRFDPDSSDD--------------EASGAPARGRLAQSPWEFSLYAESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVPIVDNDHSDSEF------------------------------ 90
RTTS+D KI Q P++ +D S+S+
Sbjct: 47 RTTSIDEKILHLRQGCGKPVL-SDGSESDVSGSGEDDSNEKEIEEESGDEEDEREIEGVG 105
Query: 91 ----------------------DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFM 128
D HE+ ++++ S D +FFA ++GA+FHANSF+
Sbjct: 106 DEEESGDREGGEEGGSELGEEKDAHEEEDTVEQNETSGPVDPSNFFASSEGATFHANSFL 165
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
ELNLSRPL+RACEALGY KPTPIQAACIPLALTGRDICGSAITGSGKTAAF+LP LERLL
Sbjct: 166 ELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL 225
Query: 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 248
+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTDIRCCL+VGGLSTK+QE ALRSMPD
Sbjct: 226 FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPD 285
Query: 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308
IVVATPGR+IDHLRNS+SV L+DLAV+ILDEADRLLELGFSAEI EL+R+CPKRRQTMLF
Sbjct: 286 IVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTMLF 345
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+TE++DELIKLSL KP+RL ADPS KRP+TLTEEVVRIRR RE NQEAVLL+LC KT
Sbjct: 346 SATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLKT 405
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F VIIFSGTKQ+AHRLKI+FGL+ +KAAELHGNLTQAQRLEALELFRKQ VDFLIATD
Sbjct: 406 FKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIATD 465
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VAARG+DI+GVQTVIN+ACPRD+ +Y+HRVGRTARAGREGYAVTFVTD+DRSLLKAIAK+
Sbjct: 466 VAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKK 525
Query: 489 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 548
AGS+LKSRIVAE+ + + +++IEQ+EDQ++ I++EER ER RKAEME KAENMIAHK+
Sbjct: 526 AGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREERVEREARKAEMEIAKAENMIAHKD 585
Query: 549 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 608
EI++RPKRTWF TE+EKKL V A K S+ +GK S + V SA+QAEDL++KEK++RE EK+
Sbjct: 586 EIYSRPKRTWFATEREKKLLVAAAKESLGQGK-STSGVISAKQAEDLRLKEKKRREHEKD 644
Query: 609 LPRKERRKLEAAREML 624
LPRK+RR+LEA REML
Sbjct: 645 LPRKKRRRLEAQREML 660
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/523 (79%), Positives = 478/523 (91%), Gaps = 1/523 (0%)
Query: 102 DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT 161
D S D FFA ++GASFHANSF+ELNLSRPLLRACEALGY KPTPIQAACIPLALT
Sbjct: 201 DKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALT 260
Query: 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
GRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQ
Sbjct: 261 GRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQ 320
Query: 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
FTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLA+LILDEAD
Sbjct: 321 FTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD 380
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
RLLELGFSAEI EL+R+CP+RRQTMLFSAT+TE+++EL+ LSL KP+RL ADPS KRP+T
Sbjct: 381 RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPAT 440
Query: 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401
LTEEVVRIRR RE NQEAVLL+LC KTF KVIIFSGTK +AHRLKI+FGL+ +KAAELH
Sbjct: 441 LTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELH 500
Query: 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 461
GNLTQAQRLEALELF+KQ VDFLIATDVAARG+DI+GV+TVIN++CPRD +Y+HRVGRT
Sbjct: 501 GNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRT 560
Query: 462 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
ARAGREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+
Sbjct: 561 ARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTII 620
Query: 522 QEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
QEEREERILRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL KA K S +GK
Sbjct: 621 QEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK- 679
Query: 582 SGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML 624
S + V SAQQAEDL++KEK++REREKNLPRK+RR+LEA REML
Sbjct: 680 SNSGVISAQQAEDLRLKEKKRREREKNLPRKKRRRLEAEREML 722
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 37 KRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSL 73
++ QSPW+F++Y+ESV+ EH RRRTTS+D KI+++L
Sbjct: 56 RKPAQSPWEFSSYAESVAAEHARRRTTSIDEKISQAL 92
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/523 (79%), Positives = 478/523 (91%), Gaps = 1/523 (0%)
Query: 102 DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT 161
D S D FFA ++GASFHANSF+ELNLSRPLLRACEALGY KPTPIQAACIPLALT
Sbjct: 171 DKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALT 230
Query: 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
GRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQ
Sbjct: 231 GRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQ 290
Query: 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
FTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLA+LILDEAD
Sbjct: 291 FTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD 350
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
RLLELGFSAEI EL+R+CP+RRQTMLFSAT+TE+++EL+ LSL KP+RL ADPS KRP+T
Sbjct: 351 RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPAT 410
Query: 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401
LTEEVVRIRR RE NQEAVLL+LC KTF KVIIFSGTK +AHRLKI+FGL+ +KAAELH
Sbjct: 411 LTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELH 470
Query: 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 461
GNLTQAQRLEALELF+KQ VDFLIATDVAARG+DI+GV+TVIN++CPRD +Y+HRVGRT
Sbjct: 471 GNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRT 530
Query: 462 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
ARAGREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+
Sbjct: 531 ARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTII 590
Query: 522 QEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
QEEREERILRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL KA K S +GK
Sbjct: 591 QEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK- 649
Query: 582 SGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML 624
S + V SAQQAEDL++KEK++REREKNLPRK+RR+LEA REML
Sbjct: 650 SNSGVISAQQAEDLRLKEKKRREREKNLPRKKRRRLEAEREML 692
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 37 KRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSL 73
++ QSPW+F++Y+ESV+ EH RRRTTS+D KI+++L
Sbjct: 26 RKPAQSPWEFSSYAESVAAEHARRRTTSIDEKISQAL 62
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/537 (79%), Positives = 474/537 (88%), Gaps = 9/537 (1%)
Query: 88 SEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSK 147
SE D+ +YKPED K FF+ DG SFHA++FMELNLSRPLLRACE LGY K
Sbjct: 75 SEDDEAAEYKPED-------ATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKK 127
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RPKR+ A RVLILTPTRE
Sbjct: 128 PTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRE 187
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMPDIVVATPGRMIDHLRNSMSV
Sbjct: 188 LAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSV 247
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
DLDDLAVLILDEADRLL+ GF+ EI ELVRLCPKRRQTMLFSAT+TE+V EL+KLSL KP
Sbjct: 248 DLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKP 307
Query: 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
LRLSADPSA+RP LTEEVVRIRR RE NQEAVLLSLC++TF SKVIIFSGTKQAAHRLK
Sbjct: 308 LRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLK 367
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
ILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIATDVAARGLDIIGVQTVINYAC
Sbjct: 368 ILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYAC 427
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
PR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK+ GSKLKSR++ EQSI KWS
Sbjct: 428 PREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWS 487
Query: 508 KIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
+II++MEDQ +A++ ER+ER LRKAEME KAENM+ H++EI+ARPKRTWF+TEKEKKL
Sbjct: 488 QIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFMTEKEKKL 547
Query: 568 AVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML 624
+A+K S G +G E+ SA +AEDLK+KEKRKREREKNLPRK+RRKLEAAREML
Sbjct: 548 VAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREKNLPRKKRRKLEAAREML 602
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/523 (79%), Positives = 477/523 (91%), Gaps = 1/523 (0%)
Query: 102 DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT 161
D S D FFA ++GASFHANSF+ELNLSRPLLRACEALGY KPTPIQAACIPLALT
Sbjct: 171 DKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALT 230
Query: 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
GRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA VHSMIEK+AQ
Sbjct: 231 GRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQ 290
Query: 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
FTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLA+LILDEAD
Sbjct: 291 FTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEAD 350
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
RLLELGFSAEI EL+R+CP+RRQTMLFSAT+TE+++EL+ LSL KP+RL ADPS KRP+T
Sbjct: 351 RLLELGFSAEIQELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPAT 410
Query: 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401
LTEEVVRIRR RE NQEAVLL+LC KTF KVIIFSGTK +AHRLKI+FGL+ +KAAELH
Sbjct: 411 LTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELH 470
Query: 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 461
GNLTQAQRLEALELF+KQ VDFLIATDVAARG+DI+GV+TVIN++CPRD +Y+HRVGRT
Sbjct: 471 GNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRT 530
Query: 462 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
ARAGREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + + +K+IE++EDQ++ I+
Sbjct: 531 ARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTII 590
Query: 522 QEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
QEEREERILRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL KA K S +GK
Sbjct: 591 QEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK- 649
Query: 582 SGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML 624
S + V SAQQAEDL++KEK++REREKNLPRK+RR+LEA REML
Sbjct: 650 SNSGVISAQQAEDLRLKEKKRREREKNLPRKKRRRLEAEREML 692
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 37 KRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQ 74
++ QSPW+F++Y+ESV+ EH RRRTTS+D KI+++L+
Sbjct: 26 RKPAQSPWEFSSYAESVAAEHARRRTTSIDEKISQALR 63
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/529 (77%), Positives = 478/529 (90%), Gaps = 1/529 (0%)
Query: 100 DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
D++D S D +FF+ +D ASFHANSF+ELNLSRPL+RACEALGY KPTPIQAACIPLA
Sbjct: 142 DQNDTSGPVDPSNFFSSSDRASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLA 201
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219
LTGRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA Q+HSM+EK+
Sbjct: 202 LTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQIHSMVEKL 261
Query: 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279
AQFTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLAV+ILDE
Sbjct: 262 AQFTDIRCCLIVGGLSTKIQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDE 321
Query: 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP 339
ADRLLELGFSAEI EL+R+CPKRRQTMLFSAT+TE++DEL+KLSL KP+RL ADPS KRP
Sbjct: 322 ADRLLELGFSAEIQELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRP 381
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
+TLTEEVVRIRR RE NQEAVLL+LC KTF VIIFSGTKQ+AHRLKI+FGL+ +KAAE
Sbjct: 382 ATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAE 441
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
LHGNLTQAQRLEALELF+K+ VDFLIATDVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVG
Sbjct: 442 LHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVG 501
Query: 460 RTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAA 519
RTARAGREGYAVTFVTD+DR LLKAIAK+AGS+LKSRIVAE+ + + +++IEQ+E Q++
Sbjct: 502 RTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIVAEKPVAECARLIEQLEGQISI 561
Query: 520 ILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
I++EER ER RKAEME KAENMIAHK+EI++RPKRTWF TE+EKKL A K S++ G
Sbjct: 562 IIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWFATEREKKLLAAAAKESLDHG 621
Query: 580 KGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDED 628
K + V SA++AEDL++KEKR+RE EKNLPRK+RR+LEA REMLEDED
Sbjct: 622 KSTSG-VISAKKAEDLRLKEKRRREHEKNLPRKKRRRLEAQREMLEDED 669
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P S ++ E P QSPW+F++Y+ESV+ EH RR
Sbjct: 1 MDPSFRFDPDSSDD--------------EAAGAPPRGGPVQSPWEFSSYAESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVPIVDND 84
RTTS+D KI+ Q+R P+V +D
Sbjct: 47 RTTSIDEKISLLRQERGNPVVPDD 70
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/529 (77%), Positives = 479/529 (90%), Gaps = 1/529 (0%)
Query: 100 DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
D++D S D +FF+ +D ASFHANSF+ELNLSRPL+RACEALGY KPTPIQAACIPLA
Sbjct: 158 DQNDTSGPVDPSNFFSSSDRASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLA 217
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219
LTGRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA Q+HSM+EK+
Sbjct: 218 LTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQIHSMVEKL 277
Query: 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279
AQFTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLAV+ILDE
Sbjct: 278 AQFTDIRCCLIVGGLSTKIQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDE 337
Query: 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP 339
ADRLLELGFSAEI EL+R+CPKRRQTMLFSAT+TE++DEL+KLSL KP+RL ADPS KRP
Sbjct: 338 ADRLLELGFSAEIQELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRP 397
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
+TLTEEVVRIRR RE NQEAVLL+LC KTF VIIFSGTKQ+AHRLKI+FGL+ +KAAE
Sbjct: 398 ATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAE 457
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
LHGNLTQAQRLEALELF+K+ VDFLIATDVAARG+DI+GVQTVIN+ACPRD+ +Y+HRVG
Sbjct: 458 LHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVG 517
Query: 460 RTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAA 519
RTARAGREGYAVTFVTD+DR LLKAIAK+AGS+LKSRIVAE+ + + +++IEQ+E Q++
Sbjct: 518 RTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIVAEKPVAECARLIEQLEGQISI 577
Query: 520 ILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
I++EER ER RKAEME KAENMIAHK+EI++RPKRTWF TE+EKKL A K S++ G
Sbjct: 578 IIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWFATEREKKLLAAAAKESLDHG 637
Query: 580 KGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDED 628
K S + V SA++AEDL++KEKR+RE EKNLPRK+RR+LEA REMLEDED
Sbjct: 638 K-STSGVISAKKAEDLRLKEKRRREHEKNLPRKKRRRLEAQREMLEDED 685
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P S ++ E P QSPW+F++Y+ESV+ EH RR
Sbjct: 1 MDPSFRFDPDSSDD--------------EAAGAPPRGGPVQSPWEFSSYAESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVPIVDND 84
RTTS+D KI+ Q+R P+V +D
Sbjct: 47 RTTSIDEKISLLRQERGNPVVPDD 70
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/517 (78%), Positives = 468/517 (90%), Gaps = 1/517 (0%)
Query: 105 SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
S+ D FF+ ++GASF ANSF+ELN+SRPLLRACEALGY KPTPIQAACIPLALTGRD
Sbjct: 155 SSTPDPSKFFSSSEGASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRD 214
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
ICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTD
Sbjct: 215 ICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTD 274
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
IRCCL+VGGL TK+QE ALRS PDIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLL
Sbjct: 275 IRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLL 334
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
ELGFS EI+EL+R+CPKRRQTMLFSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTE
Sbjct: 335 ELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTE 394
Query: 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
EVVRIRR RE NQEAVLL+LC KTF +VIIFSGTK +AHRLKI+FGL+ +KAAELHGNL
Sbjct: 395 EVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNL 454
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQAQRLEALELF+KQ VD LIATD+AARG+DI+GV+TVIN+ACPRD+ +Y+HRVGRTARA
Sbjct: 455 TQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARA 514
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
GREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + +K+I+Q+E+Q++ I+QEE
Sbjct: 515 GREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVADCAKLIDQLENQISNIIQEE 574
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 584
REE LRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL KA K S+ + K S
Sbjct: 575 REEMALRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESLGQVKSSSG 634
Query: 585 EVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAR 621
V SAQ AEDL++KEKR+REREKNLPRK+RRKLEA R
Sbjct: 635 -VVSAQDAEDLRLKEKRRREREKNLPRKKRRKLEAQR 670
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P ++ E ++ QSPW+F++Y+ESV+ EH RR
Sbjct: 1 MDPDFRFDPDGSDD--------------EAAAASARRKPAQSPWEFSSYTESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVP 79
RTTS+D KI+++L+ R P
Sbjct: 47 RTTSIDEKISQALRGRRNP 65
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/517 (78%), Positives = 468/517 (90%), Gaps = 1/517 (0%)
Query: 105 SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
S+ D FF+ ++GASF ANSF+ELN+SRPLLRACEALGY KPTPIQAACIPLALTGRD
Sbjct: 145 SSTPDPSKFFSSSEGASFKANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRD 204
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
ICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA QVHSMIEK+AQFTD
Sbjct: 205 ICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTD 264
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
IRCCL+VGGL TK+QE ALRS PDIVVATPGR+IDHLRNS+SV L+DLA+LILDEADRLL
Sbjct: 265 IRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLL 324
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
ELGFS EI+EL+R+CPKRRQTMLFSAT+TE++DEL+KLSL KP+RL ADPS KRP+TLTE
Sbjct: 325 ELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTE 384
Query: 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
EVVRIRR RE NQEAVLL+LC KTF +VIIFSGTK +AHRLKI+FGL+ +KAAELHGNL
Sbjct: 385 EVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNL 444
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQAQRLEALELF+KQ VD LIATD+AARG+DI+GV+TVIN+ACPRD+ +Y+HRVGRTARA
Sbjct: 445 TQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARA 504
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
GREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + +K+I+Q+E+Q++ I+QEE
Sbjct: 505 GREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVADCAKLIDQLENQISNIIQEE 564
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 584
REE LRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL KA K S+ + K S
Sbjct: 565 REEMALRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESLGQVKSSSG 624
Query: 585 EVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAR 621
V SAQ AEDL++KEKR+REREKNLPRK+RRKLEA R
Sbjct: 625 -VVSAQDAEDLRLKEKRRREREKNLPRKKRRKLEAQR 660
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MD F F+P ++ E ++ QSPW+F++Y+ESV+ EH RR
Sbjct: 1 MDPDFRFDPDGSDD--------------EAAAASARRKPAQSPWEFSSYTESVAAEHARR 46
Query: 61 RTTSVDFKITKSLQQRSVP 79
RTTS+D KI+++L+ R P
Sbjct: 47 RTTSIDEKISQALRGRRNP 65
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/605 (64%), Positives = 476/605 (78%), Gaps = 18/605 (2%)
Query: 41 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPI---VDNDHSDSEFDQHEDYK 97
QSPW+F+ Y+++ EH R TTS+D KI + L V +ND E D+ +D
Sbjct: 20 QSPWEFSGYAKASEQEHRERNTTSIDHKIKQRLNAEDVDQDGEEENDDEQREEDRGQDST 79
Query: 98 PEDEDD----------FSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSK 147
EDE + + + FF+ GASF+A+SF+ELN+SRPLLRAC+ALGY +
Sbjct: 80 DEDEKEQLDHSQRKKSLDSKKEKPQFFSSNHGASFNASSFIELNVSRPLLRACDALGYRQ 139
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PTPIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERLL+RP+RIPAIRVLI+TPTRE
Sbjct: 140 PTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLLFRPRRIPAIRVLIITPTRE 199
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LAVQ+HSMIEK+AQFTDIRC LVVGGLS+K+QE ALR+ PDIVVATPGRMIDHLRN+ SV
Sbjct: 200 LAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRTHPDIVVATPGRMIDHLRNTQSV 259
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
L++LA+L+LDEADRLLELGF EIHELV+LCP RRQTMLFSAT+T++V ELIKLSL P
Sbjct: 260 GLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTMLFSATMTDEVSELIKLSLKSP 319
Query: 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
+RLSADPS +RPSTLTEEV+RIR E ++EA++LSLCS++ SK IIFSGTK AHRLK
Sbjct: 320 VRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLCSRSLKSKTIIFSGTKVEAHRLK 379
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
ILFGL+ LK+AELHGNLTQAQRLEALE FRKQ VDFLIATDVAARGLDIIGV++VIN C
Sbjct: 380 ILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVINLEC 439
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
P+++ +YVHRVGRTARAGR G +VT +T+ DR LLKA+AKRAGSKL+ R+VA SI W
Sbjct: 440 PKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKRVVAATSIASWR 499
Query: 508 KIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
+ IE+ME+ + ILQ+EREE+ LRKAEMEA KA+NM+ ++ EIFARPK+TWF ++++K
Sbjct: 500 ERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYEAEIFARPKKTWFQSQQDKTR 559
Query: 568 AVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE-- 625
K AS G + S + E+L+ KEKRK E EK LPRK+RR+LEAARE E
Sbjct: 560 IAKVSPASY--GPALKKKAISVDEGEELQKKEKRKAETEKALPRKKRRRLEAARETAEEG 617
Query: 626 -DEDQ 629
DED+
Sbjct: 618 ADEDE 622
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/610 (64%), Positives = 480/610 (78%), Gaps = 24/610 (3%)
Query: 41 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPI---VDNDHSDSEFDQHEDYK 97
QSPW+F+ Y+++ EH R TTS+D KI + L V +N E D+ +D
Sbjct: 20 QSPWEFSGYAKASEQEHRERNTTSIDHKIKQRLNAEDVDQDGEEENHDEQGEKDRGQDST 79
Query: 98 PEDE-DDFSNAGDTKS-------FFAPADGASFHANSFMELNLSRPLLRACEALGYSKPT 149
EDE + ++ KS FF+ GASF+A+SF+ELN+SRPLLRAC+ALGY +PT
Sbjct: 80 DEDEKEQLDHSQRKKSLDSKKEKFFSSNHGASFNASSFIELNVSRPLLRACDALGYRQPT 139
Query: 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209
PIQAACIPLAL GRDICGSA+TGSGKTAAFALP LERLL+RP+RIPAIRVLI+TPTRELA
Sbjct: 140 PIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLLFRPRRIPAIRVLIITPTRELA 199
Query: 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL 269
VQ+HSMIEK+AQFTDIRCCLVVGGLS+K+QE ALR+ PDIVVATPGRMIDHLRN+ SV L
Sbjct: 200 VQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRTHPDIVVATPGRMIDHLRNTQSVGL 259
Query: 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLR 329
++LA+L+LDEADRLLELGF EIHELV+LCP RRQTMLFSAT+T++V ELIKLSL P+R
Sbjct: 260 EELAILVLDEADRLLELGFREEIHELVKLCPSRRQTMLFSATMTDEVSELIKLSLKSPVR 319
Query: 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389
LSADPS +RPSTLTEEV+RIR E ++EA++LSLCS++ SK IIFSGTK AHRLKIL
Sbjct: 320 LSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLCSRSLKSKTIIFSGTKVEAHRLKIL 379
Query: 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449
FGL+ LK+AELHGNLTQAQRLEALE FRKQ VDFLIATDVAARGLDIIGV++VIN CP+
Sbjct: 380 FGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVINLECPK 439
Query: 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKI 509
++ +YVHRVGRTARAGR G +VT +T+ DR LLKA+AKRAGSKL+ R+VA SI W +
Sbjct: 440 EIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKRVVAATSIASWRER 499
Query: 510 IEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 569
IE+ME+ + ILQ+EREE+ LRKAEMEA KA+NM+ ++ EIFARPK+TWF ++++K
Sbjct: 500 IEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYEAEIFARPKKTWFQSQQDKTRIA 559
Query: 570 KADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML----- 624
K AS + S + E+L+ KEKRK E EK LPRK+RR+LEAARE
Sbjct: 560 KVSPASY--------KAISVDEGEELQKKEKRKAETEKALPRKKRRRLEAARETAEEGAN 611
Query: 625 EDEDQVDKLQ 634
EDE+Q K++
Sbjct: 612 EDENQHRKVR 621
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/525 (73%), Positives = 448/525 (85%), Gaps = 35/525 (6%)
Query: 100 DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
+++D S D FFA ++GASFHANSF+ELNLSRPL+RACEALGY KPTPIQAACIPLA
Sbjct: 160 EQNDTSGPVDPSKFFASSEGASFHANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLA 219
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219
LTGRDICGSAITGSGKTAAF+LP LERLL+RPKR+PAIRVLILTPTRELA QVHSMIEK+
Sbjct: 220 LTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKL 279
Query: 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279
AQFTDIRCCL+VGGLSTK+QE ALRSMPDIVVATPGR+IDHLRNS+SV L+DLAV+ILDE
Sbjct: 280 AQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDE 339
Query: 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP 339
ADRLLELGFSAEI EL+R+CPKRRQTMLFSAT+TE++DELIKLSL KP+RL ADPS KRP
Sbjct: 340 ADRLLELGFSAEIQELIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRP 399
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
+TLTEEVVRIRR RE NQEAVLL+LC KTF VIIFSGTKQ+AHRLKI+FGL+ +KAAE
Sbjct: 400 ATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAE 459
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
LHGNLTQAQRLEALELF+KQ VDFLIATDVAARG+DI+GV+TVIN+ACPRD+ +Y+HRVG
Sbjct: 460 LHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFACPRDVKTYLHRVG 519
Query: 460 RTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAA 519
RTARAGREGYAVTFVTD+DRSLLKAIAK+AGS+LKSRIVAE+ + + +++IEQ+E Q++
Sbjct: 520 RTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAQLIEQLEGQISI 579
Query: 520 ILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
I++EER ER RKAEME K S+++G
Sbjct: 580 IIREERVEREARKAEMEIAKE----------------------------------SLDQG 605
Query: 580 KGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREML 624
K S + V SA+QAEDL++KEK++RE EKNLPRK+RR+LEA REML
Sbjct: 606 K-STSGVISAKQAEDLRLKEKKRREHEKNLPRKKRRRLEAQREML 649
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 41 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPED 100
QSPW+F++Y+ESV+ EH RRRTTS+D KI+ Q R P++ +D ED +D
Sbjct: 27 QSPWEFSSYAESVAAEHARRRTTSIDEKISHLRQGRGKPVLSDDSESDVSGSGEDDSSDD 86
Query: 101 E 101
E
Sbjct: 87 E 87
>gi|2245018|emb|CAB10438.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268413|emb|CAB78705.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 683
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/698 (59%), Positives = 485/698 (69%), Gaps = 114/698 (16%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPS------------------------ 36
M S F FE SD+E+E ++++ ED EE DV++
Sbjct: 1 MPSSFFFEDASDDELELIRNQ--EDSSEE-DVKEGEAEEHEAGEDEDGEEEYEEEDDDEE 57
Query: 37 ----KRAK----QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDN----- 83
KR + QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI N
Sbjct: 58 EEDEKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEE 117
Query: 84 -----DHSDSEFDQHEDYKPEDED--DFSNAGDT-KSFFAPADGASFHANSFMELNLSRP 135
D SD+E D+ E+Y ED++ ++ T K FF+ DG SFHA++FMELNLSRP
Sbjct: 118 EEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRP 177
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK-------------------- 175
LLRACE LGY KPTPIQ IP RD+C SAITGSGK
Sbjct: 178 LLRACETLGYKKPTPIQVQFIPQEW--RDLCASAITGSGKVSTRLMVLCNTEILFRYLTN 235
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFALPTLERLL+RPKR+ A RVLILTPTRELAVQ+HSMI+ +AQFTDI+C L+VGGLS
Sbjct: 236 TAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLS 295
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
+ QE LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL+ GF+ EI EL
Sbjct: 296 VREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITEL 355
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 355
VRLCPKRRQTMLFSAT+TE+V EL+KLSL KPLRLSADPSA+RP LTEE +R
Sbjct: 356 VRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEYLR------- 408
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE---- 411
+ C+ SGTKQAAHRLKILFGLA LKAAELHGNLTQAQRL+
Sbjct: 409 ---EFFVPSCA----------SGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNL 455
Query: 412 ------ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
+LELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPR++ SYVHRVGRTARAG
Sbjct: 456 GTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAG 515
Query: 466 REGYAVTFVTDNDRSLLKAI-----------AKRAGSKLKSRIVAEQSITKWSKIIEQME 514
REGYAVTFVTD+DRSLLK I AK+ GSKLKSR++ EQSI KWS+II++ME
Sbjct: 516 REGYAVTFVTDSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKWSQIIDEME 575
Query: 515 DQVAAILQEER-EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
DQ +A++ ER + + AENM+ H++EI+ARPKRTWF+TEKEKKL +A+K
Sbjct: 576 DQYSAVISAERFHSHSSKNYGIPGELAENMLEHRDEIYARPKRTWFMTEKEKKLVAQAEK 635
Query: 574 ASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPR 611
S G +G E+ SA +AEDLK+KEKRKRERE L R
Sbjct: 636 DS--AGNPAGGELVSADRAEDLKMKEKRKREREVCLSR 671
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/613 (62%), Positives = 472/613 (76%), Gaps = 23/613 (3%)
Query: 39 AKQSPWDFAAYSESVSDEHFRRRTTSVDFKITK-----SLQQRSVPI------------- 80
A QSPW+F++Y+ + + ++D KI++ + +R +
Sbjct: 20 AVQSPWEFSSYTADENGHGTEWKVNTIDQKISQVRSSMNGYKRGLGSESEDEEDEDAEDD 79
Query: 81 ----VDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
V+N + + D+ E + ++ + SFF+ + GASF A SF ELNLSRPL
Sbjct: 80 DNGEVENVDMEGDSDEGESGDDDSDEVDEEDNEASSFFSSSAGASFSAKSFGELNLSRPL 139
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
+RACE LGY +PTPIQAACIPLALTGRDICGSA+TGSGKT AFALP LERLLYRP+RIPA
Sbjct: 140 IRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLERLLYRPRRIPA 199
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
IR LILTPTRELAVQVHSM++K+AQFTD+ +VVGGLS+K+QE ALR+ PDIVVATPGR
Sbjct: 200 IRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRARPDIVVATPGR 259
Query: 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
M+DHL+NS+SV L+DL++L+LDEADRLLELGF+ E+HELVR CPKRRQTMLFSAT+TE+V
Sbjct: 260 MLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTMLFSATMTEEV 319
Query: 317 DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIF 376
LI LSL P+RLSADPS KRP +L+EEVV+IR E ++EAVLL+LC++TF KVIIF
Sbjct: 320 SNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALCTRTFKEKVIIF 379
Query: 377 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436
SG K AHRLKILFGLA LKAAELHGNLTQA RL+ALE FRKQ VDFLIATDVAARGLDI
Sbjct: 380 SGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLIATDVAARGLDI 439
Query: 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496
+GV+TVIN+ CP D+T YVHRVGRTARAGR+G AVTFVT+ +RSLLKAIAK+AGS+L++R
Sbjct: 440 VGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIAKKAGSQLQNR 499
Query: 497 IVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
VA SI W IE+MED V ++Q ER E+ LRKAEME KA+NM+ H++EIF+RPKR
Sbjct: 500 QVAPTSIYNWRSKIEEMEDGVREVMQAERYEKALRKAEMEVNKAQNMMDHEKEIFSRPKR 559
Query: 557 TWFVTEKEKKLAVKADKASIE-KGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERR 615
WF++ KEKK + A KA E KG+ + + S ++A++ K K+KRKR+REKN+ RK+RR
Sbjct: 560 EWFLSTKEKKTTIAAAKARKEGKGEKAPAAMISVEEADEAKRKDKRKRDREKNMTRKQRR 619
Query: 616 KLEAAREMLEDED 628
KLEA RE ED D
Sbjct: 620 KLEAEREDAEDAD 632
>gi|302142686|emb|CBI19889.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/341 (86%), Positives = 319/341 (93%)
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353
E VRLCPKRRQTMLFSAT+TE+VDEL+KLS+TKP+RL+ADPS KRP+TLTEEVVRIRRMR
Sbjct: 437 EFVRLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMR 496
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
EVNQEAVLL+LCSKTFT+K IIFSGTKQAAHRLKILFGLA KAAELHGNLTQ QRL+AL
Sbjct: 497 EVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDAL 556
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
ELFRKQ VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF
Sbjct: 557 ELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 616
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
VTDNDRSLLK+I KRAGSKL+SRIVAEQSI KWS +IEQMEDQVAAILQEEREERILRKA
Sbjct: 617 VTDNDRSLLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKA 676
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAE 593
EMEATKAENMIAHK++I++RPKRTWF TEKEKK KA K S+EK GSGN V SAQQAE
Sbjct: 677 EMEATKAENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAE 736
Query: 594 DLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQ 634
DLK+KEKRKREREKNLPRK+RRKLEAARE LEDE+Q+ KL+
Sbjct: 737 DLKMKEKRKREREKNLPRKKRRKLEAARERLEDENQIHKLK 777
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/301 (77%), Positives = 266/301 (88%), Gaps = 5/301 (1%)
Query: 1 MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR 60
MDS F+FE PSDEE E E EE++ E + E ++ A QSPWDFA+YSE+V++EH RR
Sbjct: 1 MDSSFVFEVPSDEEPEYEPDEDEEEE--EGEGEGAAQTASQSPWDFASYSETVAEEHARR 58
Query: 61 RTTSVDFKITKSLQQRSVPIVD-NDHSDSEFDQHEDYKPEDEDDFSN-AGDTKSFFAPAD 118
TTSVDFKI+K+L+QR +PI + +D S+SE D EDY PED D+ ++ GD KSFFAPAD
Sbjct: 59 STTSVDFKISKALEQRRLPIPNQDDSSESESDHQEDYTPEDADEAASVGGDRKSFFAPAD 118
Query: 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
GASFHANSF+ELNLSRPLLRACEALGY+KPTPIQAACIP+ALTGRDICGSAITGSGKTAA
Sbjct: 119 GASFHANSFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAA 178
Query: 179 FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
F+LPTLERLL+RPKR+ AIRVL+LTPTRELAVQVHSM+EK+AQFTDIRCCL+VGGLS+KM
Sbjct: 179 FSLPTLERLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKM 238
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QETALRSMPD+VVATPGRMIDHLRNSMSVDL+DLAVLILDEADRLLELGF+AEI EL R
Sbjct: 239 QETALRSMPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIREL-RC 297
Query: 299 C 299
C
Sbjct: 298 C 298
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 288/474 (60%), Positives = 361/474 (76%), Gaps = 13/474 (2%)
Query: 106 NAGDTKSFFA-PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
N G SF++ +G F ++SF +LNLSRPLL+A EALGY PTPIQAACIPLAL GRD
Sbjct: 154 NGGKAGSFYSDTPEGTKFSSSSFADLNLSRPLLKAVEALGYKTPTPIQAACIPLALAGRD 213
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
ICGSA+TGSGKTAAFALP LERLL+RP+ + A VL+LTPTRELAVQ+HSMIEK+AQFTD
Sbjct: 214 ICGSAVTGSGKTAAFALPFLERLLHRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTD 273
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
+ L+VGGLS +Q LR +P++VVATPGR+IDHLRNS SV L+DLAVL+LDEADRLL
Sbjct: 274 VTVALIVGGLSLSVQAATLRKLPEVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLL 333
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
E+GF E+ E+VR PK+RQTMLFSAT ++ V +L+ LSL +P+RL+AD + P LT+
Sbjct: 334 EMGFRDEVMEVVRCAPKKRQTMLFSATFSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQ 393
Query: 345 EVVRIRR-MREVNQEAVLLSLCSKTFTS-KVIIFSGTKQAAHRLKILFGLAAL-KAAELH 401
E+VR++ +EAV ++LCS++F+S + I+F TKQ AHRLKILFGLA L AAELH
Sbjct: 394 EIVRLKGPAAAATKEAVCVALCSRSFSSGRTIVFCSTKQRAHRLKILFGLAKLPPAAELH 453
Query: 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 461
GN++Q RLE+LE FR+ +L+ATDVAARGLDI GV+ V+NY PR L +Y+HR+GRT
Sbjct: 454 GNMSQTARLESLESFRRGDTAYLLATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRT 513
Query: 462 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSK---------LKSRIVAEQSITKWSKIIEQ 512
ARAG G AVT V D DR LLK + +R G L+ R+V Q++ +W IE+
Sbjct: 514 ARAGAAGVAVTLVEDGDRPLLKELTRRVGGAGGGGGGGVTLRQRLVPPQAVAQWQGRIER 573
Query: 513 MEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
ME VAAIL EER+E LRKAEMEA KA NM+ H+EEI ARPKRTWFV++++KK
Sbjct: 574 MESDVAAILAEERQEADLRKAEMEANKASNMLEHEEEIMARPKRTWFVSDRQKK 627
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/459 (60%), Positives = 348/459 (75%), Gaps = 2/459 (0%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
+F A +F ELNLSRPL++AC ALGY+ PTPIQAA +PLALTGRDICG A+TGSGKTAAF
Sbjct: 146 TFSAANFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFM 205
Query: 181 LPTLERLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LER+L+R PK + A VL+L PTRELAVQVH M E++AQFT +R LVVGGLS +Q
Sbjct: 206 LPCLERMLHRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQ 265
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
T+LRS P++VVATPGR+IDH+RN+ SV L+DLA L+LDEADRLLE+GF EI E+VR C
Sbjct: 266 ATSLRSRPEVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHC 325
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PKRRQTMLFSATLT V+EL + S+ P RLSAD P TLTEEV+R+R +EA
Sbjct: 326 PKRRQTMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEA 385
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
LL++ ++TFT + IIFS TKQ AHRLKI+ G+ LKA ELHG+LTQ QRL ALE FR
Sbjct: 386 HLLAIVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTG 445
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ATDVAARGLDI GV V++Y PR L SY+HRVGRTARAGR+G A+TF+ ++DR
Sbjct: 446 EATHMVATDVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDR 505
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
L+KA++KR GSKL +R + + + IE M + + + EER E+ L +AEMEA K
Sbjct: 506 KLIKAVSKR-GSKLVARSLPTHVVEDFHAKIEGMGEAIKEVEMEERAEKHLARAEMEAIK 564
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
AEN++ H++EI +RP++TWF +E+EKKL KA + E+
Sbjct: 565 AENLMEHQKEIHSRPQKTWFQSEREKKLGQKASLKAAER 603
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 293/524 (55%), Positives = 364/524 (69%), Gaps = 13/524 (2%)
Query: 98 PEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
PED+ F+ A + A+F A SF +LNLSR L+RAC ALGY PTPIQAA +P
Sbjct: 151 PEDDGVFTEREKKNKKGAATEDATFSAESFNDLNLSRQLIRACTALGYDVPTPIQAAVVP 210
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA-IRVLILTPTRELAVQVHSMI 216
LALTGRDICG A+TGSGKTAAF LP LER+L+R R A VL+L PTRELAVQVH M
Sbjct: 211 LALTGRDICGRAVTGSGKTAAFMLPLLERMLHRGARAAAATHVLVLVPTRELAVQVHQMT 270
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
++AQFT IR LVVGGLS Q LR+ P+IVVATPGR+IDH+RN+ SV L+DLA L+
Sbjct: 271 MRLAQFTSIRAALVVGGLSANTQAAELRTRPEIVVATPGRLIDHVRNTHSVGLEDLAALV 330
Query: 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
LDEADRLLE+GF EI E+VR CP RRQTMLFSATLT V EL + S+ P RLSAD
Sbjct: 331 LDEADRLLEMGFLEEIREIVRHCPTRRQTMLFSATLTSGVQELAEFSMKHPARLSADQIG 390
Query: 337 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
P TLTEEV+R+R +EA L++L ++TFT K I+FS TKQ AHRLKI+ GLA +
Sbjct: 391 TTPGTLTEEVLRLRPGAASMKEAHLMALVNRTFTKKSIVFSRTKQQAHRLKIVMGLAGIV 450
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
AAELHG+L+Q QRL ALE FR L+ATDVAARGLDI GV VI+Y PR L SY+H
Sbjct: 451 AAELHGDLSQTQRLAALESFRVGEASHLVATDVAARGLDIAGVDAVISYDAPRTLASYLH 510
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQ 516
RVGRTARAG+ G A+TF+ ++DR L+KA++KR GSKL +R + + +W IE M DQ
Sbjct: 511 RVGRTARAGKRGTALTFMEESDRKLVKAVSKR-GSKLVARSLPNHVVEEWHAKIEAMADQ 569
Query: 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 576
+ + EER E+ L +AEMEA KAEN++ H +EI ARP +TWF +E++KK KA +
Sbjct: 570 IKEVEYEERAEKHLNRAEMEAIKAENLMTHSKEIHARPAKTWFQSERQKKTLNKASLKAS 629
Query: 577 EKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAA 620
E+ + ++L+ EK KRE K + +R + EAA
Sbjct: 630 ER-----------EDVDELEDVEKVKRETGKKSKKTKRAEKEAA 662
>gi|384249200|gb|EIE22682.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 662
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/465 (61%), Positives = 353/465 (75%), Gaps = 4/465 (0%)
Query: 109 DTKSFFAPA-DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
D + F+A DG F A++F +L+LSRPLL+AC ALGY PTPIQAACIPLAL GRDICG
Sbjct: 100 DAEDFYAQTPDGTKFSASAFSDLHLSRPLLKACTALGYINPTPIQAACIPLALAGRDICG 159
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
SAITGSGKTAAFALP LERLL+R +RI A L+LTPTRELAVQVHSMI +AQFTDIR
Sbjct: 160 SAITGSGKTAAFALPLLERLLFRNRRIAATYGLVLTPTRELAVQVHSMITNLAQFTDIRI 219
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
LVVGGLS ++Q LR+ P++VVATPGR+IDHLRN+ SV L+DL L+LDEADRLL++G
Sbjct: 220 ALVVGGLSLQVQSATLRTSPEVVVATPGRLIDHLRNTQSVGLEDLQALVLDEADRLLQMG 279
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
FS EI E++RL P++RQT+LFSAT+TE+V +L LSL +P+RL+AD + P +LT+E+V
Sbjct: 280 FSEEIKEVLRLTPRKRQTLLFSATMTEEVRDLAALSLQRPVRLAADAAGAAPRSLTQEIV 339
Query: 348 RIR-RMREVNQEAVLLSLCSKTF-TSKVIIFSGTKQAAHRLKILFGLAAL-KAAELHGNL 404
R + +E LL+LC+++F + I+F TK +AHR KILFGLA L AAELHGN+
Sbjct: 340 RFKGAAGPAAREGTLLALCARSFRLGRTIVFFSTKHSAHRAKILFGLAGLPPAAELHGNM 399
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQA RLE+LE FRK FL+ATDVAARGLDI+GV VINY P L++Y+HR+GRTARA
Sbjct: 400 TQAARLESLEKFRKGEAAFLLATDVAARGLDILGVDAVINYDAPPALSAYLHRIGRTARA 459
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
GR G AVTF D+ RSLLK + K+ G+KL R V + + +W++ I + +A I E
Sbjct: 460 GRAGRAVTFADDSTRSLLKDVVKKTGAKLLIRSVQPEIVAQWTQRIHSLGRDIARIDLAE 519
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 569
REE LRKAEMEA KAENM+AH+ EI ARP RTWF T KEK +V
Sbjct: 520 REEMELRKAEMEAQKAENMVAHEAEIAARPPRTWFQTAKEKVASV 564
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/457 (54%), Positives = 347/457 (75%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FF ++ + A SF++L+LSR LL+A LGY +PTP+Q+ IP+AL G+D+C SA T
Sbjct: 180 AFFEKSETEGYQAESFLDLHLSRALLKAVANLGYDRPTPVQSQAIPIALQGKDVCASATT 239
Query: 172 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
GSGKTA+F LP LERL++R KRI A RV+ILTPTRELA+Q HS+IEK+A+FTDI CLVV
Sbjct: 240 GSGKTASFVLPILERLIHRDKRIMATRVVILTPTRELAIQCHSVIEKLAKFTDITACLVV 299
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGLS K+QE ALR PDIVVATPGR+IDHLRN+ S L+ + +L+LDEADRLL LGF+ E
Sbjct: 300 GGLSNKVQEAALRRHPDIVVATPGRIIDHLRNAQSFTLETVDILVLDEADRLLSLGFADE 359
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
+ ++++ CP RQT+LFSAT+TE+VD L LSL +P+R+ DP+ + S + +E ++I+
Sbjct: 360 LEQIIKFCPPNRQTLLFSATMTEEVDRLASLSLNRPVRVRLDPNMRVASGIQQEFIKIKE 419
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
RE +++A+LL+LC+++F +V+IF K+ AHRLK++FGLA LKAAELHGNL+Q QRLE
Sbjct: 420 AREFDRDAMLLALCTRSFKKRVLIFFRAKKEAHRLKVIFGLAGLKAAELHGNLSQNQRLE 479
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
ALE FR + D+L+ATD+AARGLDI+G++T+INY R + SY+HRVGRTAR G G +V
Sbjct: 480 ALEKFRDGNFDYLLATDLAARGLDILGIETIINYNMARTVESYIHRVGRTARWGHSGKSV 539
Query: 472 TFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
TF+++ DR + K I K K+ +R++ + I +W + I+ M+ ++ I E EE+ LR
Sbjct: 540 TFISEQDRKVFKEIMKSTNQKVSNRVIPPKIIDQWREKIDSMKGDISQIFAMEYEEKQLR 599
Query: 532 KAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
+MEA+K +NMI H +EI +RP RTWF T++++ LA
Sbjct: 600 LTQMEASKTQNMIEHHDEIMSRPPRTWFQTKEQRDLA 636
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/451 (59%), Positives = 338/451 (74%), Gaps = 2/451 (0%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
+F A +F EL+LSRPL RACEALGY KPTPIQAA IP+A+TGRD+CG A+TGSGKTAAF
Sbjct: 144 TFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFM 203
Query: 181 LPTLERLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LER+L+R P+ A VL+L PTRELAVQVH M E +AQFT IR LVVGGLS +Q
Sbjct: 204 LPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQ 263
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
ALR+ P+IVVATPGR+IDH+RN+ S L+DLA LILDEADRLLE+GF EI E+VR C
Sbjct: 264 AAALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQC 323
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK+RQT+LFSATLT V+ L LS+ P RLSAD P L EEV++++ + +EA
Sbjct: 324 PKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEA 383
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+++ S+++ IIFS TKQ AHRLKI+ GL+ +KA ELHG++TQ QRL AL+ FR
Sbjct: 384 FLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTG 443
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V LIATDVAARGLDI V VI++ P+ L SY+HRVGRTARAG++G A+TF+ ++DR
Sbjct: 444 TVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDR 503
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
L+K IAKR G+ LK+RIV + +W K IE ME+Q+ I EER ER L+KAEMEA K
Sbjct: 504 KLVKTIAKR-GANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANK 562
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
A N++ H EI +RP +TWF +E++K+ A K
Sbjct: 563 ASNILEHAAEIKSRPAKTWFQSERDKRNAQK 593
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/451 (59%), Positives = 338/451 (74%), Gaps = 2/451 (0%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
+F A +F EL+LSRPL RACEALGY KPTPIQAA IP+A+TGRD+CG A+TGSGKTAAF
Sbjct: 144 TFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFM 203
Query: 181 LPTLERLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LER+L+R P+ A VL+L PTRELAVQVH M E +AQFT IR LVVGGLS +Q
Sbjct: 204 LPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQ 263
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
ALR+ P+IVVATPGR+IDH+RN+ S L+DLA LILDEADRLLE+GF EI E+VR C
Sbjct: 264 AAALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQC 323
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK+RQT+LFSATLT V+ L LS+ P RLSAD P L EEV++++ + +EA
Sbjct: 324 PKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEA 383
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+++ S+++ IIFS TKQ AHRLKI+ GL+ +KA ELHG++TQ QRL AL+ FR
Sbjct: 384 FLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTG 443
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V LIATDVAARGLDI V VI++ P+ L SY+HRVGRTARAG++G A+TF+ ++DR
Sbjct: 444 TVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDR 503
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
L+K IAKR G+ LK+RIV + +W K IE ME+Q+ I EER ER L+KAEMEA K
Sbjct: 504 KLVKTIAKR-GANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANK 562
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
A N++ H EI +RP +TWF +E++K+ A K
Sbjct: 563 ASNILEHAAEIKSRPAKTWFQSERDKRNAQK 593
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/463 (60%), Positives = 353/463 (76%), Gaps = 8/463 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+G F + SF +LN+SRPLL+A EALGY PTPIQAACIPLAL GRDICGSA+TGSGKTA
Sbjct: 142 EGTKFSSASFADLNISRPLLKAVEALGYKSPTPIQAACIPLALAGRDICGSAVTGSGKTA 201
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP LERLL+RP+ + A VL+LTPTRELAVQ+HSMIEK+AQFTDI L+VGGLS +
Sbjct: 202 AFALPFLERLLHRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLSLQ 261
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
+Q LR P++VVATPGR+IDHLRNS SV L+DLAVL+LDEADRLLE+GF E+ E+VR
Sbjct: 262 VQAITLRQSPEVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFREEVAEVVR 321
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MREVN 356
P++RQTMLFSAT + V +L+ LSL +P+RL+AD + P LT+E+VR++
Sbjct: 322 AAPRKRQTMLFSATFNDQVRDLVALSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAAT 381
Query: 357 QEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAAL-KAAELHGNLTQAQRLEAL 413
+EAV L+LC+++F + I+F TK AHRLKILFGLA L AAELHGN++Q RLE+L
Sbjct: 382 KEAVCLALCARSFGDRGRTIVFCSTKTKAHRLKILFGLAGLPPAAELHGNMSQTARLESL 441
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
E FR+ FL+ATDVAARGLDI GV+ V+NY P L +Y+HR+GRTARAG G AVT
Sbjct: 442 ESFRRGDTAFLLATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTL 501
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
V D DR LLK + K+ G ++R+V ++ +W +E++E V AIL EER+E LRKA
Sbjct: 502 VEDGDRGLLKELGKKVG---RARLVPAAAVVQWQSRVERLERDVRAILAEERDEADLRKA 558
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK-LAVKADKAS 575
EMEA KA NM+ H+ EI +RPKRTWFVTEK+K+ LA ++ +A+
Sbjct: 559 EMEANKAVNMMEHESEIMSRPKRTWFVTEKQKRELAARSAQAA 601
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/479 (54%), Positives = 352/479 (73%), Gaps = 14/479 (2%)
Query: 111 KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
+ +F A S +SF EL+LSRPLL+A +LG+ KPT IQ+ IP+AL G+D+C S+
Sbjct: 99 REYFDDAPVQSAETSSFQELHLSRPLLKAVSSLGFIKPTVIQSMVIPVALQGKDVCASSR 158
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TGSGKTAAFALP LERLLYRP+R+ A RVL+LTPTRELAVQ H+M+EK+A FTDIRC +V
Sbjct: 159 TGSGKTAAFALPILERLLYRPRRVAATRVLVLTPTRELAVQAHAMMEKLAAFTDIRCYIV 218
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
+GG+ ++QET LR PD+VVATPGRMIDHLRN+ + + L +L+LDEADRLLE+GF+
Sbjct: 219 IGGVKNQLQETELRKKPDVVVATPGRMIDHLRNAPGIGFEALEILVLDEADRLLEMGFTE 278
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR------------ 338
E+ ELV++CP++RQTMLFSAT+T DVD+L SL +P+R++AD S +
Sbjct: 279 EVQELVKMCPQQRQTMLFSATMTHDVDKLAAFSLRRPVRVTADGSIRTDETQGTLNKVAV 338
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
PS+L +E VRIR+ E ++EA+LL LC++TF + I+F K+ AHRL+I+FGL L+
Sbjct: 339 PSSLLQEFVRIRKEHEKDREAILLCLCTRTFHKRTIVFCREKRRAHRLRIIFGLLGLRVE 398
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQAQRLEALE F+++ DFL+ATD+A RGLDI GV V+N PR+L YVHRV
Sbjct: 399 ELHGNLTQAQRLEALENFKEEKSDFLLATDLAGRGLDIKGVDVVVNLEVPRNLAEYVHRV 458
Query: 459 GRTARAGREGYAVTFVTDNDR--SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQ 516
GRTARAGR+G AVT D+ R S+LK + + A +K R+V +I IE++E
Sbjct: 459 GRTARAGRKGRAVTLADDSQRTKSMLKEVVRSAPDVVKRRVVPPDAIAAMRSRIEELEAD 518
Query: 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 575
VAA+++EE ER +R A+ME KA N++ H+E+I ARPK+TWF + +EK A +++ +S
Sbjct: 519 VAAVMEEEAVERQMRIADMEGEKARNLVEHEEDILARPKKTWFQSREEKLQARESNPSS 577
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/453 (56%), Positives = 334/453 (73%)
Query: 114 FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS 173
FA + A +F +L LSRP++RA +G+ KPTPIQ IP+ALTG+DIC SA TGS
Sbjct: 120 FAAQEFAKTKFETFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGS 179
Query: 174 GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 233
GKTAAF LP LERL +R +R+ + RV+I+ P RELA Q SM+E++A+FTDI C L VGG
Sbjct: 180 GKTAAFLLPILERLQFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGG 239
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293
L K QE LR+ PD+VV TPGRMIDHLRNS SV +DDL +L+LDEADRLLELGF+ E+
Sbjct: 240 LPLKAQEAELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVL 299
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353
ELVR+CP +RQTMLFSAT+T VD+LI LS+ +P+R+S DP L +E VRIR R
Sbjct: 300 ELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNR 359
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
E ++EA+LL+LC++TF S I+F TK AHR+ I+FGLA +KAAELHGNL Q +RLEAL
Sbjct: 360 EDDREAILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEAL 419
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
+ FR VD L+ TD+AARG+D+ GV VINY P+D+T+YVHRVGRTARAGR G AVT
Sbjct: 420 QKFRDGTVDVLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTL 479
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
+++ R ++K +++ +KSR V + I +W IE M + V ++ EE E+ +R+A
Sbjct: 480 TSESRRLVMKQVSRHCQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLEKRMREA 539
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
E EAT+A N++ H++EI ARP RTWF++EKEKK
Sbjct: 540 EKEATRATNLLKHRDEINARPARTWFMSEKEKK 572
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/447 (58%), Positives = 339/447 (75%), Gaps = 2/447 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +NLSRP+L+ +LG+ KPTPIQ+ IP+AL G+DICG A TGSGKTAAF +P LE
Sbjct: 217 SFTSMNLSRPILKGVTSLGFVKPTPIQSQTIPIALMGKDICGGAATGSGKTAAFVIPILE 276
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYRP++ P+ RVLIL PTRELA QVHS K A +TDI CL VGGLS K QE L+
Sbjct: 277 RLLYRPRQTPSTRVLILCPTRELAAQVHSAAVKFAAYTDITFCLCVGGLSLKTQEQELKL 336
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+VVATPGR+IDH+RN+ LD +L++DEADR+LE GF+ E+ E+V+ CPK RQT
Sbjct: 337 KPDVVVATPGRLIDHVRNTSGFHLDACEILVMDEADRMLEDGFADELGEIVKSCPKSRQT 396
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++VD+LI++SL P+RL D S + S L +E VRIR+ RE ++ AVLL+LC
Sbjct: 397 MLFSATMTDNVDQLIRMSLHNPVRLFVDRSNQAASRLIQEFVRIRQAREADRSAVLLALC 456
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K+F +KVIIF +K AAH++KILFGL L AAELHGNLTQ QRLEALE FR VD+L+
Sbjct: 457 KKSFKNKVIIFFRSKAAAHQMKILFGLMGLNAAELHGNLTQEQRLEALEQFRDNQVDYLL 516
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI G++TVINY P Y+HRVGRTARAGR G +VT V ++DR +LK
Sbjct: 517 ATDLAARGLDIKGIETVINYNMPTQFAQYLHRVGRTARAGRNGRSVTLVGESDRKMLKMA 576
Query: 486 AK--RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 543
K AGS++K+R+V +++ K+ +E+++ Q+ IL+EE+EE+ LR AEM+ ++ENM
Sbjct: 577 IKSSSAGSQVKNRVVPNEAVQKYKLKVEKLQRQIKEILEEEKEEKALRNAEMQIKRSENM 636
Query: 544 IAHKEEIFARPKRTWFVTEKEKKLAVK 570
I H++EI +RP RTWF +EKEKK A K
Sbjct: 637 IKHQDEIMSRPARTWFQSEKEKKNAKK 663
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/453 (55%), Positives = 332/453 (73%)
Query: 114 FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS 173
FA + A +F +L LSRP++RA +G+ KPTPIQ IP+ALTG+DIC SA TGS
Sbjct: 138 FAAEEFAKTRFETFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGS 197
Query: 174 GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 233
GKTAAF LP LERL +R +R+ + R +I+ P RELA Q SM E++A+FTDI C L VGG
Sbjct: 198 GKTAAFLLPILERLQFRSRRVQSTRTMIICPVRELATQCQSMFEQLARFTDITCSLAVGG 257
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293
L K QE LR+ PD+VV TPGRMIDHLRNS SV +DDL +L+LDEADRLLELGF+ E+
Sbjct: 258 LPLKAQEAELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVL 317
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353
ELVR+CP +RQTMLFSAT+T VD+LI LS+ +P+R+S DP L +E VRIR R
Sbjct: 318 ELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNR 377
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
E ++EA+LL+LC++TF + I+F TK AHR+ I+FGLA +KAAELHGNL Q +RLEAL
Sbjct: 378 EDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQRERLEAL 437
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
+ FR VD L+ TD+AARG+D+ GV VINY P+D+T+YVHRVGRTARAGR G AVT
Sbjct: 438 QKFRDGTVDILLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTL 497
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
+++ R ++K +++ +KSR V + I +W IE M+ V ++ EE E+ +R+A
Sbjct: 498 TSESRRLVMKQVSRHCKGFVKSRAVPDPVIAQWKARIESMQGDVKLVMHEETLEKRMREA 557
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
E EAT+A N++ H++EI +RP RTWF++EKEKK
Sbjct: 558 EKEATRATNLLKHRDEINSRPARTWFMSEKEKK 590
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/528 (50%), Positives = 379/528 (71%), Gaps = 20/528 (3%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FFA DG S ++F+++NLSRP+L+A +LG++KPTPIQA+ IP+AL G+DI G+A+T
Sbjct: 161 AFFAEEDGGSTTCDTFLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVT 220
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P LERLLYR KR A R LIL PTRELAVQ + + +++ TDI+ CL
Sbjct: 221 GSGKTAAFMIPMLERLLYREKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCL 280
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+VGGLS K QE ALR PD+V+ATPGR+IDH+RNS+ +LD L +L+LDEADR+L GF+
Sbjct: 281 LVGGLSLKAQEAALRQRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFA 340
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CPK RQTMLFSAT+T+ VDELIK+SL KP+RL DP L +E VRI
Sbjct: 341 DELTEIIKACPKSRQTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRI 400
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E ++ A+L++LC +T+ KVIIF +K+ AH+++I+F L +K AELHG+L+Q QR
Sbjct: 401 R--KESDRPAMLVALCKQTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQR 458
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L+AL+ FR+ VD+L+ATD+A+RGLDI GV+TV+NY P + Y+HRVGRTARAGR+G
Sbjct: 459 LQALQSFREGSVDYLMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGK 518
Query: 470 AVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR LLKA K A +++ R++ + K++ +E ++ ++A +++EE+EE
Sbjct: 519 SVTLVGEADRKLLKAAIKHAAGEDQVRQRVLDTTVVQKYADKLEGLKGEIAEVMREEKEE 578
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 587
+ LR+AEME TK ENM+ H++EIF+RP RTWF T KEK+ A + K + +GK
Sbjct: 579 KQLRQAEMELTKGENMMKHQDEIFSRPARTWFQTNKEKEKAKEISK-QLHEGK------- 630
Query: 588 SAQQAEDLKIKE-KRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQ 634
SA + + K E K R++ L RK +R R+M +ED+ +Q
Sbjct: 631 SAAKGKQSKADESKPSRDKYSGLSRKAKR-----RKMAMEEDKESGVQ 673
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/556 (48%), Positives = 377/556 (67%), Gaps = 29/556 (5%)
Query: 83 NDHSDSEFDQHEDYKP--EDEDDFSNAGDT------------KSFFAPADGASFHANSFM 128
++ DS ++ ED+ DEDD + + ++FF +D + SF+
Sbjct: 122 DEEGDSSGERSEDFGSASSDEDDEGQSDEVSDLETQAEKDRKRAFFEDSDTTTPAHASFL 181
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
+NLSRPL +A LG++KPTPIQ A IP+AL G+DI G+A+TGSGKTAAF +P LERLL
Sbjct: 182 TMNLSRPLQKALTTLGFNKPTPIQVAAIPVALIGKDIVGNAVTGSGKTAAFVIPMLERLL 241
Query: 189 YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
YR K A R LIL PTREL VQ + + +K+A +TD R LVVGGLS K QE ALR+
Sbjct: 242 YREKGKSAAATRCLILVPTRELGVQCYEVAQKLAAYTDARIALVVGGLSLKSQEAALRTR 301
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PD+V+ATPGR++DH+ NS S +LD L +L+LDEADR+L GF+ E+ E+++ CPK RQTM
Sbjct: 302 PDVVIATPGRLVDHIHNSPSFNLDALDILVLDEADRMLSEGFADELSEIIKACPKSRQTM 361
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R +E + ++L++LC
Sbjct: 362 LFSATMTDSVDELVKMSLNKPVRLFVDPRRTTARGLVQEFVRVRAEKETERSSLLVALCQ 421
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFTS VI+F +K+ AH+++I+F + +K ELHG+LTQ QRL+AL+LFR V+FL+A
Sbjct: 422 RTFTSGVIVFFRSKKLAHQMRIIFRMLDMKCEELHGDLTQEQRLQALQLFRDGQVNFLMA 481
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TD+A+RGLDI G++TVINY P Y+HRVGRTARAG+ G ++T V + DR +LK++
Sbjct: 482 TDLASRGLDIKGIETVINYDMPNQAAQYLHRVGRTARAGKTGRSLTLVGEADRKMLKSVI 541
Query: 487 KR--AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
K +G ++ R+V +S+ KWSK I ++D+++ +LQEE+EE+ +R+AEME K +NMI
Sbjct: 542 KHSASGENIRHRVVPAESVAKWSKRIADLKDEISMVLQEEKEEKQIRQAEMELKKGKNMI 601
Query: 545 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 604
H++EIF+RP RTWF +EKEK A + K E + + V +A KR
Sbjct: 602 DHEKEIFSRPARTWFQSEKEKNKAAASSKQEHENANKTDSGVDAAAP----------KRG 651
Query: 605 REKNLPRK-ERRKLEA 619
+ L R+ +RRKL A
Sbjct: 652 KFAGLSRRAKRRKLAA 667
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/511 (52%), Positives = 364/511 (71%), Gaps = 10/511 (1%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
++F D A+ ++ +F +NLSRPLL+A LG+ KPTPIQAA IP+AL G+D+ G A+
Sbjct: 205 AYFDTPDAATSTSDVTFQSMNLSRPLLKALANLGFEKPTPIQAAAIPVALLGKDVVGGAV 264
Query: 171 TGSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
TGSGKTAAF +P LERLL+R K RV+IL PTRELAVQ H++ +I FTD+R
Sbjct: 265 TGSGKTAAFVIPILERLLFRDRGKAAATTRVVILCPTRELAVQCHAVATRIGSFTDVRFS 324
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288
LVVGGLS K QE LR+ PD+V+ATPGR+IDHLRNS S LD L VLI+DEADR+LE GF
Sbjct: 325 LVVGGLSLKGQEAELRTRPDVVIATPGRLIDHLRNSPSFSLDMLDVLIMDEADRMLEEGF 384
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348
+AE+ E++ CPK+RQTMLFSAT+T+ VDELI++ L KP+RL DP S LT+E VR
Sbjct: 385 AAELGEIISACPKQRQTMLFSATMTDSVDELIRMGLNKPVRLFVDPRKSTASGLTQEFVR 444
Query: 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
+R RE ++ A+L++LC +TF ++ IIF +K AH+++I+FGL +KA ELHGNLTQ Q
Sbjct: 445 VRDNREDDRPALLMTLCKRTFRTRCIIFFRSKAFAHQMRIVFGLLGMKAGELHGNLTQEQ 504
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
RL AL+ F+ VDFL+ATD+A+RGLDI G++TVINY P + Y+HRVGRTARAG +G
Sbjct: 505 RLRALQQFKDGDVDFLLATDLASRGLDIRGIETVINYDMPGQIAQYLHRVGRTARAGSKG 564
Query: 469 YAVTFVTDNDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR +LKA+ K + ++K R+V +++ K + ++ + D+V A+L+EE+EE
Sbjct: 565 RSVTLVGEADRKMLKAVIKHSPADQVKHRLVPAEAVAKMAAKLKGLHDEVDAVLKEEKEE 624
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 587
+ LR+AEM+ K EN+I H+E IF+RP RTWF TEKEKK + + K K G +
Sbjct: 625 KALRQAEMQLKKGENLIEHEEAIFSRPARTWFQTEKEKK-----NTQELSKEKYVGGFAS 679
Query: 588 SAQQAEDLKIKEKRKREREKNLPRK-ERRKL 617
+ + +D KR++ L RK +RRKL
Sbjct: 680 NVKDNKDENKSAGPKRDKLSGLSRKAKRRKL 710
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/546 (49%), Positives = 376/546 (68%), Gaps = 23/546 (4%)
Query: 99 EDEDDFSNAGDTK------------SFFAPADGASFHANSFMELNLSRPLLRACEALGYS 146
EDED S++GD ++F G + SF+ +NLSRP++++ LG++
Sbjct: 145 EDEDAASSSGDDSEEETEAQKERKAAYFDSEQGPAEAHTSFLSMNLSRPIIKSITTLGFT 204
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR--PKRIPAIRVLILTP 204
PTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P LERL+YR K+ A R LIL P
Sbjct: 205 TPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGKKAAATRCLILAP 264
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELAVQ + + K+A TDIR LVVGGLS K QET LR+ PD+V+ATPGR+IDHLRNS
Sbjct: 265 TRELAVQCYEVGSKLAAHTDIRFALVVGGLSVKAQETNLRTRPDVVIATPGRLIDHLRNS 324
Query: 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
+ LD L +L+LDEADR+LE GFS E+ E++ CP RQTMLFSAT+T+ VDEL+++SL
Sbjct: 325 PTFTLDALDILVLDEADRMLEDGFSDELTEIITSCPTSRQTMLFSATMTDSVDELVRMSL 384
Query: 325 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384
KP+RL DP L +E VR+R +E + A+L++LC ++F ++ IIF +K+ AH
Sbjct: 385 NKPVRLFVDPKRSTARGLLQEFVRVRAGKETERSALLVALCKRSFKARAIIFYRSKKLAH 444
Query: 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444
+++I+F L +K ELHG+LTQ QRL+AL+ FR HVD+L+ATD+A+RGLDI G++TVIN
Sbjct: 445 QMRIMFSLLGMKCDELHGDLTQEQRLKALQQFRDGHVDYLMATDLASRGLDIKGIETVIN 504
Query: 445 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQS 502
Y P L+ Y+HRVGRTARAG++G +VT V + DR LLKA K + S +++ R V +
Sbjct: 505 YDMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADRKLLKAAIKHSSSEDQVRHRQVPTEV 564
Query: 503 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE 562
+ KW++ + ++++++ ILQEE+EE+ +R+AEME K +NMI H+ EIF+RP RTWF T
Sbjct: 565 LAKWAQKLAGLKEEISEILQEEKEEKHIRQAEMELKKGQNMIEHEAEIFSRPARTWFQTG 624
Query: 563 KEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAARE 622
KEK A K+ E G +G + + Q A + K KR++ L R+ +R+ A
Sbjct: 625 KEKAQAEALSKSQYEAGFDAGQKGKAKQAAAE----PKPKRDKFAGLTRRAKRRKMA--- 677
Query: 623 MLEDED 628
M +DED
Sbjct: 678 MEDDED 683
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/468 (52%), Positives = 346/468 (73%), Gaps = 4/468 (0%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FFA G +SFM +NLSRP+L+A +L ++KPTPIQAA IP+AL G+DI G+A+T
Sbjct: 181 AFFASDAGPVEQHSSFMSMNLSRPVLKAIASLNFTKPTPIQAATIPVALLGKDIVGNAVT 240
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P +ERL+YR K+ A R ++L PTREL VQ + + K+A TDIR CL
Sbjct: 241 GSGKTAAFMIPMIERLMYRERGKKAAATRCMVLVPTRELGVQCYEVGTKLAAHTDIRFCL 300
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VVGGLS K QE ALR+ PDI++ATPGR+IDH+RN+ + LD L +L+LDEADR+L GF
Sbjct: 301 VVGGLSLKSQEVALRTRPDIIIATPGRLIDHIRNTPTFTLDTLDILVLDEADRMLSEGFQ 360
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CP RQTMLFSAT+T+ VDEL+++SL +P+RL DP L +E VR+
Sbjct: 361 DELAEIIKSCPVSRQTMLFSATMTDSVDELVRMSLNQPVRLFVDPKRTTARGLLQEFVRV 420
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E + A+L+SLC +TF V+IF +K+ AH+++I+FGL +KA+ELHG+LTQ QR
Sbjct: 421 RASKEDERSALLVSLCKRTFKGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQEQR 480
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L+AL+ FR+ VD+L+ATD+A+RGLDI G+ TVINY P + Y+HRVGRTARAG++G
Sbjct: 481 LQALQAFREGSVDYLMATDLASRGLDIKGIDTVINYDMPGQVAQYLHRVGRTARAGKKGR 540
Query: 470 AVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR +LKA K A +++ R V +++ KWSK + +++D++A +LQEE+EE
Sbjct: 541 SVTLVGEADRKILKAAIKHASGEDQVRHRHVPPEAVQKWSKKLGELKDEIAGVLQEEKEE 600
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 575
+ LR+AEME K +N+I H+EEI +RP RTWF +EKEK+ + + K S
Sbjct: 601 KQLRQAEMELRKGQNLIEHEEEIKSRPARTWFQSEKEKQKSKEVSKES 648
>gi|152013519|sp|A4QYM6.1|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
gi|440472865|gb|ELQ41697.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae Y34]
gi|440482949|gb|ELQ63394.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae P131]
Length = 790
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/525 (49%), Positives = 357/525 (68%), Gaps = 23/525 (4%)
Query: 107 AGDTKSFFA---PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
A K FFA P + SF ++LSRP+LR ++G++KPTPIQ+ IP+AL G+
Sbjct: 234 AAKMKEFFAADEPKSDTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGK 293
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+ G A+TGSGKTAAF +P LERLLYRPK++P RV+IL PTRELA+Q H++ K+A T
Sbjct: 294 DVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHT 353
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
DI+ CL VGGLS K+QE+ LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+
Sbjct: 354 DIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRM 413
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L KP+RL D K TLT
Sbjct: 414 LEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLT 473
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VR+R RE + L+ LC +T +VIIF K+ AH +I+FGL L AELHG+
Sbjct: 474 QEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGS 533
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q QR++++E FR V FL+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTAR
Sbjct: 534 MSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTAR 593
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A+T + DR ++KA K G+K+ SRI+ W I+++ED+V A+
Sbjct: 594 AGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDELEDEVEAV 653
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGK 580
++EE+EE++L +A+ME K ENMI ++++I ARPKRTWF TEK+KK A +A +A++
Sbjct: 654 MREEKEEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFETEKDKKAAREAGRAAL---- 709
Query: 581 GSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
N V A +K+ KNL K+++KL+A E E
Sbjct: 710 ---NGVREAL----------KKKHGGKNLSNKDKKKLDAMAEAKE 741
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/525 (49%), Positives = 357/525 (68%), Gaps = 23/525 (4%)
Query: 107 AGDTKSFFA---PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
A K FFA P + SF ++LSRP+LR ++G++KPTPIQ+ IP+AL G+
Sbjct: 243 AAKMKEFFAADEPKSDTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGK 302
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+ G A+TGSGKTAAF +P LERLLYRPK++P RV+IL PTRELA+Q H++ K+A T
Sbjct: 303 DVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHT 362
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
DI+ CL VGGLS K+QE+ LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+
Sbjct: 363 DIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRM 422
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L KP+RL D K TLT
Sbjct: 423 LEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLT 482
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VR+R RE + L+ LC +T +VIIF K+ AH +I+FGL L AELHG+
Sbjct: 483 QEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGS 542
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q QR++++E FR V FL+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTAR
Sbjct: 543 MSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTAR 602
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A+T + DR ++KA K G+K+ SRI+ W I+++ED+V A+
Sbjct: 603 AGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKIDELEDEVEAV 662
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGK 580
++EE+EE++L +A+ME K ENMI ++++I ARPKRTWF TEK+KK A +A +A++
Sbjct: 663 MREEKEEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFETEKDKKAAREAGRAAL---- 718
Query: 581 GSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
N V A +K+ KNL K+++KL+A E E
Sbjct: 719 ---NGVREAL----------KKKHGGKNLSNKDKKKLDAMAEAKE 750
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/502 (51%), Positives = 356/502 (70%), Gaps = 10/502 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF+ +NLSRP++++ ALG++KPTPIQAA IP+AL G+DI G+A+TGSGKTAAF +P L
Sbjct: 193 TSFLSMNLSRPIIKSITALGFNKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFIIPML 252
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
ERLLYR K+ A R L+L PTREL VQ + K+A TDIR LVVGGLS K QE
Sbjct: 253 ERLLYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTDIRFSLVVGGLSVKTQEAT 312
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR+ PD+V+ATPGR+IDHLRNS + LD L +L+LDEADR+L GF+ E+ E+++ CP
Sbjct: 313 LRTRPDVVIATPGRLIDHLRNSPAFTLDALDILVLDEADRMLSDGFADELTEIIKSCPMS 372
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQTMLFSAT+T+ VDEL+++SL KP+RL DP S L +E VR+R +E + A+L+
Sbjct: 373 RQTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTASGLVQEFVRVRAGKESERSALLV 432
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+LC +TF S+ IIF +K+ AH+++I+F L +KA ELHG+L+Q QRL+AL+ FR VD
Sbjct: 433 TLCKRTFKSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQEQRLKALQQFRDGAVD 492
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FL+ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG++G +VT V + DR +L
Sbjct: 493 FLMATDLASRGLDIKGIETVINYDMPSQLAQYLHRVGRTARAGKKGRSVTLVGEADRKML 552
Query: 483 KAIAKRAGSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
KA K A ++ ++ R + +++ KWS ++ M+ ++A +LQEE+EE+ LR+AEME K
Sbjct: 553 KASIKHAMAEDSVRHRQIPPEAVAKWSAKLDDMKKEIAEVLQEEKEEKQLRQAEMEVKKG 612
Query: 541 ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEK 600
+NMI H+ EIF+RP RTWF T KEK A K E G S ++ ++ ++K
Sbjct: 613 QNMIEHEAEIFSRPARTWFQTGKEKAKAEALSKEQYETG------THSTKKGKEKAPEDK 666
Query: 601 RKREREKNLPRKERRKLEAARE 622
KRE+ L RK +R+ A E
Sbjct: 667 PKREKYAGLSRKAKRRKMAMEE 688
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/518 (51%), Positives = 362/518 (69%), Gaps = 9/518 (1%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FFA G S ++F+ +NLSRP+L+A +L + KPTPIQAA IP+AL G+D+ G+A+T
Sbjct: 185 AFFASDTGPSETHSTFLSMNLSRPILKAITSLSFHKPTPIQAATIPVALLGKDVVGNAVT 244
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P LERLLYR K+ A R L+L PTREL VQ + K+A +TDIR CL
Sbjct: 245 GSGKTAAFIIPMLERLLYRDRAKKSAATRCLVLVPTRELGVQCFEVGTKLATYTDIRFCL 304
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VGGLS K QE ALRS PD+V+ATPGR+IDHLRNS S +LD L +L+LDEADR+L GF+
Sbjct: 305 AVGGLSVKSQEAALRSKPDVVIATPGRLIDHLRNSPSFNLDALDILVLDEADRMLSDGFA 364
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CPK RQTMLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+
Sbjct: 365 DELAEIIKSCPKSRQTMLFSATMTDSVDELVKMSLDKPVRLFVDPKRSTAKGLIQEFVRV 424
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E + A+L++LC +TF S VIIF +K+ AH+++I+F L +K AELHG+LTQ QR
Sbjct: 425 RAGKESERSAILVALCKRTFKSGVIIFFRSKKLAHQMRIVFSLLYMKCAELHGDLTQEQR 484
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L+AL+ FR VDFL+ATD+A+RGLDI GV VINY P L Y+HRVGRTARAG++G
Sbjct: 485 LKALQQFRDGSVDFLMATDLASRGLDIKGVDIVINYDMPGQLAQYLHRVGRTARAGKKGR 544
Query: 470 AVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR +LKA K +++ RIV ++I+KWS+ +E ++ ++A +L+EE+EE
Sbjct: 545 SVTLVGEADRKMLKAAIKHGAGDDQVRHRIVPSEAISKWSEKLELLKKEIAEVLEEEKEE 604
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 587
+ +R+AEME K ENM+ H EEI++RP RTWF + K+K A K E G S
Sbjct: 605 KQMRQAEMELKKGENMMEHSEEIYSRPARTWFQSAKDKAKAEAVSKQQYETGFPSTATAK 664
Query: 588 SAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
++ ED K KR++ L R+ +R+ A E E
Sbjct: 665 VKRKDED-----KPKRDKFSGLTRRAKRRKMAMEEETE 697
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/546 (48%), Positives = 371/546 (67%), Gaps = 14/546 (2%)
Query: 99 EDEDDFSNAGDTKS-FFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
E E+D D K+ FFA S +SF+ +NLSRP++++ LG++ PTPIQAA IP
Sbjct: 181 ESEEDTQAEKDRKAAFFASDVAPSEEHSSFLSMNLSRPIIKSLTTLGFNTPTPIQAATIP 240
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSM 215
+AL G+D+ G+A+TGSGKTAAF +P LERL+YR K+ A R L+L PTRELAVQ +
Sbjct: 241 VALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGKKAAATRCLVLVPTRELAVQCFEV 300
Query: 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275
K+A TDIR CLVVGGLS K QE +LR+ PD+V+ATPGR+IDHLRNS + L+ L +L
Sbjct: 301 GTKLAAHTDIRSCLVVGGLSLKAQEASLRTRPDVVIATPGRLIDHLRNSPTFTLEALDIL 360
Query: 276 ILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS 335
+LDEADR+LE GFS E+ E+++ CP RQTMLFSAT+T+ VDEL+++SL KP+RL DP
Sbjct: 361 VLDEADRMLEDGFSDELTEIIKSCPTSRQTMLFSATMTDTVDELVRMSLNKPVRLFVDPK 420
Query: 336 AKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395
L +E VR+R +E + A+L +LC +TF +K IIF +K+ AH+++I+F L +
Sbjct: 421 RTTARGLVQEFVRVRAGKEAERSALLAALCKRTFRTKSIIFFRSKKLAHQMRIVFSLLGM 480
Query: 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYV 455
K+ ELHG+L+Q QRL+AL+ FR VD+L+ATD+A+RGLDI G++TVINY P L Y+
Sbjct: 481 KSDELHGDLSQEQRLKALQQFRDGTVDYLMATDLASRGLDIKGIETVINYDMPGQLALYL 540
Query: 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQM 513
HRVGRTARAG++G +VT V + DR +LKA K A +++ R V ++I KWS+ + +
Sbjct: 541 HRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHAAGEDQVRHRQVPAEAIAKWSEKLASL 600
Query: 514 EDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
+++++ ILQEE+EE+ R+AEME K +N+I H+EEI+++P RTWF T KEK A K
Sbjct: 601 KNEISEILQEEKEEKQFRQAEMELKKGQNLIEHEEEIYSKPARTWFQTGKEKAKAEAVSK 660
Query: 574 ASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKL 633
E G T A E +K KR++ L R+ +R+ A M EDE D
Sbjct: 661 QQYEAG------YTPAGGKEKKVAGDKPKRDKYAGLSRRVKRRKMA---MEEDEGAADST 711
Query: 634 QVCNCI 639
+ +
Sbjct: 712 AIRTAV 717
>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
Length = 924
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/493 (53%), Positives = 346/493 (70%), Gaps = 10/493 (2%)
Query: 112 SFF--APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
+FF APAD S + F E+NLSRPLLRA +L ++ T IQAA IP AL GRD+ A
Sbjct: 329 AFFEQAPADIIS--SKQFTEMNLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACA 386
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
TGSGKTAAF LP LERLLYR K PA RVL+L+PTRELAVQ H+M EK+A+FTDIR L
Sbjct: 387 KTGSGKTAAFLLPVLERLLYRQKTNPASRVLVLSPTRELAVQCHAMGEKLAKFTDIRMSL 446
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+ GG STK Q+ LR+ PD++VATPGR+IDHL+NS DL+ + VLI+DEADRLLE+GF
Sbjct: 447 ICGGFSTKRQQAELRAHPDVIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFK 506
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E++R C RQTMLFSAT+T++V+ LI LS+ KPLR+ + + + LT+E VR+
Sbjct: 507 EEVDEIIRQCSVSRQTMLFSATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRV 566
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R RE +EA++L++C ++F +K I+F +KQ AHR K++FGL LKAAELHG+L Q QR
Sbjct: 567 RPQREKEKEAIVLAVCKRSFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQR 626
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
LE+LE F++ VDFL+ATD+A+RGLDI+GV+TV+N P LT Y+HRVGRTARAGR G
Sbjct: 627 LESLEAFKEGRVDFLLATDLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGR 686
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
+++ V + +R LLK I K A L SR + I K+S I +AAI++ E+EE++
Sbjct: 687 SLSLVCEGERKLLKEIVKHATVPLSSRSIPSDVIEKFSTKIRGASKDIAAIMKAEKEEKM 746
Query: 530 LRKAEMEATKAENMIAHKEEIFARPKRTWFV------TEKEKKLAVKADKASIEKGKGSG 583
L +AEMEA KA NM+ H++EI+++P RTWF T KE A A +KGK
Sbjct: 747 LLQAEMEAAKASNMMEHEKEIYSKPARTWFQDALAKKTSKENSKVAHAGGAVADKGKTQQ 806
Query: 584 NEVTSAQQAEDLK 596
+ + EDL+
Sbjct: 807 ARPSKRKSEEDLQ 819
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/522 (49%), Positives = 364/522 (69%), Gaps = 15/522 (2%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FF G S SF+ +NLSRP++++ LG++ PTPIQAA IP+AL G+D+ G+A+T
Sbjct: 174 AFFDSESGPSEAHTSFLSMNLSRPIIKSLTTLGFTTPTPIQAATIPVALLGKDVVGNAVT 233
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P LERL+YR K+ A R L+L PTREL VQ + K+A TDIR L
Sbjct: 234 GSGKTAAFIIPMLERLMYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTDIRFAL 293
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VVGGLS K QE LR+ PD+V+ATPGR+IDH+RNS + LD L +L+LDEADR+LE GF+
Sbjct: 294 VVGGLSIKAQEANLRTRPDVVIATPGRLIDHIRNSPTFTLDALDILVLDEADRMLEDGFA 353
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CP RQTMLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+
Sbjct: 354 DELTEIIKSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFVDPKRATARGLLQEFVRV 413
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E + A+L++LC +TF S+VIIF +K+ AH+++I+F L +K ELHG+L+Q QR
Sbjct: 414 RAGKEAERSALLVALCKRTFKSRVIIFFRSKKLAHQMRIVFRLLDMKCDELHGDLSQEQR 473
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L+AL+ FR HVD+L+ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG++G
Sbjct: 474 LKALQQFRDGHVDYLMATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGR 533
Query: 470 AVTFVTDNDRSLLKAIAKRAGS---KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE 526
+VT V + DR +LKA K + +++ R V ++ ++KW++ ++ ++ +++ ILQEE+E
Sbjct: 534 SVTLVGEADRKMLKAAIKHSSGGEDQIRHRQVPQEVVSKWAQKLDSLKQEISEILQEEKE 593
Query: 527 ERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 586
E+ LR+AEME K +NMI H+ EIF+RP RTWF T KEK A K E G +G +
Sbjct: 594 EKQLRQAEMELKKGQNMIEHEAEIFSRPARTWFQTGKEKAKAEALSKQQYEAGFDAGKKG 653
Query: 587 TSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDED 628
S + A+ K KR++ L R+ +R R+M +ED
Sbjct: 654 KSKEPAQ-----TKPKRDKFAGLSRRAKR-----RKMAMEED 685
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/459 (53%), Positives = 340/459 (74%), Gaps = 4/459 (0%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
NSF+ +NLSRPL++A LG++KPTPIQA+ IP+AL G+D+ G+A+TGSGKTAAF +P +
Sbjct: 194 NSFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMI 253
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
ERLL+R K+ AIR L+L PTRELAVQ + + K++ TDIR CLVVGGLS K QE
Sbjct: 254 ERLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKSQEAD 313
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LRS PDIV+ATPGR+IDH+RNS S LD L +L++DEADR+L GFS E+ E+++ CP+
Sbjct: 314 LRSRPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKSCPRS 373
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQTMLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L+
Sbjct: 374 RQTMLFSATMTDSVDELVRVSLEKPVRLFVDPKRTTARGLIQEFVRVRAGKEAERSAMLV 433
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+LC +TF +VI+F +K+ AH+++I+F L +K ELHG+L+Q QRL AL+LFR VD
Sbjct: 434 TLCRRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVD 493
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FL+ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAGR G AVT V + DR +L
Sbjct: 494 FLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKML 553
Query: 483 KAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
+A K A + +++ R++ +++ WS + +++D++ +L+EE+EE+ +RKAEME K
Sbjct: 554 RAAIKHAAAEDQVRHRVLPTEALQHWSDKLVELKDEITHVLREEKEEKQMRKAEMELKKG 613
Query: 541 ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
+N+I H+ EIF+RP RTWF T +EKK + K E+G
Sbjct: 614 QNLIEHQNEIFSRPARTWFQTGQEKKASQTISKNEHEQG 652
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/518 (50%), Positives = 353/518 (68%), Gaps = 8/518 (1%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
++ ++F + LSRP+LRA + +KPT IQ IP+AL G+DIC SA TGSGKTAAF
Sbjct: 211 SAIKVDTFADFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAF 270
Query: 180 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LERL R +RI A RV+I+ P RELA Q S++ K+A+FTDI LVVGGL K Q
Sbjct: 271 LLPILERLQLRTRRIAATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQ 330
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E LR+ PDI+V TPGRMIDHLRNS SV LD L +L+LDEADRLLELGF+ EI E+VR+C
Sbjct: 331 ELELRTCPDIIVCTPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMC 390
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P+ RQTMLFSAT+T +D+LI LS+ +P+R+ ADP L +E VRIR RE +++A
Sbjct: 391 PRARQTMLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDA 450
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+LL+LC++ FT K I+F TK AHR+ ILFGL+ +KAAELHGNLTQ +RL+ALE FR+
Sbjct: 451 ILLALCTRAFTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQG 510
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
VD L+ TDVAARG+D+ GV+ VINY P+D+T+YVHRVGRTARAG+ G AVT ++ R
Sbjct: 511 AVDILLCTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSEYRR 570
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
++K + + KSR V + IT+W I+ ++ + IL EE+ E+ + E EA +
Sbjct: 571 LIMKQVTRHCHGFAKSRAVPDSVITQWKAKIQSLQQDITHILTEEKVEKRMHNVEKEARR 630
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKK--------LAVKADKASIEKGKGSGNEVTSAQQ 591
A+N+I++++EI +RP RTWFV+EKEKK ++ A E+GK +
Sbjct: 631 AQNLISYQDEITSRPARTWFVSEKEKKKIQENAAIQRLEDQSAEAERGKSKKRKADGDSG 690
Query: 592 AEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQ 629
A++ K K R+R R+ +L +A + +++ Q
Sbjct: 691 ADEAKPKHLNHRKRRLQEIRQHEEQLVSAHKQHDEDGQ 728
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/459 (53%), Positives = 340/459 (74%), Gaps = 4/459 (0%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
NSF+ +NLSRPL++A LG++KPTPIQA+ IP+AL G+D+ G+A+TGSGKTAAF +P +
Sbjct: 194 NSFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMI 253
Query: 185 ERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
ERLL+R K + AIR L+L PTRELAVQ + + K++ TDIR CLVVGGLS K QE
Sbjct: 254 ERLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKSQEAD 313
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LRS PDIV+ATPGR+IDH+RNS S LD L +L++DEADR+L GFS E+ E+++ CP+
Sbjct: 314 LRSRPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKSCPRS 373
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQTMLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+R +E + A+L+
Sbjct: 374 RQTMLFSATMTDSVDELVRVSLEKPVRLFVDPKRTTARGLIQEFVRVRAGKEAERSAMLV 433
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+LC +TF +VI+F +K+ AH+++I+F L +K ELHG+L+Q QRL AL+LFR VD
Sbjct: 434 TLCRRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVD 493
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FL+ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAGR G AVT V + DR +L
Sbjct: 494 FLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKML 553
Query: 483 KAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
+A K A + +++ R++ +++ WS + +++D+++ +L+EE+EE+ + KAEME K
Sbjct: 554 RAAIKHAAAEDQVRHRVLPTEALQHWSDKLVELKDEISHVLREEKEEKQMLKAEMEVKKG 613
Query: 541 ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
+N+I H+ EIF+RP RTWF T +EKK + K E+G
Sbjct: 614 QNLIEHQNEIFSRPARTWFQTGQEKKASQTISKNEHEQG 652
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/535 (48%), Positives = 371/535 (69%), Gaps = 15/535 (2%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FFA +S +SF+ +NLSRP+L+A LG++ PTPIQAA IP+ L G+D+ G+A+T
Sbjct: 201 AFFASDAPSSDTHSSFLTMNLSRPVLKALTTLGFNTPTPIQAATIPVGLLGKDVVGNAVT 260
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P +ERLLYR K+ A R LIL PTRELAVQ + + +K+ TDI+ CL
Sbjct: 261 GSGKTAAFIIPMIERLLYRDKGKKAAATRCLILVPTRELAVQCYEVGKKLGTHTDIQFCL 320
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+VGGLS K QE ALR+ PD+V+ATPGR+IDHLRNS S LD L +L+LDEADR+L GF+
Sbjct: 321 IVGGLSLKSQEVALRARPDVVIATPGRLIDHLRNSPSFTLDALDILVLDEADRMLSDGFA 380
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CP RQTMLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR+
Sbjct: 381 DELTEIIQSCPTSRQTMLFSATMTDSVDELVKMSLNKPVRLFVDPKRSTARGLVQEFVRV 440
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E ++ A+L++LC +TF S V+IF +K+ AH+++I+F L + ELHG+L+Q QR
Sbjct: 441 RAGKESDRSALLVALCKRTFKSGVLIFFRSKKLAHQVRIMFSLLGMSCEELHGDLSQEQR 500
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L++L+LFR VD+L+ATD+A+RGLDI G+ TVIN+ P L Y+HRVGRTARAG++G
Sbjct: 501 LKSLQLFRDGAVDYLMATDLASRGLDIKGIDTVINFDMPGQLAQYLHRVGRTARAGKKGR 560
Query: 470 AVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR +LKA K + +++ R V + + K+ K ++ ++ ++ ++Q+E+EE
Sbjct: 561 SVTLVGEADRKMLKAAIKHSAGADQVRHRTVPPEIVAKYVKKLDSLKPEITGVMQDEKEE 620
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 587
+ LRKAEME K +NMI H++EI++RP RTWF + KEK+ A K+ E G + N
Sbjct: 621 KHLRKAEMELQKGQNMINHEDEIYSRPARTWFQSGKEKQKAADLSKSQYEAGYSAAN--- 677
Query: 588 SAQQAEDLKIK-EKRKREREKNLPRK-ERRKLEAAREMLEDEDQVDKLQVCNCIV 640
A + +D + K KR++ L R+ +RRKL LE+++ +V N +
Sbjct: 678 -AGKGKDAPVDTTKPKRDKFSGLSRRVKRRKL-----ALEEDEAAGDHKVVNAAI 726
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/532 (50%), Positives = 369/532 (69%), Gaps = 13/532 (2%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
++F GA +SF+ +NLSRP+L+A LG++KPTPIQAA IP+AL G+D+ G+A+T
Sbjct: 166 AYFDSESGAPAEHSSFLTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVT 225
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P LERLLYR K+ A R L+L PTRELAVQ + + +K+A TDI L
Sbjct: 226 GSGKTAAFTIPMLERLLYREKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVAL 285
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+VGGLS K QE LR+ PDIV+ATPGR+IDH+ NS S LD+L VL+LDEADR+L GF+
Sbjct: 286 IVGGLSLKSQEATLRARPDIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFA 345
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ CPK RQTMLFSAT+T+ VDEL+++SL KP+RL DP L +E VR+
Sbjct: 346 DELTEIIKACPKSRQTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRV 405
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R RE + +L++LC++TF ++VIIF +K+ AH+L+I+FGL LK ELHG+L+Q QR
Sbjct: 406 RAGREKERSPLLVALCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQR 465
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L AL+ FR VD+L+ATD+A+RGLDI GV+TVINY P L Y+HRVGRTARAG++G
Sbjct: 466 LNALQQFRDGTVDYLMATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGR 525
Query: 470 AVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
+VT V + DR +LKA K + +++ R V + + KW++ +E ++D+++ IL+EE+EE
Sbjct: 526 SVTLVGEGDRKMLKAAIKHSTGQDQIRHRTVPPEVVAKWTEKLEGLKDEISEILKEEKEE 585
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVT 587
+ +++AEME K +NMI H++EIF+RP RTWF T KEK A K E G
Sbjct: 586 KQIQQAEMELRKGQNMIEHEKEIFSRPARTWFQTGKEKASAEAVSKEQYENGLDMAKAPK 645
Query: 588 SAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKLQVCNCI 639
S + A++ K KR++ L RK +R R++ +ED+ D V I
Sbjct: 646 SKKGADE----PKPKRDKFSGLSRKAKR-----RKLANEEDEADTKAVAAAI 688
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/510 (50%), Positives = 355/510 (69%), Gaps = 8/510 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
++F+ +NLSRP++++ +L + PTPIQAA IP+AL G+DI G+A+TGSGKTAAF +P L
Sbjct: 176 STFLTMNLSRPIMKSLTSLSFHTPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFMIPIL 235
Query: 185 ERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
ERLLYR K A R L+L PTRELAVQ + K+A TDI+ LVVGGLS K QE
Sbjct: 236 ERLLYRQKGKNAAATRCLVLVPTRELAVQCFEVGTKLAAHTDIQMSLVVGGLSLKAQEAT 295
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LRS PD+V+ATPGR+IDHLRNS + +LD L VL+LDEADR+L GF+ E+ E+V+ CP+
Sbjct: 296 LRSKPDLVIATPGRLIDHLRNSPTFNLDALDVLVLDEADRMLSDGFADELEEIVKSCPRS 355
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQTMLFSAT+T+ VDEL+K+SL KP+RL DP L +E VR++ RE + A+L+
Sbjct: 356 RQTMLFSATMTDSVDELVKMSLNKPVRLFVDPKRATAKGLVQEFVRVKAGRESERAAILV 415
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+LC +TF +VIIF +K+ AH+++I+FGL ++A ELHG+LTQ QRL +L+ FR VD
Sbjct: 416 TLCKRTFRERVIIFFRSKKLAHQMRIMFGLLDMRADELHGDLTQEQRLTSLQAFRDGKVD 475
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
+L+ATD+A+RGLDI G++TVINY P L Y+HRVGRTARAG+ G +VT V + DR +L
Sbjct: 476 YLMATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKNGRSVTLVGEADRKML 535
Query: 483 KAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
KA K S K++ R+V + + KWS+ I ++D++ +L +E+E + +R+AEME K
Sbjct: 536 KAAIKHGSSEDKVRHRLVPAEVVEKWSEQIGSLQDEIQIVLDQEKEAKQMRQAEMELQKG 595
Query: 541 ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEK 600
ENM+ +++EIF+RP RTWF T KEK+ A + + E G G A + K K
Sbjct: 596 ENMLKYEDEIFSRPARTWFQTSKEKEQAQEKSRRQYEAGLGD----NKAAKVVAGKATIK 651
Query: 601 RKREREKNLPRKERRKLEAAREMLEDEDQV 630
KR++ L RK +R+ A E + +D V
Sbjct: 652 PKRDKFAGLSRKAKRRKLAQEEDAQIKDSV 681
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/473 (52%), Positives = 331/473 (69%), Gaps = 7/473 (1%)
Query: 111 KSFFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFA A+ A SF ++LSRP+LR ++G+ KPTPIQA IP+AL G+D+
Sbjct: 265 KDFFAAEEPKAEKGKGGAASFQGMSLSRPILRGLASVGFGKPTPIQAKAIPMALMGKDVV 324
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A TGSGKT AF +P LERLLYRPK++P RV++LTPTRELA+Q H++ K+A TDI+
Sbjct: 325 GGAQTGSGKTGAFMVPILERLLYRPKKVPTSRVVVLTPTRELAIQCHAVAIKLASHTDIK 384
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 385 FCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLED 444
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI+ L KP+R+ D K TL +E
Sbjct: 445 GFADELNEILTTLPKSRQTMLFSATMTSSVDTLIRAGLNKPVRIMVDSQKKTVGTLVQEF 504
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC K +T +VIIF K+ AH +I+FGL L AELHG++ Q
Sbjct: 505 VRLRPGREEKRMGYLVHLCKKLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMNQ 564
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR++++E FR V FL+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR
Sbjct: 565 TQRIQSVEDFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGR 624
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G AVT + DR ++KA K G+K+ SRI+ W ++++E +V A++QE
Sbjct: 625 SGVAVTLAAEPDRKVVKAAVKAGKAQGAKISSRIIEAADADGWQDKVDELEGEVEAVMQE 684
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 576
E+EE++L +A+M+ K ENM+ H++EI ARP+RTWF TEK+KK A +A +A +
Sbjct: 685 EKEEKVLWQADMQVRKGENMMRHEDEIKARPRRTWFETEKDKKAAREAGRAEL 737
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/450 (56%), Positives = 334/450 (74%), Gaps = 4/450 (0%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG +F A F +L+LSRPL RACE LGY+ PTPIQAA IP+ALTGRD+CG A TGSGKTA
Sbjct: 203 DGTTFSAQCFNDLHLSRPLCRACEKLGYATPTPIQAAIIPIALTGRDVCGRAQTGSGKTA 262
Query: 178 AFALPTLERLLYRPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AFALP LER+L+RPK + AI V+I+ PTRELAVQ MI+++ ++T+++ +VGGLS
Sbjct: 263 AFALPLLERMLHRPKNAVSAIHVVIMVPTRELAVQCAQMIQRLGEYTNVQVATIVGGLSM 322
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
+ Q ALR P+IVVATPGR+IDH+RN+ S +D+A ++LDEADRLLE+GF EI E+V
Sbjct: 323 ERQAAALRQRPEIVVATPGRLIDHVRNTHSFGFEDVAAVVLDEADRLLEMGFLEEIKEIV 382
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
R P++RQT+LFSATLT V+EL LS+ P RLSAD P TLTEE+V+I+
Sbjct: 383 RNMPRQRQTLLFSATLTSAVEELASLSMRNPARLSADSLGTTPMTLTEEIVKIKPQFVAK 442
Query: 357 QEAVLLSLCSKTFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
+EA LLSL S++F K I+F+ TK AHRLKI+ GL+ +KA ELHG++TQ QRL ALE
Sbjct: 443 KEAHLLSLLSRSFKGKETIVFAKTKVQAHRLKIVLGLSNIKACELHGDMTQTQRLAALED 502
Query: 416 FRKQ-HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
FR ++ATDVAARGLDI V V++Y P+++ SY+HRVGRTARAGR+G A+TF+
Sbjct: 503 FRSNAETKIMVATDVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKGVAITFM 562
Query: 475 TDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
+ DR+L+K + KR G KL+SRIV + +W + IE Q+ I +EER E+ ++KAE
Sbjct: 563 EEYDRALVKTLQKR-GQKLQSRIVPRDVVDEWHEKIEGYAAQIEEIEEEERAEKHMQKAE 621
Query: 535 MEATKAENMIAHKEEIFARPKRTWFVTEKE 564
MEATKAENM+ H EI +RPK+TWF +E++
Sbjct: 622 MEATKAENMLEHANEIKSRPKKTWFESERD 651
>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 944
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/461 (54%), Positives = 321/461 (69%), Gaps = 3/461 (0%)
Query: 108 GDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
GD D AS F +LN+SRPLLRA EA+GY PT +Q +P AL GRD+C
Sbjct: 290 GDDADASPGGDDASSGGVPFQQLNISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCA 349
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
SA TGSGKTAAF LP LERLLYRPK++ RV+I+TPTREL VQ+HSM ++QFTDI C
Sbjct: 350 SATTGSGKTAAFLLPILERLLYRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIAC 409
Query: 228 CLVVGGLST-KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
LVVGG K QE LR+ PDIV+ TPGRM+DHL NS SV +DD+ +L+LDEADRLLEL
Sbjct: 410 ALVVGGNKNLKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLEL 469
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF E+ ELV+ CP RQT+LFSAT+ VD+L L+L KP+R+ A P P L +E
Sbjct: 470 GFQEEVAELVKSCPIGRQTLLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEF 529
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VRIR+ RE ++EA+LLSL ++TF +K I+F TK AHRL I+ G+A ++AAELHGNL
Sbjct: 530 VRIRQSREQDREAILLSLLTRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAM 589
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QRLEAL+ F+ V L+ATD+AARGLDI GV TVIN+ PR SY+HRVGRTARAG
Sbjct: 590 TQRLEALDRFKSGDVTVLVATDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGC 649
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGS--KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G +VT + ++ R ++K + K G ++KSR V + +I + IE ME V AIL EE
Sbjct: 650 GGRSVTLIGESRRIVMKEVLKTQGEGVEIKSRAVPQSAIDHFRSKIEGMEASVKAILTEE 709
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ E+ R A MEA +A N++ H++EI ARP R W V+++ K
Sbjct: 710 KVEKEERCAMMEADRAVNLVEHQKEIHARPARQWIVSQQRK 750
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/526 (48%), Positives = 354/526 (67%), Gaps = 16/526 (3%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAP----ADGA--SFHANSFMELNLSRPLLRA 139
D E D D + E +DD A ++FFAP A GA + HA +F L LSRP+LR
Sbjct: 235 GDIESDGSSD-EGEKDDDLEEAARREAFFAPEEKPAKGAKAATHA-TFQSLGLSRPILRG 292
Query: 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199
A+G+S PTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P RV
Sbjct: 293 LSAVGFSAPTPIQAKTIPMALQGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRV 352
Query: 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID 259
IL PTRELA+Q H++ K+A TDI+ CL VGGLS K+QE LR PD+++ATPGR ID
Sbjct: 353 AILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFID 412
Query: 260 HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319
H+RNS+S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT++ VD L
Sbjct: 413 HMRNSVSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSATMSSSVDNL 472
Query: 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT 379
I++ L +P+RL D + TL +E +R+R RE + LL LC+ +T +VI+F
Sbjct: 473 IRVGLNRPVRLLVDAQKQTVGTLVQEFIRLRPGRETKRMGYLLYLCANIYTDRVIVFFRQ 532
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K+ AHR +++FGL+ LKA ELHG+++Q QR+ ++E FR FL+ATD+A+RGLDI GV
Sbjct: 533 KKEAHRARVIFGLSGLKATELHGSMSQEQRINSVEAFRDGKASFLLATDLASRGLDIKGV 592
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSR 496
TVINY P+ Y+HRVGRTARAGR+G A T + DR ++KA K G+K+ SR
Sbjct: 593 DTVINYEAPQSHEIYLHRVGRTARAGRQGRACTLAAEPDRKIVKAAVKTGRTQGAKIVSR 652
Query: 497 IVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
++ +W+ ++ M+D++ IL EE+E++ L + EME K EN++AH EEI RP+R
Sbjct: 653 VIEASEADEWAAKVDDMKDEIDEILIEEKEDKQLAQVEMEVRKGENIMAHGEEIKGRPRR 712
Query: 557 TWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRK 602
TWF +E++K A K +A + +G E ++ L K+K+K
Sbjct: 713 TWFESEQDKLSAKKVGRAEL-----NGVESILKKKPGKLSNKDKKK 753
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/516 (50%), Positives = 355/516 (68%), Gaps = 36/516 (6%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L+R LLR AL +S+PTPIQA IP+AL G+DI A+TGSGKTAAF +P +ER
Sbjct: 79 FTALQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIPIMER 138
Query: 187 LLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + RV++L PTRELA+Q HS+ + + +F ++R CL VGGLS K+QE L+
Sbjct: 139 LSYRQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQEAELK 198
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PD+++ATPGR+IDH+RNS S ++D+ +L++DEADR+LE GF E++E+VRLCPK+RQ
Sbjct: 199 TRPDVIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCPKQRQ 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-----------RMR 353
TMLFSAT+TEDVD+L++LSL P+RL DP S LT+E VR+R +
Sbjct: 259 TMLFSATMTEDVDQLVRLSLRTPVRLFVDPKRSTASKLTQEFVRVRAQSRLTGHARQQAE 318
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+ ++ A+L++LC +TF +VIIF +K+ AH+LKILFGL L AAELHG+L+Q QRL++L
Sbjct: 319 DQHRAAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQSL 378
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
LFR VDFL+ATD+A+RG+DI GVQTVINY P L Y+HRVGRTARAGR+G AVT
Sbjct: 379 SLFRDGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRAVTL 438
Query: 474 VTDNDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRK 532
V + DR LLK + KR ++K R++ + + K S I ++ +V ILQEE+EER LR+
Sbjct: 439 VGEPDRRLLKTVLKRTPPEQVKHRLMPSEMVQKLSDTIASLKPEVEQILQEEKEERALRQ 498
Query: 533 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQA 592
AEME K ENM+AH++EI+ARP RTWF + EK K +V+ QQ
Sbjct: 499 AEMEVQKGENMMAHQDEIYARPARTWFQS---------------EKAKADAKQVSREQQ- 542
Query: 593 EDLKIKEKRKREREKNLPRKERRKLEAAREMLEDED 628
+ K+ + R+R L R+++R +++ +ED
Sbjct: 543 -NAKVDVSKARDRFAGLSRRKKRN-----KLMREED 572
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 264/551 (47%), Positives = 364/551 (66%), Gaps = 24/551 (4%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPA-----DGASFHAN-SFMELNLSRPLLR 138
H D E + D E E D K+FFAP D A+ A SF E NLSRP+LR
Sbjct: 253 HPDDEASE-PDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQEFNLSRPILR 311
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P R
Sbjct: 312 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 371
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
V IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPGR I
Sbjct: 372 VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFI 431
Query: 259 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+ VD+
Sbjct: 432 DHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDK 491
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSG 378
LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +VI+F
Sbjct: 492 LIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFR 551
Query: 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438
K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD+A+RGLDI G
Sbjct: 552 QKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKG 611
Query: 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKS 495
V+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K G+K+ S
Sbjct: 612 VETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKAQGAKIVS 671
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R+V W+ + ME+++ A+L+EE+ E+ L +AEM+ TK EN+I H+ EI +RPK
Sbjct: 672 RVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPK 731
Query: 556 RTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKE-- 613
RTWF TE+EK++A K A E+ + E +K+ K K+ + R+E
Sbjct: 732 RTWFETEREKRVAKKIGAA----------ELNGPSKKEKVKLSNKDKKRLDAAKLRQEEG 781
Query: 614 --RRKLEAARE 622
R+K +A RE
Sbjct: 782 LGRKKSKAERE 792
>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 275/555 (49%), Positives = 365/555 (65%), Gaps = 57/555 (10%)
Query: 112 SFFA--PADGASFHAN-----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
+FFA PA +S +N SF +LSRP+LRA +L + KPTPIQ+ IP+AL G+D
Sbjct: 313 AFFADEPAATSSKKSNADAETSFGAFSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKD 372
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
I A+TGSGKTAAF +PTLERL +R K + RVLIL PTRELA+Q +S+ + IA+
Sbjct: 373 IVAGAVTGSGKTAAFMIPTLERLTWRAKGRAQEAKTRVLILAPTRELAIQCYSVGKSIAK 432
Query: 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
FTDIR CL VGGLS K QE L+ P++V+ATPGR+IDH+RNS S LDD+ +L++DEAD
Sbjct: 433 FTDIRFCLCVGGLSVKSQEAELKLRPEVVIATPGRLIDHVRNSASFTLDDVEILVMDEAD 492
Query: 282 RLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 340
R+LE GF+ E++E+V+ CPK RQTMLFSAT+T+DV++L++LSL +P+RL DP
Sbjct: 493 RMLEDGFADELNEIVKSCPKGARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAK 552
Query: 341 TLTEEVVRIR---------------------------RMREVNQEAVLLSLCSKTFTSKV 373
L +E VR+R R + + A+LL+LC++TFTS+V
Sbjct: 553 KLIQEFVRVRGSGPGGVAGADGLAGVGDEPSTSTVGKRSEDAQRPALLLALCTRTFTSQV 612
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
IIF +K+ AH+LKI+FGL L A ELHG+L+Q QR++AL FR VDFL+ATD+A+RG
Sbjct: 613 IIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLASRG 672
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSK 492
LDI GVQTVINY P +Y+HRVGRTARAGR G AVT V + DR +LK AI K + +
Sbjct: 673 LDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQ 732
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+K RI+ +K + +EQ++ +V A+L+EE+EE+ LR AEME K ENM AH +EIFA
Sbjct: 733 IKHRIIPAAVASKMLETLEQLKPEVDAVLREEKEEKALRIAEMELKKGENMAAHADEIFA 792
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRK 612
RPKRTWF T +K+ A KA E + D K K R++ L RK
Sbjct: 793 RPKRTWFQTGADKQQAALVSKAQYE-------------ASMDAAKKGKEGRDKYAGLSRK 839
Query: 613 ERRKLEAAREMLEDE 627
+RR +M+ DE
Sbjct: 840 KRRS-----KMMRDE 849
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/468 (52%), Positives = 336/468 (71%), Gaps = 9/468 (1%)
Query: 111 KSFFAPADGASFHAN----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K+FFAP + AN +F E NLSRP+LR A+G++ PTPIQ IP+AL G+DI
Sbjct: 286 KAFFAPEEKVDTKANMAKMTFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIV 345
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
GSA+TGSGKTAAF +P LERLL+RP+++P RV+IL PTRELAVQ +++ K+A FTD+
Sbjct: 346 GSAVTGSGKTAAFIVPILERLLFRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVT 405
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 406 FCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLED 465
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ +D+LI++ + +P+RL D STL +E
Sbjct: 466 GFADELNEILTTIPKSRQTMLFSATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEF 525
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + LL LC + ++ +VIIF K+ AHR++I+F L LKAAELHG+L+Q
Sbjct: 526 VRLRPGREDKRLGYLLHLCKEIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQ 585
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAGR
Sbjct: 586 EQRIKSVENFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGR 645
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
G A T + DR ++K +A RA G+K+ SR++ + W++ E+M D+VA ILQ
Sbjct: 646 SGRACTIAAEPDRKIVK-LAVRAGKAQGAKIASRVIEQAVADSWAQKAEEMADEVAEILQ 704
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
EE+ E+ L +AEM+ TK EN++ H EI +RPKRTWF TEKEKK++ K
Sbjct: 705 EEKTEKQLSQAEMQFTKGENLMKHGAEIMSRPKRTWFETEKEKKVSRK 752
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 345/506 (68%), Gaps = 23/506 (4%)
Query: 82 DNDHSD--SEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD------GASFHANSFMELNLS 133
DND SD SE D E+ K K+FFAP + A SF E NLS
Sbjct: 263 DNDGSDIESEVDAEEEAK------------RKAFFAPEEQTSEQSAAELSKKSFQEFNLS 310
Query: 134 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR 193
RP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP++
Sbjct: 311 RPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRK 370
Query: 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 253
+P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++AT
Sbjct: 371 VPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIAT 430
Query: 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313
PGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 431 PGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 490
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKV 373
+ VD+LI++ L +P+RL D L +E VR+R RE + LL LC + +T +V
Sbjct: 491 DSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCKEVYTGRV 550
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F K+ AHR++I FGL LKAAELHG+++Q QR+ ++E FR+ V FL+ATD+AARG
Sbjct: 551 IVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATDLAARG 610
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---G 490
LDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K + G
Sbjct: 611 LDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQG 670
Query: 491 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 550
+K+ SR+V +W++ + +E+++ A+L+EE+ E+ L +AEM+ T++ENMI H+ EI
Sbjct: 671 AKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIKHEAEI 730
Query: 551 FARPKRTWFVTEKEKKLAVKADKASI 576
+RPKRTWF +E+EK L+ KA A +
Sbjct: 731 MSRPKRTWFASEREKILSKKAGAAEL 756
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/498 (51%), Positives = 340/498 (68%), Gaps = 13/498 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGAS----FHANSFMELNLSRPLLRACEALGYSKPTPIQAA 154
+DE+D FFAP + +SF ++LSRP+LR A+G++KPTPIQA
Sbjct: 226 DDEEDAEEQAKRDEFFAPEERQKSDKIVDLSSFQGMSLSRPILRGLAAVGFTKPTPIQAK 285
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214
IP+AL G+D+ G A+TGSGKT AF +P LERLL+RPK+IP RV++LTPTRELA+Q H
Sbjct: 286 TIPIALMGKDVVGGAVTGSGKTGAFFVPILERLLFRPKKIPTTRVVVLTPTRELAMQCHD 345
Query: 215 MIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274
+ K+A++TDI+ L VGGLS K QE LR PDI+VATPGR IDH+RNS S ++D + +
Sbjct: 346 VGTKLARYTDIKFSLAVGGLSLKAQEVELRLRPDIIVATPGRFIDHMRNSASFNVDTVEI 405
Query: 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334
L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L KP+RL D
Sbjct: 406 LVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSTVDRLIRVGLNKPVRLMVDS 465
Query: 335 SAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA 394
K +TL +E VR+R RE + L LC + +VIIF K+ AHR +I+FGL
Sbjct: 466 QKKTVTTLVQEFVRLRPGREDKRMGYLAHLCKTFYHERVIIFFRQKKEAHRARIIFGLLG 525
Query: 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454
L AELHG++ Q+QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L Y
Sbjct: 526 LSCAELHGSMNQSQRISSVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIY 585
Query: 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIE 511
VHRVGRTARAGR+G AVT + DR ++KA K G+K+ SR++A K + I+
Sbjct: 586 VHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAGKAQGAKITSRVIAPADADKLQEEID 645
Query: 512 QMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 571
MED++ I+QEE+EER L +AEM+ K EN+I H+ EI +RPKRTWF TE +KK A +A
Sbjct: 646 GMEDEIDEIMQEEKEERQLAQAEMQVKKGENLIEHEAEIKSRPKRTWFETEHDKKKAKQA 705
Query: 572 DKASIE------KGKGSG 583
K + K KGSG
Sbjct: 706 GKDELNGLRESLKKKGSG 723
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/496 (51%), Positives = 337/496 (67%), Gaps = 13/496 (2%)
Query: 101 EDDFSNAGDTKSFFAPADGAS----FHANSFMELNLSRPLLRACEALGYSKPTPIQAACI 156
E+D FFAP + +SF ++LSRP+LR A+G++KPTPIQA I
Sbjct: 225 EEDAEEQAKRDEFFAPEERQKSDKIVDLSSFQGMSLSRPILRGLAAVGFTKPTPIQAKTI 284
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
P+AL G+D+ G A+TGSGKT AF +P LERLL+RPK+IP RV++LTPTRELA+Q H +
Sbjct: 285 PIALMGKDLVGGAVTGSGKTGAFFVPILERLLFRPKKIPTTRVVVLTPTRELAMQCHDVG 344
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
K+A++TDI+ L VGGLS K QE LR PDI+VATPGR IDH+RNS S ++D + +L+
Sbjct: 345 TKLARYTDIKFSLAVGGLSLKAQEVELRLRPDIIVATPGRFIDHMRNSASFNVDTVEILV 404
Query: 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD LI+ L KP+RL D
Sbjct: 405 LDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSTVDRLIRAGLNKPVRLMVDSQK 464
Query: 337 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
K +TL +E VR+R RE + L LC + +VIIF K+ AHR +I+FGL L
Sbjct: 465 KTVTTLVQEFVRLRPGREDKRMGYLAYLCKTFYHERVIIFFRQKKEAHRARIIFGLLGLS 524
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
AELHG++ Q+QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L YVH
Sbjct: 525 CAELHGSMNQSQRISSVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVH 584
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQM 513
RVGRTARAGR+G AVT + DR ++KA K G+K+ SRI+A K + I+ M
Sbjct: 585 RVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAGKAQGAKITSRIIAPADADKLQEEIDGM 644
Query: 514 EDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
ED++ I+QEE+EER L +AEM+ K EN+I H+ EI +RPKRTWF TE +KK A +A K
Sbjct: 645 EDEIDEIMQEEKEERQLAQAEMQVKKGENLIEHEAEIKSRPKRTWFETEHDKKKAKQAGK 704
Query: 574 ASIE------KGKGSG 583
+ K KGSG
Sbjct: 705 DELNGLRESLKKKGSG 720
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/510 (49%), Positives = 355/510 (69%), Gaps = 18/510 (3%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
HA SF+ +NLSRP+++A +G KPTPIQAA +P+AL G+D+ G A+TGSGKTAAF +P
Sbjct: 185 HA-SFLTMNLSRPIIKALTTMGLHKPTPIQAAAVPVALLGKDVVGGAVTGSGKTAAFTIP 243
Query: 183 TLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
+ERLLYR K A R L++ PTRELAVQ + ++A TD+R CLVVGGLS K QE
Sbjct: 244 IIERLLYRDKGKNAAATRCLVVVPTRELAVQCFEVGTRMAGHTDVRFCLVVGGLSLKSQE 303
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALRS PD+++ATPGR+IDHL NS S LD L +L+LDEADR+LE GF+ E+ E+V+ CP
Sbjct: 304 AALRSRPDVLIATPGRLIDHLHNSPSFTLDALDILVLDEADRMLEDGFADELTEIVKACP 363
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
RQTMLFSAT+T+ VD+LI+LSLTKP+R+ D L +E VR+R +E + A+
Sbjct: 364 VSRQTMLFSATMTDSVDKLIRLSLTKPVRIFVDAKRSMAKGLVQEFVRVRPEKEKERPAL 423
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL +C +TF ++VI+F +K+ AH+++I+FGL +K ELHG+L+Q QRL+AL+ FR
Sbjct: 424 LLCICKRTFKTRVIVFFRSKKLAHQMRIVFGLLDMKCDELHGDLSQEQRLKALQAFRDGS 483
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
VD+L+ATD+A+RGLDI G++TVIN+ P L Y+HRVGRTARAG+ G +VTFV + DR
Sbjct: 484 VDYLMATDLASRGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADRK 543
Query: 481 LLKAIAKRAGSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
+L+A+ K + + ++ R+V ++KW++ EQ++++V+ IL+EE+EE+ LR+AEME
Sbjct: 544 MLRAVVKHSAGEDSVRHRVVPADVVSKWAQKFEQVKEEVSVILKEEKEEKQLRQAEMELK 603
Query: 539 KAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIK 598
K +NMI H++EI++RP RTWF T +EK A + G + A Q
Sbjct: 604 KGQNMIEHEKEIYSRPARTWFQTGQEKNKAAGRTPGRHKANSGGKQKPKDAAQPP----- 658
Query: 599 EKRKREREKNLPRKERRKLEAAREMLEDED 628
KR++ L RK +R R+M +ED
Sbjct: 659 ---KRDKYAGLSRKAKR-----RKMAMEED 680
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 345/506 (68%), Gaps = 23/506 (4%)
Query: 82 DNDHSD--SEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD------GASFHANSFMELNLS 133
DND SD SE D E+ K K+FFAP + A SF E NLS
Sbjct: 299 DNDGSDIESEVDAEEEAK------------RKAFFAPEEQTSEQSAAELSKKSFQEFNLS 346
Query: 134 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR 193
RP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP++
Sbjct: 347 RPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRK 406
Query: 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 253
+P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++AT
Sbjct: 407 VPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIAT 466
Query: 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313
PGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 467 PGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 526
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKV 373
+ VD+LI++ L +P+RL D L +E VR+R RE + LL LC + +T +V
Sbjct: 527 DSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLCKEVYTGRV 586
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F K+ AHR++I FGL LKAAELHG+++Q QR+ ++E FR+ V FL+ATD+AARG
Sbjct: 587 IVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSFLLATDLAARG 646
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---G 490
LDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K + G
Sbjct: 647 LDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQG 706
Query: 491 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 550
+K+ SR+V +W++ + +E+++ A+L+EE+ E+ L +AEM+ T++ENMI H+ EI
Sbjct: 707 AKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIKHEAEI 766
Query: 551 FARPKRTWFVTEKEKKLAVKADKASI 576
+RPKRTWF +E+EK L+ KA A +
Sbjct: 767 MSRPKRTWFASEREKILSKKAGAAEL 792
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/551 (47%), Positives = 364/551 (66%), Gaps = 24/551 (4%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPA-----DGASFHAN-SFMELNLSRPLLR 138
H D E + D E E D K+FFAP D A+ A SF E NLSRP+LR
Sbjct: 745 HPDDEASE-PDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQEFNLSRPILR 803
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P R
Sbjct: 804 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 863
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
V IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPGR I
Sbjct: 864 VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFI 923
Query: 259 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+ VD+
Sbjct: 924 DHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDK 983
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSG 378
LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +VI+F
Sbjct: 984 LIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFR 1043
Query: 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438
K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD+A+RGLDI G
Sbjct: 1044 QKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKG 1103
Query: 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKS 495
V+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K G+K+ S
Sbjct: 1104 VETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKAQGAKIVS 1163
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R+V W+ + ME+++ A+L+EE+ E+ L +AEM+ TK EN+I H+ EI +RPK
Sbjct: 1164 RVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPK 1223
Query: 556 RTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKE-- 613
RTWF TE+EK++A K A E+ + E +K+ K K+ + R+E
Sbjct: 1224 RTWFETEREKRVAKKIGAA----------ELNGPSKKEKVKLSNKDKKRLDAAKLRQEEG 1273
Query: 614 --RRKLEAARE 622
R+K +A RE
Sbjct: 1274 LGRKKSKAERE 1284
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/529 (49%), Positives = 357/529 (67%), Gaps = 16/529 (3%)
Query: 113 FFAPADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
FFA AS + N+F L LSRP+L+A LG++ PTPIQ +P+AL G+D+ G A+T
Sbjct: 192 FFAQQPTASTNKKNTFTSLGLSRPILKAISGLGFTHPTPIQKTVMPVALAGKDVVGQAVT 251
Query: 172 GSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRC 227
GSGKTAAF LP LERL+YRPK + RVL+L PTRELA Q + + +++F DI
Sbjct: 252 GSGKTAAFILPVLERLMYRPKTSSKGGETRVLVLCPTRELAQQCFEVGQSLSKFMGDISF 311
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
CL VGGLS K+QE L+ PD+V+ATPGR+IDH+RNS S LD L +LI+DEADR+LE G
Sbjct: 312 CLCVGGLSLKLQEQQLKQRPDVVIATPGRLIDHVRNSPSFTLDALDILIMDEADRMLEDG 371
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ E+V+ CPK RQTMLFSAT+T+ VDEL++LSL KP+RL DP LT+E V
Sbjct: 372 FKDELDEIVKECPKNRQTMLFSATMTDKVDELVRLSLNKPVRLFVDPKKSTAKGLTQEFV 431
Query: 348 RIRRMREVN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR + + + A LLSLC +TF + IIF +K AHR++I+FGL L A ELHG+L
Sbjct: 432 RIRSNSKNDLKERTATLLSLCRRTFKQRTIIFFRSKALAHRMRIMFGLMELNAEELHGDL 491
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q QRL ALE F+ Q D+L+ATD+A+RGLDI GV+TVIN+ P + Y+HRVGRTARA
Sbjct: 492 SQEQRLNALERFKNQKSDYLLATDLASRGLDIKGVETVINFDLPNQIEIYLHRVGRTARA 551
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSK----LKSRIVAEQSITKWSKIIEQMEDQVAAI 520
G G +V+ + + DR +LK I KR+ ++ +K RIV ++ ++++E ++DQ+ I
Sbjct: 552 GTSGRSVSLIGETDRKMLKNIVKRSSAQSTDSIKHRIVPTDVLSDVAELVESLQDQIDEI 611
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGK 580
L+EE+E+R +R AEME K++NMI H++EI +RP RTWF +EKEKK + +A K
Sbjct: 612 LKEEKEDRAIRVAEMELQKSKNMIEHEDEIKSRPARTWFQSEKEKKDSKEAGKEQYNANF 671
Query: 581 GSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQ 629
G+ + + + L RK L RK+RRK E E+ D+++
Sbjct: 672 DKGDADKTKKTHDSL----GRKLNAFSGLSRKDRRKKEMKEELEADKNK 716
>gi|388854481|emb|CCF51868.1| related to DRS1-RNA helicase of the DEAD box family [Ustilago
hordei]
Length = 935
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/531 (50%), Positives = 348/531 (65%), Gaps = 52/531 (9%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF LSRPLLRA L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +PT+
Sbjct: 326 SSFTSFQLSRPLLRALTTLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI 385
Query: 185 ERLLYRPK-RIP---AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
ERL +R K R P RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE
Sbjct: 386 ERLTWRAKSRTPLQAKSRVLILAPTRELAIQCYSVGKNIAKFTDIRFCLCVGGLSVKSQE 445
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
L+ P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+L+ GF+ E++E+V+ CP
Sbjct: 446 AELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLQDGFADELNEIVKSCP 505
Query: 301 K-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR--------- 350
K RQTMLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 506 KGARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLVQEFVRVRGTASAGVAG 565
Query: 351 -------------------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385
+ + + A+LL+LC++TFTS+VIIF +K+ AH+
Sbjct: 566 TVADEAPSTSNAETSSAETSSGGGRKSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQ 625
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
LKI+FGL L A ELHG+L+Q QR++AL FR VDFLIATD+A+RGLDI GVQTVINY
Sbjct: 626 LKIVFGLLGLSAGELHGDLSQEQRIDALTAFRDGKVDFLIATDLASRGLDIKGVQTVINY 685
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSIT 504
P +Y+HRVGRTARAGR G AVT V + DR +LK AI K ++K RI+
Sbjct: 686 DMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSTAEQIKHRIIPAPVAC 745
Query: 505 KWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
K +E+++ QV A+L EE+EER LR AEM+ K ENMI H +EIF+RPKRTWF T +
Sbjct: 746 KMLATLEELKPQVDAVLHEEKEERALRIAEMQLKKGENMIRHADEIFSRPKRTWFQTSAD 805
Query: 565 KKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERR 615
K A + KAS E A D K + K + ++ L RK+RR
Sbjct: 806 KTQAAEVSKASYE-----------ATMTSD-KNRNKERSDQYAGLSRKKRR 844
>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
Length = 798
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/522 (47%), Positives = 352/522 (67%), Gaps = 26/522 (4%)
Query: 111 KSFFAPADGA----SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFA D H+ SF+E++LSRP+L+ ++G++KPTPIQ+ IP+AL G+D+
Sbjct: 256 KEFFADEDDVKQEKGVHS-SFLEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVV 314
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKT AF +P LERLLYR K++ RV+IL PTRELA+Q H++ K+A TDI+
Sbjct: 315 GGAVTGSGKTGAFLVPILERLLYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIK 374
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE
Sbjct: 375 FCLAVGGLSLKVQEQELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLED 434
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI+ L KP+R+ D K S L +E
Sbjct: 435 GFADELNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEF 494
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ +C +T +VIIF K+ AH +I+FGL + AELHG++ Q
Sbjct: 495 VRLRPGREKKRMGYLVHICKTLYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQ 554
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQR+ ++E FR V+FL+ATD+A+RGLDI GV TVINY P++L Y+HR+GRTARAGR
Sbjct: 555 AQRIASVEAFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGR 614
Query: 467 EGYAVTFVTDNDRSLLKAI---AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR ++KA K G+K+ SRI+ KW I++ME ++ I+QE
Sbjct: 615 SGVALTLAAEPDRKVVKAAVRAGKAQGAKITSRIIEASDADKWQDQIDEMEGEIKEIMQE 674
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E+EE+ L++ EM+ K ENMI ++EEI +RPKRTWF T+ +K+ A K +G
Sbjct: 675 EKEEKQLQQVEMQVKKGENMIKYEEEIASRPKRTWFETQDDKRAA-----------KLAG 723
Query: 584 NEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
E + I+E+ K++ + L K+++KL+A +EM E
Sbjct: 724 REELNG-------IREQLKKKSQGKLSNKDKKKLDAKQEMKE 758
>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
dendrobatidis JAM81]
Length = 741
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/440 (55%), Positives = 327/440 (74%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LSRP+L++ ALGY +PT IQA IPLAL GRDICGSA+TGSGKTAAF +P +E
Sbjct: 188 SFQSLQLSRPVLKSIAALGYVRPTDIQARAIPLALQGRDICGSAVTGSGKTAAFIIPIVE 247
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL+RPK RVLIL PTREL VQ S+ I++FTDI CL VGGL TK QE LR
Sbjct: 248 RLLFRPKNDATTRVLILVPTRELGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRL 307
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDH+ NS S LD + +L++DEADR+L+ GF AE++E+++ P+ RQT
Sbjct: 308 RPDIIIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQT 367
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++VD+LIKLSL +P+RL D + K + L +E +R+R +E ++ A+L +LC
Sbjct: 368 MLFSATMTDNVDDLIKLSLNRPVRLFVDQNTKLTNRLVQEFIRVRGHKETSRPAILAALC 427
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S+T+TS+ I+F +K AAH +KI+FG LKAAELHGNLTQ QRLEALELFR++ V FL+
Sbjct: 428 SRTYTSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQLQRLEALELFREKKVGFLL 487
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A+RGLDI GV+TVINY P+ + YVHRVGRTAR G AV+ V + DR+LLK
Sbjct: 488 ATDLASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDLAGRAVSLVGEADRALLKMA 547
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K +K+RIV + K+ I+ +++D + I EE+EE+ L AE++ T+A+N++
Sbjct: 548 IKNTRDAVKNRIVPANVVEKYEGILAKLKDSIKEIYIEEKEEKELSSAELQITRAQNILG 607
Query: 546 HKEEIFARPKRTWFVTEKEK 565
H++EI +RP RTWF +EKE+
Sbjct: 608 HQDEIMSRPARTWFQSEKER 627
>gi|443897915|dbj|GAC75254.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 909
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/539 (49%), Positives = 357/539 (66%), Gaps = 48/539 (8%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF +LSRP+LRA +L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +P +
Sbjct: 318 SSFASFSLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPAI 377
Query: 185 ERLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
ERL +R K + RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE
Sbjct: 378 ERLTWRAKGRAQEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEA 437
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
L+ P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+LE GF+ E++E+V+ CPK
Sbjct: 438 ELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPK 497
Query: 302 R-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------- 350
RQTMLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 498 GARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLVQEFVRVRGTGTGGVAGA 557
Query: 351 -------------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391
R + + A+LL+LC++TFTS+VIIF +K+ AH+LKI+FG
Sbjct: 558 DGLAGVGQEVSSSAPSGGKRSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFG 617
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
L L A ELHG+L+Q QR++AL FR VDFLIATD+A+RGLDI GVQTVINY P
Sbjct: 618 LLGLSAGELHGDLSQEQRIDALTAFRDGKVDFLIATDLASRGLDIKGVQTVINYDMPGQF 677
Query: 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKII 510
+Y+HRVGRTARAGR G AVT V + DR +LK AI K + ++K RI+ + K + +
Sbjct: 678 EAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSADQIKHRIIPAEVAGKMLETL 737
Query: 511 EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
E+++ +V A+L+EE+EE+ LR AEME K ENM+AH +EIF RPKRTWF T +K A
Sbjct: 738 EELKPEVDAVLREEKEEKALRIAEMELKKGENMVAHADEIFGRPKRTWFQTGADKDKAAT 797
Query: 571 ADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQ 629
KA E + K K+ R++ L RK+RR + R+ +E E+Q
Sbjct: 798 LSKAQYE-------------ATMEAKKKDAPARDKYAGLSRKKRRS-KMMRDEIERENQ 842
>gi|340959217|gb|EGS20398.1| hypothetical protein CTHT_0022270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 806
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/467 (52%), Positives = 330/467 (70%), Gaps = 6/467 (1%)
Query: 111 KSFFAP---ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
K FFA + + A++F +NLSRP+LR ++G++KPTPIQA IP+AL G+D+ G
Sbjct: 266 KEFFAAPEETETKNGQASTFQSMNLSRPILRGLTSVGFTKPTPIQAQTIPIALMGKDVVG 325
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A +TDI+
Sbjct: 326 GAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVATKLAAYTDIKF 385
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 386 CLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDG 445
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E+++ PK RQTMLFSAT+T VD+LI++ L KP R+ D K TLT+E V
Sbjct: 446 FADELNEILKTLPKSRQTMLFSATMTSSVDKLIRVGLNKPARIMVDSQKKTAGTLTQEFV 505
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + LL +C +T +VIIF K+ AH +I+FGL L AELHG++ Q
Sbjct: 506 RLRPGREGKRMGYLLYICKNLYTERVIIFFRQKKVAHEARIIFGLHGLSCAELHGSMNQT 565
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR+ ++E FR V+FL+ATDVA+RGLDI GV TVINY P+ YVHRVGRTARAGR
Sbjct: 566 QRIASVEAFRDGKVNFLLATDVASRGLDIKGVDTVINYEAPQTHEIYVHRVGRTARAGRS 625
Query: 468 GYAVTFVTDNDR---SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G A+T + DR AK+ G+K+ SR++ + K ++ M ++V IL+EE
Sbjct: 626 GTAITLAAEPDRKVVKAAVKAAKQHGAKVVSRVIDAAEVDKLQAEVDAMAEEVQEILREE 685
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 571
+EE+ L++ EM+ K EN+I H+EEI +RPKRTWF +EK+K+ A +A
Sbjct: 686 KEEKQLQQMEMQVRKGENLIKHEEEIKSRPKRTWFESEKDKQRAKQA 732
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/504 (50%), Positives = 353/504 (70%), Gaps = 15/504 (2%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
++FAP+ + SF +NLSRPLLRA + G++ PTPIQAA IP+AL G+D+ G A+T
Sbjct: 173 AYFAPSPTDAQVHTSFTSMNLSRPLLRALTSAGFNSPTPIQAATIPVALLGKDVVGGAVT 232
Query: 172 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
GSGKTAAF +P LERLLYR R RVL+L PTRELAVQ H++ EK+ FTD+RC L+V
Sbjct: 233 GSGKTAAFIIPILERLLYR-SRDAHTRVLVLVPTRELAVQCHAVAEKLGTFTDVRCALIV 291
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGLS K QE LR+ PD+VVATPGR+IDHLRNS S LD L VL+LDEADR+L GF+ E
Sbjct: 292 GGLSLKAQEATLRTRPDLVVATPGRLIDHLRNSRSFALDALDVLVLDEADRMLSDGFADE 351
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
+ E+V+ CP RQTMLFSAT+T+DV+ LI+LSL P+RL DPS + L +E VR+R
Sbjct: 352 LKEIVQSCPTGRQTMLFSATMTDDVETLIRLSLRHPVRLFVDPSKQTARGLVQEFVRVRA 411
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
+E + A+L++LC +T VIIF +K+ AH+ +++FGL LKA ELHGNLTQ QRL
Sbjct: 412 GKEAERPALLVALCQRTARKGVIIFFRSKKLAHQFRVVFGLCGLKALELHGNLTQEQRLN 471
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL FR D+L+ATD+A+RGLDI G++TVINY P + YVHRVGRTARAG++G ++
Sbjct: 472 ALTKFRSGEADYLLATDLASRGLDIRGIETVINYDMPGQIEQYVHRVGRTARAGKKGRSI 531
Query: 472 TFVTDNDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
T V + DR +LKA KR+ K++ R+V + + + +E+++ +V +L+EE+EE++L
Sbjct: 532 TLVGEADRKMLKAAIKRSEADKIRHRVVPSEVVASVVEKLEELKGEVEEVLKEEKEEKLL 591
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQ 590
R AEME K +NMI H+EEIF RPKRTWF T+KEK+ K +G + Q
Sbjct: 592 RTAEMELKKGQNMITHEEEIFGRPKRTWFQTDKEKE-------------KAAGEFASIVQ 638
Query: 591 QAEDLKIKEKRKREREKNLPRKER 614
+ + ++++++ P++++
Sbjct: 639 STRTEPVHNNKSKDKDEDKPKRDK 662
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/515 (48%), Positives = 350/515 (67%), Gaps = 20/515 (3%)
Query: 112 SFFAPADGAS----FHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+FFAP + + +NS F NLSRP+LR A+G+S PTPIQ IP+ L G+D+
Sbjct: 301 AFFAPEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLV 360
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A +TDI
Sbjct: 361 GGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDIT 420
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 421 FCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED 480
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D TL +E
Sbjct: 481 GFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEF 540
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC+ +T++VI+F K+ AHR +I+FGL LKAAELHG+++Q
Sbjct: 541 VRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQ 600
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ A+E FR V FL+ATD+A+RGLDI GV++VINY P+ Y+HRVGRTARAGR
Sbjct: 601 EQRINAVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGR 660
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A T + DR ++KA AK G+K+ SR+V +W+ +E+M+ ++ IL+E
Sbjct: 661 SGRACTIAAEPDRKVVKAAAKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKE 720
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI------- 576
E+EE+ L +AEM+ + +N+I H+ EI ARPKRTWF TE+EK+ A K + +
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAKKRALSELNGPDSVI 780
Query: 577 --EKGKGSGNE---VTSAQQAEDLKIKEKRKRERE 606
EK K SG E + + E+ KI +K K+ERE
Sbjct: 781 KKEKRKLSGKEKKKLDDNRLREEGKIWKKGKKERE 815
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/496 (51%), Positives = 349/496 (70%), Gaps = 8/496 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LE
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL+R AIRVLIL PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR
Sbjct: 251 RLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDHL N+ + LDDL +LILDEADRLL++GF EI+++V CP RQT
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQT 370
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSATL ++V L KLSL +P+R+ D + STL +E V+I+ ++ A+LLSLC
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLC 430
Query: 366 SKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ F IIF +K+ HRL+I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L
Sbjct: 431 TRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYL 490
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+A+DVA+RGLDIIGV+TVINY P ++ +Y+HRVGRTARAG +G + +F+TDNDR LLK
Sbjct: 491 LASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKD 550
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I +A +K KSR V++ ++ W IE++ + + +I++EE +E LRKAE KAE +I
Sbjct: 551 IVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKII 610
Query: 545 AHKEEIFARPKRTWFVTEKEK---KLAVKADKASIEKGKG--SGNEVTSAQQAEDLKIKE 599
++ + PK W+ T++E+ K K + + GK + +VT +K K
Sbjct: 611 SNADANVETPK-VWYKTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIK-KL 668
Query: 600 KRKREREKNLPRKERR 615
K+K++ L RK+RR
Sbjct: 669 KQKKDPYYGLSRKQRR 684
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/518 (48%), Positives = 350/518 (67%), Gaps = 27/518 (5%)
Query: 112 SFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+FFAP + S +++F NLSRP+LR A+G+S PTPIQ IP+ L G+D+
Sbjct: 294 AFFAPEENTTDPEGSSSSSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLV 353
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRP+++P RV+IL PTRELAVQ +++ K+A +TDI
Sbjct: 354 GGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATYTDIT 413
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 414 FCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED 473
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D + TL +E
Sbjct: 474 GFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEF 533
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC +T++VI+F K+ AHR +I+FGL LKAAELHG+++Q
Sbjct: 534 VRLRPGREGKRMGYLVLLCQTVYTNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQ 593
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ A+E FR V FL+ATD+A+RGLDI GV++VINY P+ Y+HRVGRTARAGR
Sbjct: 594 EQRIHAVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGR 653
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A T + DR ++KA K G+K+ SRIV +W+ +E+M+ ++ IL+E
Sbjct: 654 SGRACTIAAEPDRKIVKAAVKAGRAQGAKIVSRIVDPNVADEWAIKVEEMQSEIEDILKE 713
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E+ E+ L +AEM+ T+ N+I H++EI +RPKRTWF TE+EKK +A ++ + G G
Sbjct: 714 EKAEKHLAQAEMQVTRGHNLIKHEDEIMSRPKRTWFETEREKK---EAKNRALSELNGPG 770
Query: 584 NEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAR 621
+ + KEKRK L KE++KL+ R
Sbjct: 771 SVLK----------KEKRK------LSGKEKKKLDDTR 792
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/562 (46%), Positives = 374/562 (66%), Gaps = 25/562 (4%)
Query: 79 PIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKS---------------FFAPADGASFH 123
P+ ++ + + DQ + + +DE D ++ D S +FA D S
Sbjct: 121 PLATSEDEEDDADQLSEAELDDETDNASDSDGSSGTEEETQAEKERKAAYFASPDDPSVS 180
Query: 124 A---NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
SF ++LSRPLL+A ALG+S PTPIQ A IP+AL G+D+ G+A+TGSGKTAAF
Sbjct: 181 GQVHTSFTTMSLSRPLLKALTALGFSTPTPIQVATIPVALLGKDVVGNAVTGSGKTAAFM 240
Query: 181 LPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
+P LERL+YR K A+R ++L PTREL VQ + +K++ F D+R L+VGGLS K
Sbjct: 241 IPVLERLMYRERGKNKAAVRCVVLVPTRELGVQCVDVAKKLSAFMDVRISLIVGGLSLKS 300
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR+ PDIV+ATPGR+IDHLRNS S L+ L VLILDEADR+L GF+ E+ E+++
Sbjct: 301 QEAELRTRPDIVIATPGRLIDHLRNSPSFGLETLDVLILDEADRMLSDGFADELKEIIQA 360
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
CP RQTMLFSAT+T+DVD L+++SL +P++L DP L +E VR+R +E +
Sbjct: 361 CPTSRQTMLFSATMTDDVDALVRMSLNRPVKLFVDPKRSTARGLIQEFVRVRAGKEAERA 420
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
A+L++LC +TF VI+F +K+ AH+++++FG+ +KA ELHG+LTQ QRL AL+LFR
Sbjct: 421 ALLVALCKRTFKQGVIVFFRSKKLAHQMRVVFGILGMKAEELHGDLTQEQRLRALQLFRD 480
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VDFL+ATD+A+RGLDI G++ V+NY P L Y+HRVGRTARAG++G +VT V + D
Sbjct: 481 GAVDFLMATDLASRGLDIKGIEAVVNYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEAD 540
Query: 479 RSLLKAIAKRAG--SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
R +LKA K A K++ R + ++ W+K + ++ D++ +L+EE+EE+ LR AE E
Sbjct: 541 RKILKAAIKHASDVDKVRHRTIPSDQVSIWAKRLAEINDEITEVLKEEKEEKALRLAERE 600
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLK 596
K ENMI H++EIF+RP RTWF +EKEK A + K E G+ + S + ++++
Sbjct: 601 LKKGENMIEHEKEIFSRPARTWFQSEKEKLNAKEISKKQYEIAAGATS--PSKGKNKEVQ 658
Query: 597 IKEKRKREREKNLPRK-ERRKL 617
K KR++ L R+ +RRKL
Sbjct: 659 ADAKPKRDKFAGLSRRAKRRKL 680
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/515 (48%), Positives = 349/515 (67%), Gaps = 20/515 (3%)
Query: 112 SFFAPADGAS----FHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+FFAP + + +NS F NLSRP+LR A+G+S PTPIQ IP+ L G+D+
Sbjct: 301 AFFAPEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLV 360
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A +TDI
Sbjct: 361 GGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDIT 420
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 421 FCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED 480
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D TL +E
Sbjct: 481 GFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEF 540
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC+ +T++VI+F K+ AHR +I+FGL LKAAELHG+++Q
Sbjct: 541 VRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQ 600
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ A+E FR V FL+ATD+A+RGLDI GV++VINY P+ Y+HRVGRTARAGR
Sbjct: 601 EQRINAVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGR 660
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A T + DR ++KA K G+K+ SR+V +W+ +E+M+ ++ IL+E
Sbjct: 661 SGRACTIAAEPDRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKE 720
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI------- 576
E+EE+ L +AEM+ + +N+I H+ EI ARPKRTWF TE+EK+ A K + +
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAKKRALSELNGPDSVI 780
Query: 577 --EKGKGSGNE---VTSAQQAEDLKIKEKRKRERE 606
EK K SG E + + E+ KI +K K+ERE
Sbjct: 781 KKEKRKLSGKEKKKLDDNRLREEGKIWKKGKKERE 815
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/515 (48%), Positives = 348/515 (67%), Gaps = 20/515 (3%)
Query: 112 SFFAPADGAS----FHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+FFAP + + +NS F NLSRP+LR A+G+S PTPIQ IP+ L G+D+
Sbjct: 301 AFFAPEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLV 360
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A +TDI
Sbjct: 361 GGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDIT 420
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 421 FCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED 480
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D TL +E
Sbjct: 481 GFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEF 540
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC+ +T++VI+F K+ AHR +I+FGL LKAAELHG+++Q
Sbjct: 541 VRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQ 600
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ A+E FR V FL+ATD+A+RGLDI GV++VINY P+ Y+HRVGRTARAGR
Sbjct: 601 EQRINAVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGR 660
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A T + DR ++KA K G+K+ SR+V +W+ +E+M+ ++ IL+E
Sbjct: 661 SGRACTIAAEPDRKVVKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKE 720
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI------- 576
E+EE+ L +AEM+ + +N+I H EI ARPKRTWF TE+EK+ A K + +
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHGSEIMARPKRTWFETEREKREAKKRALSELNGPDSVI 780
Query: 577 --EKGKGSGNE---VTSAQQAEDLKIKEKRKRERE 606
EK K SG E + + E+ KI +K K+ERE
Sbjct: 781 KKEKRKLSGKEKKKLDDNRLREEGKIWKKGKKERE 815
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/466 (50%), Positives = 331/466 (71%), Gaps = 6/466 (1%)
Query: 111 KSFFAP---ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
K+FFAP + AS SF + NLSRP+LR ++ ++ PTPIQ IP+AL G+DI G
Sbjct: 282 KAFFAPEEKSTAASTSNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVG 341
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
SA+TGSGKTAAF +P LERLL+RP+++P RV IL PTRELAVQ +++ K+A TDI
Sbjct: 342 SAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITF 401
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE G
Sbjct: 402 CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDG 461
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ P+ RQTMLFSAT+T+ VD+LI++ L +P+RL D LT+E V
Sbjct: 462 FADELNEILTTIPQSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFV 521
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + LL LC++ +T +VI+F K+ AHR++I+FGL LKAAELHG+++Q
Sbjct: 522 RLRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQE 581
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR++++E FR+ V FL+ATD+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR
Sbjct: 582 QRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 641
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G A T + DR ++K+ K G+K+ SR+V +W+ + +ED++ +LQEE
Sbjct: 642 GRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEE 701
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
+ E+ + +AEM+ TK ENMI H+ EI +RPKRTWF TE++K+ A K
Sbjct: 702 KLEKQMAQAEMQVTKGENMIKHEAEIMSRPKRTWFETERDKRAARK 747
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/553 (46%), Positives = 361/553 (65%), Gaps = 33/553 (5%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA------NSFMELNLSRP 135
D+ SD + D+ E+E+ K+FFAP + + + SF E NLSRP
Sbjct: 266 DDIASDRDSDEESQVDAEEEEK------RKAFFAPEEEKTSESAMADAKRSFQEFNLSRP 319
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct: 320 ILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 379
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 380 TSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPG 439
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+
Sbjct: 440 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDT 499
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +VI+
Sbjct: 500 VDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIV 559
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ FL+ATD+A+RGLD
Sbjct: 560 FFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLATDLASRGLD 619
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K G+K
Sbjct: 620 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAK 679
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I H+ EI +
Sbjct: 680 IASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKS 739
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRK 612
RPKRTWF TE++KK A K A + G +G + KEK+K L K
Sbjct: 740 RPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK------LSNK 781
Query: 613 ERRKLEAAREMLE 625
++++L+ +R+ E
Sbjct: 782 DKKRLDDSRQRQE 794
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/553 (46%), Positives = 361/553 (65%), Gaps = 33/553 (5%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA------NSFMELNLSRP 135
D+ SD + D+ E+E+ K+FFAP + + + SF E NLSRP
Sbjct: 239 DDIASDRDSDEESQVDAEEEEK------RKAFFAPEEEKTSESAMADAKRSFQEFNLSRP 292
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct: 293 ILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 352
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 353 TSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPG 412
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+
Sbjct: 413 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDT 472
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +VI+
Sbjct: 473 VDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIV 532
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR+ FL+ATD+A+RGLD
Sbjct: 533 FFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLATDLASRGLD 592
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K G+K
Sbjct: 593 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAK 652
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I H+ EI +
Sbjct: 653 IASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKS 712
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRK 612
RPKRTWF TE++KK A K A + G +G + KEK+K L K
Sbjct: 713 RPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK------LSNK 754
Query: 613 ERRKLEAAREMLE 625
++++L+ +R+ E
Sbjct: 755 DKKRLDDSRQRQE 767
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/530 (47%), Positives = 346/530 (65%), Gaps = 15/530 (2%)
Query: 82 DNDH---SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD----GASFHANSFMELNLSR 134
DND ++ D E + D++D +FFAP + G +SF ++LSR
Sbjct: 201 DNDSVATPEAHPDDDELSETSDQEDAEEEAKRVAFFAPEEKPKGGKEAKISSFQAMSLSR 260
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
P+LR +G++KPTPIQ+ IP+AL G+DI G A+TGSGKT AF +P LERLLYRPK+I
Sbjct: 261 PILRGLTNVGFTKPTPIQSKTIPIALMGKDIVGGAVTGSGKTGAFIIPILERLLYRPKKI 320
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
P RV++LTPTRELA+Q H++ K+A TDI+ L VGGLS K+QE LR PD+++ATP
Sbjct: 321 PTTRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKVQEAELRLRPDVIIATP 380
Query: 255 GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 381 GRFIDHMRNSASFPIDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTS 440
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 374
VD LI+L + KP R+ D + TL +E VR+R RE + L LC +T +VI
Sbjct: 441 TVDRLIRLGMNKPARVMVDSQKRTVGTLVQEFVRLRPGRENKRMGYLTHLCKTLYTERVI 500
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F K+ AH +I+F + + AELHG+++Q R+E++E FR V++L+ATD+A+RGL
Sbjct: 501 VFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIESVEAFRDGKVNYLLATDLASRGL 560
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GS 491
DI GV TVINY P+ L YVHRVGRTARAGR+G A+T ++DR ++KA K G+
Sbjct: 561 DIRGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKVVKAAVKAGKAQGA 620
Query: 492 KLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIF 551
K+ SRIV + K I+ ME ++ I++EE+EE+ +AEM+ K ENMI H+ EI
Sbjct: 621 KVTSRIVEAEKADKLQAEIDGMEQEIKEIMREEKEEKHFAQAEMQVRKGENMIEHEAEIK 680
Query: 552 ARPKRTWFVTEKEKKLAVKADKASIEKGKGS-----GNEVTSAQQAEDLK 596
+RPKRTWF TE EK A +A K + + S GN ++ D+K
Sbjct: 681 SRPKRTWFETEHEKGKAKEAGKTELNGPRQSSKKKLGNASNKVKKQLDIK 730
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/519 (49%), Positives = 354/519 (68%), Gaps = 25/519 (4%)
Query: 111 KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFAP + +SF E++LSRP+LR ++G++KPTPIQA IP++L G+D+
Sbjct: 275 KEFFAPEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVV 334
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 335 GGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIK 394
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 395 FCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLED 454
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI+ L KP+R+ AD K TL +E
Sbjct: 455 GFADELNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEF 514
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE +E LL +C +T +VIIF K+ AH+++I+FGL L AELHG++ Q
Sbjct: 515 VRLRPGRESKREGYLLHICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQ 574
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQR++++E FR V+FL+ATD+A+RGLDI GV TVINY P+ YVHRVGRTARAGR
Sbjct: 575 AQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGR 634
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR ++KA K G+K+ SRI+ KW I+++ED++ I+QE
Sbjct: 635 SGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQE 694
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E+EE+ L+ EM+ K ENMI +++EI +RPKRTWF T+++KK A A +A +
Sbjct: 695 EKEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQEDKKKAKAAGRAELN------ 748
Query: 584 NEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAARE 622
+++K K + E L K+R+KL+ +E
Sbjct: 749 ------------GVRDKLKSKNEGKLSNKDRKKLDTMQE 775
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/466 (50%), Positives = 330/466 (70%), Gaps = 6/466 (1%)
Query: 111 KSFFAPAD---GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
K+FFAP + S SF + NLSRP+LR ++ ++ PTPIQ IP+AL G+DI G
Sbjct: 293 KAFFAPEEKSTAVSTFNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVG 352
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
SA+TGSGKTAAF +P LERLL+RP+++P RV IL PTRELAVQ +++ K+A TDI
Sbjct: 353 SAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITF 412
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE G
Sbjct: 413 CQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDG 472
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D LT+E V
Sbjct: 473 FADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFV 532
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + LL LC++ +T +VI+F K+ AHR++I+FGL LKAAELHG+++Q
Sbjct: 533 RLRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQE 592
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR++++E FR+ V FL+ATD+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR
Sbjct: 593 QRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 652
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G A T + DR ++K+ K G+K+ SR+V +W+ + +ED++ +LQEE
Sbjct: 653 GRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEE 712
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
+ E+ + +AEM+ TK EN+I H+ EI +RPKRTWF TE++K+ A K
Sbjct: 713 KLEKQMAQAEMQVTKGENLIKHEAEIMSRPKRTWFETERDKRAARK 758
>gi|393240212|gb|EJD47739.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 778
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/467 (50%), Positives = 328/467 (70%), Gaps = 15/467 (3%)
Query: 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
+FFA A+SF+ +NLSRP+L+A AL + PTPIQA+ IP+AL G+DI G+A+T
Sbjct: 160 AFFAEPSSHEPAADSFLSMNLSRPILKALTALNFHTPTPIQASTIPVALLGKDIVGNAVT 219
Query: 172 GSGKTAAFALPTLERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
GSGKTAAF +P LERLLYR K A R +IL PTRELAVQ + K+A TD+R CL
Sbjct: 220 GSGKTAAFVIPMLERLLYRDKSKNAAATRCVILVPTRELAVQCFDVATKLAAHTDVRFCL 279
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+VGGLS K QE +LR PD+V+ATPGR+IDHLRN+ LD + +L+LDEADR+L GF+
Sbjct: 280 IVGGLSVKAQEASLRLRPDVVIATPGRLIDHLRNAPQFGLDAVDILVLDEADRMLSDGFA 339
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+V+ CP+ RQTMLFSAT+T+ VDEL+K+SL KP+RL D +L +E VR+
Sbjct: 340 DELAEIVQACPRGRQTMLFSATMTDSVDELVKMSLNKPVRLFVDAKRTTARSLVQEFVRV 399
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R RE ++ +L +LC +TF ++ IIF +K+ AH++++ F L L A ELHG+LTQ QR
Sbjct: 400 R--REEDRGGMLAALCKRTFKARAIIFFRSKKLAHQMRVAFALLNLNAGELHGDLTQEQR 457
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L +L+ FR +DFL+ATD+A+RGLDI GV+ VINY P L Y+HRVGRTARAG G
Sbjct: 458 LRSLQQFRDGQIDFLMATDLASRGLDIKGVEVVINYDMPGQLAQYLHRVGRTARAGARGR 517
Query: 470 AVTFVTDNDRSLLKAIAKRAGS-----------KLKSRIVAEQSITKWSKIIEQMEDQVA 518
+VT V ++DR +LKA K + + ++ R+V ++ KW+ + ++D++
Sbjct: 518 SVTLVGESDRKMLKAAIKHSANASKDDADKVDETVRHRVVPPDALAKWTAALADLKDEIV 577
Query: 519 AILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+L EE+EE+ +R+AEM+ K ENMI H++EIF+RP RTWF +EK+K
Sbjct: 578 RVLAEEKEEKAIRQAEMQIKKGENMIEHEKEIFSRPARTWFQSEKDK 624
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/496 (50%), Positives = 345/496 (69%), Gaps = 6/496 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LE
Sbjct: 183 TFEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILE 242
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL+R AIRVL+L PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR
Sbjct: 243 RLLFRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRK 302
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDHL N+ + L+DL +LILDEADRLL++GF EI+++V CP RQT
Sbjct: 303 RPDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQT 362
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSATL ++V L KLSL +P+R+ D + STL +E V+I+ ++ A+L+SLC
Sbjct: 363 MLFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLC 422
Query: 366 SKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ F T IIF +K+ HRL I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L
Sbjct: 423 TRVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYL 482
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+A+DVA+RGLDIIGV+TVINY P L Y+HRVGRTARAG EG + +F+T+NDR +LK
Sbjct: 483 LASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKE 542
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I +A +K KSR V++ ++ W IE++ + + I+++E +E LRKAE KAE +I
Sbjct: 543 IVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIREIVRDELKEADLRKAEKALDKAEKVI 602
Query: 545 AHKEEIFARPKRTWFVT----EKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEK 600
+ E +R W+ T EK K+L + ++ K + + T A +K K K
Sbjct: 603 SKPFEENTETERVWYKTKSEEEKSKELWKLENGIGLKPLKSNAIDTTGASNVPSIK-KLK 661
Query: 601 RKREREKNLPRKERRK 616
+K++ L RK+RR+
Sbjct: 662 QKKDPYYGLSRKQRRQ 677
>gi|380487114|emb|CCF38253.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 777
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/541 (46%), Positives = 361/541 (66%), Gaps = 30/541 (5%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G A+SF ++LSRPLLR A+G+SKPTPIQA +P+AL G+D+ G
Sbjct: 235 AFFAPEEPAKPGKKDTASSFQAMSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVG 294
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A +TDI+
Sbjct: 295 GAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKF 354
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE LR PD+++ATPGR IDH+RNS S ++D + +L+LDEADR+LE G
Sbjct: 355 TLAVGGLSLKAQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDG 414
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEV 346
F+ E++E++ PK RQTMLFSAT+T VD+L+++ + KP R+ D + TL +E
Sbjct: 415 FADELNEILTTLPKSRQTMLFSATMTSSVDKLVRVGMNKPARVMVDSQKNKTVGTLVQEF 474
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ +C T +VI+F K+ AHR +I+FGL + AELHG++ Q
Sbjct: 475 VRLRPGREDKRMGYLVHICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQ 534
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQR+ ++E FR V++L+ATD+A+RGLDI GV TVINY P+++ YVHRVGRTARAGR
Sbjct: 535 AQRIASVENFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGR 594
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR ++KA K G+K+ SR++ KW +++MED++ I+ E
Sbjct: 595 TGIAITLAAEPDRKVVKAAVKAGKAQGAKIMSRVIEPTEADKWQAQVDEMEDEIEEIMVE 654
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E++E+ +AEM+ K EN++ H+ EI RPKRTWF TE++KK A +A + + KG
Sbjct: 655 EKQEKQFAQAEMQVRKGENILQHEAEIKGRPKRTWFETEQDKKKAKEAGRDELNGPKGKK 714
Query: 584 NEVTSAQ---------QAEDLKIKEKR-------------KREREKNLPRKERRKLEAAR 621
++++ ++ED K+ R K+ ++KN+P K R + + AR
Sbjct: 715 QKLSNKDKKKLDAKAMRSEDKVWKKGRAERAGQGAVLNLKKQPKKKNVPAKGRTRAKLAR 774
Query: 622 E 622
E
Sbjct: 775 E 775
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/519 (49%), Positives = 354/519 (68%), Gaps = 25/519 (4%)
Query: 111 KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFAP + +SF E++LSRP+LR ++G++KPTPIQA IP++L G+D+
Sbjct: 275 KEFFAPEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVV 334
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 335 GGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIK 394
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 395 FCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLED 454
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI+ L KP+R+ AD K TL +E
Sbjct: 455 GFADELNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEF 514
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE +E LL +C +T +VIIF K+ AH+++I+FGL L AELHG++ Q
Sbjct: 515 VRLRPGRESKREGYLLHICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQ 574
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQR++++E FR V+FL+ATD+A+RGLDI GV TVINY P+ YVHRVGRTARAGR
Sbjct: 575 AQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGR 634
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR ++KA K G+K+ SRI+ KW I+++ED++ I+QE
Sbjct: 635 SGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADADKWQAEIDELEDEIEEIMQE 694
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E+EE+ L+ EM+ K ENMI +++EI +RPKRTWF T+++KK A A +A +
Sbjct: 695 EKEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQEDKKKAKAAGRAELN------ 748
Query: 584 NEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAARE 622
+++K K + E L K+R+KL+ +E
Sbjct: 749 ------------GVRDKLKSKNEGKLSNKDRKKLDTMQE 775
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/522 (49%), Positives = 353/522 (67%), Gaps = 23/522 (4%)
Query: 111 KSFFAPADGASFHA-------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
K+FFAP + AS SF NLSRP+LR A+G++KPTPIQ IP+AL G+
Sbjct: 290 KAFFAPEEPASADKDADDAAHGSFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGK 349
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+ G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A +T
Sbjct: 350 DVVGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYT 409
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
DI C ++GG S + QE L+ PDI++ATPGR IDH+RNS S +D L +L+LDEADR+
Sbjct: 410 DITFCQLIGGFSLREQENVLKKRPDIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRM 469
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LE GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D + TL
Sbjct: 470 LEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLV 529
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VR+R RE + A L+ LC + + ++VIIF K+ AHR++++FGL LKAAELHG+
Sbjct: 530 QEFVRLRPGREDKRLASLIHLCQQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGS 589
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTAR
Sbjct: 590 MSQEQRIKSVEDFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTAR 649
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A T D DR +++A K G+K+ SR++ + K ++ IE + D+V AI
Sbjct: 650 AGRSGRACTLAADPDRKVVRAAVKAGKTQGAKIVSRVIGSEIQDKLAEEIEGLRDEVDAI 709
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK---------- 570
L+EE+EE+ L + EM+ +K EN++ H+ EI +RPKRTWF TEKEK+ A K
Sbjct: 710 LREEKEEKELAQVEMQTSKGENLLKHQTEIMSRPKRTWFETEKEKQEAQKRGLIELNGLD 769
Query: 571 ADKASIEKGKGSGNEVTSAQQAEDLK---IKEKRKREREKNL 609
A + EK K SG E D K + +K K+ERE N+
Sbjct: 770 ASLSKKEKRKLSGKEKKRLDDTRDRKEGRMWKKGKKERESNI 811
>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 772
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 253/540 (46%), Positives = 359/540 (66%), Gaps = 30/540 (5%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G ++SF ++LSRPLLR A+G+SKPTPIQA IP+AL G+D+ G
Sbjct: 230 AFFAPEEPAKPGKKDTSSSFQAMSLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVG 289
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKT AF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A +TDI+
Sbjct: 290 GAVTGSGKTGAFVVPILERLLYRPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKF 349
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE LR PD+++ATPGR IDH+RNS S ++D + +L+LDEADR+LE G
Sbjct: 350 TLAVGGLSLKAQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDG 409
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEV 346
F+ E++E++ PK RQTMLFSAT+T VD+L++L + KP R+ D + TL +E
Sbjct: 410 FADELNEILTTLPKSRQTMLFSATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEF 469
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ +C T +VI+F K+ AHR +I+FGL + AELHG++ Q
Sbjct: 470 VRLRPGREEKRMGYLVHICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQ 529
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQR+ ++E FR V++L+ATD+A+RGLDI GV TVINY P+++ YVHRVGRTARAGR
Sbjct: 530 AQRIASVENFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGR 589
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR ++KA K G+K+ SRI+ KW +++MED++ I+ E
Sbjct: 590 TGIAITLAAEPDRKVVKAAVKAGKAQGAKIMSRIIEPAEADKWQAQVDEMEDEIEEIMVE 649
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E++E+ +AEM+ K EN++ H+ EI ARPKRTWF TE++KK A +A + + KG
Sbjct: 650 EKQEKQFAQAEMQVRKGENILQHEAEIKARPKRTWFETEQDKKKAKEAGREELNGPKGKK 709
Query: 584 NEVTSAQ---------QAEDLKIKEKR-------------KREREKNLPRKERRKLEAAR 621
++++ ++ED K+ R K+ ++KN+P K R + AR
Sbjct: 710 QKLSNKDKKKLDAKAMRSEDKVWKKGRAERAGQGAVLNLKKQPKKKNVPAKGRTRARLAR 769
>gi|346978687|gb|EGY22139.1| ATP-dependent RNA helicase DRS1 [Verticillium dahliae VdLs.17]
Length = 748
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/533 (48%), Positives = 353/533 (66%), Gaps = 17/533 (3%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTK------SFFAPAD----GASFHANSFMELN 131
DND + D +D E DFS+ D + +FFAP + G ANSF ++
Sbjct: 170 DNDSIATPVDHPDDV----ESDFSDDEDPEEKAKRDAFFAPEEVAKPGKKAAANSFQAMS 225
Query: 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191
LSRP+LR + ++KPTPIQ IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRP
Sbjct: 226 LSRPILRGLAGVSFTKPTPIQQKTIPIALMGKDLVGGAVTGSGKTAAFVVPILERLLYRP 285
Query: 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 251
K++P RV+ILTPTRELA+Q HS+ K+A +TDI+ L VGGLS KMQE LR PD+++
Sbjct: 286 KKVPTSRVVILTPTRELAIQCHSVATKLAAYTDIKFTLAVGGLSLKMQEAELRLRPDVII 345
Query: 252 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311
ATPGR IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT
Sbjct: 346 ATPGRFIDHMRNSASFAVDAVEILVLDEADRMLEDGFADELNEILTSMPKSRQTMLFSAT 405
Query: 312 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371
+T VD LI++ + P R+ D K +TLT+E +R+R RE + LL +C +T
Sbjct: 406 MTSSVDRLIRVGMNTPARVMVDSQKKTVTTLTQEFIRLRPGRESKRMGYLLFICKTLYTE 465
Query: 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
+VIIF K+ AHR +I+FGL L AELHG++ Q QR++++E FR V +L+ATD+A+
Sbjct: 466 RVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSYLLATDLAS 525
Query: 432 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA-- 489
RGLDI G+ TVINY P+ L YVHRVGRTARAGR G AVT + DR ++KA K
Sbjct: 526 RGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVVKAAVKAGKA 585
Query: 490 -GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 548
G+K+ SR++ KW +++ME+++ I +EE+EER L + EM+ K EN+I H++
Sbjct: 586 QGAKILSRVIEAGEADKWQDKVDEMEEEIEEINEEEKEERQLAQVEMQVRKGENLINHED 645
Query: 549 EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
EI +RP+RTWF +EK+KK A +A +A + K + +D K E R
Sbjct: 646 EIKSRPRRTWFESEKDKKSAKEAGRAELNGDKNEKKKGGGKMSNKDKKKAESR 698
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 259/543 (47%), Positives = 361/543 (66%), Gaps = 24/543 (4%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHAN-----SFMELNLSRPLLRACEALGYSKPTPIQA 153
E +DD A +FFAP + + A SF ++LSRP+ R A G+S PTPIQA
Sbjct: 232 ESDDDVEEAARRDAFFAPEEKSEKTATKGEVLSFQNMSLSRPIHRGLAACGFSAPTPIQA 291
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P RV IL PTRELA+Q H
Sbjct: 292 KTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTRELAIQCH 351
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273
++ K+A +TDI+ CL VGGLS K+QE LR PDI++ATPGR IDH+RNS S +D L
Sbjct: 352 AVATKLASYTDIKFCLAVGGLSLKIQEAELRLRPDIIIATPGRFIDHMRNSPSFTVDTLE 411
Query: 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333
+L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD+LI++ L +P+RL D
Sbjct: 412 ILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTSSVDKLIRVGLNRPVRLMVD 471
Query: 334 PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA 393
+TL +E VR+R RE + LL LC K F +KVI+F K+ AHR +++FGL+
Sbjct: 472 AQRSTVTTLVQEFVRLRPGREDKRMGYLLYLCQKVFHNKVIVFFRQKKEAHRARVIFGLS 531
Query: 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTS 453
+KAAELHG+L+Q QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L
Sbjct: 532 GMKAAELHGSLSQEQRIASVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEI 591
Query: 454 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKII 510
Y+HRVGRTARAGR G A T + DR ++KA K A G+K+ SR++ ++ +
Sbjct: 592 YLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTARSQGAKIASRVIESNDADAFAAKV 651
Query: 511 EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
M +++ +L+EE+E++ L +AEM+ K EN++ H++EI +RPKRTWF +E +K+ A K
Sbjct: 652 YGMAEEIEEVLKEEKEDKQLAQAEMQLRKGENVMVHEDEIKSRPKRTWFESEADKRTAKK 711
Query: 571 ADKASIE----------KGKGSGNEVTSAQQAE---DLKIKEKRKREREKN---LPRKER 614
+ +A + KGK SG + E + K+ +K + ERE P+K +
Sbjct: 712 SGRAELNGPESILKKSIKGKMSGKDRKKLDDHESRTEGKVWKKGRAEREGKGALAPQKGK 771
Query: 615 RKL 617
RK+
Sbjct: 772 RKV 774
>gi|392578431|gb|EIW71559.1| hypothetical protein TREMEDRAFT_27480 [Tremella mesenterica DSM
1558]
Length = 786
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 278/555 (50%), Positives = 367/555 (66%), Gaps = 24/555 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDT-------KSFFA--PADGASFHANSFMELNL 132
D++ SE Q DED S+ DT +FFA P + SF +NL
Sbjct: 155 DDEGEVSEGGQDSHNADNDEDSDSSEKDTAAEVARKNAFFAADPTTDPTL-PTSFSTMNL 213
Query: 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR-- 190
SRPLLRA +L PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LERL YR
Sbjct: 214 SRPLLRALTSLNLITPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLTYRER 273
Query: 191 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQETALRSMPD 248
+ A RVLIL PTRELAVQ +K++ +IR L+VGGLS Q LR++PD
Sbjct: 274 GRGGQACRVLILCPTRELAVQCEEFGKKLSTQGGLNIRFALLVGGLSLNAQAQNLRTLPD 333
Query: 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308
I++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E++E+VR CP+ RQTMLF
Sbjct: 334 ILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELNEIVRSCPRGRQTMLF 393
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+T+ VDEL+KLSL KP+RL DP LT+E VRI+ + + LL+LC +T
Sbjct: 394 SATMTDSVDELVKLSLDKPIRLFVDPKRNTAIGLTQEFVRIKS--DDTRSPSLLALCKRT 451
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
+ IIF +K AH+++++FGL LKAAELHGNL+Q QRL ALE F+ VD+L+ATD
Sbjct: 452 VRERCIIFFRSKALAHQMRVVFGLCGLKAAELHGNLSQEQRLHALEEFKLGKVDYLLATD 511
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G ++T V + DR LLKA+ K+
Sbjct: 512 LASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSITLVGEADRKLLKAVIKQ 571
Query: 489 A-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHK 547
+ +++ RI+ +++T SK +++M+D++ +L+EE+EE+ LR+A+ME TK ENMIAH+
Sbjct: 572 SEADEIRHRIIPSEAVTAMSKTLDEMKDEIQEVLKEEKEEKALRQADMEITKGENMIAHE 631
Query: 548 EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK 607
EEIF+RP RTWF +EKEK + A KA+ G S + + K K KR
Sbjct: 632 EEIFSRPARTWFQSEKEKLASKNAGKAAYTSGFPSDPKTEKEE-------KTKLKRGIYD 684
Query: 608 NLPRKERRKLEAARE 622
L RK +R+ A +E
Sbjct: 685 GLSRKTKRRRIAMKE 699
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/444 (52%), Positives = 322/444 (72%), Gaps = 3/444 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++ LSRP+LR +L + PTPIQ+ IP+AL G+DI G+A+TGSGKTAAF +P LE
Sbjct: 232 SFQDMKLSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPILE 291
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+YRPK+IP RVLI+ PTRELA+Q H++ ++IA FTDI CL VGGLS K+QE LR
Sbjct: 292 RLVYRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQELRK 351
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR IDH+RNS +D++ ++++DEADR+LE GF+ E++E+V+LCPK RQT
Sbjct: 352 RPDIIIATPGRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKSRQT 411
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+TE VD+L++LSL +P+R+ D L +E +R+R RE + A+L+ +C
Sbjct: 412 MLFSATMTEKVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLVHIC 471
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
F +VIIF K AH+++I+FGL L A E+HG+L+Q QR+ ALE FR VD+L+
Sbjct: 472 KTFFHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDYLL 531
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI GV+ VINY P Y+HRVGRTARAGR G A++ V +NDR ++K +
Sbjct: 532 ATDVASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKVIKDV 591
Query: 486 AKRAGSK---LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K + ++ + SR + + K +E++ED V +++EE++ER ++ AE + K EN
Sbjct: 592 LKSSENQHDNVVSRNLDFPRVEAIGKELEELEDTVKQVMEEEKQERHIKIAERDLKKGEN 651
Query: 543 MIAHKEEIFARPKRTWFVTEKEKK 566
++ H++EI ARP RTWF TEKEKK
Sbjct: 652 ILKHQDEIKARPARTWFQTEKEKK 675
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/510 (50%), Positives = 346/510 (67%), Gaps = 13/510 (2%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G A+SF ++LSRP++R A+G++KPTPIQA IP+AL G+D+ G
Sbjct: 228 AFFAPEEKEKSGKKVDASSFQVMSLSRPIMRGITAVGFTKPTPIQAKTIPIALMGKDVVG 287
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF LP LERLLYRPK+IP RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 288 GAVTGSGKTAAFVLPILERLLYRPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKF 347
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QET LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 348 TLAVGGLSLKAQETELRLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDG 407
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD LIK+ L KP+R+ D K TL +E V
Sbjct: 408 FADELNEILTTLPKSRQTMLFSATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLIQEFV 467
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L +C +T KVIIF K+ AHR +I+FGL AELHG++ Q
Sbjct: 468 RLRPGREEKRMGYLAHICKNFYTEKVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQT 527
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ + YVHRVGRTARAGR
Sbjct: 528 QRIASVENFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRT 587
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G +VT + DR ++KA K GSK+ SRI+ + KW I++M+D++ I +EE
Sbjct: 588 GISVTLAAEPDRKVVKAAVKAGKAQGSKIISRIIEAKDADKWQAEIDEMDDEIEEIEKEE 647
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA------SIEK 578
+EER L + EM+ K+EN+I H++EI ARPKRTWF T+ +K A KA K S +K
Sbjct: 648 KEERQLAQVEMQIKKSENIIKHEDEIKARPKRTWFETQHDKDNAKKAGKEELNGPRSAKK 707
Query: 579 GKGSGNEVTSAQQAEDLKIKEKRKREREKN 608
GS ++ DLK++ +E +K+
Sbjct: 708 KAGSTKLSNKDKKRADLKMQRAEGKEWKKS 737
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/556 (47%), Positives = 365/556 (65%), Gaps = 45/556 (8%)
Query: 82 DNDH-SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAP--------ADGASFHANSFMELNL 132
DND ++SE D E K K+FFAP ADGA SF E NL
Sbjct: 267 DNDSDAESEIDAEEQEK------------RKAFFAPEEEKTKEQADGAQ---RSFQEFNL 311
Query: 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 192
SRP+LR A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+
Sbjct: 312 SRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPR 371
Query: 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVA 252
++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++A
Sbjct: 372 KVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIA 431
Query: 253 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312
TPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+
Sbjct: 432 TPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATM 491
Query: 313 TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSK 372
T+ VD+LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +
Sbjct: 492 TDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGR 551
Query: 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432
VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATD+A+R
Sbjct: 552 VIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLLATDLASR 611
Query: 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--- 489
GLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K +
Sbjct: 612 GLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQ 671
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 549
G+K+ SR+V +W+K +E+++ +L+EE+ E+ L +AEM+ TK EN+I H+ E
Sbjct: 672 GAKVASRVVDPAVADQWAKKAADLEEEINEVLEEEKTEKQLAQAEMQVTKGENLIKHEAE 731
Query: 550 IFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNL 609
I +RPKRTWF +EK+K+ A K A + G +G L KEK K L
Sbjct: 732 IMSRPKRTWFESEKDKRAARKLGAAQL-NGPDAG-----------LSKKEKVK------L 773
Query: 610 PRKERRKLEAAREMLE 625
K++++L+ AR+ LE
Sbjct: 774 SNKDKKRLDDARQRLE 789
>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
gi|74701966|sp|Q4P9P3.1|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
Length = 932
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/487 (51%), Positives = 333/487 (68%), Gaps = 34/487 (6%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF +LSRP+LRA +L + KPTPIQ+ IP+AL G+DI A+TGSGKTAAF +PT+
Sbjct: 333 SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI 392
Query: 185 ERLLYRPK-RIP---AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
ERL +R K R P RVLIL PTRELA+Q +S+ + IA+FTDIR CL VGGLS K QE
Sbjct: 393 ERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQE 452
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
L+ P++V+ATPGR+IDH+RNS S LDD+ +L++DEADR+LE GF+ E++E+V+ CP
Sbjct: 453 AELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCP 512
Query: 301 KR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR--------- 350
K RQTMLFSAT+T+DV++L++LSL +P+RL DP L +E VR+R
Sbjct: 513 KGARQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAG 572
Query: 351 -------------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391
+ + + A+LLSLC++TFTS+ +IF +K+ AH+LKI+FG
Sbjct: 573 ADGLSGIQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFG 632
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
L L A ELHG+L+Q QR++AL FR DFL+ATD+A+RGLDI GVQTVINY P
Sbjct: 633 LLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQF 692
Query: 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLK-AIAKRAGSKLKSRIVAEQSITKWSKII 510
+Y+HRVGRTARAGR G AVT V + DR +LK AI K + ++K RI+ + +
Sbjct: 693 EAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETL 752
Query: 511 EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
E+++ +V A+L+EE+EE+ LR AEME K ENM H +EIF+RPKRTWF + EK A
Sbjct: 753 ERLKPEVDAVLREEKEEKALRIAEMELKKGENMANHADEIFSRPKRTWFQSGSEKTQASA 812
Query: 571 ADKASIE 577
KA +
Sbjct: 813 LSKAGYQ 819
>gi|429859431|gb|ELA34212.1| ATP-dependent RNA helicase drs1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 772
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/479 (50%), Positives = 334/479 (69%), Gaps = 7/479 (1%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G A+SF ++LSRPLLR A+G+SKPTPIQA +P+AL G+D+ G
Sbjct: 232 AFFAPEEPAQPGKKDIASSFQGMSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVG 291
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A +TDI+
Sbjct: 292 GAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILTPTRELAIQCHAVATKLAAYTDIKF 351
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE LR PD+++ATPGR IDH+RNS S ++D + +L+LDEADR+LE G
Sbjct: 352 TLAVGGLSLKQQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDG 411
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD L+++ + KP R+ D K TL +E +
Sbjct: 412 FADELNEILTTLPKSRQTMLFSATMTSSVDRLVRVGMNKPARVMVDSQKKTVGTLVQEFI 471
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L+ +C T +VIIF K+ AHR +I+FG+ + AELHG++ QA
Sbjct: 472 RLRPGREEKRMGYLIHICKTMHTERVIIFFRQKKEAHRARIIFGMLGMSCAELHGSMNQA 531
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR+ ++E FR V++L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR
Sbjct: 532 QRIASVENFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQKLEIYVHRVGRTARAGRS 591
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G AVT + DR ++KA K G+K+ SR++ KW +++MED++ I+ EE
Sbjct: 592 GVAVTLAAEPDRKVVKAAVKAGKSQGAKIMSRVIEPAEADKWQAQVDEMEDEIEEIIVEE 651
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
++E+ +AEM+ K EN++ H+ EI +RPKRTWF TE++KK A A +A + G G
Sbjct: 652 KQEKQFAQAEMQVRKGENILEHEAEIKSRPKRTWFETEQDKKKAKDAGRAELNGEGGPG 710
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/479 (50%), Positives = 337/479 (70%), Gaps = 11/479 (2%)
Query: 111 KSFFAPADGASFH-----ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
KSFFAP + AS + A SF +LSRP+LR ++G++ PTPIQ IP+AL G+D+
Sbjct: 285 KSFFAPEEKASANGDLKSAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDV 344
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV+IL PTRELAVQ +++ K+A FTDI
Sbjct: 345 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDI 404
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 405 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 464
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+RL D + TL +E
Sbjct: 465 DGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQE 524
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VR+R RE + L+ LC + +VI+F +K+ AHR++I+FGL LK ELHG+++
Sbjct: 525 FVRLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMS 584
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAG
Sbjct: 585 QEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 644
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K G+K+ SR++ KW+ +E+M+++V IL+
Sbjct: 645 RSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILR 704
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+EE+ L +AEME T+ N++ H +EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 705 EEKEEKQLAQAEMEVTRGSNLLNHDKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 760
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/525 (48%), Positives = 356/525 (67%), Gaps = 28/525 (5%)
Query: 111 KSFFAPADGASFHAN-------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
K+FFAP + AS + SF NLSRP+LR A+G++KPTPIQ IP+AL G+
Sbjct: 283 KAFFAPEEPASAEKDADDAANGSFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGK 342
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+ G A+TGSGKT AF +P LERLLYR +++P RV IL PTRELAVQ ++ K+A +T
Sbjct: 343 DVVGGAVTGSGKTGAFIIPILERLLYRQRKVPTSRVAILMPTRELAVQCFNVATKLATYT 402
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
DI C ++GG S + QE L+ PDI++ATPGR IDH+RNS S +D L +L+LDEADR+
Sbjct: 403 DITFCQLIGGFSLREQENILKKRPDIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRM 462
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LE GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D + TL
Sbjct: 463 LEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLV 522
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VR+R RE + A L+ LC + +TS+VIIF K+ AHR++++FGL LKAAELHG+
Sbjct: 523 QEFVRLRPGREDKRLASLIHLCQQVYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGS 582
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTAR
Sbjct: 583 MSQEQRIKSVEDFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTAR 642
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A T D DR +++A K G+K+ SR++ + + + IE ++D++ AI
Sbjct: 643 AGRSGRACTLAADPDRKVVRAAVKAGKTQGAKIISRVIGSEIQDELATEIEDLQDEIDAI 702
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGK 580
L+EE+EE+ L + EM+ +K EN++ H+ EI +RPKRTWF TEKEK+ A K +G
Sbjct: 703 LREEKEEKELAQVEMQTSKGENLLKHQTEIMSRPKRTWFETEKEKQEAQK-------RGL 755
Query: 581 GSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
N + ++ L KEKRK L KE++KL+ R+ E
Sbjct: 756 IELNGLDAS-----LSKKEKRK------LSGKEKKKLDDTRDRKE 789
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/461 (52%), Positives = 323/461 (70%), Gaps = 12/461 (2%)
Query: 111 KSFFA-------PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
K FFA PA +SF++L LSRPLLRA ++G+ +PTPIQA IP+AL G+
Sbjct: 213 KEFFAAPEETEKPAKKGKL--SSFLDLPLSRPLLRALTSVGFDEPTPIQAKTIPIALMGK 270
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+ G A+TGSGKTAAF +P LERLL+RP ++P RV+ILTPTRELA+Q H++ K+A+FT
Sbjct: 271 DVVGGAVTGSGKTAAFMVPILERLLHRPNKVPTTRVVILTPTRELAMQCHAVATKLARFT 330
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
DI+ CL GGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+
Sbjct: 331 DIKFCLAAGGLSRKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDRVEILVLDEADRM 390
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L KP+R+ D TLT
Sbjct: 391 LEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRIMVDSQKATAGTLT 450
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VR+R RE + L+ +C +T +VIIF K+ AHR +I+FGL L AELHG+
Sbjct: 451 QEFVRLRPGREEKRMGYLVHICKTLYTKRVIIFFRQKKVAHRARIIFGLLGLSCAELHGS 510
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q QR+ ++E FR VD+L+ATD+A+RGLDI V TVINY P++L YVHRVGRTAR
Sbjct: 511 MSQTQRIGSVEDFRDGKVDYLLATDLASRGLDIKRVDTVINYEAPQNLEIYVHRVGRTAR 570
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A+T + DR ++KA K GSK+ SR++ KW +++ME+ + A+
Sbjct: 571 AGRSGVAITLAAEPDRKVVKAAVKAGKAQGSKIVSRVIDPGDADKWQAQVDEMEEDIEAV 630
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVT 561
L+EE EER L EM+ K EN+I H+EEI +RPKRTWF T
Sbjct: 631 LREEEEERQLAHVEMQVKKGENLIKHEEEIHSRPKRTWFET 671
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/496 (48%), Positives = 344/496 (69%), Gaps = 11/496 (2%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFH-----ANSFMELNLSRPLLRACEALGYSKP 148
+D ++ +D + KSFFAP + AS + A SF +LSRP+LR ++G++ P
Sbjct: 269 DDGSGDESEDAAEIEKQKSFFAPEEKASANGDLKSAKSFQAFSLSRPILRGLTSVGFTTP 328
Query: 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208
TPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP+++P RV IL PTREL
Sbjct: 329 TPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTREL 388
Query: 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVD 268
AVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPGR IDH+RNS S
Sbjct: 389 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 448
Query: 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328
+D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+
Sbjct: 449 VDTLEILVLDEADRMLEDGFTDELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPV 508
Query: 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388
RL D + TL +E VR+R RE + L+ LC + +VI+F +K+ AHR++I
Sbjct: 509 RLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRI 568
Query: 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448
+FGL LK ELHG+++Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P
Sbjct: 569 IFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAP 628
Query: 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITK 505
+ Y+HRVGRTARAGR G A T + DR ++KA K G+K+ SR++ K
Sbjct: 629 QSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAEADK 688
Query: 506 WSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
W+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H++EI +RPKRTWF +EKEK
Sbjct: 689 WAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHEKEIMSRPKRTWFESEKEK 748
Query: 566 KLAVKADKASIEKGKG 581
++A + S+E+ G
Sbjct: 749 ---LQAKQRSLEELNG 761
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/479 (50%), Positives = 336/479 (70%), Gaps = 11/479 (2%)
Query: 111 KSFFAPADGASFH-----ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
KSFFAP + AS + A SF +LSRP+LR +G++ PTPIQ IP+AL G+D+
Sbjct: 285 KSFFAPEEKASANGDLKSAKSFQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDV 344
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV+IL PTRELAVQ +++ K+A FTDI
Sbjct: 345 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVVILMPTRELAVQCYNVATKLATFTDI 404
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 405 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 464
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+RL D + TL +E
Sbjct: 465 DGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQE 524
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VR+R RE + L+ LC + +VI+F +K+ AHR++I+FGL LK ELHG+++
Sbjct: 525 FVRLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMS 584
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAG
Sbjct: 585 QEQRIKSVEGFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 644
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K G+K+ SR++ KW+ +E+M+++V IL+
Sbjct: 645 RSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILR 704
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+EE+ L +AEME T+ N++ H +EI +RPKRTWF +EKEK ++A + S+E+ G
Sbjct: 705 EEKEEKQLAQAEMEVTRGSNLLNHDKEIMSRPKRTWFESEKEK---LQAKQRSLEELNG 760
>gi|340518289|gb|EGR48530.1| predicted protein [Trichoderma reesei QM6a]
Length = 787
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/489 (50%), Positives = 337/489 (68%), Gaps = 12/489 (2%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G +SF ++LSRP+LR +G++KPTPIQA IP+AL G+D+ G
Sbjct: 234 AFFAPEEKPKPGQKVDVSSFQAMSLSRPILRGITTVGFTKPTPIQAKTIPIALMGKDLVG 293
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF LP LERLLYRPK+IP RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 294 GAVTGSGKTAAFVLPILERLLYRPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKF 353
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 354 TLAVGGLSLKAQEVELRLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDG 413
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD LIK+ L KP+R+ D K TLT+E V
Sbjct: 414 FADELNEILTTLPKSRQTMLFSATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLTQEFV 473
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L+ +C +T +VIIF K+ AHR +I+FGL AELHG++ Q
Sbjct: 474 RLRPGREEKRMGYLVHICKNLYTERVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQT 533
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR+ ++E FR V++L+ATD+A+RGLDI GV TVINY P+ + YVHRVGRTARAGR
Sbjct: 534 QRIASVESFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRA 593
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G +VT + DR ++KA K GSK+ SR++ + KW I+ MED++ I +EE
Sbjct: 594 GTSVTLAAEPDRKVVKAAVKAGKAQGSKIISRVIEAKDADKWQAEIDGMEDEIEEIEREE 653
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE-----KG 579
+EER L + EM+ K EN+I H+ EI +RPKRTWF T+++KK A +A + + K
Sbjct: 654 KEERQLAQVEMQIKKGENIIQHEAEIKSRPKRTWFETQQDKKNAKQAGREELNGPQAGKK 713
Query: 580 KGSGNEVTS 588
KGS ++++
Sbjct: 714 KGSATKLSN 722
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/553 (46%), Positives = 358/553 (64%), Gaps = 36/553 (6%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA------NSFMELNLSRP 135
D+ SD + D+ E+E+ K+FFAP + + + SF E NLSRP
Sbjct: 266 DDIASDRDSDEESQVDAEEEEK------RKAFFAPEEEKTSESAMADAKRSFQEFNLSRP 319
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR + +S PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct: 320 ILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 379
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 380 TSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPG 439
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+
Sbjct: 440 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDT 499
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L +P+RL D TL +E VR+R RE + LL LC + +T +VI+
Sbjct: 500 VDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIV 559
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q Q ++E FR+ FL+ATD+A+RGLD
Sbjct: 560 FFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQ---SVENFREGKAAFLLATDLASRGLD 616
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K G+K
Sbjct: 617 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAK 676
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ W+ E++ D+V +L EE+ E+ L +AEM+ TK EN+I H+ EI +
Sbjct: 677 IASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKS 736
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRK 612
RPKRTWF TE++KK A K A + G +G + KEK+K L K
Sbjct: 737 RPKRTWFETERDKKAARKLGAAEL-NGPDAG-----------MSKKEKQK------LSNK 778
Query: 613 ERRKLEAAREMLE 625
++++L+ +R+ E
Sbjct: 779 DKKRLDDSRQRQE 791
>gi|400599006|gb|EJP66710.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 768
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/460 (50%), Positives = 319/460 (69%), Gaps = 7/460 (1%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G +SF ++LSRP+LR +G++KPTPIQA IP+AL G+D+ G
Sbjct: 231 AFFAPEEKPKGGKDERVSSFQAMSLSRPILRGLTNVGFTKPTPIQAKTIPIALMGKDLVG 290
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKT AF +P LERLLYRPK++P RV++LTPTRELA+Q H++ K+A TDI+
Sbjct: 291 GAVTGSGKTGAFIIPILERLLYRPKKVPTTRVVVLTPTRELAIQCHAVATKLAAHTDIKF 350
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K+QE LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 351 TLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSASFPIDTVEILVLDEADRMLEDG 410
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD LI++ + KP R+ D + TL +E V
Sbjct: 411 FADELNEILTTLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKRTVGTLVQEFV 470
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L +C +T +VIIF K+ AH +I+FG+ + AELHG+++Q
Sbjct: 471 RLRPGRENKRMGYLAHICKTLYTERVIIFFRQKKDAHEARIIFGILGMTCAELHGSMSQT 530
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
R+E++E FR V++L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+
Sbjct: 531 GRIESVEAFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRK 590
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G A+T ++DR ++KA K G+K+ SR++ + K I+ M+ ++ I+QEE
Sbjct: 591 GVALTLAAESDRKVVKAAVKAGKAQGAKITSRVIENEKADKLQAQIDGMQREIKEIMQEE 650
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
+EE+ AEM+ K ENMI H+ EI +RPKRTWF TE +
Sbjct: 651 KEEKQFANAEMQVRKGENMIEHEFEIKSRPKRTWFETEHD 690
>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
jacchus]
Length = 764
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/501 (47%), Positives = 337/501 (67%), Gaps = 18/501 (3%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAG--------------DTKSFFAPADGASFHAN-S 126
+N + D DY DE+ + A + FF D + + N S
Sbjct: 130 NNKEGSEDEDSETDYSSADENILTKADTLKVKDRKKKKKGQEAGGFFE--DASQYDENLS 187
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LER
Sbjct: 188 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 247
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+Y+P+R P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+
Sbjct: 248 LIYKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALRAA 307
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTM
Sbjct: 308 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 367
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +
Sbjct: 368 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 427
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+A
Sbjct: 428 RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDILVA 487
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I
Sbjct: 488 TDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIV 547
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
K A + +K+RI+ + + K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 548 KAAKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEK 607
Query: 547 -KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 608 GKEAVVQEPERSWFQTKEERK 628
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/501 (48%), Positives = 338/501 (67%), Gaps = 19/501 (3%)
Query: 83 NDHSDSEFDQHE-DYKPEDEDDFSNAG--------------DTKSFFAPADGASFHAN-S 126
ND SE + E DY DE+ + A + FF D + + N S
Sbjct: 129 NDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKGQEAGGFFE--DASQYDENLS 186
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LER
Sbjct: 187 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 246
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+
Sbjct: 247 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 306
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTM
Sbjct: 307 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 366
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +
Sbjct: 367 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 426
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+A
Sbjct: 427 RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVA 486
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I
Sbjct: 487 TDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIV 546
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 547 KAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEK 606
Query: 547 -KEEIFARPKRTWFVTEKEKK 566
KE + P+R WF T++E+K
Sbjct: 607 GKEAVVQEPERNWFQTKEERK 627
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 131 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 188
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 189 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 248
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 249 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 308
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 309 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 368
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 369 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 428
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 429 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 488
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 489 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 548
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 549 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 608
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 609 EKGKEAVVQEPERSWFQTKEERK 631
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/572 (44%), Positives = 367/572 (64%), Gaps = 47/572 (8%)
Query: 40 KQSPWDFA-AYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHS---------DSE 89
K+ +D + A ++ +S +R T++D KI K ++R + SE
Sbjct: 60 KEGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSE 119
Query: 90 FDQHEDYK------PEDED---DFSNAGD----------------------TKSFFAPAD 118
++ ED++ PEDED D+S+A + T FF D
Sbjct: 120 LEEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETGGFFE--D 177
Query: 119 GASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+ + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTA
Sbjct: 178 ASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTA 237
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K
Sbjct: 238 AFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVK 297
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R
Sbjct: 298 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 357
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357
+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E VRIR RE ++
Sbjct: 358 MCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDR 417
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+
Sbjct: 418 EAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 477
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+ +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +
Sbjct: 478 DEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEE 537
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
+R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E +
Sbjct: 538 ERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQI 597
Query: 538 TKAENMIAH---KEEIFARPKRTWFVTEKEKK 566
A+ ++ KE P+R+WF T++E+K
Sbjct: 598 NTAKRLLEREKGKEASNHEPERSWFQTKEERK 629
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 129 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 186
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 607 EKGKEAVVQEPERSWFQTKEERK 629
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 129 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 186
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 607 EKGKEAVVQEPERSWFQTKEERK 629
>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351656|sp|Q09903.1|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe]
Length = 754
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/513 (47%), Positives = 345/513 (67%), Gaps = 29/513 (5%)
Query: 112 SFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+FFA D + H+ SF +NLSRP+L+ LG+ PT IQ IPLAL G+DI
Sbjct: 242 AFFAEGDKEKSMMTTTHS-SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G+A+TGSGKTAAF +P LERLLYRPK++P RVLIL PTRELA+Q HS+ KIA FTDI
Sbjct: 301 GAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIM 360
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL +GGLS K+QE LR PDIV+ATPGR IDH+RNS ++++ ++++DEADR+LE
Sbjct: 361 VCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED 420
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E+++ CPK RQTMLFSAT+T+ VD+LI+LSL +P+R+ D LT+E
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEF 480
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE+ + A+L+ LC + F + IIF +K AH+++++FGL +L A E+HG+L+Q
Sbjct: 481 VRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQ 540
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ ALE FR ++L+ATDVA+RG+DI G++ VINY P Y+HRVGRTARAGR
Sbjct: 541 EQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGR 600
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A+T + DR +LK + K + +KL +R + + K+ K IE++E V +L E
Sbjct: 601 SGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDE 660
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSG 583
E++ER L+ AE + K EN++ + +EI +RP RTWF +EK+K
Sbjct: 661 EKQERELKIAERDLKKGENIMKYGDEIRSRPARTWFQSEKDK------------------ 702
Query: 584 NEVTSAQQAEDLKIKEKRKREREK-NLPRKERR 615
+ + A +A+D K KRK++ EK +PR ++
Sbjct: 703 -QASKASEAKDKKSLAKRKKQMEKEEVPRAYKK 734
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 133 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 190
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 191 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 250
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 251 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 310
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 311 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 370
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 371 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 430
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 431 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 490
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 491 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 550
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 551 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 610
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 611 EKGKEAVVQEPERSWFQTKEERK 633
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 217
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 638 EKGKEAVVQEPERSWFQTKEERK 660
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 340/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 217
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 638 EKGKEAVVQEPERSWFQTKEERK 660
>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
Length = 1466
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/496 (48%), Positives = 344/496 (69%), Gaps = 11/496 (2%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAP-----ADGASFHANSFMELNLSRPLLRACEALGYSKP 148
+D ++ +D + KSFFAP A+G A SF +LSRP+LR ++G++ P
Sbjct: 269 DDGSGDESEDAAEIEKQKSFFAPEEKPSANGDLKSAKSFQAFSLSRPILRGLTSVGFTTP 328
Query: 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208
TPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP+++P RV IL PTREL
Sbjct: 329 TPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTREL 388
Query: 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVD 268
AVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPGR IDH+RNS S
Sbjct: 389 AVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFT 448
Query: 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328
+D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L++P+
Sbjct: 449 VDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLSRPV 508
Query: 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388
RL D + TL +E VR+R RE + L+ LC + +VI+F +K+ AHR++I
Sbjct: 509 RLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRI 568
Query: 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448
+FGL LK ELHG+++Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P
Sbjct: 569 IFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAP 628
Query: 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITK 505
+ Y+HRVGRTARAGR G A T + DR ++KA K G+K+ SR++ K
Sbjct: 629 QSHAIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAEADK 688
Query: 506 WSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
W+ +E+M+++V IL+EE+EE+ L +AEME T+ N++ H++EI +RPKRTWF +EKEK
Sbjct: 689 WAAKVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHEKEIMSRPKRTWFESEKEK 748
Query: 566 KLAVKADKASIEKGKG 581
++A + S+E+ G
Sbjct: 749 ---LQAKQRSLEELNG 761
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/491 (48%), Positives = 335/491 (68%), Gaps = 17/491 (3%)
Query: 91 DQHEDYKPEDEDDFSNAG-------------DTKSFFAPADGASFHAN-SFMELNLSRPL 136
D DY DE+ + A + FF D + + N SF ++NLSRPL
Sbjct: 295 DSETDYSSADENILTKADTLKVKERKKKKGQEAGGFFE--DASQYDENLSFQDMNLSRPL 352
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
L+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++ P
Sbjct: 353 LKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV 412
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PDI++ATPGR
Sbjct: 413 TRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGR 472
Query: 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFSAT+T++V
Sbjct: 473 LIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEV 532
Query: 317 DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIF 376
+L +SL P+R+ + + L +E VRIR RE ++EA++ +L ++TFT V++F
Sbjct: 533 KDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLF 592
Query: 377 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436
+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI
Sbjct: 593 TQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI 652
Query: 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496
GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+R
Sbjct: 653 EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKAR 712
Query: 497 IVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFAR-PK 555
I+ + I K+ IE+ME V A+LQ E EE+ L+++E++ A+ ++ +E+ P+
Sbjct: 713 ILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEVQINTAKRLLEKGKEVLNHEPE 772
Query: 556 RTWFVTEKEKK 566
R+WF T++E+K
Sbjct: 773 RSWFQTKEERK 783
>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
Length = 703
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/511 (47%), Positives = 343/511 (67%), Gaps = 34/511 (6%)
Query: 88 SEFDQHEDYK------PEDED---DFSNAGD---------------------TKSFFAPA 117
SE ++ ED++ PEDED D+S+A + T FF
Sbjct: 89 SEPEEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKGQETGGFFE-- 146
Query: 118 DGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
D + + N SF ++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKT
Sbjct: 147 DASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 206
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL
Sbjct: 207 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 266
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++
Sbjct: 267 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 326
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE +
Sbjct: 327 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 386
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F
Sbjct: 387 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 446
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +
Sbjct: 447 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE 506
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E +
Sbjct: 507 EERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQ 566
Query: 537 ATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
A+ ++ KE P+R+WF T++E+K
Sbjct: 567 INTAKRLLEKGKEASNHEPERSWFQTKEERK 597
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/442 (51%), Positives = 324/442 (73%), Gaps = 3/442 (0%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H SF +LNLSRP+L+A E++G+ KPT IQ+ IP+AL G+DI GSA+TGSGKTAAF +P
Sbjct: 169 HVLSFSQLNLSRPILKALESIGFDKPTTIQSKAIPIALLGKDIVGSAVTGSGKTAAFVIP 228
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERLLYRPK+I RVLIL PTRELA+Q +++ +K+A +TDI+ C+ GGLS K+QE
Sbjct: 229 VLERLLYRPKKIAVTRVLILCPTRELAIQCYNVTKKLATYTDIKTCICTGGLSLKIQEAE 288
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR PDIV+ATPGR IDH+RNS + + ++++DEADR+L+ GF E++E++++CPK
Sbjct: 289 LRKRPDIVIATPGRFIDHVRNSYGFSPNSIEIIVIDEADRILDEGFQDELNEIIKICPKS 348
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT+T+ VD+LI+LSL KP+RL DP +L +E +RIR +E + A+LL
Sbjct: 349 RQTILFSATMTDKVDQLIRLSLNKPVRLFVDPKNSTVKSLIQEFIRIRSHKEHLRTAILL 408
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
LCS F +K IIF +K AH+++I+FGL L A ELHGNL+Q QR+E+LELFR+ +
Sbjct: 409 YLCSDVFKTKTIIFFDSKSFAHKIRIIFGLLHLNARELHGNLSQEQRIESLELFRRGRTN 468
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FL+ATD+A+RGLDI GV+ +INY P Y+HR+GRTAR G +G AVT + + DR ++
Sbjct: 469 FLLATDLASRGLDIKGVKYIINYEAPSSFNIYLHRIGRTARGGCDGVAVTLIGEGDRRIM 528
Query: 483 KA---IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
K IA++ G+ +++R I ++ ++ +E+ V +L+EE+EE+ L +AEME K
Sbjct: 529 KMATKIAEKHGNIIRNRTFPPNLINTYNTKLQNLENAVQNVLKEEKEEKELLQAEMELQK 588
Query: 540 AENMIAHKEEIFARPKRTWFVT 561
++N+I H++EI +R RTWF T
Sbjct: 589 SKNLIKHEKEIKSRLPRTWFYT 610
>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
gi|160380650|sp|A7F4L5.1|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 801
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/468 (51%), Positives = 330/468 (70%), Gaps = 8/468 (1%)
Query: 111 KSFFAPAD----GASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
++FFAP + GA NS F ++LSRP+LR +G+++PTPIQ+ IP+AL G+D+
Sbjct: 249 EAFFAPEEKPVKGAKPELNSTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDV 308
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKTAAF +P LERLLYRPK++P RV IL PTRELA+Q H++ K+A TDI
Sbjct: 309 VGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDI 368
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
+ CL VGGLS K+QE LR PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 369 KFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLE 428
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT++ VD LI++ L +P+RL D TLT+E
Sbjct: 429 AGFADELNEILTTIPKSRQTMLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQE 488
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
+R+R RE + LL LC+ +T +VI+F K+ AHR +I+FGL+ LKA ELHG+++
Sbjct: 489 FIRLRPGREGKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMS 548
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR FL+ATD+A+RGLDI GV TVINY P+ Y+HRVGRTARAG
Sbjct: 549 QEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAG 608
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K + G+K+ SR++ WS+ +++M D++ IL+
Sbjct: 609 RSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSEKVDEMADEIEEILK 668
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
EE+E++IL +AEME K +N + H+ EI RPKRTWF +EKEK A K
Sbjct: 669 EEKEDKILAQAEMEVRKGQNFMDHEAEIKGRPKRTWFESEKEKLAAKK 716
>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 803
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/512 (50%), Positives = 349/512 (68%), Gaps = 14/512 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL+LSRPL +A + LG++ PTPIQA IP + C A TGSGKTAAF LP LE
Sbjct: 182 TFQELHLSRPLQKAVQKLGFTMPTPIQAKTIPPSTQ----C--ATTGSGKTAAFLLPILE 235
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYR AIRVL+L PTRELA+Q S++E +AQFT+I CLVVGGLS K+QE LR
Sbjct: 236 RLLYRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRK 295
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDHL N+ V LDDL +L+LDEADRLL++GF E+ ++V CP RQ+
Sbjct: 296 RPDVVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQS 355
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSATL+++V L KLSL +P+R++ D + STL +E V+IR + ++ A+LLSL
Sbjct: 356 LLFSATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLA 415
Query: 366 SKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ F T IIF +K+ HRL I+FGLA L AAELHG+L+Q QR E+L+LFR V FL
Sbjct: 416 SRVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFL 475
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+A+DVAARGLD++GV+TVINY PR+L Y+HRVGRTARAG +G A +FVT+ DR +LK
Sbjct: 476 LASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGRACSFVTEGDRKILKD 535
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I RA +K KSR V+++S+ W I++M D + +I++EE +E +RKAE E K E +I
Sbjct: 536 IVSRAKTKAKSRTVSQESVKYWRNKIDEMADDIKSIIKEELKEMDIRKAEKEIRKVEKLI 595
Query: 545 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAE-DLKIKEKRKR 603
+ + ++ WF T EK A +A K I++G E+ +Q E D K +K R
Sbjct: 596 STSSSKSSSMEKEWFATNSEKAKAKEAWK--IQEGIIDPEELKRQKQEELDKKAGKKADR 653
Query: 604 EREKNLPRKERR----KLEAAREMLEDEDQVD 631
+ L R++RR + E AREM E E D
Sbjct: 654 DPYLGLSRRKRRSKMHREEIAREMAEAEQSDD 685
>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
gi|160380649|sp|A6RUH2.1|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
gi|347828004|emb|CCD43701.1| hypothetical protein [Botryotinia fuckeliana]
Length = 801
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/468 (51%), Positives = 329/468 (70%), Gaps = 8/468 (1%)
Query: 111 KSFFAPAD----GASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
++FFAP + GA N+ F ++LSRP+LR +G+++PTPIQ+ IP+AL G+D+
Sbjct: 249 EAFFAPEEKPVKGAKQELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDV 308
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKTAAF +P LERLLYRPK++P RV IL PTRELA+Q H++ K+A TDI
Sbjct: 309 VGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDI 368
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
+ CL VGGLS K+QE LR PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 369 KFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLE 428
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT++ VD LI++ L +P+RL D TL +E
Sbjct: 429 AGFADELNEILTTIPKSRQTMLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQE 488
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
+R+R RE + LL LC+ +T +VI+F K+ AHR +I+FGL+ LKA ELHG+++
Sbjct: 489 FIRLRPGREGKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMS 548
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR FL+ATD+A+RGLDI GV TVINY P+ Y+HRVGRTARAG
Sbjct: 549 QEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAG 608
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K + G+K+ SR++ WS+ +++M D++ IL+
Sbjct: 609 RSGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIEASEADSWSEKVDEMADEIEEILK 668
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
EE+E++IL +AEME K +N I H+ EI RPKRTWF TEKEK A K
Sbjct: 669 EEKEDKILAQAEMEVRKGQNFIDHEAEIKGRPKRTWFETEKEKLAAKK 716
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/502 (47%), Positives = 339/502 (67%), Gaps = 20/502 (3%)
Query: 83 NDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN- 125
ND SE + E DY DE+ + A + FF D + + N
Sbjct: 130 NDKEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDENL 187
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+
Sbjct: 248 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDLKSQEAALRA 307
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + + K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 548 VKAAKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLE 607
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 608 KGKEAVVQEPERSWFQTKEERK 629
>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 339/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 129 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 186
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + Y HRVGRTARAGR G +V+ V +++R +LK
Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 546
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 547 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 606
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 607 EKGKEAVVQEPERSWFQTKEERK 629
>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Ailuropoda melanoleuca]
Length = 764
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/511 (47%), Positives = 343/511 (67%), Gaps = 34/511 (6%)
Query: 88 SEFDQHEDYK------PEDED---DFSNAGD---------------------TKSFFAPA 117
SE ++ ED++ PEDED D+S+A + T FF
Sbjct: 120 SEPEEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKGQETGGFFE-- 177
Query: 118 DGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
D + + N SF ++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKT
Sbjct: 178 DASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 237
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL
Sbjct: 238 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 297
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++
Sbjct: 298 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 357
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE +
Sbjct: 358 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 417
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F
Sbjct: 418 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 477
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +
Sbjct: 478 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE 537
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ L+++E +
Sbjct: 538 EERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQ 597
Query: 537 ATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
A+ ++ KE P+R+WF T++E+K
Sbjct: 598 INTAKRLLEKGKEASNHEPERSWFQTKEERK 628
>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 835
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/497 (49%), Positives = 339/497 (68%), Gaps = 13/497 (2%)
Query: 82 DNDHSDSEFDQHEDYKPED-----EDDFSNAGDTKSFFAPADGASFHAN-----SFMELN 131
DND S +D +D +D + K+FFAP D S N SF +
Sbjct: 260 DNDSVASPVAHPDDIASDDGSSDESEDAAEVEKQKAFFAPEDTTSTKDNLETAKSFQAFS 319
Query: 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191
LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP
Sbjct: 320 LSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYRP 379
Query: 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 251
+++P RV IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++
Sbjct: 380 RKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVII 439
Query: 252 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311
ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT
Sbjct: 440 ATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSAT 499
Query: 312 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371
+T +D+LI++ L +P+RL + + TL +E VR+R RE + L++LC +
Sbjct: 500 MTNTIDKLIRVGLNRPVRLMVNAQKQTVGTLVQEFVRLRPGREDKRLGYLVTLCKTVYKD 559
Query: 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
+VIIF K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V FL+ATD+A+
Sbjct: 560 RVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFRDGKVSFLLATDLAS 619
Query: 432 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA-- 489
RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++KA K
Sbjct: 620 RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKTGRA 679
Query: 490 -GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 548
G+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I+H++
Sbjct: 680 QGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISHEK 739
Query: 549 EIFARPKRTWFVTEKEK 565
EI +RPKRTWF +EKEK
Sbjct: 740 EIMSRPKRTWFESEKEK 756
>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
Length = 796
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 339/503 (67%), Gaps = 20/503 (3%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 217
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + Y HRVGRTARAGR G +V+ V +++R +LK
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 577
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 638 EKGKEAVVQEPERSWFQTKEERK 660
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/502 (47%), Positives = 337/502 (67%), Gaps = 20/502 (3%)
Query: 83 NDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN- 125
ND SE + E DY DE+ + A + FF D + + N
Sbjct: 129 NDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDENL 186
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PT IQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 187 SFQDMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 246
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+
Sbjct: 247 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 306
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 307 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 366
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 367 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 426
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 427 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 486
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I
Sbjct: 487 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 546
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 547 VKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLE 606
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE + P+R WF T++E+K
Sbjct: 607 KGKEAVVQEPERNWFQTKEERK 628
>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
Length = 834
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/479 (50%), Positives = 335/479 (69%), Gaps = 11/479 (2%)
Query: 111 KSFFAP-----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K+FFAP +G A SF +LSRP+LR ++G++ PTPIQ IP+AL G+D+
Sbjct: 292 KAFFAPEEKALTNGILEPAKSFQAFSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDV 351
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A FTDI
Sbjct: 352 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDI 411
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 412 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 471
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+RL D + TL +E
Sbjct: 472 DGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQE 531
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VR+R RE + L+ LC + +VIIF K+ AHR++I+FGL LKAAELHG+++
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAG
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 651
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K G+K+ SR + KW+ +E+M+++V IL+
Sbjct: 652 RSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILK 711
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+EE+ L +AEME T+ N+I H++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 712 EEKEEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/479 (50%), Positives = 335/479 (69%), Gaps = 11/479 (2%)
Query: 111 KSFFAP-----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K+FFAP +G A SF +LSRP+LR ++G++ PTPIQ IP+AL G+D+
Sbjct: 292 KAFFAPEEKALTNGILEPAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDV 351
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A FTDI
Sbjct: 352 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDI 411
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 412 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 471
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+RL D + TL +E
Sbjct: 472 DGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQE 531
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VR+R RE + L+ LC + +VIIF K+ AHR++I+FGL LKAAELHG+++
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAG
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 651
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K G+K+ SR + KW+ +E+M+++V IL+
Sbjct: 652 RSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILK 711
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+EE+ L +AEME T+ N+I H++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 712 EEKEEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/457 (50%), Positives = 324/457 (70%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 175 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 232
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL
Sbjct: 233 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLA 292
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 352
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 353 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 412
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 413 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 472
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 473 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 532
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 533 VSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+++E + A+ ++ KE + P+R WF T++E+K
Sbjct: 593 QQSEAQINTAKRLLEKGKEAVVQEPERGWFQTKEERK 629
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/479 (50%), Positives = 335/479 (69%), Gaps = 11/479 (2%)
Query: 111 KSFFAP-----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K+FFAP +G A SF +LSRP+LR ++G++ PTPIQ IP+AL G+D+
Sbjct: 292 KAFFAPEEKALTNGILEPAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDV 351
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A FTDI
Sbjct: 352 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDI 411
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 412 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 471
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +VD+LI++ L +P+RL D + TL +E
Sbjct: 472 DGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQE 531
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VR+R RE + L+ LC + +VIIF K+ AHR++I+FGL LKAAELHG+++
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAG
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 651
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
R G A T + DR ++KA K G+K+ SR + KW+ +E+M+++V IL+
Sbjct: 652 RSGRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILK 711
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+EE+ L +AEME T+ N+I H++EI +RPKRTWF TEKEK ++A + S+E+ G
Sbjct: 712 EEKEEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEK---LQAKQRSLEELNG 767
>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405, partial [Trichoplax
adhaerens]
Length = 463
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/438 (53%), Positives = 311/438 (71%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A LG+ PTPIQ++ IP+AL G+DIC A TG+GKTAAF LP LE
Sbjct: 18 SFRDINLSRPLLKAISTLGFEHPTPIQSSTIPIALLGKDICACAATGTGKTAAFMLPILE 77
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+YRPKRIP RVL+L PTRELA+QV S+ + + Q+TDI CL GGL QE ALR
Sbjct: 78 RLIYRPKRIPVTRVLVLVPTRELAIQVFSVGKSLCQYTDIEFCLAAGGLDIASQEAALRR 137
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDIV+ATPGR++DHL N+ S DL + +L+LDEADR + F ++ EL+RL PK RQT
Sbjct: 138 NPDIVIATPGRLVDHLHNTPSFDLQGIEILVLDEADRQIHEHFKDQMDELIRLSPKGRQT 197
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V+EL LSL KP+RL + + + L +E +RIR RE ++EA++ +LC
Sbjct: 198 MLFSATMTDEVEELATLSLNKPIRLFINRNTDVANNLRQEFIRIRPAREDDREAIIAALC 257
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ F + +IF K HRL+I+ GL L ELHGNLTQ QRLEA F+K + L+
Sbjct: 258 YRQFNERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQLQRLEAFNRFKKGEIGILV 317
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI GV+TVINY P YVHRVGRTARAG+ G ++T V + +R LLK I
Sbjct: 318 ATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGRSITLVVEKERKLLKTI 377
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K + + +KSRI++ + ITK+ + I++++ + IL+ E EE+ R +EME KA+N+I
Sbjct: 378 VKNSKTAVKSRIISPEIITKYKRKIQKIQADIKDILKAEEEEKAFRVSEMEVNKAKNLII 437
Query: 546 HKEEIFARPKRTWFVTEK 563
H+EEI +RPKRT+ EK
Sbjct: 438 HEEEIHSRPKRTFIQAEK 455
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 323/457 (70%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 205 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 262
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL
Sbjct: 263 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLA 322
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 323 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 382
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++RLC RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 383 QMKEIIRLCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 442
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 443 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 502
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 503 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 562
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 563 VSLVGEEERRMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 622
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+++E + A+ ++ KE P+R+WF T++E+K
Sbjct: 623 QQSEAQINTAKRLLEKGKEATNQEPERSWFQTKEERK 659
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/523 (48%), Positives = 348/523 (66%), Gaps = 20/523 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL+LSRPL +A LGY++PTPIQA IPL L G+DI SA TGSGKTAAF LP LE
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILE 294
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYR RVLI+ PTRELA+Q HS+ E +AQFT+++ CLVVGGLS K+QE LR
Sbjct: 295 RLLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRK 354
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+++ATPGR+IDHL N+ V L+D+ +L+LDEADRLL++GF E++ +V CP RQT
Sbjct: 355 RPDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQT 414
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSATL++DV L KLSL++P+R++ D + STL +E ++I+ + ++ A+LLSLC
Sbjct: 415 LLFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLC 474
Query: 366 SKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ F I+F +K+ HR+ IL GL+ LK ELHG+L Q QR EAL+ FR VDFL
Sbjct: 475 TRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFL 534
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLD++GV+TVINY PR L Y+HRVGRTARAG G + +F+T+ DR +LK
Sbjct: 535 LATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKD 594
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE--- 541
I RA +K KSR VA++SI W I++M D V I++EE E +K E + KAE
Sbjct: 595 IVSRAKTKAKSRTVAQESIKLWRAKIDEMTDDVKDIIREELRELDFKKTEKDLMKAERIV 654
Query: 542 -NMIAHKEEIF--------ARP-KRTWFVTEKEKKLAVKADKA--SIEKGKGSGNEVTSA 589
N + HK+ I A P +R WF ++KE++ + +A K I G V
Sbjct: 655 ANALGHKKLITDNGGIIPEAAPMERVWFQSKKEREESREAWKTENGIVSMDKDGKPVAGG 714
Query: 590 QQAEDLKIKEKRKREREKNLPRKERRKL----EAAREMLEDED 628
+ A + +K ++ + RK+RR + E AR+M E ED
Sbjct: 715 KPARKGVLLKKAPKDPYAGMSRKKRRSVMHREEMARDMAEQED 757
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/460 (50%), Positives = 324/460 (70%), Gaps = 4/460 (0%)
Query: 109 DTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+T FF D + + N SF ++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC
Sbjct: 171 ETGGFFE--DASQYDENLSFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICA 228
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TG+GKTAAFALP LERL+Y+P++ P RVLIL PTREL +QVHS+ +++AQF I
Sbjct: 229 CAATGTGKTAAFALPVLERLIYKPRQAPVTRVLILVPTRELGIQVHSVTKQLAQFCSITT 288
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
CL VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+
Sbjct: 289 CLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY 348
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +
Sbjct: 349 FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFI 408
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
RIR RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q
Sbjct: 409 RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 468
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR
Sbjct: 469 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 528
Query: 468 GYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE
Sbjct: 529 GRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEE 588
Query: 528 RILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+ L+++E + A+ ++ KE P+R+WF T++E+K
Sbjct: 589 KELQQSEAQINTAKRLLEKGKEAPNHEPERSWFQTKEERK 628
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/498 (47%), Positives = 335/498 (67%), Gaps = 20/498 (4%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 217
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637
Query: 545 AH-KEEIFARPKRTWFVT 561
KE + P+R+WF T
Sbjct: 638 EKGKEAVVQEPERSWFQT 655
>gi|417412705|gb|JAA52724.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 788
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/457 (50%), Positives = 325/457 (71%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+ + +PTPIQ ACIP+ L G+DIC A
Sbjct: 198 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMNFKQPTPIQKACIPVGLLGKDICACAA 255
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+++++AQF I CL
Sbjct: 256 TGTGKTAAFALPILERLIYKPRQAPVTRVLVLVPTRELGIQVHSVVKQLAQFCSITTCLA 315
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR++PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 316 VGGLDVKSQEAALRAVPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 375
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 376 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 435
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRL
Sbjct: 436 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQAQRL 495
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 496 EALRRFKDEQIDILVATDVAARGLDIAGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 555
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V ++LQ E EER +
Sbjct: 556 VSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYSVLQLEAEEREM 615
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+++E + A+ ++ KE P+R+WF T++E+K
Sbjct: 616 QQSEAQINTAKRLLEKGKEAQNHEPERSWFQTKEERK 652
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/463 (50%), Positives = 322/463 (69%), Gaps = 7/463 (1%)
Query: 111 KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K+FFAP + G +SF ++LSRP+LR ++G++KPTPIQ+ IP+AL G+D+
Sbjct: 237 KAFFAPEEPAKPGKKSDMSSFQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLV 296
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKT AF +P LERLLYRPK+IP RV++LTPTRELA+Q H++ K+A +TDI+
Sbjct: 297 GGAVTGSGKTGAFIVPILERLLYRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAYTDIK 356
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGLS K+QE LR PD+++ATPGR IDH+RNS S ++D + +LILDEADR+LE
Sbjct: 357 FTLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILILDEADRMLED 416
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI++ + KP R+ D K TL +E
Sbjct: 417 GFADELNEILTTLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEF 476
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L +C + +VIIF K+ AHR +I+FGL L AELHG++ Q
Sbjct: 477 VRLRPGREEKRMGYLAYICKTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQ 536
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR
Sbjct: 537 TQRISSVEEFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGR 596
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKLK---SRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+G A+T + DR ++KA K A ++ SR + K+ I++M+D++ I+QE
Sbjct: 597 KGTAITLAAEPDRKVVKAAVKAAKAQGAKVVSRAIDASEADKFQNEIDEMDDEIDEIMQE 656
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
E+EE+ L EM+ K EN+I H+ +I +RPKRTWF TE +KK
Sbjct: 657 EKEEKHLAHVEMQVRKGENLIEHEADIKSRPKRTWFETEHDKK 699
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 322/457 (70%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 175 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 232
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL
Sbjct: 233 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLA 292
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 352
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 353 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 412
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 413 PNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 472
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 473 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 532
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 533 VSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+K+E + A+ ++ KE P+R+WF T++E+K
Sbjct: 593 QKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 629
>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
Length = 734
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/651 (42%), Positives = 402/651 (61%), Gaps = 58/651 (8%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDF----------AAYSESVSDE---HF 58
D+EI ++Y E EE D + P K+ K+ DF A Y++ ++ +
Sbjct: 14 DQEI----TDYSEKSDEEDDYQ-PRKQKKKESKDFDSNFQFINNVAEYNQDTWNDLKKYI 68
Query: 59 RRR-TTSVDFKITKSLQQRSVPIVDND--HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFA 115
+R+ TT +D KI K +Q + + +D ++E DQ +D EDD K F
Sbjct: 69 KRKATTKLDDKIKKIREQSNNQVGTDDLIKVETEVDQDDDSVLLSEDDLK-----KDSFK 123
Query: 116 PADGASFHANS----------------------FMELNLSRPLLRACEALGYSKPTPIQA 153
+ NS F ++NLSRPLL+A + + PTPIQA
Sbjct: 124 TKEKKGKRKNSTKKKDEETIDFEECTNFETDATFYQMNLSRPLLKAITTMNFLTPTPIQA 183
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQV 212
A IP+AL GRDICG A TG+GKTAA+ LPTLERL+Y+P PA+ RVL+L PTREL VQV
Sbjct: 184 ATIPVALMGRDICGCAATGTGKTAAYMLPTLERLMYKPLDGPAVTRVLVLVPTRELGVQV 243
Query: 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272
+ + ++++QFT + L VGGL K+QE+ LR PDIV+ATPGR+IDHLRN+ + LD +
Sbjct: 244 YQVTKQLSQFTSVETGLSVGGLDVKVQESILRRNPDIVIATPGRLIDHLRNTPTFSLDII 303
Query: 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332
VLILDEADR+L+ F+ ++ +V C + RQTMLFSAT+TE+V +L +SL KP+++
Sbjct: 304 EVLILDEADRMLDEYFAEQMKYIVNQCSRSRQTMLFSATMTEEVKDLAAVSLDKPIKIFV 363
Query: 333 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392
D + L +E +RIR+ RE ++EA+L +L +TF V++F TK+ AHRL IL GL
Sbjct: 364 DSNQDVAFNLRQEFIRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGL 423
Query: 393 AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452
+K ELHGNLTQ QRLE L+ F+ + ++ LIATDVAARGLDI GV+TVIN+ P L
Sbjct: 424 LGVKVGELHGNLTQPQRLENLQEFKDEIINILIATDVAARGLDISGVKTVINFVMPATLQ 483
Query: 453 SYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
Y+HRVGRTARAGR G +V+ + +RSL+K + KRA + +K+RI+ I K++K ++
Sbjct: 484 HYIHRVGRTARAGRVGVSVSLAGEQERSLVKEVIKRAKNPVKNRIIPPDIIEKYNKKLQS 543
Query: 513 MEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKAD 572
+E V ILQEE+ ER L K E +A +AEN++ EE R R+WF ++KE+++ +
Sbjct: 544 LEIDVEKILQEEKSERELAKIENQANRAENLLKDVEE---RNHRSWFQSKKERRM----E 596
Query: 573 KASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREM 623
K ++ + N+ ++ E + I E +K+ + +N P+K+ + A RE+
Sbjct: 597 KENLRLTERPTNK-KKDREKEPINIVEDKKK-KAQNEPKKDTAEDRAKREL 645
>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
Length = 1561
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/550 (46%), Positives = 354/550 (64%), Gaps = 41/550 (7%)
Query: 58 FRRRTTSVDFKITKSLQQRSV--------PIVDND----HSDSEFDQHEDYKPEDEDDFS 105
+R T++D KI K Q+R + + D D + SE + ED+ E+E+D
Sbjct: 877 LKRSATTLDEKIEKVRQKRKIQEKEAKQAKVKDGDAGTEDNQSEKRECEDFGREEEEDNE 936
Query: 106 N--AGDTKSFFAPAD------------GASFHANSFME-------------LNLSRPLLR 138
+ + D ++ F AD G A SF E +NLSRPLL+
Sbjct: 937 SQYSLDDETIFTKADTIKVKERKRSKKGGQKEAESFFEDASQYDDSLSFQDMNLSRPLLK 996
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+Y+P++ P R
Sbjct: 997 AITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIYKPRQAPITR 1056
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
VL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS PDI++ATPGR+I
Sbjct: 1057 VLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALRSGPDILIATPGRLI 1116
Query: 259 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DHL N S L + VLILDEADR+L+ F ++ E++RLC K RQTMLFSAT+TE+V +
Sbjct: 1117 DHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQTMLFSATMTEEVKD 1176
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSG 378
L +SL P R+ + + L +E +RIR RE ++EA++ +L ++TF V++F+
Sbjct: 1177 LASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQ 1236
Query: 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438
TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATDVAARGLDI G
Sbjct: 1237 TKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEG 1296
Query: 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498
V+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI+
Sbjct: 1297 VKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKSAKTPVKARIL 1356
Query: 499 AEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFARP-KR 556
+ I K+ + IE +E V A+L EREER ++++E + KA+ + K+E + +R
Sbjct: 1357 PQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQETATKGVER 1416
Query: 557 TWFVTEKEKK 566
+WF T +E+K
Sbjct: 1417 SWFQTREERK 1426
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 322/457 (70%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 145 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 202
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL
Sbjct: 203 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLA 262
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 263 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 322
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 323 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 382
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 383 PNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 442
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 443 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 502
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 503 VSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 562
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+K+E + A+ ++ KE P+R+WF T++E+K
Sbjct: 563 QKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 599
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 322/457 (70%), Gaps = 4/457 (0%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 175 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 232
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL
Sbjct: 233 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLA 292
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 352
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 353 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 412
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 413 PNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 472
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 473 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 532
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 533 VSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+K+E + A+ ++ KE P+R+WF T++E+K
Sbjct: 593 QKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 629
>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
gi|142982514|sp|A1CNV8.1|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
Length = 826
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/492 (49%), Positives = 339/492 (68%), Gaps = 6/492 (1%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGAS---FHANSFMELNLSRPLLRACE 141
H D E ++ E E D A K+FFAP + + SF + NLSRP+LR
Sbjct: 263 HPDDEVASDDESGAESEVDAEEAEKRKAFFAPEEKTTEEPTSKRSFQDFNLSRPILRGLA 322
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201
++ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P RV I
Sbjct: 323 SVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAI 382
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
L PTRELAVQ +++ K+A TD+ C +VGG S + QE L+ PD+++ATPGR IDH+
Sbjct: 383 LMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHM 442
Query: 262 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+ VD+LI+
Sbjct: 443 RNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIR 502
Query: 322 LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
+ L +P+RL D LT+E VR+R RE + LL LCS+ FT +VI+F K+
Sbjct: 503 VGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLLYLCSEIFTGRVIVFFRQKK 562
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
AHR++I+FGL LKAAELHG+++Q QR++++E FR+ V FL+ATD+A+RGLDI GV+T
Sbjct: 563 EAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAFLLATDLASRGLDIKGVET 622
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA---IAKRAGSKLKSRIV 498
VINY P+ Y+HRVGRTARAGR G A T D DR ++KA K G+K+ SR+V
Sbjct: 623 VINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVRAGKAQGAKIASRVV 682
Query: 499 AEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTW 558
+W+ +E +E+++ +L+EE+ E+ + +AEM+ TK EN++ H EI +RPKRTW
Sbjct: 683 EPAVADQWAAKVEALEEEIEEVLKEEKLEKHMAQAEMQVTKGENLMKHGAEIMSRPKRTW 742
Query: 559 FVTEKEKKLAVK 570
F TE++K+ + K
Sbjct: 743 FETERDKRASRK 754
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/494 (49%), Positives = 339/494 (68%), Gaps = 20/494 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGA------SFHANSFMELNLSRP 135
D D S S+ + E+ + ++E FFAP + A S SF L+LSRP
Sbjct: 255 DEDESGSDSEDDEEIRKQNE-----------FFAPDEQAVESKSNSGAPASFQNLSLSRP 303
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRP+++P
Sbjct: 304 ILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTAAFIVPILERLLYRPRKVP 363
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 364 TSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 423
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +LILDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 424 RFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTSS 483
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L KP+RL D + TL +E VR+R RE + A L+ LC +TS+VI+
Sbjct: 484 VDKLIRVGLNKPIRLMVDSKKQTVGTLVQEFVRLRPGREDKRLAYLMFLCKTVYTSRVIV 543
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+A+RGLD
Sbjct: 544 FFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDGKVSYLLATDLASRGLD 603
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K G+K
Sbjct: 604 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAK 663
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H++EI +
Sbjct: 664 IVSRVIDPAMADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIGHQDEIMS 723
Query: 553 RPKRTWFVTEKEKK 566
RPKRTWF +EK+K+
Sbjct: 724 RPKRTWFESEKDKR 737
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/501 (47%), Positives = 337/501 (67%), Gaps = 20/501 (3%)
Query: 84 DHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN-S 126
D + SE D E DY DE+ + A + FF D + + + S
Sbjct: 180 DEAGSEDDDSETDYSSADENILTKADTLKVKEQKKKKKKGQEAGGFFE--DASQYDESLS 237
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LER
Sbjct: 238 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 297
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+
Sbjct: 298 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 357
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTM
Sbjct: 358 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 417
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +
Sbjct: 418 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 477
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+A
Sbjct: 478 RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVA 537
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 538 TDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIV 597
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 598 KTAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEK 657
Query: 547 -KEEIFARPKRTWFVTEKEKK 566
KE P+R+WF T++E+K
Sbjct: 658 GKEGPNHEPERSWFQTKEERK 678
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/498 (48%), Positives = 340/498 (68%), Gaps = 20/498 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADG------ASFHANSFMELNLSRP 135
D D S SE + ++ + ++E FFAP +G S SF L+LSRP
Sbjct: 259 DEDGSGSESEDDDEIRKQNE-----------FFAPEEGMTESKSTSGAPASFQNLSLSRP 307
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP+++P
Sbjct: 308 ILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLYRPRKVP 367
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 368 TSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 427
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 428 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTNS 487
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +T++VI+
Sbjct: 488 VDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYTNRVIV 547
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+A+RGLD
Sbjct: 548 FFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDLASRGLD 607
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K G+K
Sbjct: 608 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAK 667
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ KW++ ++ + +V +LQEE+EE+ L +AEM+ T+ +N+I H+EEI +
Sbjct: 668 IVSRVIEPAVADKWAEQVDDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMS 727
Query: 553 RPKRTWFVTEKEKKLAVK 570
RPKRTWF +EK+K+ + K
Sbjct: 728 RPKRTWFESEKDKRASKK 745
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 332/499 (66%), Gaps = 21/499 (4%)
Query: 87 DSEFDQHEDYKPEDEDDFSNAGDTK----------------SFFAPADGASFHAN-SFME 129
+ E D Y +DE F+ A K SFF D + + N SF +
Sbjct: 127 EEEEDNESQYSLDDETIFTKADTLKVKERKRSKKGGQKEAESFFE--DASEYDDNLSFQD 184
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+Y
Sbjct: 185 MNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIY 244
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL K QE ALRS PDI
Sbjct: 245 KPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDI 304
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC + RQTMLFS
Sbjct: 305 LIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFS 364
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+TE+V +L +SL P R+ + + L +E +RIR RE ++EA++ +L ++TF
Sbjct: 365 ATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTF 424
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F+ + +D L+ATDV
Sbjct: 425 PDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDV 484
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
AARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ V + +R +LK I K A
Sbjct: 485 AARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 544
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI--AHK 547
+ +K+RI+ + I K+ + IE +E V A+L EREER ++++E + KA+ + +
Sbjct: 545 KTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQ 604
Query: 548 EEIFARPKRTWFVTEKEKK 566
E +R+WF T +E+K
Sbjct: 605 EAATKGVERSWFQTREERK 623
>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 256/456 (56%), Positives = 335/456 (73%), Gaps = 8/456 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A SF +L LSRPLLRA +G++ PTPIQA CIPLAL G+DIC +A TGSGKTAA+ LP
Sbjct: 169 ARSFNQLRLSRPLLRAVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPI 228
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LERLLY+ IRVLI+ PTRELA QVH++ K+ ++T I CCLVVGGL + Q L
Sbjct: 229 LERLLYKNNAQNLIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDL 288
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ PDIVV TPGRMIDH+ NSMSVDLDD+ V+ILDEADRLLELGF+ E+HEL+RLCP +R
Sbjct: 289 QRRPDIVVCTPGRMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKR 348
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQEAVLL 362
QT+LFSAT+T+DV +LI LSL KP+R+ DP + + + +V+ R++ E + A+LL
Sbjct: 349 QTLLFSATMTDDVSDLISLSLQKPVRVFVDPV----NQVVDRLVQFIRVKDESLRTAMLL 404
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S+ ++ F ++ IIF+ K AH L I+ GL LK+AELHGNL Q QRL AL+ F K+ VD
Sbjct: 405 SIITRHFKTETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVD 464
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FLIATDVAARGLDI GVQTVIN P++ +Y+HRVGRTARAG G AVTFV ++ R L+
Sbjct: 465 FLIATDVAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFVEEDRRLLM 524
Query: 483 KAIAKR---AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
K + K+ A ++K+R V ++S+ K++ +E ++ ++ IL+EE+ E+ + +A MEAT+
Sbjct: 525 KKLVKQAVEAKQQIKTRSVNKESVAKFAAQLEDLKKEIDEILEEEKVEKEIERATMEATR 584
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKAS 575
A+N+I H EI AR KRTWF +EKEKK D AS
Sbjct: 585 ADNLIKHGNEIKARKKRTWFQSEKEKKTTRMKDLAS 620
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/524 (47%), Positives = 350/524 (66%), Gaps = 27/524 (5%)
Query: 111 KSFFAPADGASFHA------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
K+FFAP + + + SF E NLSRP+LR + +S PTPIQ IP+AL G+D
Sbjct: 294 KAFFAPEEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKD 353
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
I GSA+TGSGKTAAF +P LERLL+RP+++P RV IL PTRELAVQ +++ K+A +TD
Sbjct: 354 IVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD 413
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
I C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+L
Sbjct: 414 ITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRML 473
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
E GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL D TL +
Sbjct: 474 EDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQ 533
Query: 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
E VR+R RE + LL LC + +T +VI+F K+ AHR++I+FGL LKAAELHG++
Sbjct: 534 EFVRLRPGREDKRLGYLLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSM 593
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q QR++++E FR+ FL+ATD+A+RGLDI GV+TVINY P+ Y+HRVGRTARA
Sbjct: 594 SQEQRIKSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARA 653
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
GR G A T + DR ++KA K G+K+ SR++ W+ E++ ++V +L
Sbjct: 654 GRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPAVADSWAAKAEELAEEVEEVL 713
Query: 522 QEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 581
EE+ E+ L +AEM+ TK EN+I H+ EI +RPKRTWF TE++KK A K A + G
Sbjct: 714 SEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFETERDKKAARKLGAAEL-NGPD 772
Query: 582 SGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
+G L KEK+K L K++++L+ +R+ E
Sbjct: 773 AG-----------LSKKEKQK------LSNKDKKRLDDSRQRQE 799
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/469 (50%), Positives = 324/469 (69%), Gaps = 6/469 (1%)
Query: 111 KSFFAPAD---GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
K+FFAP + A+SF ++LSRP+LR +G+SKPTPIQA IP+AL G+D+ G
Sbjct: 241 KAFFAPEEEEASGKKSASSFQAMSLSRPILRGLATVGFSKPTPIQAKSIPIALMGKDLVG 300
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKT AF +P LERLLYRPK+IP RV++LTPTRELA+Q H++ K+A FTDI+
Sbjct: 301 GAVTGSGKTGAFIVPILERLLYRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAFTDIKF 360
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE L+ PD+++ATPGR IDH+RNS S +D + +++LDEADR+LE G
Sbjct: 361 TLAVGGLSLKAQEVELKLRPDVIIATPGRFIDHMRNSASFSVDTVEIMVLDEADRMLEDG 420
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD LIK+ L KP R+ D K +TL +E V
Sbjct: 421 FADELNEILTTLPKSRQTMLFSATMTSTVDRLIKIGLNKPARVMVDSQKKTVTTLVQEFV 480
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L +C + +VIIF K+ AHR +I+FGL L AELHG++ Q
Sbjct: 481 RLRPGREEKRMGYLAHVCKNLYKERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQT 540
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR+
Sbjct: 541 QRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRK 600
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G A+T ++ DR ++KA K G+K+ SR + + I++M+D++ I+QEE
Sbjct: 601 GTALTLASETDRKVVKAAVKAGKAQGAKIVSRQIEAAEVDALQAQIDEMDDEIEEIMQEE 660
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
+EE+ L EM+ K EN+I H+ EI RP+RTWF +E +KK + +A K
Sbjct: 661 KEEKQLAHVEMQVKKGENLIQHEAEIKGRPRRTWFESEHDKKQSKQAGK 709
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/440 (52%), Positives = 321/440 (72%), Gaps = 7/440 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F +NLSRPLLRA +LG++ PTPIQ+ +PLAL GRDI GSA+TGSGKTAAF +P L
Sbjct: 208 TTFASMNLSRPLLRALSSLGFNAPTPIQSRAVPLALLGRDILGSAVTGSGKTAAFMIPIL 267
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQE 240
ERL YR K A RVL+L PTRELAVQ + + +A+ D+R L+VGGLS Q
Sbjct: 268 ERLQYRDRGKGGAACRVLVLCPTRELAVQCEQVGKALAERGGLDVRFALLVGGLSLNAQA 327
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALR++PDI++ATPGR+IDHL N+ S L L +L++DEADR+LE GF+ E+ E+VR CP
Sbjct: 328 HALRTLPDILIATPGRLIDHLTNTPSFTLGALDILVIDEADRMLEAGFTDELEEIVRQCP 387
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+ RQTMLFSAT+T+ VDEL+KLSL +P+R+ D + LT+E VR+R E +
Sbjct: 388 RGRQTMLFSATMTDSVDELVKLSLDRPVRVFVDKERNTAAGLTQEFVRVRS--EETRSPA 445
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL+LC +T K IIF +K AH+++++FGL L AAELHGNLTQ QRL AL F+
Sbjct: 446 LLTLCKRTVHEKAIIFFRSKALAHQMRVVFGLCGLVAAELHGNLTQEQRLVALNDFKAGR 505
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
VD+L+ATD+A+RGLDI GV+TVINY P L YVHRVGRTARAGR+G +++ V + DR
Sbjct: 506 VDYLLATDLASRGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKGRSISLVGEPDRK 565
Query: 481 LLKAIAKRAG-SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
+LKA+ KR+ +++ RI+ +++ S +++++++++A+L EEREE++LR+A+ME K
Sbjct: 566 MLKAVMKRSDKDQIRHRIIPPEAVQAMSAKLDELKEEISAVLAEEREEKLLRQADMELRK 625
Query: 540 AENMIAHKEEIFARPKRTWF 559
+NM+ H+ EI++RP RTWF
Sbjct: 626 GQNMVEHEAEIYSRPARTWF 645
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/494 (48%), Positives = 336/494 (68%), Gaps = 20/494 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD------GASFHANSFMELNLSRP 135
D D S SE + ++ + ++E FFAP + S SF L+LSRP
Sbjct: 258 DEDGSGSESEDDDEIRKQNE-----------FFAPEEQVTELKSTSRAPASFQNLSLSRP 306
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP+++P
Sbjct: 307 ILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLYRPRKVP 366
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 367 TSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 426
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 427 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTSS 486
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI+L L KP+RL D + TL +E VR+R RE + L+ LC +T++VI+
Sbjct: 487 VDKLIRLGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYTNRVIV 546
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+A+RGLD
Sbjct: 547 FFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDLASRGLD 606
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K G+K
Sbjct: 607 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAK 666
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H+EEI +
Sbjct: 667 IVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMS 726
Query: 553 RPKRTWFVTEKEKK 566
RPKRTWF +EKEK+
Sbjct: 727 RPKRTWFESEKEKR 740
>gi|449486366|ref|XP_002191498.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Taeniopygia guttata]
Length = 757
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/560 (45%), Positives = 360/560 (64%), Gaps = 44/560 (7%)
Query: 48 AYSESVSDEHFRRRTTSVDFKITKSLQQR--------SVPIVDNDHSDSEFDQ----HED 95
A++ ++ ++ T++D KI K Q+R V + D D +++E DQ HED
Sbjct: 66 AWTAALRQLRGKKAATTLDEKIEKVRQKRKLQEREAKQVKVKDED-AEAEDDQTKKEHED 124
Query: 96 -----------YKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN-SFM 128
Y +DE F+ A +SFF D + + N SF
Sbjct: 125 CSRDEEDVESEYSLDDESIFTKADKVKVKEKKRSKKGEVGAESFFE--DASQYDDNLSFQ 182
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LERL+
Sbjct: 183 DMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI 242
Query: 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 248
Y+P++ P RVL+L PTREL +QVHS+ +++AQF+++ CL VGGL K QE ALRS PD
Sbjct: 243 YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRSGPD 302
Query: 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++RLC RQTMLF
Sbjct: 303 ILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQTMLF 362
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+TE+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 363 SATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTALLTRT 422
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE+L F+ + +D L+ATD
Sbjct: 423 FQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILVATD 482
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +LK I K
Sbjct: 483 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVKT 542
Query: 489 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI--AH 546
A + +K+RI+ + I K+ + IE +E + A+L EREER ++++E + KA+ +
Sbjct: 543 AKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKAKKQLETGK 602
Query: 547 KEEIFARPKRTWFVTEKEKK 566
KE +R+WF T +E+K
Sbjct: 603 KEAGSESLERSWFQTREERK 622
>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818015|sp|P0CQ93.1|DRS1_CRYNB RecName: Full=ATP-dependent RNA helicase DRS1
gi|338818016|sp|P0CQ92.1|DRS1_CRYNJ RecName: Full=ATP-dependent RNA helicase DRS1
gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 808
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 258/499 (51%), Positives = 351/499 (70%), Gaps = 15/499 (3%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF +NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P L
Sbjct: 222 SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL 281
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQE 240
ERL YR K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q
Sbjct: 282 ERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQA 341
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR++PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP
Sbjct: 342 HTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACP 401
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+ RQTMLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++
Sbjct: 402 RSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRS--DDSRSPS 459
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL+LC +T K IIF +K AH+++I+FGL LKAAELHGNLTQ QRL+AL F+
Sbjct: 460 LLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGT 519
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
VD+L+ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G +V+ V + DR
Sbjct: 520 VDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRK 579
Query: 481 LLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
+LKA K+A +++ RI+ +++T + +E+ +D + IL+EE+EE++LR+A+ME K
Sbjct: 580 MLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKK 639
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKE 599
+NM+ H+ EIF+RP RTWF + KEK+ + A K + G+ ++ + AE K KE
Sbjct: 640 GQNMVEHEAEIFSRPARTWFQSGKEKQASKSAGKDAY-----VGSFPSTGKSAE--KEKE 692
Query: 600 KRKREREKNLPRK-ERRKL 617
K KR + L R+ +RRK+
Sbjct: 693 KLKRGKYDGLSRRLKRRKM 711
>gi|443720455|gb|ELU10207.1| hypothetical protein CAPTEDRAFT_141736, partial [Capitella teleta]
Length = 616
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/440 (50%), Positives = 318/440 (72%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ++NLSRPLL+A +G+++PTPIQ A IP+AL G+DIC A TG+GKTAAF LP LE
Sbjct: 35 AFPDMNLSRPLLKAIANMGFTQPTPIQGATIPVALLGKDICACAATGTGKTAAFLLPVLE 94
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYRP++ P RVL+LTPTRELAVQ+H++ ++ QFT+I L GG+ K QE ALR
Sbjct: 95 RLLYRPRQAPVTRVLVLTPTRELAVQIHTVARQLTQFTNIETSLSAGGMDVKAQEAALRL 154
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDIV+ATPGR+IDHL N+ + +L+ + VLILDEADR+L+ F+ ++ E++ LC RQT
Sbjct: 155 GPDIVIATPGRLIDHLHNAPNFNLNSVEVLILDEADRMLDEYFAEQMKEVISLCATVRQT 214
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+TE+V +L +SL P+++ + + + L +E +RIR RE ++EAV+ +L
Sbjct: 215 MLFSATMTEEVKDLAAVSLNSPVKIFVNENTQVALNLRQEFIRIRPNREGDREAVVGALL 274
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TF +V++F TK+ AHRL I+ GL ++ ELHGNL+Q QRLE+L+ F+ VD L+
Sbjct: 275 KRTFHDQVMVFVQTKKQAHRLHIILGLLGIRVGELHGNLSQQQRLESLKRFKDGDVDVLL 334
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI GV+TVIN+ P Y+HRVGRTARAG+ G A+T + +R +LK +
Sbjct: 335 ATDLAARGLDIDGVRTVINFTMPSTCAHYIHRVGRTARAGKSGRAITLAGEQERKVLKEV 394
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K+A +KSR+V + +T++ + I+ +E ++ AI ++E EE+ +R E++ KA+ MI
Sbjct: 395 VKKATLPVKSRVVPQDVVTRFREKIDSLESEITAIERQEVEEKEMRITELKVNKAQKMIE 454
Query: 546 HKEEIFARPKRTWFVTEKEK 565
H+EEI +RPKR WF T E+
Sbjct: 455 HQEEIMSRPKRGWFQTHNER 474
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/493 (47%), Positives = 331/493 (67%), Gaps = 19/493 (3%)
Query: 91 DQHEDYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN-SFMELNLSR 134
D DY DE+ + A + FF D + + N SF ++NLSR
Sbjct: 196 DSETDYSSADENILTKADTLKVKEKKKKKKKGQEAGGFFE--DASQYDENLSFQDMNLSR 253
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
PLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++
Sbjct: 254 PLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQA 313
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PDI++ATP
Sbjct: 314 AVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATP 373
Query: 255 GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFSAT+T+
Sbjct: 374 GRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTD 433
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 374
+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++TF+ V+
Sbjct: 434 EVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFSDHVM 493
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGL
Sbjct: 494 LFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGL 553
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494
DI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K
Sbjct: 554 DIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKSAKAPVK 613
Query: 495 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFAR 553
+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ KE
Sbjct: 614 ARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEIQQSEAQINTAKRLLEKGKEAQNQE 673
Query: 554 PKRTWFVTEKEKK 566
P+R+WF T++E+K
Sbjct: 674 PERSWFQTKEERK 686
>gi|432110218|gb|ELK33991.1| Putative ATP-dependent RNA helicase DDX27 [Myotis davidii]
Length = 863
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/505 (46%), Positives = 337/505 (66%), Gaps = 19/505 (3%)
Query: 79 PIVDNDHSDSEFDQHEDYKPEDEDDFSNAG---------------DTKSFFAPADGASFH 123
P ++ ++ D DY DE+ + A + FF D + +
Sbjct: 127 PEGQDEEGSADEDSETDYSSSDENILTKADTLKVKERKKKKKKGQEAGGFFE--DASQYD 184
Query: 124 AN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
N SF ++NLSRPLL+A A+ + +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP
Sbjct: 185 ENLSFQDMNLSRPLLKAITAMNFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 244
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE A
Sbjct: 245 VLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAA 304
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 364
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++
Sbjct: 365 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVS 424
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE+L F+ + +D
Sbjct: 425 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLESLRRFKDEQID 484
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V + +R +L
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKML 544
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+
Sbjct: 545 KEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKR 604
Query: 543 MI-AHKEEIFARPKRTWFVTEKEKK 566
++ KE P+R+WF T++E+K
Sbjct: 605 LLEKGKEAQNHEPERSWFQTKEERK 629
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/494 (48%), Positives = 336/494 (68%), Gaps = 20/494 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAP------ADGASFHANSFMELNLSRP 135
D D S SE + ++ + ++E FFAP + S SF L+LSRP
Sbjct: 259 DEDGSGSESEDDDEIRKQNE-----------FFAPEEQVTESKSTSGAPASFQNLSLSRP 307
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP+++P
Sbjct: 308 ILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLYRPRKVP 367
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD+++ATPG
Sbjct: 368 TSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPG 427
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 428 RFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTNS 487
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC +T++VI+
Sbjct: 488 VDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYTNRVIV 547
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+A+RGLD
Sbjct: 548 FFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDLASRGLD 607
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K K G+K
Sbjct: 608 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAK 667
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ KW++ + + +V +LQEE+EE+ L +AEM+ T+ +N+I H+EEI +
Sbjct: 668 IVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMS 727
Query: 553 RPKRTWFVTEKEKK 566
RPKRTWF +EK+K+
Sbjct: 728 RPKRTWFESEKDKR 741
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/449 (51%), Positives = 318/449 (70%), Gaps = 1/449 (0%)
Query: 111 KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
K+FF+ A S + +F ++NLSRPLL+A LG++ PT +QA IPLAL G+DIC A
Sbjct: 132 KAFFSRAPVLSVNV-AFTDMNLSRPLLKAVTLLGFTSPTSVQARTIPLALMGKDICACAA 190
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAF LP LERLLYRP R+ + RVLIL PTRELA+QVHS+ + +AQ T I CL
Sbjct: 191 TGTGKTAAFMLPILERLLYRPTRMRSTRVLILLPTRELAIQVHSVGKALAQNTKIDLCLA 250
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GGL + QE +LR PDIV+ATPGR++DHL N+ S L + +L+LDEADR+L+ F
Sbjct: 251 AGGLEGRSQEASLRKSPDIVIATPGRLVDHLHNTPSFSLQAIEILVLDEADRMLDEHFLD 310
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+++E++RLCP RQT+LFSAT+T++V+EL +LSL P+R+ D + L +E VRIR
Sbjct: 311 QMNEIIRLCPVSRQTLLFSATMTDEVEELARLSLHNPVRVFVDSNTDTADNLHQEFVRIR 370
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+E ++EA++ +LC ++F ++F TK+ AHR +++ GL +K +ELHG+LTQ QRL
Sbjct: 371 SNKEADREAIVSALCLRSFKDHCLVFVPTKKQAHRQRLILGLLGIKTSELHGSLTQLQRL 430
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL+ F++ VD LIATD+AARGLDI V+TVINY+ P + Y+HRVGRTARAG+ G +
Sbjct: 431 EALKGFKEAEVDILIATDLAARGLDIENVRTVINYSMPPTVKQYIHRVGRTARAGKSGKS 490
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
VT V + R +LK I K A K+R++ + I K+ I +E ++ IL++E EE+ +
Sbjct: 491 VTLVGEKGRKVLKEIVKGAKCPPKNRVIPAEVIEKYKSKISSLESEIRDILKQEEEEKQV 550
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWF 559
R A+ME TKA NMI H +EI +RP R WF
Sbjct: 551 RVAQMEVTKANNMIVHHDEIHSRPPRVWF 579
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/481 (47%), Positives = 331/481 (68%), Gaps = 17/481 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ + G+DIC A TG+GKTAAFALP LE
Sbjct: 139 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVLE 198
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+++ CL VGGL K QE ALR+
Sbjct: 199 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRA 258
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++++C RQT
Sbjct: 259 GPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQT 318
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E VRIR RE ++EAV+ +L
Sbjct: 319 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSALL 378
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 379 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVLV 438
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 439 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 498
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I K+ IE++E V A+L+ E EE+ ++ +E + A+ ++
Sbjct: 499 VKTAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLE 558
Query: 546 H-KEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 604
K E P+R+WF + +E+K ++ A Q DL ++ K+KR+
Sbjct: 559 KGKGEANEEPRRSWFQSREERK----------------KEKIAKALQEFDLALRGKKKRK 602
Query: 605 R 605
+
Sbjct: 603 K 603
>gi|345563744|gb|EGX46729.1| hypothetical protein AOL_s00097g477 [Arthrobotrys oligospora ATCC
24927]
Length = 854
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/454 (51%), Positives = 322/454 (70%), Gaps = 4/454 (0%)
Query: 112 SFFA-PADGASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
+FFA P D + S F ++NLSRP+LR + ++ PT IQ+ IP+AL RDI G A
Sbjct: 304 AFFATPTDLPTTSLTSTFQQMNLSRPILRGLGHINFTTPTAIQSRTIPIALLARDIVGGA 363
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
+TGSGKTAA+ +P LERLLYRPK++ RV+ILTPTRELA+QVH++ K+A FTDI+ L
Sbjct: 364 VTGSGKTAAYMVPILERLLYRPKKVAQTRVVILTPTRELAIQVHAVAVKLAAFTDIKFTL 423
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VGGLS K QE LR PDIV+ATPGR IDH+RNS S D + +L+LDEADR+LE GF+
Sbjct: 424 AVGGLSLKAQEAELRQRPDIVIATPGRFIDHMRNSASFHTDGIEILVLDEADRMLEDGFA 483
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E+ E+++ PK RQTMLFSAT+T+ VD+L+++ + KP+RL D +TLT+E +RI
Sbjct: 484 DELDEILKTLPKSRQTMLFSATMTDSVDKLVRVGMQKPVRLLVDSKKSTVATLTQEFIRI 543
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R RE + A+L+ L ++ + S+ I+F +K AHR++I+FGL LKAAELHG+L+Q QR
Sbjct: 544 RPGREGGRLAMLVLLATELYKSRCIVFFRSKVYAHRVRIIFGLLGLKAAELHGSLSQEQR 603
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
++A+E FR VDFL+ATD+A+RGLDI V VIN+ P+ Y HRVGRTARAGR G
Sbjct: 604 IKAVEQFRDGTVDFLLATDLASRGLDIKNVSYVINFELPQSHEIYTHRVGRTARAGRSGR 663
Query: 470 AVTFVTDNDRSLL-KAI-AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
A+T + DR ++ KAI A + K+ SR + + + ++ + MED + AIL++E+EE
Sbjct: 664 AITLAAEADRKIVKKAIKAGQENGKVVSRTLDISKVDEMTEKLNGMEDDIEAILEDEKEE 723
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVT 561
+ L + EM+ K ENMI ++EEI +RP+RTWF T
Sbjct: 724 KQLLQVEMQLRKGENMIKYEEEIASRPRRTWFET 757
>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
(Silurana) tropicalis]
Length = 760
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/501 (46%), Positives = 340/501 (67%), Gaps = 19/501 (3%)
Query: 106 NAGDTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
AGD+ FF D + + N F E+NLSRPLL+A A+ +++PTPIQ ACIP+ L G+D
Sbjct: 165 GAGDSSGFFE--DASQYDENLMFQEMNLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKD 222
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
IC A TG+GKTAAF LP LERL+Y+P+ P RVL+L PTREL +QVH++ +AQFT+
Sbjct: 223 ICACAATGTGKTAAFMLPVLERLIYKPREAPVTRVLVLVPTRELGIQVHAVSRLLAQFTE 282
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
+ CL VGGL K QE ALRS PD+++ATPGR+IDHL N S LD + VLILDEADR+L
Sbjct: 283 VTTCLAVGGLDVKTQEAALRSGPDVLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRML 342
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
+ F ++ E++RLC +RQT+LFSAT++E+V +L +SL P+R+ + + L +
Sbjct: 343 DEYFEEQMKEIIRLCSHQRQTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQ 402
Query: 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
E VRIR RE ++EAV +L ++TF V++F+ TK+ AHR+ IL GL L+ ELHGNL
Sbjct: 403 EFVRIRPNREGDREAVACALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNL 462
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q QRLE+L F+ + +D L+ATDVAARGLDI GV+TVIN P + YVHRVGRTARA
Sbjct: 463 SQTQRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARA 522
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G+ G +V+ V + +R +LK I K+A + +K+R++ + I+K+ + I + E ++ A+LQ E
Sbjct: 523 GKAGRSVSLVGEEERKMLKEIVKKAQAPVKARVIPQDVISKFREKITKSEKEIYAVLQLE 582
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGN 584
+EE+ ++ +E + + A+ + + + P+R+WF T++E++
Sbjct: 583 KEEKEMQMSEAQISVAKKKLQPGKGEESHPERSWFQTKEERR----------------KE 626
Query: 585 EVTSAQQAEDLKIKEKRKRER 605
+++ A Q DL ++ K+KR++
Sbjct: 627 KLSHALQEFDLALRGKKKRKK 647
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/463 (50%), Positives = 325/463 (70%), Gaps = 9/463 (1%)
Query: 113 FFAPAD------GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
FFAP + AS SF L+LSRP+LR ++G+S PTPIQ IP+AL G+D+
Sbjct: 281 FFAPEEQVAEPKSASGAPASFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVV 340
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ +++ K+A FTDI
Sbjct: 341 GGAVTGSGKTGAFIVPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATFTDIT 400
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 401 FCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED 460
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD+LI++ L KP+RL D + TL +E
Sbjct: 461 GFAEELNEILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEF 520
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L+ LC +T++VI+F K+ AHR++I+FGL LKAAELHG+++Q
Sbjct: 521 VRLRPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQ 580
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR++++E FR V +L+ATD+A+RGLDI GV+TVINY P+ Y+HRVGRTARAGR
Sbjct: 581 EQRIKSVEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGR 640
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
G A T + DR ++K K G+K+ SR++ KW++ + + +V +LQE
Sbjct: 641 SGRACTIAAEPDRKVVKEAVKAGRAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQE 700
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
E+EE+ L +AEM+ T+ +N+I H+EEI +RPKRTWF +EK+K+
Sbjct: 701 EKEEKQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDKR 743
>gi|425770601|gb|EKV09069.1| hypothetical protein PDIP_65800 [Penicillium digitatum Pd1]
gi|425772047|gb|EKV10473.1| hypothetical protein PDIG_56240 [Penicillium digitatum PHI26]
Length = 1500
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/468 (50%), Positives = 320/468 (68%), Gaps = 27/468 (5%)
Query: 111 KSFFAPADGASFHAN----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K+FFAP + AN +F E NLSRP+LR A+G++ PTPIQ IP+AL G+DI
Sbjct: 286 KAFFAPEEKVDTKANMAKMTFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIV 345
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
GSA+TGSGKTAAF +P LERLL+RP+++P RV++L PT +
Sbjct: 346 GSAVTGSGKTAAFIVPILERLLFRPRKVPTSRVVVLMPTH------------------VT 387
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 388 FCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLED 447
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T+ +D+LI++ + +P+RL D STL +E
Sbjct: 448 GFADELNEILTTIPKSRQTMLFSATMTDSIDKLIRVGMNRPMRLMVDAKKNTVSTLIQEF 507
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + LL LC + +T +VIIF K+ AHR++I+FGL LKAAELHG+L+Q
Sbjct: 508 VRLRPGREDKRLGYLLHLCKEAYTKRVIIFFRQKKEAHRVRIIFGLLGLKAAELHGSLSQ 567
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR++++E FR V FL+ATDVA+RGLDI GV+TVINY P+ Y+HRVGRTARAGR
Sbjct: 568 EQRIKSVENFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGR 627
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA----GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
G A T + DR ++K +A RA G+K+ SR+V + W++ E M D+VA +LQ
Sbjct: 628 SGRACTIAAEPDRKIVK-LAVRAGKAQGAKIVSRVVEQAVADSWAQKAEDMADEVAEVLQ 686
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
EE+ E+ +AEM+ TK EN++ H EI +RPKRTWF TEK+KK+A K
Sbjct: 687 EEKTEKQFSQAEMQFTKGENLMKHGNEIMSRPKRTWFETEKDKKVARK 734
>gi|395506879|ref|XP_003757757.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Sarcophilus
harrisii]
Length = 766
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/450 (50%), Positives = 320/450 (71%), Gaps = 4/450 (0%)
Query: 118 DGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
D + + N +F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKT
Sbjct: 184 DASQYDENLTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 243
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL VGGL
Sbjct: 244 AAFALPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDV 303
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++
Sbjct: 304 KSQEAALRAGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 363
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+LC RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE +
Sbjct: 364 QLCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 423
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+QAQRLEAL F
Sbjct: 424 REAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQAQRLEALRRF 483
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +
Sbjct: 484 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE 543
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+R +LK I K A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++ +E +
Sbjct: 544 EERKMLKEIVKSAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQHSEAQ 603
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
A+ ++ E P+RTWF ++E+K
Sbjct: 604 INTAKRLLEKGNE---EPERTWFQNKEERK 630
>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 790
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 255/498 (51%), Positives = 346/498 (69%), Gaps = 15/498 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P LE
Sbjct: 205 SFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 264
Query: 186 RLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQET 241
RL YR K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q
Sbjct: 265 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAH 324
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR++PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP+
Sbjct: 325 TLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPR 384
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQTMLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++ L
Sbjct: 385 SRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRS--DDSRSPSL 442
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L+LC +T K IIF +K AH+++I+FGL LKAAELHGNLTQ QRL+AL F+ V
Sbjct: 443 LALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTV 502
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
D+L+ATD+A+RGLDI GV+TVINY P L Y HRVGRTARAGR+G +++ V + DR +
Sbjct: 503 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKM 562
Query: 482 LKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
LKA K+A +++ RI+ +++T + +E +D + IL+EE+EE++LR+A+ME K
Sbjct: 563 LKAAIKQAEADQVRHRIIPSEAVTAMKEKLEGFKDDIQEILKEEKEEKLLRQADMEIKKG 622
Query: 541 ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEK 600
+NM+ H+ EIF+RP RTWF + KEK+ + A K + S ++ T + KEK
Sbjct: 623 QNMVEHEAEIFSRPARTWFQSGKEKQASKNAGKDAYVGSFPSKDKSTETE-------KEK 675
Query: 601 RKREREKNLPRK-ERRKL 617
KR + L R+ +RRK+
Sbjct: 676 LKRGKYDGLSRRLKRRKM 693
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 321/456 (70%), Gaps = 6/456 (1%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N +F ++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 306 GFFE--DASQYDENLTFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAA 363
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ + CL
Sbjct: 364 TGTGKTAAFALPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLA 423
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F
Sbjct: 424 VGGLDVKSQEAALRAGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 483
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++++C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 484 QMKEIIQMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 543
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 544 PNREGDREAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 603
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 604 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 663
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ +
Sbjct: 664 VSLVGEEERKMLKEIVKSAKAPVKARILPQDVILKFRGKIEKMEKDVYAVLRLEAEEKEM 723
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ +E + A+ ++ E P+RTWF +++E+K
Sbjct: 724 QHSEAQINTAKRLLEKGNE---EPERTWFQSKEERK 756
>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
Length = 740
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/578 (44%), Positives = 360/578 (62%), Gaps = 38/578 (6%)
Query: 21 EYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHF------------RRRTTSVDFK 68
+Y E+ EE D + P K+ K+ DF + S EH R+ T +D K
Sbjct: 19 DYSENSDEEDDFQ-PRKQKKKENKDFDKGFQFTSAEHSLDPWNDLNKYIKRKPNTKLDDK 77
Query: 69 ITKSLQQRSVPIVDNDHSDSE--FDQHEDYKPEDEDDFSN-----------------AGD 109
I K ++ ++D E DQ +D ED+ +
Sbjct: 78 IKKVRKEYGQTGTEDDPIKIEPGIDQDDDVISLSEDELKKDIFKTKEKKSKIKNMKEKDE 137
Query: 110 TKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
F D ++ +F ++NLSRPLL+A + + +PTPIQAA IP AL GRDICG A
Sbjct: 138 VVDFEEYTDSQTY--TTFYQMNLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCA 195
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
TG+GKTAA+ LP LERLLYRP P+I RVL+L PTREL VQV+ + +++AQFT I
Sbjct: 196 ATGTGKTAAYMLPILERLLYRPLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIG 255
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288
L VGGL K+QE LR PDIV+ATPGR+IDHLRN+ + LD + VLILDEADR+L+ F
Sbjct: 256 LSVGGLDVKIQEGVLRKNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYF 315
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348
+ ++ +V+ C + RQT+LFSAT+TE+V++L +SL KP+++ D + L +E +R
Sbjct: 316 AEQMKYIVKQCSRTRQTILFSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIR 375
Query: 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
IR+ RE ++EA+L +L +TF ++F TK+ AHRL IL GL +K ELHGNLTQ Q
Sbjct: 376 IRKEREGDREAILAALVCRTFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQ 435
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
RLE L F+ + +D L+ATDVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G
Sbjct: 436 RLENLRKFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGG 495
Query: 469 YAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
+V+ + +R+L+K I K+A + +K+RI+A I K++K +E +E V ILQEE+ E+
Sbjct: 496 VSVSLAGEQERTLVKKIIKQAKNPVKNRIIAPDIIEKYNKKLESLESDVQKILQEEKSEK 555
Query: 529 ILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
L K E EA + E ++ ++ + +R+WF ++KE+K
Sbjct: 556 ELAKVENEANRIEKILKVED---GKEQRSWFQSKKERK 590
>gi|426392064|ref|XP_004062380.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Gorilla
gorilla gorilla]
Length = 575
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 316/439 (71%), Gaps = 2/439 (0%)
Query: 130 LNLSRPLLR-ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
+NLSRPLL+ A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+
Sbjct: 1 MNLSRPLLKVAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI 60
Query: 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 248
Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PD
Sbjct: 61 YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPD 120
Query: 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308
I++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLF
Sbjct: 121 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 180
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L ++T
Sbjct: 181 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 240
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATD
Sbjct: 241 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 300
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VAARGLDI GV+TVIN+ P + YVHRVGRTARAG+ G +V+ V +++R +LK I K
Sbjct: 301 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEDERKMLKEIVKA 360
Query: 489 AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-K 547
A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ K
Sbjct: 361 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGK 420
Query: 548 EEIFARPKRTWFVTEKEKK 566
E + P+R+WF T++E+K
Sbjct: 421 EAVVQEPERSWFQTKEERK 439
>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
Length = 776
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/535 (44%), Positives = 355/535 (66%), Gaps = 21/535 (3%)
Query: 107 AGDTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
A T+ FF D + + N +F ++NLSRPLL+A +G+ +PTPIQ AC+P+ L G+DI
Sbjct: 184 ADTTEGFFE--DASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDI 241
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
C A TG+GKTAAF LP LERL+Y+P+ RVL+L PTREL +QVH++ ++AQFT I
Sbjct: 242 CACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTI 301
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
CL VGGL K QE ALR+ PD+++ATPGR+IDHL N+ S +L + +LILDEADR+L+
Sbjct: 302 STCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLD 361
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
F ++ E++R+C +RQTMLFSAT++E+V +L +SL +P+R+ + + L +E
Sbjct: 362 EYFEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQE 421
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
VRIR +E ++EA++ +L ++TF V++F+ TK+ AHR+ IL GL LK ELHGNL+
Sbjct: 422 FVRIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLS 481
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QRLE+L F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAG
Sbjct: 482 QTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAG 541
Query: 466 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 525
+ G +V+ V + +R +LK I K+A +K+R++ ++ I K+ +IE++E V A+L E+
Sbjct: 542 KVGRSVSLVGETERKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEK 601
Query: 526 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK------------LAVKADK 573
EE+ + +E + + A+ + E+ P RTWF T +E+K LA++ K
Sbjct: 602 EEKEMAHSEAQISSAQKRLTKSEDEKQLP-RTWFQTNEERKKDRMAKALQDFDLALRGKK 660
Query: 574 ASIEKGK-GSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDE 627
+ K G E+T+ ++A+ +K + ER RK++R AR + ED+
Sbjct: 661 KRAQFLKQGKRKELTAEERAQLEVLKSQMFAERAAKRERKQKR----ARAIPEDQ 711
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/442 (51%), Positives = 316/442 (71%), Gaps = 1/442 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 226 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 285
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+
Sbjct: 286 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 345
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 346 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 405
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+TE+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 406 MLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 465
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+++FT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 466 TRSFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 525
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 526 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 585
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I K+ IE+ME V A+LQ E EER ++ +E + A+ ++
Sbjct: 586 VKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEREMQHSEAQINAAQRLLE 645
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE P+R+WF T++E+K
Sbjct: 646 KGKEAPDKEPERSWFQTKEERK 667
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/442 (51%), Positives = 316/442 (71%), Gaps = 1/442 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF I CL VGGL K QE ALR+
Sbjct: 248 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCSITTCLAVGGLDVKSQEAALRA 307
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I ++ IE+ME V A+LQ E EER ++++E + A+ ++
Sbjct: 548 VKAAKAPVKARILPQDVILRFRDRIEKMEKDVYAVLQLEAEEREMQQSEAQINTAKRLLE 607
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE P+R+WF T++E+K
Sbjct: 608 KGKEAPDQEPERSWFQTKEERK 629
>gi|345492254|ref|XP_001602245.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Nasonia
vitripennis]
Length = 787
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/441 (50%), Positives = 315/441 (71%), Gaps = 3/441 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +NLSRPLL+A ++ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPTLE
Sbjct: 155 TFYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLE 214
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYRP RVL+L PTREL VQV+ + ++++QFT + L VGGL K+QE+ LR
Sbjct: 215 RLLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQESVLRK 274
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDIV+ATPGR+IDHL N+ + LD + VLILDEADR+L+ F+ ++ +VR C + RQT
Sbjct: 275 NPDIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYFAEQMKHIVRQCARTRQT 334
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L +L
Sbjct: 335 ILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALI 394
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TF ++F TK+ AHRL I+ GL +K ELHGNL+Q QRLE L F+ + +D L+
Sbjct: 395 CRTFHDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFKDEEIDVLL 454
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +RSL+K +
Sbjct: 455 ATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEV 514
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K+A + +K+RI+ I K++K ++ +E+ V IL+EER++R + K E +A +AENM+
Sbjct: 515 IKQAKNPVKNRIIPPDIIEKYNKKLQSIEEDVENILEEERQDREIAKIENQANRAENMLK 574
Query: 546 HKEEIFARPKRTWFVTEKEKK 566
+ ++ +R+WF T+KE++
Sbjct: 575 ESD---SKDQRSWFQTKKERQ 592
>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
Length = 758
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/512 (45%), Positives = 341/512 (66%), Gaps = 24/512 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ++NLSRPLL+A A+ +++PTPIQ ACIP+ L G+DIC A TG+GKTAAF LP LE
Sbjct: 182 TFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLE 241
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P+ P RVL+L PTREL +QVH++ ++AQFT++ CL VGGL K QE ALRS
Sbjct: 242 RLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALRS 301
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+++ATPGR+IDHL N S L+ + VLILDEADR+L+ F ++ E++RLC +RQT
Sbjct: 302 GPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQT 361
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT++E+V +L +SL P+R+ + + L +E VRIR RE ++EAV +L
Sbjct: 362 LLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALL 421
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TF V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 422 TRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 481
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN P + YVHRVGRTARAG+ G +V+ V + +R +LK I
Sbjct: 482 ATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEI 541
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K+A + +K+R++ + I+K+ I + E ++ A++Q E+EER ++ +E + + A+ +
Sbjct: 542 VKKAQAPVKARVIPQDVISKFRDKITKSEKEIYAVMQLEKEEREMQMSEAQISVAKKKLQ 601
Query: 546 HKEEIFARPKRTWFVTEKEKK------------LAVKADKA-----SIEKGKG------- 581
++ A+P+R+WF T E++ LA++ K S K KG
Sbjct: 602 QEKGGEAQPERSWFQTRDERRKEKLSHALQEFDLAMRGKKKRKKFLSDSKKKGELTSEER 661
Query: 582 SGNEVTSAQQAEDLKIKEKRKREREKNLPRKE 613
S EV AQ + K RK +R + +P +E
Sbjct: 662 SQFEVLKAQMYAERAAKRDRKPKRARAMPPEE 693
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/501 (46%), Positives = 337/501 (67%), Gaps = 18/501 (3%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAG--------------DTKSFFAPADGASFHAN-S 126
+N+ + + DY EDE+ + A ++ FF D + + + +
Sbjct: 128 ENEAGSKDEESETDYSSEDEEILTKADTLKVKEKKKKKKGQESGGFFE--DASEYDKSLT 185
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LER
Sbjct: 186 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 245
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+
Sbjct: 246 LIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 305
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTM
Sbjct: 306 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 365
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 366 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 425
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+A
Sbjct: 426 RTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVA 485
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 486 TDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIV 545
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
K A + +K+RI+ + I K+ IE+ME V A+LQ E EER ++++E + A+ +++
Sbjct: 546 KAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEREVQQSEAQIDTAQRLLSK 605
Query: 547 -KEEIFARPKRTWFVTEKEKK 566
K+ P+R+WF T++E+K
Sbjct: 606 GKQTADQEPERSWFQTKEERK 626
>gi|395752428|ref|XP_003779421.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 2
[Pongo abelii]
Length = 796
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/488 (47%), Positives = 324/488 (66%), Gaps = 35/488 (7%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 175 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 232
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL
Sbjct: 233 TGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLA 292
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD--------- 281
VGGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEAD
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACP 352
Query: 282 ----------------------RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L
Sbjct: 353 HAPTLWLLHLPFPQPGAISCPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDL 412
Query: 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT 379
+SL P+R+ + + L +E +RIR RE ++EA++ +L ++TFT V++F+ T
Sbjct: 413 ASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQT 472
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV
Sbjct: 473 KKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGV 532
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499
+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K A + +K+RI+
Sbjct: 533 KTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILP 592
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTW 558
+ I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ KE + P+R W
Sbjct: 593 QDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERGW 652
Query: 559 FVTEKEKK 566
F T++E+K
Sbjct: 653 FQTKEERK 660
>gi|449684384|ref|XP_002156411.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Hydra magnipapillata]
Length = 544
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/435 (49%), Positives = 312/435 (71%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A LG+ PT IQ++ IP+AL G+D+C A TGSGKTAAF LP LERLL+
Sbjct: 1 MNLSRPLLKAINELGFEHPTKIQSSTIPIALLGKDLCACATTGSGKTAAFMLPILERLLF 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+PK+ ++L++ + V V+S+ E +A+F++I+ L GGL ++ QE LR PD+
Sbjct: 61 KPKQTAXTKILLVFICKNFCVXVYSVSESLAKFSNIQLGLATGGLDSRSQEAILRKNPDV 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
V+ATPGR+IDHL N+ S +L + +L+LDEADR+LE F ++ E++RLCP+ RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNTPSFNLQTIEILVLDEADRMLEEHFHDQMKEIIRLCPRGRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T++V+ L+ LSL P++L D + S+L +E VRIR RE ++ AV+++LC ++F
Sbjct: 181 ATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEFVRIRSTREADRLAVVVALCCRSF 240
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
+ ++F TK AH+L+I+FGL LKAAELHGNLTQ QRLEALE F+ VD L+ATD+
Sbjct: 241 NQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQLQRLEALEKFKNNEVDILVATDL 300
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
AARGLDI+GV+TVI++ P + SY+HRVGRTARAG+ G ++T V + +R +LK + K A
Sbjct: 301 AARGLDIVGVKTVISFNMPTTIKSYIHRVGRTARAGKAGRSITLVGEKERKMLKEVVKNA 360
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 549
+K+RI++ + + K+ +E E + IL+EE + LR AEME KA+N+I H +E
Sbjct: 361 KIPVKNRILSTEVVEKYKNKLESFEKDIKEILKEEESAKQLRVAEMEMNKAKNLIEHHDE 420
Query: 550 IFARPKRTWFVTEKE 564
I +RP +T+ T+K+
Sbjct: 421 IMSRPAKTFIKTQKQ 435
>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
gi|341940504|sp|Q921N6.3|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
Length = 760
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/493 (48%), Positives = 333/493 (67%), Gaps = 20/493 (4%)
Query: 91 DQHEDYKPEDEDDFSNAGDT---------------KSFFAPADGASFHAN-SFMELNLSR 134
D DY EDE+ + A DT FF D + + + SF ++NLSR
Sbjct: 137 DSETDYSSEDEEILTKA-DTLKVKEKKKKKKGQAAGGFFE--DASEYDKSLSFQDMNLSR 193
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
PLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++
Sbjct: 194 PLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQA 253
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PDI++ATP
Sbjct: 254 AVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATP 313
Query: 255 GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFSAT+T+
Sbjct: 314 GRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTD 373
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 374
+V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +TFT V+
Sbjct: 374 EVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVM 433
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGL
Sbjct: 434 LFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGL 493
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494
DI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K
Sbjct: 494 DIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVK 553
Query: 495 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFAR 553
+RI+ + I K+ IE++E V A+LQ E EE+ ++++E + A+ ++A KE
Sbjct: 554 ARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQE 613
Query: 554 PKRTWFVTEKEKK 566
P+R+WF T++E+K
Sbjct: 614 PERSWFQTKEERK 626
>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
Length = 563
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/451 (49%), Positives = 316/451 (70%), Gaps = 4/451 (0%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A A+ + PTPIQ A IP+AL G+DIC A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+PK+ RVL+L PTREL +QVHS+ ++AQFT+I CL VGGL K+QE LR PDI
Sbjct: 61 KPKQAAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGPDI 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
V+ATPGR+IDHL N+ S L ++ +LILDEADR+L+ F ++ E++R+C RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T++V +L+ +SL P+RL + + L +E +RIR RE ++EA+ +LCS+TF
Sbjct: 181 ATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSRTF 240
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
VI+F TK+ HRL I+ G+ L ELHGNL+Q QRLE L F++ ++D ++ATD+
Sbjct: 241 HDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLATDL 300
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
AARGLDI G++T+IN+ P + YVHRVGRTARAG+ G +V+ + +R +LK I KRA
Sbjct: 301 AARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVKRA 360
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 549
+ +KSR+V + K+ IE+ME + I++ E EE+ LR +E++ KA+ +I H +E
Sbjct: 361 RNPVKSRVVPPDIVAKYRDKIEKMETDIEKIIKLEEEEKELRISELQVNKAKAIIEHHDE 420
Query: 550 IFARPKRTWFVTEKEKKLAVKADKASIEKGK 580
I++RPKR+WF + E+ A+K + GK
Sbjct: 421 IYSRPKRSWFQSHMER----MAEKEKLTLGK 447
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/489 (47%), Positives = 326/489 (66%), Gaps = 5/489 (1%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD--GASFHANSFMELNLSRPLLRACEA 142
H+ D D ED +D A +FFA + A A +F +NLSR +L+ A
Sbjct: 192 HAVPHPDDAADSGSEDGEDAIEAERRNAFFAAEETKSAKATATAFHSMNLSRQILKGLAA 251
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
+G+ KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRP+ RV IL
Sbjct: 252 VGFDKPTPIQAKTIPVALEGKDLVGGAVTGSGKTAAFLIPILERLLYRPRNAATTRVAIL 311
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA+Q ++ +K+A TDI +GGL+++ QE L+ PDIV+ATPGR ID R
Sbjct: 312 MPTRELALQCFNVAKKLAAHTDITFGQAIGGLNSREQEKQLKLRPDIVIATPGRFIDLER 371
Query: 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
NS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD+LI++
Sbjct: 372 NSASFAVNTIEILVLDEADRMLEEGFADELNEILTKIPKSRQTMLFSATMTSKVDDLIRV 431
Query: 323 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382
+ +P+RL D S L +E VR+R+ RE + A L+ LC + +T +VIIF K+
Sbjct: 432 GMQRPVRLMVDAQKATVSGLVQEFVRLRQGREGKRLAYLMVLCEQIYTDRVIIFFRQKKE 491
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
AHR++++F LA +KAAELHGN+TQ QR+ A+E FR FL+ATD+A+RG+DI G++TV
Sbjct: 492 AHRVRVIFALAGMKAAELHGNMTQEQRINAIETFRTGKASFLLATDLASRGIDIKGIETV 551
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVA 499
INY P+ Y+HRVGRTARAGR G A T + DR ++KA K G+ +K R V
Sbjct: 552 INYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKAAVKAGKAQGAVIKQRSVE 611
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 559
+ W ++ M + + +L+EE+EER L+ + + TKA+N++ +++EI ARPK+TWF
Sbjct: 612 ASDVDAWQTRLDAMAEDIEDVLREEKEERALQAVDRDLTKADNIVKYEDEIKARPKKTWF 671
Query: 560 VTEKEKKLA 568
+EK+K+ A
Sbjct: 672 ESEKDKQAA 680
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum NZE10]
Length = 1056
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/517 (45%), Positives = 340/517 (65%), Gaps = 14/517 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFH----ANSFMELNLSRPLLRACEALGYSKPTPIQAA 154
E DD + +FFA DG S A +F +NLSRP+L+ ++G+ KPTPIQ
Sbjct: 503 EAGDDAAEREKANAFFA--DGESKKTGPTATAFHSMNLSRPILKGLASVGFDKPTPIQMK 560
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214
+P+AL G+D+ G A+TGSGKTAAF +P LERLLYRPKR RV IL PTRELA+Q +
Sbjct: 561 AVPVALEGKDLVGGAVTGSGKTAAFLIPILERLLYRPKRTSMTRVAILMPTRELALQCFN 620
Query: 215 MIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274
+ +K++ FTDI + VGGLS K Q+ L+ PDIV+ATPGR ID RN S+D+ + +
Sbjct: 621 VAKKLSAFTDISVAMAVGGLSIKEQDKELKMRPDIVIATPGRFIDLERNYRSLDVGTIEI 680
Query: 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334
L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD+L++ L +P+RL D
Sbjct: 681 LVLDEADRMLEEGFADELNEILSKIPKSRQTMLFSATMTTKVDDLVRSGLQRPVRLMVDA 740
Query: 335 SAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA 394
+ S LT+E VR+R RE + L+ LC K +T +VIIF K+ AHR++++F L
Sbjct: 741 QKQTVSGLTQEFVRLRPGREQKRLGYLMYLCEKVYTDRVIIFFRQKKEAHRVRVIFALCG 800
Query: 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454
LKAAELHG+++Q QR+ ++E FR +L+ATD+A+RGLDI G+ TVINY P+ Y
Sbjct: 801 LKAAELHGSMSQEQRINSIEAFRTGKASYLLATDLASRGLDIKGIDTVINYEAPQSHEIY 860
Query: 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIE 511
+HRVGRTARAGR G A T + DR ++KA K A G+ +K R + + W +
Sbjct: 861 LHRVGRTARAGRSGCACTLAAEPDRRVVKAAVKTAKAQGAIIKQRTIEAHDVDAWVARLA 920
Query: 512 QMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 571
+E V +++EE+EER L +A+ + T+A+N+ H++EI +RPK+TWF +EK+K+ A
Sbjct: 921 ALEQDVEDVMREEKEERALSQADRDLTRADNIAKHEDEIMSRPKKTWFESEKDKQAAKDK 980
Query: 572 DKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN 608
K ++ +G V A++ + +++KR ++K+
Sbjct: 981 GKMAL-----NGEPVVKAEKKKGKLSNKEKKRLQDKD 1012
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/449 (48%), Positives = 310/449 (69%), Gaps = 8/449 (1%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
SFHA ++LSRP+ + A+G+++PTPIQA IP+A+ G+D+ G A TGSGKTAAF
Sbjct: 285 GSFHA-----MSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAF 339
Query: 180 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
+P LERLLYRPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG S++ Q
Sbjct: 340 LIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQ 399
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E L++ PD+V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF +++E++
Sbjct: 400 EVMLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTI 459
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQTMLFSAT+T VD+LI++ + KP+RL D LT+E +R+R+ +E + A
Sbjct: 460 PKSRQTMLFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLA 519
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+ +C K +T +VIIF K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR
Sbjct: 520 YLMYICEKIYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSG 579
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+L+ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR
Sbjct: 580 KSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDR 639
Query: 480 SLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
++K K++ GSK+ SR V + +W + + +ED++ +L+EE+EER L E +
Sbjct: 640 KVVKQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEERTLSITERD 699
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ N+I H+ EI +RPKR WF TEKEK
Sbjct: 700 LKRGMNLIEHEAEIKSRPKRVWFETEKEK 728
>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
Length = 725
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/562 (44%), Positives = 349/562 (62%), Gaps = 40/562 (7%)
Query: 21 EYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHF------------RRRTTSVDFK 68
+Y E+ EE D + P K+ K+ DF + + + EH R+ T +D K
Sbjct: 20 DYSENSDEEDDYQ-PRKQKKKESKDFDSDFQFTAAEHKQDPWNDLSKYIKRKPNTKLDDK 78
Query: 69 ITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSF--------------- 113
I K ++ ++D E DQ + +D+D S + D
Sbjct: 79 IKKVRKEHKQAGTEDDPVKIEPDQDDLKTGQDDDTISLSEDELKKDTFKTKKKKGKMKNL 138
Query: 114 ----------FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
F + +A +F ++NLSRPLL+A A+ + PTPIQAA IP+AL GR
Sbjct: 139 MKEKDQETIDFEEYTNSQTYA-TFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGR 197
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQF 222
DICG A TG+GKTAA+ LP LERLLYRP PAI RVL+L PTREL VQV+ + +++AQF
Sbjct: 198 DICGCAATGTGKTAAYMLPVLERLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLAQF 257
Query: 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282
T + L VGGL K+QE LR PDIV+ATPGR+IDHLRN+ + LD + VLILDEADR
Sbjct: 258 TTVEVGLSVGGLDVKIQEGVLRKNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADR 317
Query: 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342
+L+ F+ ++ +V+ C + RQT+LFSAT+TE+V +L +SL KP+++ D + L
Sbjct: 318 MLDEYFAEQMKYIVKQCSRTRQTILFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNL 377
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
+E +RIR+ RE ++EA+L +L +TF ++F TK+ AHRL IL GL +K ELHG
Sbjct: 378 RQEFIRIRKEREGDREAILAALVCRTFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHG 437
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462
NLTQ QRLE L F+ + +D L+ATDVAARGLDI GV+TVIN+ P L Y+HRVGRTA
Sbjct: 438 NLTQPQRLENLRKFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTA 497
Query: 463 RAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
RAGR G +V+ + +RSL+K + K+A +++K+RI+ I K++K ++ +E V ILQ
Sbjct: 498 RAGRGGVSVSLAGEQERSLVKEVIKQAKNQVKNRIIPPDIIEKYNKKLQSLESDVEKILQ 557
Query: 523 EEREERILRKAEMEATKAENMI 544
EE+ E+ L K E EA + E ++
Sbjct: 558 EEKSEKELAKVENEANRVEKLL 579
>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 1617
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/530 (45%), Positives = 339/530 (63%), Gaps = 33/530 (6%)
Query: 124 ANSFMELNL-SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
A SF + L SRP+LR A G+ PT IQA IP + G D+ G A+TGSGKTAAF LP
Sbjct: 262 AMSFQAMRLFSRPILRGIAAAGFDTPTQIQAKTIPFGIGGHDVVGQAVTGSGKTAAFLLP 321
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERLL+RP +P RV+ILTPTRELAVQ H + K+A FT I L VGG S K E +
Sbjct: 322 ILERLLHRPTNVPKTRVVILTPTRELAVQCHKVAVKLAAFTPITMALTVGGTSFKSSEAS 381
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LRS PDIV+ TPGR IDH+RNS S +D + +L+LDEADR+L+ GF+ E++E+V+ P+
Sbjct: 382 LRSRPDIVIGTPGRFIDHMRNSPSFAVDGVEILVLDEADRMLQDGFADELNEIVQTLPRG 441
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT+ VD+LI++ L++P+R+ AD ++ TLT+ VR+R+ RE + L+
Sbjct: 442 RQTLLFSATMGASVDQLIRVGLSRPVRIQADDKSRTAGTLTQAFVRLRQGREDRRLGYLV 501
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
LC+ + IIF K++ H +I+FGL L ELHGN+ QA+R+ +LE FR+ V
Sbjct: 502 ELCTTLYRDHAIIFFREKRSIHEARIVFGLLGLTCEELHGNIKQAERIASLESFRRGEVQ 561
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
FL+A+D+A+RGLDI GV+TVINY P++L Y+HR+GRTARAGR G AVT V++ DR +
Sbjct: 562 FLLASDLASRGLDIKGVETVINYEVPKNLDDYIHRIGRTARAGRRGLAVTIVSEKDRKFV 621
Query: 483 KAIAK--RAGS-----------------------KLKSRIVAEQSITKWSKIIEQMEDQV 517
K + K RAG +++S+ V + +W I+ M + V
Sbjct: 622 KEVVKAMRAGGDKEQKEKKGKTVGETGLPMPQQVRIRSQQVDPAAADRWQAKIDAMAEDV 681
Query: 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVT--EKEKKLAVKADKAS 575
A I+ EER+ R + +AEME T+ EN++ H++EI ARPKRTWF + +KE K ++ +A
Sbjct: 682 AEIVAEERQVRAMAQAEMEVTRGENLLKHRDEIMARPKRTWFESGRDKEAKRQLQRREAQ 741
Query: 576 IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLE 625
E+ ++ T E L+ + K K L RK+ +KL+A ++ LE
Sbjct: 742 AER-----SDETKKSTMERLRDQLKAKHGGSGWLSRKDTKKLDAKKDRLE 786
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/503 (47%), Positives = 337/503 (66%), Gaps = 31/503 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ++NLSRP+L+A ALG+ +PTPIQ AC+P+ L G+D+C A TG+GKTAAF LP LE
Sbjct: 167 TFDDMNLSRPILKAITALGFKQPTPIQKACVPVGLLGKDLCACAATGTGKTAAFMLPVLE 226
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VGGL K QE ALR+
Sbjct: 227 RLVYKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVGGLDLKSQEAALRA 286
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++RLC RQT
Sbjct: 287 GPDILIATPGRLIDHLHNTPSFELTHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQT 346
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+TE+V +L +SL +P+R+ + + L +E VRIR RE ++EAV+ +L
Sbjct: 347 MLFSATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQEFVRIRPHREGDREAVVAALL 406
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TF V++F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ + +D L+
Sbjct: 407 TRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQIDILV 466
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK +
Sbjct: 467 ATDVAARGLDIDGVKTVINFTMPGTVKHYVHRVGRTARAGRSGRSVSLVGESERKMLKEV 526
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A S +K+RI+ + I K+ +I ++E V A+++ EREER E+ A++A+ +A
Sbjct: 527 VKSAKSTVKARILPPEVILKFRDLISKLEKDVEAVMKLEREER-----ELAASEAKLSVA 581
Query: 546 HKEEIFA----RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
K + + +R WF T++E+K + ++ A Q DL I+ K+
Sbjct: 582 QKRLTDSASSDQSQRVWFQTQQERK----------------QSRMSKALQEFDLAIRGKK 625
Query: 602 KRE------REKNLPRKERRKLE 618
KRE R+K L +ER + E
Sbjct: 626 KREKFLKDGRKKELTSEERAQFE 648
>gi|378728301|gb|EHY54760.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 813
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/504 (48%), Positives = 333/504 (66%), Gaps = 17/504 (3%)
Query: 82 DNDHSDSEFDQHEDYKPED----------EDDFSNAGDTKSFFAPADGA----SFHANSF 127
D D SDS+ P+D E D +FFAP D S A+SF
Sbjct: 229 DEDASDSDSVASPMAHPDDLASDAGSETSESDAEEQAKRAAFFAPEDKTTNTNSKAASSF 288
Query: 128 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 187
+ +LSRP+L+A AL ++ PTPIQA IP+AL G D+ GSA+TGSGKTAAF LP LERL
Sbjct: 289 QQFSLSRPILKALAALSFTAPTPIQARAIPVALQGLDVVGSAVTGSGKTAAFLLPILERL 348
Query: 188 LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 247
LYRP+++P RV IL PTRELAVQ +++ +A+FTDI VVGG + QE L+ P
Sbjct: 349 LYRPRKVPTTRVAILMPTRELAVQCYNVATALARFTDITFAQVVGGFPLREQEAILKKRP 408
Query: 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307
D+V+ATPGR IDH+RNS S ++++ +L+LDEADR+LE GF E++E+++ PK RQTML
Sbjct: 409 DVVIATPGRFIDHMRNSASFVVENIEILVLDEADRMLETGFEDELNEILKTIPKGRQTML 468
Query: 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 367
FSAT+T+ VD+L+++ + +P+RLS D S L +E VR+R RE + A L LC
Sbjct: 469 FSATMTDSVDKLVRVGMNRPVRLSVDAKKSTVSGLVQEFVRLRPGRENLRLATLCVLCKN 528
Query: 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427
FT + IIF K+ AHR++I+FGL LKA ELHG+++Q QR+ A+ FR+ L+AT
Sbjct: 529 FFTERTIIFFRQKKEAHRVRIVFGLLGLKAGELHGSMSQEQRISAVNAFREGKTTHLLAT 588
Query: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487
D+A+RGLDI V TV+NY P+ Y+HRVGRTARAGR G A T + DR +++A K
Sbjct: 589 DLASRGLDIKNVMTVVNYEAPQTHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVRAAVK 648
Query: 488 RA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
A G+K+ SR+V Q + + IE ME ++ IL+EE+EE+ L + E + T+ EN++
Sbjct: 649 SARQQGAKVVSRVVDAQEVDAMNAQIEAMESEIEEILKEEKEEKQLSQVEQQLTRGENLV 708
Query: 545 AHKEEIFARPKRTWFVTEKEKKLA 568
H+ EI ARPKRTWF TEKEK+ A
Sbjct: 709 KHEAEIMARPKRTWFETEKEKQQA 732
>gi|405120234|gb|AFR95005.1| ATP-dependent RNA helicase DRS1 [Cryptococcus neoformans var.
grubii H99]
Length = 813
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/516 (49%), Positives = 348/516 (67%), Gaps = 32/516 (6%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF +NLSRPLLRA +L ++ PTPIQA IPLAL GRDI GSA+TGSGKTAAF +P L
Sbjct: 204 SSFAAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL 263
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQ--FTDIRCCLVVGGLSTKMQE 240
ERL YR K A RVL+L PTRELAVQ ++ + +A+ D+R L+VGGLS Q
Sbjct: 264 ERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQA 323
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR++PDI++ATPGR+IDHL N+ S L L VL++DEADR+LE GF+ E+ E+++ CP
Sbjct: 324 HTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACP 383
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+ RQTMLFSAT+T+ VDEL+KLSL KP+R+ DP LT+E VRIR + ++
Sbjct: 384 RSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIR--SDDSRSPS 441
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ-------------- 406
LL+LC +T K IIF +K AH+++I+FGL LKAAELHGNLTQ
Sbjct: 442 LLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQGSLPSKYRIGVM 501
Query: 407 ---AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
+QRL+AL F+ VD+L+ATD+A+RGLDI GV+TVINY P L Y HRVGRTAR
Sbjct: 502 LTSSQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTAR 561
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
AGR+G +++ V + DR +LKA K+A +++ RI+ +++T + +E +D + IL+
Sbjct: 562 AGRKGRSISLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAVKEKLEGFKDDIQEILK 621
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGS 582
EE+EE++LR+A+ME K +NM+ H+ EIF+RP RTWF + KEK+ + A K + S
Sbjct: 622 EEKEEKLLRQADMEIKKGQNMVEHEAEIFSRPARTWFQSGKEKQASKSAGKDAYVGSFPS 681
Query: 583 GNEVTSAQQAEDLKIKEKRKREREKNLPRK-ERRKL 617
++ T K KEK KR + L R+ +RRK+
Sbjct: 682 KDKSTE-------KEKEKLKRGKYDGLSRRVKRRKM 710
>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Acyrthosiphon pisum]
Length = 771
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/459 (49%), Positives = 317/459 (69%), Gaps = 14/459 (3%)
Query: 122 FHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
F N SF ++N+SRPL++A AL Y PTPIQAA IP+AL GRDICG A TG+GKTAA+
Sbjct: 161 FEENASFYQMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYM 220
Query: 181 LPTLERLLYRPKRI-PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LERLLYRPK P RVL+L PTREL VQV+ + +++AQFT + L VGGL K+Q
Sbjct: 221 LPILERLLYRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQ 280
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E+ LR PD+V+ATPGR++DHL+N+ S L DL VL+LDEADR+L+ F+ ++ E++ +C
Sbjct: 281 ESILRKNPDVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMC 340
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
+ RQTMLFSAT+T+ V++L +SL+KP+++ D + L +E VR+R+ +E +++A
Sbjct: 341 ARTRQTMLFSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDA 400
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L +L +TF +IF TK AHR+KIL GL LKA ELHGNL+Q QRLEAL F+ +
Sbjct: 401 TLAALVCRTFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDE 460
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D LIATDVAARGLDI GV+ VINY P + Y+HRVGRTARAGR G +V+ ++ DR
Sbjct: 461 ELDLLIATDVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDR 520
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
+LK + ++A + +K+R++ + + K+ + ++ + ++V I+ EE EER + + E A K
Sbjct: 521 KVLKEVIRKAKNPVKNRVIPIEILDKYKERVDSLRNEVKCIMTEEYEERQMNRTEEFAEK 580
Query: 540 AENM--------IAHKEEIFARPKRTWFVTEKEKKLAVK 570
E M I K+E KR WF T+KE+ A K
Sbjct: 581 TEKMAKTSIGTLIKKKDE----KKRDWFQTQKERGEAKK 615
>gi|354480665|ref|XP_003502525.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Cricetulus
griseus]
Length = 788
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/442 (50%), Positives = 314/442 (71%), Gaps = 1/442 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 212 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 271
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ RVL+L PTREL +QVHS+ +++AQF + CL VGGL K QE ALR+
Sbjct: 272 RLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSVTTCLAVGGLDVKSQEAALRA 331
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 332 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 391
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 392 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 451
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 452 MRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 511
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 512 ATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 571
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++++E + A+ ++
Sbjct: 572 VKAAKAPVKARIIPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQQSEAQIDTAKRLLE 631
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE P+R+WF T+ E+K
Sbjct: 632 KGKETADQEPERSWFQTKAERK 653
>gi|390333392|ref|XP_783077.3| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Strongylocentrotus purpuratus]
Length = 734
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 312/442 (70%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A +F E+NLSRP+LRA L +++PTPIQ+A IP+AL G+DIC A TG+GKTAAF LP
Sbjct: 152 AMAFTEMNLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPV 211
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+ERLLY+PK+ P RVL++TPTREL VQ+ ++ ++ +FT+I CCL VGGL K+QE AL
Sbjct: 212 VERLLYKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAAL 271
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R PDIV+ATPGR+IDHL N+ + L + VLILDEADR+L+ F ++ E++++C R
Sbjct: 272 RKGPDIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVAR 331
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QTMLFSAT+T+ V +L +SL P+R+ + + L +E +RIR RE ++EA++ +
Sbjct: 332 QTMLFSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSA 391
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
LC + F ++F TK+ AHRL ++ GL +K ELHG+L+Q +R+E L +F++ +D
Sbjct: 392 LCCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDI 451
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI GV+TVIN+ P YVHRVGRTARAGR G +V+ + +R +LK
Sbjct: 452 LVATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLK 511
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 543
+ KRA + +KSRI+ + + K+ I +E+ + +L+ EREE+ +R E++ KA M
Sbjct: 512 ELVKRAKNPVKSRIIPQGVVAKYRDKIASLEEDIEEVLRLEREEKEMRTTELQLQKATMM 571
Query: 544 IAHKEEIFARPKRTWFVTEKEK 565
+ H EI +RPKR+WF + KE+
Sbjct: 572 LNHHSEIMSRPKRSWFQSHKER 593
>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 495
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/487 (49%), Positives = 316/487 (64%), Gaps = 46/487 (9%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF +L LSRPLLR ++G+ PTPIQA+ +P+A+ GRD+C SA+TGSGKTAAF LP +
Sbjct: 2 DSFSQLGLSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPVM 61
Query: 185 ERLLY---------------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
ER+L + + A R L+LTPTRELA Q SM+ +A+FTD+R L
Sbjct: 62 ERILQRGGGRTTMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAAL 121
Query: 230 VVGGLSTKMQETA-LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288
+VGG M + A LRS PD+VVATPGR++DH+ NS VDLDDL LILDEADRLL+LGF
Sbjct: 122 IVGGAKNVMSQAAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLGF 181
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST------- 341
E+HE+V+ CP RQT+LFSAT++ VD+LIKLSL +P+R+ A K+ +
Sbjct: 182 QDEVHEIVKACPTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVEVA 241
Query: 342 --LTEEVVRIRRMRE-VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E VRIR E VN+E +LL+L ++TFTS+VI+F TK AAHRL I+ GL +K
Sbjct: 242 PRLEQEFVRIRAGNEGVNREGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIKCT 301
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRLEALE FR+ +VD L+ATD+AARGLDI GV+ VIN+ P + +YVHR+
Sbjct: 302 ELHGNLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRI 361
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK--------------------LKSRIV 498
GRTARAGR G + T + + R L+K + K A K ++SR +
Sbjct: 362 GRTARAGRGGNSCTLIGEGRRYLMKEVIKDAEEKSRRASAGRKQTQDSASTSGVIRSRTI 421
Query: 499 AEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTW 558
+ + I +E V +L E RI R AEMEA +A+N+I H EI RP++ W
Sbjct: 422 PPPVVAHFVAKINFLEQHVREVLDAEAVARIDRIAEMEAMRAQNIIEHSSEIKQRPQKEW 481
Query: 559 FVTEKEK 565
F + KE+
Sbjct: 482 FASSKER 488
>gi|410931566|ref|XP_003979166.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like, partial
[Takifugu rubripes]
Length = 697
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 343/520 (65%), Gaps = 35/520 (6%)
Query: 111 KSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
+SFF D + ++ +F ++NLSRP+L+A ALG+ +PTPIQ AC+P+ L GRD+C A
Sbjct: 170 ESFFE--DASQYNDQLTFDDMNLSRPILKAITALGFKQPTPIQKACVPVGLLGRDLCACA 227
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
TG+GKTAAF LP LERL+Y+P+ RVL+L PTREL +QVH++ ++AQFT I CL
Sbjct: 228 ATGTGKTAAFVLPVLERLVYKPRTSQVTRVLVLVPTRELGIQVHAVTRQLAQFTSITTCL 287
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
VGGL K QE ALR+ PD+++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F
Sbjct: 288 AVGGLDLKSQEVALRAGPDVLIATPGRLIDHLHNTPSFELSHIEILILDEADRMLDEYFE 347
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
++ E++RLC RQTMLFSAT++E+V +L +SL +P+R+ + + L +E VRI
Sbjct: 348 EQMKEIIRLCSYNRQTMLFSATMSEEVKDLAAVSLKQPVRIFVNSNTDVAPYLRQEFVRI 407
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R +E ++EAV+ +L ++TF V+ F+ T++ AHRL IL GL LK ELHG L+Q QR
Sbjct: 408 RPNKEGDREAVVAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQR 467
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
LE L F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G
Sbjct: 468 LENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGR 527
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
+V+ V +++R +LK + K A + +K+R++ + I K+ +I ++E V A+++ EREER
Sbjct: 528 SVSLVGESERKILKEVVKSAKTTVKARVLPAEVILKFRDLISKLEKDVEAVIKLEREER- 586
Query: 530 LRKAEMEATKAENMIAHKE----EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNE 585
E+ A++A+ +A K+ + +R WF T++E+K +
Sbjct: 587 ----ELAASEAKLSVAQKKLDGSATSTQSQRVWFQTQQERK----------------QSR 626
Query: 586 VTSAQQAEDLKIKEKRKRE-------REKNLPRKERRKLE 618
++ A Q DL ++ K+KRE R+K L +ER E
Sbjct: 627 LSKALQEFDLALRGKKKREKFLKDSKRKKELTPEERAHFE 666
>gi|397475811|ref|XP_003809313.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Pan paniscus]
Length = 605
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 316/469 (67%), Gaps = 32/469 (6%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEAD---------------------------- 281
++ATPGR+IDHL N S L + VLILDEAD
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQPGAIS 180
Query: 282 ---RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + +
Sbjct: 181 CPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 240
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+
Sbjct: 241 APFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVG 300
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRV
Sbjct: 301 ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 360
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGR G +V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V
Sbjct: 361 GRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 420
Query: 519 AILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
A+LQ E EE+ ++++E + A+ ++ KE + P+R+WF T++E+K
Sbjct: 421 AVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERK 469
>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
Length = 561
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 304/425 (71%), Gaps = 1/425 (0%)
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++ P RVL+L
Sbjct: 1 MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVL 60
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI++ATPGR+IDHL
Sbjct: 61 VPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLH 120
Query: 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFSAT+T++V +L +
Sbjct: 121 NCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASV 180
Query: 323 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382
SL P+R+ + + L +E +RIR RE ++EA++ +L ++TFT V++F+ TK+
Sbjct: 181 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQ 240
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
AHR+ I GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TV
Sbjct: 241 AHRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV 300
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 502
IN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I K A + +K+RI+ +
Sbjct: 301 INFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV 360
Query: 503 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KEEIFARPKRTWFVT 561
I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++ KE + P+R+WF T
Sbjct: 361 ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQT 420
Query: 562 EKEKK 566
++E+K
Sbjct: 421 KEERK 425
>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
cuniculus]
Length = 789
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/442 (51%), Positives = 317/442 (71%), Gaps = 1/442 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LE
Sbjct: 213 SFQDMNLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 272
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+
Sbjct: 273 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 332
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ATPGR+IDHL N S L+ + VLILDEADR+L+ F ++ E++R+C RQT
Sbjct: 333 APDILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 392
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L
Sbjct: 393 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 452
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++TFT V++F+ TK+ AHRL IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+
Sbjct: 453 TRTFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDVLV 512
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TV+N+ P + YVHRVGRTARAGR G +V+ V + +R +LK I
Sbjct: 513 ATDVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 572
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K A + +K+RI+ + I ++ IE ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 573 VKAAKAPVKARILPQDVILRFRDKIEAMEKDVYAVLQLEAEEKAMQQSEAQINTAKRLLE 632
Query: 546 H-KEEIFARPKRTWFVTEKEKK 566
KE P+R+WF T++E+K
Sbjct: 633 KGKEAPGQEPERSWFQTKEERK 654
>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
Length = 1657
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/561 (45%), Positives = 366/561 (65%), Gaps = 26/561 (4%)
Query: 24 EDQGEEVDVE---KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRS--- 77
ED EE D E +P+K+ + DF + VS + + D +TK +++++
Sbjct: 989 EDFSEESDAEVEFQPTKQKNKRKVDFDTDFQFVSSAEEYNKDSWND--LTKYVKRKAKTK 1046
Query: 78 -----------VPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANS 126
P D+D S S+ + D K +++ A ++FF D + HA S
Sbjct: 1047 TDDKIKKVLVEAPHADSDVSLSDSELKHD-KIREKETRKKAAPNENFFETVDLDTEHA-S 1104
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A + + PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLER
Sbjct: 1105 FYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLER 1164
Query: 187 LLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LLYRP P + RVL+L PTREL VQV+ + +++AQF+DI+ L VGGL K QET LR
Sbjct: 1165 LLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRK 1224
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDIV+ATPGR+IDHL+++ + LD + VLILDEADR+L+ F+ ++ E+++ C + RQT
Sbjct: 1225 NPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQT 1284
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+TE+V+ L +SL KP+RL D + + L +E VRIR+ +E ++EA+L +L
Sbjct: 1285 MLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALV 1344
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TF ++F TK+ AHRL IL GL LK ELHGNLTQ QRL+AL+ F++ +D L+
Sbjct: 1345 CRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLV 1404
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GVQTVIN+ P + Y+HRVGRTARAGR G +V+ + +R ++K +
Sbjct: 1405 ATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDV 1464
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K+A +KSR++ + K+ +E++E Q+A ILQEE EER + K E + K E ++
Sbjct: 1465 VKKAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLLK 1524
Query: 546 HKEEIFARPKRTWFVTEKEKK 566
E+ ARP WF T+K++K
Sbjct: 1525 -GEKGEARP---WFQTKKQRK 1541
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/470 (49%), Positives = 324/470 (68%), Gaps = 7/470 (1%)
Query: 111 KSFFAPADGAS----FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K+FFAP + + A+SF ++LSRP++R ++G++KPTPIQA IP+AL G+D+
Sbjct: 239 KAFFAPEEENNPDKKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVV 298
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A TGSGKT AF LP LERLLYRPK+IP RV++L PTRELA+Q H++ K+A FTDI+
Sbjct: 299 GGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIK 358
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGLS K QE L+ PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 359 FTLAVGGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLED 418
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI + L +P R+ + K +TL +E
Sbjct: 419 GFAEELNEILTTLPKSRQTMLFSATMTSSVDRLISIGLNRPARVMVNSQKKTVTTLVQEF 478
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L +C + +VIIF K+ AHR +I+FGL L AELHG++ Q
Sbjct: 479 VRLRPGREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQ 538
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR
Sbjct: 539 TQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGR 598
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+G A+T ++DR ++KA K G+K+ SR + + + I++M+D++ I++E
Sbjct: 599 KGVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGEVDAFQTQIDEMDDEIDEIMEE 658
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
E+EE+ L EM+ K ENMI H+ EI RP+RTWF +E +KK + +A +
Sbjct: 659 EKEEKQLAHVEMQVKKGENMIQHEAEIKGRPRRTWFESEHDKKKSKQAGR 708
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/444 (48%), Positives = 314/444 (70%), Gaps = 3/444 (0%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++LSRP+LR ++G+++PTPIQ +P+A+ G+D+ G A TGSGKTAAF +P L
Sbjct: 275 GSFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPIL 334
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERLLYRPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG ST+ QE L+
Sbjct: 335 ERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLK 394
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PD+V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF ++++E++ PK RQ
Sbjct: 395 TRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQ 454
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +
Sbjct: 455 TMLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYI 514
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C K +T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++++E FR +L
Sbjct: 515 CEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYL 574
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K
Sbjct: 575 LATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQ 634
Query: 485 IAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
K + G+K+ SR V + +W K I+ +ED++ +L+EE+EER+L E + + E
Sbjct: 635 AVKASRDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGE 694
Query: 542 NMIAHKEEIFARPKRTWFVTEKEK 565
N+I H++EI +RP+RTWF +EK+K
Sbjct: 695 NLITHEDEIKSRPRRTWFESEKDK 718
>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
Length = 572
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/438 (50%), Positives = 313/438 (71%), Gaps = 1/438 (0%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR+IDHL N S L + VLILDEAD++L+ F ++ E++R+C RQTMLFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +TF
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTF 240
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
T V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDV
Sbjct: 241 TDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV 300
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
AARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A
Sbjct: 301 AARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA 360
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH-KE 548
+ +K+RI+ + I K+ IE++E V A+LQ E EE+ ++++E + A+ ++A KE
Sbjct: 361 KAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKE 420
Query: 549 EIFARPKRTWFVTEKEKK 566
P+R+WF T++E+K
Sbjct: 421 TADQEPERSWFQTKEERK 438
>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
Length = 691
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/570 (45%), Positives = 372/570 (65%), Gaps = 28/570 (4%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITK 71
D+EIE+ + E+ EV+ + P+K+ + DF + VS + + D +TK
Sbjct: 19 DDEIED----FSEESDAEVEFQ-PTKQKNKRKVDFDTDFQFVSSAEEYNKDSWND--LTK 71
Query: 72 SLQQRS--------------VPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPA 117
+++++ P D+D S S+ + D K +++ A ++FF
Sbjct: 72 YVKRKAKTKTDDKIKKVLVEAPHADSDVSLSDSELKHD-KIREKETRKKAAPNENFFETV 130
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D + HA SF ++NLSRPLL+A + + PTPIQA+ IP+AL GRDICG A TG+GKTA
Sbjct: 131 DLDTEHA-SFYQMNLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTA 189
Query: 178 AFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
A+ LPTLERLLYRP P + RVL+L PTREL VQV+ + +++AQF+DI+ L VGGL
Sbjct: 190 AYMLPTLERLLYRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDL 249
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
K QET LR PDIV+ATPGR+IDHL+++ + LD + VLILDEADR+L+ F+ ++ E++
Sbjct: 250 KAQETILRKNPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEII 309
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+ C + RQTMLFSAT+TE+V+ L +SL KP+RL D + + L +E VRIR+ +E +
Sbjct: 310 KQCARTRQTMLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGD 369
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+EA+L +L +TF ++F TK+ AHRL IL GL LK ELHGNLTQ QRL+AL+ F
Sbjct: 370 REAILAALVCRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKF 429
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
++ +D L+ATDVAARGLDI GVQTVIN+ P + Y+HRVGRTARAGR G +V+ +
Sbjct: 430 KETQIDVLVATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGE 489
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+R ++K + K+A +KSR++ + K+ +E++E Q+A ILQEE EER + K E +
Sbjct: 490 QERKIVKDVVKKAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQ 549
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
K E ++ E+ ARP WF T+K++K
Sbjct: 550 VNKVEKLLKG-EKGEARP---WFQTKKQRK 575
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/444 (48%), Positives = 314/444 (70%), Gaps = 3/444 (0%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++LSRP+LR ++G+++PTPIQ +P+A+ G+D+ G A TGSGKTAAF +P L
Sbjct: 275 GSFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPIL 334
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERLLYRPK++P RV I PTRELAVQ ++ K+A FTDI L+ GG ST+ QE L+
Sbjct: 335 ERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLK 394
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PD+V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE GF ++++E++ PK RQ
Sbjct: 395 TRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQ 454
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +
Sbjct: 455 TMLFSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYI 514
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C K +T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++++E FR +L
Sbjct: 515 CEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYL 574
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K
Sbjct: 575 LATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQ 634
Query: 485 IAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
K + G+K+ SR V + +W K I+ +ED++ +L+EE+EER+L E + + E
Sbjct: 635 AVKASRDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERDLKRGE 694
Query: 542 NMIAHKEEIFARPKRTWFVTEKEK 565
N+I H++EI +RP+RTWF +EK+K
Sbjct: 695 NLITHEDEIKSRPRRTWFESEKDK 718
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/470 (49%), Positives = 324/470 (68%), Gaps = 7/470 (1%)
Query: 111 KSFFAPADGAS----FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K+FFAP + + A+SF ++LSRP++R ++G++KPTPIQA IP+AL G+D+
Sbjct: 238 KAFFAPEEENNPDKKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVV 297
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A TGSGKT AF LP LERLLYRPK+IP RV++L PTRELA+Q H++ K+A FTDI+
Sbjct: 298 GGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIK 357
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGLS K QE L+ PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 358 FTLAVGGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLED 417
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF+ E++E++ PK RQTMLFSAT+T VD LI++ L +P R+ + K +TL +E
Sbjct: 418 GFADELNEILTTLPKSRQTMLFSATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEF 477
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
VR+R RE + L +C + +VIIF K+ AHR +I+FGL L AELHG++ Q
Sbjct: 478 VRLRPGREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQ 537
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QR+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ L YVHRVGRTARAGR
Sbjct: 538 TQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGR 597
Query: 467 EGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+G A+T ++DR ++KA K G+K+ SR + + I++M+D++ I++E
Sbjct: 598 KGVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGEVDALQTQIDEMDDEIDEIMEE 657
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
E+EE+ L EM+ K ENMI H+ EI RP+RTWF +E +KK + +A +
Sbjct: 658 EKEEKQLAHVEMQVKKGENMIQHEAEIKGRPRRTWFESEHDKKKSKQAGR 707
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/544 (43%), Positives = 346/544 (63%), Gaps = 58/544 (10%)
Query: 121 SFHAN--------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
SFH + SF ++NLSRP+L+A ALG+ +PTPIQ AC+P++L GRD+C A TG
Sbjct: 186 SFHEDASQFDDQLSFDDMNLSRPILKAITALGFKQPTPIQKACVPVSLLGRDLCACAATG 245
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
+GKTAAF LP LERL+Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VG
Sbjct: 246 TGKTAAFMLPVLERLIYKPRTSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLAVG 305
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL K QE ALR+ PD+++ATPGR+IDHL N+ + +L + +LILDEADR+L+ F ++
Sbjct: 306 GLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPNFELSHIEILILDEADRMLDEYFEEQM 365
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
E++RLC RQTMLFSAT+TE+V +L +SL +P+R+ + + L +E +RIR
Sbjct: 366 KEIIRLCSYNRQTMLFSATMTEEVKDLAAVSLKQPVRIFVNSNTDVAPFLRQEFIRIRPH 425
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
RE ++EAV+ +L ++TF V++F+ T++ AHRL IL GL LK ELHG L+Q QRLE
Sbjct: 426 REGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLEN 485
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+
Sbjct: 486 LRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSVS 545
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRK 532
V +++R +LK + K A + +K+R++ + K+ +I ++E V A+++ E+EER
Sbjct: 546 LVGESERRILKEVVKSAKNSVKARVLPPDVVLKFRDLICKLEKDVEAVMRLEKEER---- 601
Query: 533 AEMEATKAENMIAHK----EEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTS 588
E+ A++A+ +A K + +R WF T++E+K + V+
Sbjct: 602 -ELAASEAKLSVAQKRLDGSASSSESQRVWFQTQQERK----------------QSRVSK 644
Query: 589 AQQAEDLKIKEKRKRE------REKNLPRKER-------------------RKLEAAREM 623
A Q D ++ K+KR+ ++K L +ER RK + AR M
Sbjct: 645 ALQEFDFALRGKKKRDKFVKDAKKKELSSEERAQFEILKAQMFAERAAKRERKPKRARAM 704
Query: 624 LEDE 627
+EDE
Sbjct: 705 VEDE 708
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/443 (49%), Positives = 313/443 (70%), Gaps = 3/443 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++LSRP+LR ++G+++PTPIQ+ +P+A+ G+D+ G A TGSGKTAAF +P LE
Sbjct: 289 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 348
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYR K+IP RV I PTRELAVQ ++ K+A FTDI L+ GG S++ QE L++
Sbjct: 349 RLLYRQKKIPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKT 408
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR IDH+ N+ + +++L +L+LDEADR+LE GF ++++E++ PK RQT
Sbjct: 409 RPDVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQT 468
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C
Sbjct: 469 MLFSATMTSSVDKLIRIGMDKPVRLMVDAKKQTVKGLTQEFVRLRQGKEDKRLAYLMYIC 528
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K +T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+
Sbjct: 529 EKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLL 588
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K
Sbjct: 589 ATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQA 648
Query: 486 AKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K + G+K+ SR V + +W K I+ ME ++ +L+EE+EER + E + + EN
Sbjct: 649 VKASREQGAKVVSRQVPVEETERWMKKIKSMEKEIEEVLEEEKEERAMTVTERDLKRGEN 708
Query: 543 MIAHKEEIFARPKRTWFVTEKEK 565
+I H++EI ARP+RTWF TEKEK
Sbjct: 709 LIVHEDEIKARPRRTWFETEKEK 731
>gi|398407733|ref|XP_003855332.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
gi|339475216|gb|EGP90308.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
Length = 740
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/494 (45%), Positives = 332/494 (67%), Gaps = 8/494 (1%)
Query: 76 RSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRP 135
+ VP D+ ++S + ED ++ + A D++S A+ A +F +NLSRP
Sbjct: 182 KHVPHPDDVAAESGSENGEDAVETEKRNAFFANDSES-----KNAAPGATAFSTMNLSRP 236
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
+L+ A+G++ PTPIQA IP+AL G+D+ G A+TGSGKT AF +P LERLL+RPKR
Sbjct: 237 ILKGLAAVGFNTPTPIQAKTIPVALEGKDLVGGAVTGSGKTGAFLIPILERLLFRPKRTA 296
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV+IL PTRELA+Q ++ +K+A FTDI +GGL+++ QE L+ PDIV+ATPG
Sbjct: 297 TTRVVILMPTRELALQCFAVAKKLASFTDITFGQAIGGLNSREQEKQLKLRPDIVIATPG 356
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R ID RNS S + + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 357 RFIDLERNSASFTVSTVEILVLDEADRMLEEGFADELNEILNKIPKSRQTMLFSATMTSK 416
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD+LI++ L +P+RL D + S L +E VR+R RE + A L++L +T +VII
Sbjct: 417 VDDLIRVGLQRPVRLLVDAQRQTVSGLVQEFVRLRPGRESKRLAYLMNLAESVYTDRVII 476
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR++++F L L AAELHG+++Q QR+ A+E FR ++L+ATD+A+RGLD
Sbjct: 477 FFRQKKEAHRVRVIFALCGLNAAELHGSMSQEQRINAIESFRTGKANYLLATDLASRGLD 536
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I G++TVINY P+ Y+HRVGRTARAGR G + T + DR ++KA K G+
Sbjct: 537 IKGIETVINYEAPQSHEIYLHRVGRTARAGRTGRSCTLAAEPDRKVVKAAVKSGKAQGAV 596
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+K R + + W +E +E +V +L+EE+EE+ L++ + + TKA+N++ ++ EI A
Sbjct: 597 IKQRTIDPSDVDAWQTRLEALESEVEDVLREEKEEKALQQVDRDLTKADNIVKYEAEIKA 656
Query: 553 RPKRTWFVTEKEKK 566
RP++TWF +EK+K+
Sbjct: 657 RPRKTWFESEKDKQ 670
>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
Length = 782
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/473 (48%), Positives = 320/473 (67%), Gaps = 13/473 (2%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+
Sbjct: 152 ANDQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAY 211
Query: 180 ALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
LPTLERLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K
Sbjct: 212 MLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKA 271
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++
Sbjct: 272 QEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINS 331
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
C K RQTMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E
Sbjct: 332 CCKTRQTMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+L SL +TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F++
Sbjct: 392 PILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +
Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
R ++K I K A S +K+RI+ + I K+ + +E ++ IL+EE+ ER L K E + +
Sbjct: 512 RKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILEEEQAERQLAKTEQQLS 571
Query: 539 KAENMIAHKEEIFARPKRTWFVTEKEK-----KLAVKA---DKASIEKGKGSG 583
K E + + + +R WF T+K++ +LA+ +K + KGKG G
Sbjct: 572 KTERKLLGQ----SNERRGWFQTKKQREDEKARLALTPADEEKPAGPKGKGKG 620
>gi|302417364|ref|XP_003006513.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
gi|261354115|gb|EEY16543.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
Length = 757
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/529 (45%), Positives = 335/529 (63%), Gaps = 31/529 (5%)
Query: 82 DNDHSDSEFDQHEDYKPE--DEDDFSNAGDTKSFFAPAD----GASFHANSFMELNLSRP 135
DND + D +D + + D++D +FFAP + G ANSF
Sbjct: 201 DNDSIATPVDHPDDVESDLSDDEDPEEKAKRDAFFAPEEVAKPGKKAAANSF-------- 252
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
P IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct: 253 --------------PGHQKTIPIALMGKDLVGGAVTGSGKTAAFVVPILERLLYRPKKVP 298
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
RV+ILTPTRELA+Q HS+ K+A +TDI+ L VGGLS KMQE LR PD+++ATPG
Sbjct: 299 TSRVVILTPTRELAIQCHSVATKLAAYTDIKFTLAVGGLSLKMQEAELRLRPDVIIATPG 358
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R IDH+RNS S +D + +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T
Sbjct: 359 RFIDHMRNSASFAVDAVEILVLDEADRMLEDGFADELNEILTSMPKSRQTMLFSATMTSS 418
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
VD LI++ + P R+ D K +TLT+E +R+R RE + LL +C +T +VII
Sbjct: 419 VDRLIRVGMNTPARVMVDSQKKTVTTLTQEFIRLRPGRESKRMGYLLFICKTLYTERVII 478
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F K+ AHR +I+FGL L AELHG++ Q QR++++E FR V +L+ATD+A+RGLD
Sbjct: 479 FFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVSYLLATDLASRGLD 538
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSK 492
I G+ TVINY P+ L YVHRVGRTARAGR G AVT + DR ++KA K G+K
Sbjct: 539 IKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVVKAAVKAGKAQGAK 598
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
+ SR++ KW +++ME+++ I +EE+EER L + EM+ K EN+I H++EI +
Sbjct: 599 ILSRVIEAGEADKWQDKVDEMEEEIEEINEEEKEERQLAQVEMQVRKGENLINHEDEIKS 658
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
RP+RTWF +EK+KK A +A +A + K + +D K E R
Sbjct: 659 RPRRTWFESEKDKKSAKEAGRAELNGDKNEKKKGGGKMSNKDKKKAESR 707
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 314/463 (67%), Gaps = 10/463 (2%)
Query: 113 FFAPADGASFHA-------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
FFAP + + SF ++LSRP+LR A+G+S+PTPIQ IP+A+ G+D+
Sbjct: 261 FFAPEESVTKKKKSAKASTGSFQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDV 320
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A TGSGKTAAF +P LERLLYRPK++P RV I PTRELAVQ ++ K+A FTDI
Sbjct: 321 VGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDI 380
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
L+ GG STK QE L++ PD+V+ATPGR IDH+ N+ + ++ L +L+LDEADR+LE
Sbjct: 381 TFALMAGGFSTKDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLE 440
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF ++++E++ PK RQTMLFSAT+T VD LI++ + KP+RL D LT+E
Sbjct: 441 EGFESQLNEILTTIPKSRQTMLFSATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQE 500
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
+R+R+ +E + A L+ +C K + +VIIF K+ AHR++++F L LKA+ELHGN++
Sbjct: 501 FIRLRQGKEDRRLAYLMYICEKFYNERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMS 560
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QR++A+E FR +L+ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAG
Sbjct: 561 QEQRIQAVEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAG 620
Query: 466 REGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
REG A T + DR ++K K A G+K+ R V + +W + +E+++ +LQ
Sbjct: 621 REGRACTLAAEPDRKVVKQAVKAARDQGAKVVQRQVPVEETDRWMTKLRGLEEEIEEVLQ 680
Query: 523 EEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
EE++ER+L E + + EN+I H++EI ARP+R WF +EKEK
Sbjct: 681 EEKDERLLSITERDLKRGENLILHEDEIKARPRRVWFESEKEK 723
>gi|452823641|gb|EME30650.1| ATP-dependent RNA helicase DEAD [Galdieria sulphuraria]
Length = 558
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/438 (49%), Positives = 305/438 (69%), Gaps = 3/438 (0%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
++F++L +SRPLL A LG+ PTPIQ IPLAL GRDIC SA+TGSGKT AFA+P L
Sbjct: 99 STFLQLGISRPLLVAIRQLGWEVPTPIQDKVIPLALVGRDICASAVTGSGKTGAFAVPIL 158
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
E+L ++ +RV+++ PTRELA+Q + ++++ DI L +GGL+ + ++ AL+
Sbjct: 159 EKLWRSASKVSLVRVIVILPTRELALQCKQVFTELSKNMDIDIELAIGGLAVRAEQDALQ 218
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ TPGR+IDH+RN+ +DD+ +++LDEADRLL+LGFS E+ E++R C +RQ
Sbjct: 219 RCPDIVIGTPGRIIDHIRNTKGFSVDDVEIVVLDEADRLLDLGFSEELEEIIRSCSPKRQ 278
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLS 363
T+LFSAT+T V +L LSL +P + DP + TL +E V I VN+ + LL+
Sbjct: 279 TLLFSATMTTSVQQLALLSLKEPANIVVDPLYEVSKTLEQEFVLISDGNNVNKRISYLLA 338
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
LC +T+T +VI+F + AH++ I+FG+ L A ELHGNL+Q QR+EAL FRK +F
Sbjct: 339 LCCRTYTQRVILFFSKRSVAHQIFIIFGMLGLSAVELHGNLSQMQRMEALNRFRKGQCEF 398
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL 481
L+ TDVA+RGLDI V+TVINY P D+ +YVHRVGRTARAG +G AVT V T + R L
Sbjct: 399 LLCTDVASRGLDIFDVRTVINYEMPNDIRTYVHRVGRTARAGAKGKAVTLVDETSHARRL 458
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
L I KR+ + LKSR + + + K+ +I+ + Q+ LQ+ER E+ + AEMEA KA+
Sbjct: 459 LSVIQKRSKTTLKSRSITDSVLDKYLEILFSKQGQIKEQLQKERHEKEIEMAEMEAKKAQ 518
Query: 542 NMIAHKEEIFARPKRTWF 559
N+I H +EI+ARPKRTWF
Sbjct: 519 NLIDHADEIYARPKRTWF 536
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/443 (49%), Positives = 313/443 (70%), Gaps = 3/443 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++LSRP+LR ++G+++PTPIQ+ +P+A+ G+D+ G A TGSGKTAAF +P LE
Sbjct: 290 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 349
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYR K+IP RV I PTRELAVQ ++ K+A FTDI L+ GG S++ QE L++
Sbjct: 350 RLLYRQKKIPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKT 409
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR IDH+ N+ + +++L +L+LDEADR+LE GF ++++E++ PK RQT
Sbjct: 410 RPDVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQT 469
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T VD+LI++ + KP+RL D + LT+E VR+R+ +E + A L+ +C
Sbjct: 470 MLFSATMTSSVDKLIRIGMDKPVRLMVDSKKQTVKGLTQEFVRLRQGKEDKRLAYLMYIC 529
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K +T KVI+F K+ AHR++++F L LKA+ELHGN++Q QR++A+E FR +L+
Sbjct: 530 EKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLL 589
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V TVINY P+ Y+HRVGRTARAGR G A T + DR ++K
Sbjct: 590 ATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQA 649
Query: 486 AKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K + G+K+ SR V + KW K I+ +E ++ +L+EE+EER + E + + EN
Sbjct: 650 VKASREQGAKVVSRQVPAEETEKWMKKIKSLEKEIEEVLEEEKEERAMTVTERDLKRGEN 709
Query: 543 MIAHKEEIFARPKRTWFVTEKEK 565
+I H++EI ARP+RTWF TEKEK
Sbjct: 710 LIVHEDEIKARPRRTWFETEKEK 732
>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|74695973|sp|Q75F95.1|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|374105576|gb|AEY94487.1| FAAL164Cp [Ashbya gossypii FDAG1]
Length = 734
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/529 (45%), Positives = 349/529 (65%), Gaps = 36/529 (6%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----SFMELNLSRPLLRACEALGYS 146
D+ E+ + ED A + F+AP++ N +F L+LSRP+L+ ALGY+
Sbjct: 186 DEQEEAREED-----TAEEMAQFYAPSNEGEEAKNVVHSTFNSLSLSRPVLKGLAALGYT 240
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206
KP+PIQ A IP+AL G+D+ A+TGSGKTAAF +P +ERLLY+P +I + RVL+LTPTR
Sbjct: 241 KPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTR 300
Query: 207 ELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
ELA+QV + +K+ +F + + L VGGL+ + QE AL+ PDIV+ATPGR+IDH+RNS
Sbjct: 301 ELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSA 360
Query: 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
S +D + VL++DEADR+LE GF E++E++ L P +RQT+LFSAT+ + +LI LSL
Sbjct: 361 SFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQTLLFSATMNSRIKQLISLSLK 420
Query: 326 KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQA 382
KP+R+ DP + + LT+E VR+R+ RE + A+L L K T ++++F K+
Sbjct: 421 KPVRIMIDPPKQAANKLTQEFVRLRK-REHLKPALLYHLLRKLDSTGQKRIVVFVARKEV 479
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
AHRL+++ GL +KA ELHG+LTQ QRL+++ F+ V L+ TD+A+RGLDI ++ V
Sbjct: 480 AHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVV 539
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLK-AIAKRAGSKLK----S 495
INY P+ Y+HRVGRTARAGREG +VT V ++ +RS++K AI GSK
Sbjct: 540 INYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERSIVKDAIKSVDGSKGSGRACG 599
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R+V + + + K+++ ED + IL+EE++E+ + +AEME K ENM+ KEEI ARP+
Sbjct: 600 RVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEKEILRAEMEIRKGENMLKFKEEINARPR 659
Query: 556 RTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRE 604
RTWF +E EKK +SI + +VT+++ KRKRE
Sbjct: 660 RTWFQSESEKK------NSSILQALSKNKKVTNSK---------KRKRE 693
>gi|449296384|gb|EMC92404.1| hypothetical protein BAUCODRAFT_27693 [Baudoinia compniacensis UAMH
10762]
Length = 699
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 320/463 (69%), Gaps = 4/463 (0%)
Query: 112 SFFAP-ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
+FFAP + SF ++LSRP+++ ++G+S TPIQ IP+AL G+DI G A+
Sbjct: 179 AFFAPETTSKPENETSFGAMSLSRPIMKGLASVGFSAATPIQRKAIPVALEGKDIVGGAV 238
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TGSGKTAAF +P LERLLYRPKR+ RV IL PTRELA+Q ++ +K+A FTDI
Sbjct: 239 TGSGKTAAFMIPILERLLYRPKRVATTRVAILMPTRELALQCLAVAKKLAAFTDITFGRA 298
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
+GGL+ + QE L+ PDIV+ATPGR ID +RN + D + +L+LDEADR+LE GFS
Sbjct: 299 IGGLNLREQEKELKLRPDIVIATPGRFIDFMRNYNAFQTDKIEILVLDEADRMLEEGFSD 358
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
E++E+++ PK RQTMLFSAT+T VD+LI++ + +P+R+ D S L +E +R+R
Sbjct: 359 ELNEILKTIPKSRQTMLFSATMTSRVDDLIRVGMQRPVRIMVDAQKASASGLVQEFIRLR 418
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE + L+ LC++ +VIIF K+ AHR++++F L LKAAELHG+++Q QR+
Sbjct: 419 PGREEKRLGYLMHLCTQVHRDRVIIFFRQKKEAHRVRVIFALCDLKAAELHGSMSQEQRI 478
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
A+E FR FL+ATD+A+RGLDI G++TVINY P+ Y+HRVGRTARAGR+G A
Sbjct: 479 NAIERFRSGRASFLLATDLASRGLDIKGIETVINYEAPQTHEIYLHRVGRTARAGRKGIA 538
Query: 471 VTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
T + DR ++KA K A G++++ R V ++ W K + + D++ +L+EE+EE
Sbjct: 539 CTLAAEPDRKIVKAAVKAAKAHGAQVRQRTVDKEDADAWQKRCDDLHDEIEDVLREEKEE 598
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
R++++ E + T+AEN++ +++EI ARPK+TWF +EKEK A K
Sbjct: 599 RVMQQTERDITRAENVVKYEDEIKARPKKTWFESEKEKVAAKK 641
>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
Length = 782
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 356/588 (60%), Gaps = 43/588 (7%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAK-----QSPWDFAA----YSESVSDEHF---- 58
D E+E L ED EV+ + R K + ++F + Y++ D+
Sbjct: 16 DAEVENLS----EDSDAEVEYQPTKLRHKKVTEFEKGFEFVSSVKEYNQDTWDDLMKYVK 71
Query: 59 RRRTTSVDFKITKSLQQRS-VPIVDNDHSD-SEFDQHEDYKPEDE--------------- 101
R+ T D KI LQ+R V + SD SE D ED D
Sbjct: 72 RKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKK 131
Query: 102 --DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
++ K FA A+ SF ++NLSRPL+RA LGY+ PTPIQA+ IP+A
Sbjct: 132 AGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVA 191
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEK 218
L GRDICG A TG+GKTAA+ LPTLERLLYRP AI RVL+L PTREL QV+ + ++
Sbjct: 192 LLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQ 251
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ QFT I L +GGL K QE LR PDIV+ATPGR+IDH++N+ S LD + VLILD
Sbjct: 252 LCQFTSIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILD 311
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADR+L+ F+ ++ E++ C K RQTMLFSAT++E V +L +SL KP+++ + + +
Sbjct: 312 EADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV 371
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR +E ++E +L SL +TF ++F TK+ AHRL IL GL ++A
Sbjct: 372 AFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAG 431
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRLE+L+ F+++ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRV
Sbjct: 432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGR G +V+ + +R ++K I K A S +K+RI+ + I K+ + +E ++
Sbjct: 492 GRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQ 551
Query: 519 AILQEEREERILRKAEMEATKAE-NMIAHKEEIFARPKRTWFVTEKEK 565
IL EE+ ER L K E + +K E ++ E +R WF T++++
Sbjct: 552 NILDEEQAERQLAKTEQQLSKTERKLLGQTNE-----RRGWFQTKQQR 594
>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
Length = 879
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/461 (48%), Positives = 320/461 (69%), Gaps = 8/461 (1%)
Query: 111 KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
K +F A+G + H SF +++LSRPL++A ALGY PTPIQA+ IP+AL GRDICG A
Sbjct: 194 KDYFEEAEGTNEHIQSFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAA 253
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
TG+GKTAA+ LPTLERLLY+P A+ RVL+L PTREL QV+ + +++ QFT++ +
Sbjct: 254 TGTGKTAAYMLPTLERLLYKPNAAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVEVGI 313
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
+GGL K QE LR+ PDIV+ATPGR+IDH++N+ S LD + +LILDEADR+L+ F+
Sbjct: 314 AIGGLDVKAQEAVLRTNPDIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFA 373
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
++ E++R C RQTMLFSAT+TE+V +L +SL KP+++ + + L +E +R+
Sbjct: 374 EQMKEIIRSCSATRQTMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRV 433
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
R RE ++E +L +L +TF ++F TK+ AHRL+IL GL +KA ELHG+LTQAQR
Sbjct: 434 REGREADREPILAALVCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQAQR 493
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
LE+L+ F+ + +D L+ATDVAARGLDI GV TVIN+ P L Y+HRVGRTARAGR G
Sbjct: 494 LESLKQFKDEQIDVLVATDVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGRAGV 553
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
+V+ + +R ++K I K A + +K+RI+ + I K+ + +E ++ +L EER E++
Sbjct: 554 SVSLAGELERRIVKDIVKNAVNPVKNRIIPGEIIDKYRAKVAALESEIDKVLAEERAEKM 613
Query: 530 LRKAEMEATKAE----NMIAHKEEIFARPKRTWFVTEKEKK 566
LR+AE + T E + HK + P R WF +++EK+
Sbjct: 614 LRQAEQQLTSTERKLKGIAPHKTD---GPPREWFQSQREKR 651
>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
Length = 787
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/443 (50%), Positives = 308/443 (69%), Gaps = 9/443 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+E
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVE 217
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QET LR
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLR 277
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D L
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 518 IIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE--- 574
Query: 545 AHKEEIFARP--KRTWFVTEKEK 565
++ +P +RTWF T++++
Sbjct: 575 ---RKLLGQPNERRTWFQTKQQR 594
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/467 (51%), Positives = 310/467 (66%), Gaps = 29/467 (6%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L+LSRPLLR A+G+ KPTPIQAA IPLAL GRDIC SA+TGSGKTAAF LP LER
Sbjct: 1 FNQLSLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILER 60
Query: 187 LLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETALR 244
LL+R R AI ILTPTRELA Q M+ AQFT++R L+VGG + Q LR
Sbjct: 61 LLHRYSGRTKAI---ILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELR 117
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S PD++VATPGR++DH+ NS V L+D+ +L+LDEADRLL+LGF E+HELV+ CP +RQ
Sbjct: 118 SRPDVIVATPGRLLDHITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQ 177
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST-----LTEEVVRIRRMRE-VNQE 358
T+LFSAT+ VD+LI+LS+ +P+R+ A L +E VR+R E N+E
Sbjct: 178 TLLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGANRE 237
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+LL+L ++TF + I+F TK AAHRL IL GL +K AELHGNL+Q QRL ALE FRK
Sbjct: 238 GMLLALLTRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFRK 297
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VD L+ATD+AARGLDI V+TVIN+ P + +YVHR+GRTARAGR G + T + +
Sbjct: 298 GDVDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGR 357
Query: 479 RSLLKAIAKRAGSK------------------LKSRIVAEQSITKWSKIIEQMEDQVAAI 520
R L+K + K A K ++SR + + + I+ +E V +
Sbjct: 358 RHLMKELIKDAEVKNKRHTTGDTAKSSFESGVIRSRTIPPAVMGHFVAKIQSLETHVDEV 417
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
Q E ++ R AEME KA+N+I H +EI ARP+R WF +EK+KKL
Sbjct: 418 FQAEAIAKMDRLAEMEVIKAQNIIQHSDEIKARPQREWFASEKQKKL 464
>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
Length = 784
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/443 (50%), Positives = 308/443 (69%), Gaps = 9/443 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+E
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVE 217
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QET LR
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLR 277
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D L
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 518 IIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE--- 574
Query: 545 AHKEEIFARP--KRTWFVTEKEK 565
++ +P +RTWF T++++
Sbjct: 575 ---RKLLGQPNERRTWFQTKQQR 594
>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
Length = 782
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 356/588 (60%), Gaps = 43/588 (7%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAK-----QSPWDFAA----YSESVSDEHF---- 58
D E+E L ED EV+ + R K + ++F + Y++ D+
Sbjct: 16 DAEVENLS----EDSDAEVEYQPTKLRHKKVTEFEKGFEFVSSVKEYNQDTWDDLMKYVK 71
Query: 59 RRRTTSVDFKITKSLQQRS-VPIVDNDHSD-SEFDQHEDYKPEDE--------------- 101
R+ T D KI LQ+R V + SD SE D ED D
Sbjct: 72 RKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKK 131
Query: 102 --DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
++ K FA A+ SF ++NLSRPL+RA LGY+ PTPIQA+ IP+A
Sbjct: 132 AGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYTYPTPIQASTIPVA 191
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEK 218
L GRDICG A TG+GKTAA+ LPTLERLLYRP AI RVL+L PTREL QV+ + ++
Sbjct: 192 LLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQ 251
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ QFT I L +GGL K QE LR PDIV+ATPGR+IDH++N+ S LD + VLILD
Sbjct: 252 LCQFTSIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILD 311
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADR+L+ F+ ++ E++ C K RQTMLFSAT++E V +L +SL KP+++ + + +
Sbjct: 312 EADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV 371
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR +E ++E +L SL +TF ++F TK+ AHRL IL GL ++A
Sbjct: 372 AFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAG 431
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRLE+L+ F+++ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRV
Sbjct: 432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGR G +V+ + +R ++K I K A S +K+RI+ + I K+ + +E ++
Sbjct: 492 GRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQ 551
Query: 519 AILQEEREERILRKAEMEATKAE-NMIAHKEEIFARPKRTWFVTEKEK 565
IL EE+ ER L K E + +K E ++ E +R WF T++++
Sbjct: 552 NILDEEQAERQLAKTEQQLSKTERKLLGQTNE-----RRGWFQTKQQR 594
>gi|453086868|gb|EMF14909.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 725
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/510 (47%), Positives = 331/510 (64%), Gaps = 21/510 (4%)
Query: 113 FFAPADGASF-HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
FFA + +S A +F +NLSRP+LR A+G+ KPTPIQA IP+AL GRD+ G A T
Sbjct: 221 FFANDEKSSNPAATAFHAMNLSRPILRGLAAVGFDKPTPIQAKSIPVALEGRDLVGGAET 280
Query: 172 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
GSGKT AF +P LERL++RPKR RV+IL PTRELA+Q ++ +K+A TDI +
Sbjct: 281 GSGKTGAFIIPILERLMFRPKRTATTRVVILMPTRELALQCFNVAKKLAAHTDITFGQAI 340
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGL+ + QE AL+ PDIV+ATPGR ID RNS D+ + +L+LDEADR+LE GF+ E
Sbjct: 341 GGLNLREQEKALKLRPDIVIATPGRFIDLERNSTGFDVSTVEILVLDEADRMLEEGFADE 400
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
++E++ PK RQTMLFSAT+T VD+LI+ L +P+RL D + L +E VR+R
Sbjct: 401 LNEILTKIPKSRQTMLFSATMTTKVDDLIRSGLQRPVRLMVDSQQQTVKGLVQEFVRLRP 460
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
RE + A L+ LC K +T +VIIF K+ AHR++++F LA LKAAELHG L+Q QR+
Sbjct: 461 GREKKRLAYLMYLCEKVYTDRVIIFFRQKKEAHRVRVIFALAGLKAAELHGTLSQEQRIN 520
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
A+E FR FL+ATD+A+RGLDI G++TVINY P+ Y+HRVGRTARAGR G A
Sbjct: 521 AIESFRTGKAGFLLATDLASRGLDIKGIETVINYEAPQSHEIYLHRVGRTARAGRTGRAC 580
Query: 472 TFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
T + DR ++KA K G+ +K R + W IE M D + +L+EE+EE+
Sbjct: 581 TLAAEPDRKVVKAAVKAGKAQGAVIKQRTIEAHDADAWHARIEAMADDIEEVLREEKEEK 640
Query: 529 ILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTS 588
L + + TKA+NM+ +++EI +RPK+TWF +EK+K+ A K G + +
Sbjct: 641 ALNIVDKQLTKADNMVKYEDEIKSRPKKTWFESEKDKQAA-----------KDRGRALLN 689
Query: 589 AQQAEDLKIKEKRKREREKNLPRKERRKLE 618
+A + K K+ K L K+R+KL+
Sbjct: 690 GAEAMETKKKKGGK------LSNKDRKKLQ 713
>gi|392884823|ref|NP_490891.2| Protein Y71G12B.8 [Caenorhabditis elegans]
gi|373219451|emb|CCD67990.1| Protein Y71G12B.8 [Caenorhabditis elegans]
Length = 739
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/525 (43%), Positives = 331/525 (63%), Gaps = 40/525 (7%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
E+ED FS D KS + SF ++NLSR +L+AC GYS PTPIQ ACIP+
Sbjct: 128 ENEDFFSALIDGKSLDTSVN------VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPV 181
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
ALTG+DIC A TG+GKTAAF LP LER++YRPK RVL+L PTRELA+QV + K
Sbjct: 182 ALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRK 241
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
++ F + CL GGL K QE ALRS PD+VVATPGR+IDHL NS S +L ++ VL+LD
Sbjct: 242 LSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLD 301
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADR+LE F +++EL+RLC + RQT+LFSAT+TE++DEL +SL KP+++ + +
Sbjct: 302 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 361
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR RE ++EA++ +L ++TF + I+F TK+ R++IL GL +K
Sbjct: 362 ALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVG 421
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
++ +LTQ QR+E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+HRV
Sbjct: 422 QMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRV 481
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
GRTARAG+ G +++ V +++R LLK I A LK R+VA + + + + I+++E+ +
Sbjct: 482 GRTARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETI 541
Query: 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFA-RPKRTWFVTEKEKKLAVKADKASI 576
I +E+R E+ LR AE K +N + E A +R W + E +
Sbjct: 542 QQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQ------------ 589
Query: 577 EKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAR 621
I+++RKRE ++ + R+K EAA+
Sbjct: 590 --------------------IEKQRKREEKRQMKVDARKKAEAAK 614
>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
Length = 790
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/443 (49%), Positives = 307/443 (69%), Gaps = 9/443 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPT+E
Sbjct: 159 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVE 218
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR
Sbjct: 219 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 278
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQ
Sbjct: 279 QNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 338
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL
Sbjct: 339 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 398
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D L
Sbjct: 399 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 458
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 459 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 518
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +K E
Sbjct: 519 IIKNAESSVKNRIIPPEIIDKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTE--- 575
Query: 545 AHKEEIFARP--KRTWFVTEKEK 565
++ +P +RTWF T++++
Sbjct: 576 ---RKLLGQPNERRTWFQTKQQR 595
>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
Length = 782
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 355/588 (60%), Gaps = 43/588 (7%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAK-----QSPWDFAA----YSESVSDEHF---- 58
D E+E L ED EV+ + R K + ++F + Y++ D+
Sbjct: 16 DAEVENLS----EDSDAEVEYQPTKLRHKKVTEFEKGFEFVSSVKEYNQDTWDDLMKYVK 71
Query: 59 RRRTTSVDFKITKSLQQRS-VPIVDNDHSD-SEFDQHEDYKPEDE--------------- 101
R+ T D KI LQ+R V + SD SE D ED D
Sbjct: 72 RKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKK 131
Query: 102 --DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
++ K FA A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+A
Sbjct: 132 AGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVA 191
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEK 218
L GRDICG A TG+GKTAA+ LPTLERLLYRP AI RVL+L PTREL QV+ + ++
Sbjct: 192 LLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQ 251
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ QFT I L +GGL K QE LR PDIV+ATPGR+IDH++N+ S LD + VLILD
Sbjct: 252 LCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILD 311
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADR+L+ F+ ++ E++ C K RQTMLFSAT++E V +L +SL KP+++ + + +
Sbjct: 312 EADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV 371
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR +E ++E +L SL +TF ++F TK+ AHRL IL GL ++A
Sbjct: 372 AFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAG 431
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRLE+L+ F+++ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRV
Sbjct: 432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGR G +V+ + +R ++K I K A S +K+RI+ + I K+ + +E ++
Sbjct: 492 GRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQ 551
Query: 519 AILQEEREERILRKAEMEATKAE-NMIAHKEEIFARPKRTWFVTEKEK 565
IL EE+ ER L K E + +K E ++ E +R WF T++++
Sbjct: 552 NILDEEQAERQLAKTEQQLSKTERKLLGQTNE-----RRGWFQTKQQR 594
>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
Length = 792
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/447 (49%), Positives = 308/447 (68%), Gaps = 4/447 (0%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+
Sbjct: 154 ANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAY 213
Query: 180 ALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
LPTLERLLYRP I RVL+L PTREL QV+ + +++ QFT I L +GGL K
Sbjct: 214 MLPTLERLLYRPLNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKA 273
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++
Sbjct: 274 QEAVLRQNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINS 333
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
C K RQTMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E
Sbjct: 334 CCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 393
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+L SL +TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F++
Sbjct: 394 PILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKE 453
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +
Sbjct: 454 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 513
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
R ++K I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER + K E + +
Sbjct: 514 RKIVKDIIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILDEEQAERQIAKTEQQLS 573
Query: 539 KAENMIAHKEEIFARPKRTWFVTEKEK 565
K E + ++ + +RTWF T++++
Sbjct: 574 KTERKLLGQQ---GQDRRTWFQTKQQR 597
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/475 (47%), Positives = 326/475 (68%), Gaps = 20/475 (4%)
Query: 113 FFAPA----DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+APA D +F L+LSRP+L+ LGY+KP+PIQ+A IP+AL+G+DI
Sbjct: 210 FYAPASEGDDAKKQTYANFNSLSLSRPVLKGLATLGYTKPSPIQSATIPVALSGKDIIAG 269
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRC 227
A+TGSGKTAAF +P +ERLL++ +I A RV++LTPTRELA+Q+ + +KI +F + I
Sbjct: 270 AVTGSGKTAAFMIPVIERLLFKSAKIAATRVIVLTPTRELAIQISDVGKKIGKFINGITF 329
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L++ PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 330 GLAVGGLNLRQQEQELKARPDIVIATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEEG 389
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E+++L P +RQT+LFSAT+ + +L+ LSL KP+R+ DP + S LT+E V
Sbjct: 390 FQEELNEIMQLLPNKRQTLLFSATMNSKIKQLVSLSLRKPVRIMIDPPKQAASRLTQEFV 449
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RI R R+ + A+L +L K ++++F K+ AHRL+I+ GL + AELHG+L
Sbjct: 450 RI-RARDHLKPALLFNLIKKLDGYGQKRMVVFVSRKEMAHRLRIILGLLGMNVAELHGSL 508
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q QRLE++ F+ + LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 509 SQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 568
Query: 465 GREGYAVTFV--TDNDRSLLK-AIA--------KRAGSKLKSRIVAEQSITKWSKIIEQM 513
GREG +V+FV T N+RS+++ AI K GS+ R V + + +K++E+M
Sbjct: 569 GREGRSVSFVGETSNERSIVRDAIKSVEEVSKIKSDGSRALGRQVNWNQVEETNKLVEKM 628
Query: 514 EDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
D + +L EE++E+ + +AEM+ K ENM+ HK+EI +RP+RTWF TE EKK A
Sbjct: 629 SDTIEDVLVEEKQEKEILRAEMQLKKGENMLKHKQEIQSRPRRTWFQTEAEKKNA 683
>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
Length = 641
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 254/588 (43%), Positives = 355/588 (60%), Gaps = 41/588 (6%)
Query: 12 DEEIEELQSEYEEDQGEEVDVEKPSKRAK-----QSPWDFAA----YSESVSDEHF---- 58
D E+E L ED EV+ + R K + ++F + Y++ D+
Sbjct: 16 DAEVENLS----EDSDAEVEYQPTKLRHKKVTEFEKGFEFVSSVKEYNQDTWDDLMKYVK 71
Query: 59 RRRTTSVDFKITKSLQQRS-VPIVDNDHSD-SEFDQHEDYKPEDE--------------- 101
R+ T D KI LQ+R V + SD SE D ED D
Sbjct: 72 RKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKK 131
Query: 102 --DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
++ K FA A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+A
Sbjct: 132 AGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVA 191
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEK 218
L GRDICG A TG+GKTAA+ LPTLERLLYRP AI RVL+L PTREL QV+ + ++
Sbjct: 192 LLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQ 251
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ QFT I L +GGL K QE LR PDIV+ATPGR+IDH++N+ S LD + VLILD
Sbjct: 252 LCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILD 311
Query: 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
EADR+L+ F+ ++ E++ C K RQTMLFSAT++E V +L +SL KP+++ + + +
Sbjct: 312 EADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV 371
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
L +E +RIR +E ++E +L SL +TF ++F TK+ AHRL IL GL ++A
Sbjct: 372 AFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAG 431
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHGNLTQ QRLE+L+ F+++ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRV
Sbjct: 432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
GRTARAGR G +V+ + +R ++K I K A S +K+RI+ + I K+ + +E ++
Sbjct: 492 GRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQ 551
Query: 519 AILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
IL EE+ ER L K E + +K E + + +R WF T+++++
Sbjct: 552 NILDEEQAERQLAKTEQQLSKTERKLLGQ----TNERRGWFQTKQQRE 595
>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans CBS 6340]
Length = 739
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/457 (48%), Positives = 319/457 (69%), Gaps = 13/457 (2%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
+ H N F L+LSRP+L+ AL Y KP+PIQ+A IP+AL G+DI A+TGSGKTAA+
Sbjct: 220 TVHTN-FNSLSLSRPVLKGLGALNYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYM 278
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQ 239
+P +ERLLY+P +I + RV++LTPTRELA+QV + K+A+F + I L VGGL+ + Q
Sbjct: 279 IPIIERLLYKPAQIASTRVIVLTPTRELAIQVSDVGAKLAKFVNGISFGLAVGGLNLRQQ 338
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E LRS PDIV+ATPGR+IDH+RNS S ++D + +L++DEADR+LE GF E++E++ L
Sbjct: 339 EQTLRSRPDIVIATPGRLIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLI 398
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQT+LFSAT+ +++LI LSL KP+++ DP + + LT+E VR+R+ E+ + A
Sbjct: 399 PSKRQTLLFSATMNSKINQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDEL-KPA 457
Query: 360 VLLSLCSKT---FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+L L K +V++F K+ AH+L+I+ GL +K AELHG+L+Q QRL+A+ F
Sbjct: 458 LLFHLIRKLDDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGF 517
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +++FV +
Sbjct: 518 KSLQVPVLICTDLASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTARAGREGRSISFVGE 577
Query: 477 N--DRSLLKAIAKRAGSKLK-----SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
+ DR+++K K A K R+V + + +K+ +D +A IL+EE++E+
Sbjct: 578 SSQDRNVVKNAIKSAEENKKQDTVVGRMVDWAKVEEINKLTTNKDDVIAEILEEEKQEKE 637
Query: 530 LRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ +AEME K ENM+ HK+EI ARP+RTWF TE EKK
Sbjct: 638 ILRAEMEVRKGENMLKHKDEISARPRRTWFQTEGEKK 674
>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
Length = 782
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/448 (49%), Positives = 307/448 (68%), Gaps = 7/448 (1%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+
Sbjct: 152 ANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAY 211
Query: 180 ALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
LPTLERLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K
Sbjct: 212 MLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKA 271
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++
Sbjct: 272 QEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINS 331
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
C K RQTMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E
Sbjct: 332 CCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+L SL +TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F++
Sbjct: 392 PILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +
Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
R ++K I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +
Sbjct: 512 RKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLS 571
Query: 539 KAE-NMIAHKEEIFARPKRTWFVTEKEK 565
K E ++ E +R WF T++++
Sbjct: 572 KTERKLLGQTNE-----RRGWFQTKQQR 594
>gi|225677534|gb|EEH15818.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
Pb03]
Length = 815
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/499 (47%), Positives = 327/499 (65%), Gaps = 22/499 (4%)
Query: 82 DNDHSDSEFDQHEDYKPEDE--DDFSNAGDT---KSFFAPADGASFHAN-----SFMELN 131
DND S +D +D D+ N + K+FFAP D S + N SF +
Sbjct: 247 DNDSVASPVAHPDDIGSDDGSGDESENPAEVEKQKAFFAPEDTTSTNDNLETAKSFQAFS 306
Query: 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191
LSRP+LR ++G++ PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYRP
Sbjct: 307 LSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYRP 366
Query: 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVV 251
+++P RV IL PTRELAVQ ++ K+A +TDI C +VGG S + QE L+ PD+++
Sbjct: 367 RKVPTSRVAILMPTRELAVQCCNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVII 426
Query: 252 ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311
ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT
Sbjct: 427 ATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSAT 486
Query: 312 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371
+T +D+LI++ L +P+RL D + TL +E VR+R RE + L++LC +
Sbjct: 487 MTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQEFVRLRPGREDKRLGYLITLCKTVYKD 546
Query: 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
VIIF K+ AHR++I+FGL LKAAELHG+++Q Q A+ + TD+
Sbjct: 547 LVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQASFAI-------ASGTLTTDLGH 599
Query: 432 R--GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
GLDI GV+TVINY P+ Y+HRVGRTARAGR G A T ++DR ++KA K
Sbjct: 600 ELIGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVKAAVKTG 659
Query: 490 ---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
G+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I+H
Sbjct: 660 RAQGAKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISH 719
Query: 547 KEEIFARPKRTWFVTEKEK 565
++EI +RPKRTWF +EKEK
Sbjct: 720 EKEIMSRPKRTWFESEKEK 738
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/476 (47%), Positives = 330/476 (69%), Gaps = 17/476 (3%)
Query: 107 AGDTKSFFAP---ADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG 162
A + ++F+AP ++ A + +F +L LSRP+++ LGY KP+PIQ+A IP+AL G
Sbjct: 184 AEEMQAFYAPESESENAKKEVHKTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLG 243
Query: 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222
+DI A+TGSGKTAAF +P +ERLLY+P ++ + RV++LTPTRELA+QV + +KI QF
Sbjct: 244 KDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQF 303
Query: 223 -TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
+++ L VGGL+ + QE L++ PDIV+ATPGR IDH+RNS S ++D + VL++DEAD
Sbjct: 304 VSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEAD 363
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
R+LE GF E++E++ L P +RQT+LFSAT+ + +LI LSL +P+R+ DP + +
Sbjct: 364 RMLEDGFQDELNEIMSLLPSKRQTLLFSATMNSRIKQLISLSLKRPVRIMIDPPKQAATK 423
Query: 342 LTEEVVRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
LT+E VRIR+ R+ + ++L +L K ++++F K AH+L+I+ GL + A
Sbjct: 424 LTQEFVRIRK-RDHLKPSLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVA 482
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRV
Sbjct: 483 ELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRV 542
Query: 459 GRTARAGREGYAVTFVTDN--DRSLLK-AI-----AKRAGSKLKSRIVAEQSITKWSKII 510
GRTARAGREG ++TFV + +RS++K AI ++ GSK R V + + +KI+
Sbjct: 543 GRTARAGREGRSITFVGEASAERSIVKDAIRGVNDSEIPGSKAVGRNVDWNQVEETNKIV 602
Query: 511 EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
E M+ V IL EE+EE+ + +AEME K EN++ HK+EI +RPKRTWF +EKEKK
Sbjct: 603 ENMDQTVQDILVEEKEEKEILRAEMELKKGENLLKHKDEIQSRPKRTWFQSEKEKK 658
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/472 (47%), Positives = 322/472 (68%), Gaps = 16/472 (3%)
Query: 112 SFFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+F+AP D A N+F L+LSRP+L+ ALGYSKP+PIQ+A IP+AL G+DI
Sbjct: 219 NFYAPENEGDEAKKQVHNTFNTLSLSRPVLKGLAALGYSKPSPIQSAAIPIALLGKDIIA 278
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IR 226
A+TGSGKTAAF +P +ERLLY+P ++ + RV++LTPTRELA+QV + +K+ +F + +
Sbjct: 279 GAVTGSGKTAAFMIPIIERLLYKPAKVTSTRVIVLTPTRELAIQVSDVGKKVGKFVNGVT 338
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGL+ + QE L+S PDIVVATPGR IDH+RNS S ++D + +L++DEADR+LE
Sbjct: 339 FGLAVGGLNLRQQEQQLKSRPDIVVATPGRFIDHIRNSASFNVDSVEILVIDEADRMLED 398
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF E++E++ L P +RQT+LFSAT+ + +LI LSL KP+R+ DP + + L +E
Sbjct: 399 GFQDELNEIMSLLPSKRQTLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAAAKLVQEF 458
Query: 347 VRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VRIR+ R+ + A+L +L K ++++F K+ AH+L+I+ GL ELHG+
Sbjct: 459 VRIRK-RDNLKPALLYTLIRKLDGAGQKRIVVFVARKETAHKLRIILGLLGQSVGELHGS 517
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ QRL+++ F+ V L+ TD+A+RGLDI ++ VINY P+ Y+HRVGRTAR
Sbjct: 518 LTQEQRLDSVNKFKSLEVPVLLCTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 577
Query: 464 AGREGYAVTFVTDND------RSLLKAIAKRAG-SKLKSRIVAEQSITKWSKIIEQMEDQ 516
AGREG +VTFV + RS ++++ + G K R V + + +K+IE+M+
Sbjct: 578 AGREGRSVTFVGEASQDRVIVRSAIRSVEENIGRGKALGRNVDWNQVEETNKLIEKMDTT 637
Query: 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
+ IL EE++E+ + +AEME K+EN++ HK EI +RPKRTWF TE EKK A
Sbjct: 638 IDEILDEEKQEKEIIRAEMELKKSENLLKHKSEIQSRPKRTWFQTETEKKNA 689
>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
Length = 782
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/448 (49%), Positives = 307/448 (68%), Gaps = 7/448 (1%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A+ SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+
Sbjct: 152 ANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAY 211
Query: 180 ALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
LPTLERLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K
Sbjct: 212 MLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKA 271
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++
Sbjct: 272 QEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINS 331
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
C K RQTMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E
Sbjct: 332 CCKTRQTMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+L SL +TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F++
Sbjct: 392 PILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ +D LIATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +
Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
R ++K I K A S +K+RI+ + I K+ + +E ++ IL EE+ ER L K E + +
Sbjct: 512 RKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLS 571
Query: 539 KAE-NMIAHKEEIFARPKRTWFVTEKEK 565
K E ++ E +R WF T++++
Sbjct: 572 KTERKLLGQTNE-----RRGWFQTKQQR 594
>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
[Ciona intestinalis]
Length = 718
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/458 (47%), Positives = 306/458 (66%), Gaps = 11/458 (2%)
Query: 118 DGASFHAN-------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
DG+ N F ++N+SRPLL+A + Y PTPIQ A IP+ L GRDIC A
Sbjct: 157 DGSGVDKNVSWDPNLGFQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAA 216
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+GKTAAF LP LERLLYR + P RVL L PTRELAVQV+S+ +AQ +++R CL
Sbjct: 217 TGTGKTAAFMLPVLERLLYRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLA 276
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GGL K QE ALR PDIV+ATPGR+IDHL N+ S DL + +LILDEADR+L+ F
Sbjct: 277 AGGLDMKSQEAALRQGPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFED 336
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+++E+++LC RQTMLFSAT++E V EL +SL P+++ + + L +E +RIR
Sbjct: 337 QMNEIIKLCSHHRQTMLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIR 396
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +LCS++F S V++F+ TK+ AHR+ I+ GL LKA ELHGNL+Q QRL
Sbjct: 397 ETREGDREAIVAALCSRSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRL 456
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
E+L+ F+ +D L+ TD+AARGLDI V+TVIN P YVHRVGRTARAG+ G +
Sbjct: 457 ESLKRFKNGDIDILVCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRS 516
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R LLK I K A + +KSR+V I+K+ + ++E +V +++ E +E+ +
Sbjct: 517 VSLVGETERKLLKEIVKFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQEKQV 576
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
+E + KAE +I + A KR WF + +++ A
Sbjct: 577 IASENQVKKAEKIIKGE----APEKRAWFQNKMQREFA 610
>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
Length = 592
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 306/442 (69%), Gaps = 1/442 (0%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A SF E+NLSRPL++A ++ + PTPIQ+A IP+AL GRD+CG A TG+GKTAAF LP
Sbjct: 15 AESFHEMNLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPV 74
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LERL+YRPK RVL+L PTREL VQV+ + ++++QFT+I+ L +GGL K+QE L
Sbjct: 75 LERLMYRPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVL 134
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R PD+V+ATPGR+IDHLRN+ S L+ + VLILDEADR+L+ F ++ E++ C ++R
Sbjct: 135 RGNPDVVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKR 194
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QTMLFSAT++ +V +L +SL KP+++ + + L +E VRIR E ++EA+L +
Sbjct: 195 QTMLFSATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCA 254
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L +TF + ++F TK HRL + GL ++ ELHGNL+Q QRLEAL F+++ +D
Sbjct: 255 LVCRTFRNHCMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFKEEDIDI 314
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L++TDVAARGLDI GVQTVINY P + Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 315 LVSTDVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEGERKVVK 374
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 543
I KRA + +KSR++ + + K+ K + ++ V +I+ EE+ E L E + +AE M
Sbjct: 375 EIVKRANNPVKSRLIPNEILEKYKKKLALIDPDVESIITEEKSESQLSAMENQINRAEKM 434
Query: 544 IAHKEEIFARPKRTWFVTEKEK 565
+ K E A PKR WF T +E+
Sbjct: 435 VKVKGEPAA-PKRQWFQTHQER 455
>gi|405953609|gb|EKC21239.1| Putative ATP-dependent RNA helicase DDX27 [Crassostrea gigas]
Length = 740
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/440 (48%), Positives = 309/440 (70%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ++N+SRPL++ + ++KPTPIQ A IP+AL GRD+C A+TGSGKT AF LP LE
Sbjct: 169 TFQDMNVSRPLMKGLGQMNFTKPTPIQTATIPIALLGRDLCACAVTGSGKTVAFMLPILE 228
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL+YR + A RVL+L PTRELAVQVH++ ++AQ+T+I L GGL K QE ALR
Sbjct: 229 RLMYRTQEEAATRVLVLVPTRELAVQVHTVARQLAQYTNIEIVLSAGGLDIKAQEAALRM 288
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDIV+ATPGR+IDHL NS + L ++ +L+LDEADR+L+ F+ +++E++R C + RQT
Sbjct: 289 KPDIVIATPGRLIDHLHNSPNFSLRNIEILVLDEADRMLDEYFAEQMNEIIRQCAQTRQT 348
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT++E V +L +SL +P+++ + + L +E +RIR RE ++EA++ SL
Sbjct: 349 MLFSATMSEAVQDLASVSLKQPVKIFVNQNTDVALGLRQEFIRIRPNREGDREAIIASLV 408
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S+TF I+F TK+ AHR+ I+ GL + ELHGNL+QAQRLE L+ F++ VD L+
Sbjct: 409 SRTFRDHCIVFIQTKKQAHRMHIILGLLGVNVGELHGNLSQAQRLETLKRFKQADVDVLL 468
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI GV+TVIN+ P + YVHRVGRTARAG++G +VT V + +R LLK +
Sbjct: 469 ATDLAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKKGRSVTLVGEQERKLLKEV 528
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K+A + LK+RIV ++ I+K+ I ++E + I +E+EE LR E + KA+ ++
Sbjct: 529 VKKARTPLKTRIVPQEVISKYRDKISKLEKDLEEIETQEKEESYLRATENQMNKAKKLLE 588
Query: 546 HKEEIFARPKRTWFVTEKEK 565
++ KR+WF T KE+
Sbjct: 589 REKNGMDDQKRSWFQTHKER 608
>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
Length = 563
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/436 (50%), Positives = 300/436 (68%), Gaps = 4/436 (0%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPL++A + + PTPIQ A IP+AL G+D+C A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLLY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+P++ P RVL+L PTRELAVQVH + ++AQFT + L GGL + QE ALR PD+
Sbjct: 61 KPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRLGPDV 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
V+ATPGR+IDHL N+ S DL + VLILDEADR+L+ F +++E++RLC ++RQTMLFS
Sbjct: 121 VIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+++ V +L +SL P++L + + L +E +RIR RE ++EA+ + ++TF
Sbjct: 181 ATMSDQVKDLAAVSLENPVKLFVNENTDVAFNLRQEFIRIRPNREGDREAI---IAARTF 237
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
I+F TK AHR+ I+ GL L ELHGNL+Q QRLE L+ F+ VD L+ATD+
Sbjct: 238 HDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDVLLATDL 297
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489
AARGLDI GV+TVIN+ P L Y+HRVGRTARAG+ G AVT V + +R LK + K A
Sbjct: 298 AARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLKDVVKNA 357
Query: 490 GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 549
+ +KSR+V ++ I K+ IE+ME VA IL+ E EE+ + E + +A+NM+ +
Sbjct: 358 RNPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEMASTENKMNRAQNMLNSPDN 417
Query: 550 IFARPKRTWFVTEKEK 565
+ A+ KR WF T KE+
Sbjct: 418 M-AQQKRGWFQTHKER 432
>gi|357617988|gb|EHJ71096.1| putative DEAD box ATP-dependent RNA helicase [Danaus plexippus]
Length = 776
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/444 (48%), Positives = 308/444 (69%), Gaps = 4/444 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +NLSRP+L+A +L Y PTPIQAA IP+AL G+DIC A TG+GKTAA+ +P LE
Sbjct: 168 TFYMMNLSRPMLKAIASLNYVHPTPIQAATIPIALLGKDICACAATGTGKTAAYMVPVLE 227
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLY+P RVL+L PTREL QVH++ ++AQFT + L VGGL K QE+ LR
Sbjct: 228 RLLYKPTE-RRTRVLVLVPTRELGAQVHTVTRQLAQFTSVTIGLSVGGLDVKYQESVLRR 286
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDH+RN+ S DL+ + VLILDEADR+L+ F+ ++ E++R C +RQT
Sbjct: 287 HPDVVIATPGRLIDHVRNTPSFDLNSIEVLILDEADRMLDEYFAEQMKEIIRQCSPKRQT 346
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+++ V +L +SL KP++L D + L +E VRIR+ RE ++EA+L +L
Sbjct: 347 MLFSATMSDQVRDLAAVSLKKPVKLFLDSNKDVAFNLRQEFVRIRKERECDREAILAALV 406
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TF + +IF TK+ AHRL + GL +K AELHG L Q QRL++L+ FR++ VD L+
Sbjct: 407 CRTFKDRAVIFVQTKKQAHRLHVALGLLGIKVAELHGALNQPQRLDSLKRFREEQVDVLV 466
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV+TV+N+ P + Y+HRVGRTARAGR G +V+ + +R+L+K I
Sbjct: 467 ATDVAARGLDIPGVKTVLNFTLPATIEHYIHRVGRTARAGRAGVSVSLAGEGERNLVKTI 526
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
+RA +KSR++ + K+ + ++E ++AAIL EE ++ L+K E + K E+ I
Sbjct: 527 VRRARRAVKSRVLPADIVAKYRDKLAKLEPEIAAILDEEYADKQLKKMEKQTNKLESAIK 586
Query: 546 HKEE---IFARPKRTWFVTEKEKK 566
+++ + A + WF T KEK+
Sbjct: 587 NEKTDTPMEAPRQHDWFQTPKEKR 610
>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
Length = 694
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/564 (44%), Positives = 362/564 (64%), Gaps = 34/564 (6%)
Query: 20 SEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVS--DEHF------------RRRTTSV 65
+ Y E EE D + P K+ K+ DF + + +S DE+ R+ T +
Sbjct: 7 TNYSESSDEEDDFQ-PRKQRKKGSKDFDSNFQFISSTDEYNQDPWNDLSKYIKRKPKTKL 65
Query: 66 DFKITKSLQQRSVP--IVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFH 123
D KI K ++ + I D+ + +Q++D ED+ T S
Sbjct: 66 DDKIRKIRKEYNEQDGIEDDFKIEPNTNQNDDTISLSEDELKKDSQTYS----------- 114
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+F ++NLSRPLL+A A+ + +PTPIQAA IP+AL GRDICG A TG+GKTAA+ LPT
Sbjct: 115 --TFYQMNLSRPLLKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPT 172
Query: 184 LERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERLLYRP PA+ RVL+L PTREL VQV+ + +++ QFT + L VGGL K+QE+
Sbjct: 173 LERLLYRPLDGPAVSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESV 232
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR PDIV+ATPGR+IDHL N+ + L+++ VLILDEADR+L+ F+ ++ +V+ C +
Sbjct: 233 LRKNPDIVIATPGRLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCART 292
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
+QT+LFSAT+TE+V +L +SL P+++ D + L +E +RIR+ RE ++EA+L
Sbjct: 293 KQTILFSATMTEEVKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILA 352
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+L +TF +IF TK+ AHRL IL GL LK ELHGNLTQ QRLE L+ F+++ +D
Sbjct: 353 ALVCRTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLQKFKEEEID 412
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI GV+TVIN+ P L Y+HRVGRTARAGR G +V+ + +R L+
Sbjct: 413 ILLATDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERFLV 472
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K I K+A + +K+RI+ I K++K ++ +E V ILQEE+ ++ L K E +A + E
Sbjct: 473 KEIIKQAKNPIKNRIIPPDIIEKYNKKLQSLEVDVERILQEEKNDKELAKIENQANRVEK 532
Query: 543 MIAHKEEIFARPKRTWFVTEKEKK 566
++ ++ + +R+WF T+KE+K
Sbjct: 533 LLKDED---TKDQRSWFQTKKERK 553
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 320/472 (67%), Gaps = 10/472 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
+DED++ DT SFF+ A + SF ++NLSRPLL+A GY PTPIQ+ CIPL
Sbjct: 248 KDEDNY----DT-SFFSEAPADIEVSKSFNDMNLSRPLLKAIYEKGYEHPTPIQSRCIPL 302
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
L GRDIC SA+TGSGKTAAF LPTLERLLYR + V+ L PTRELA Q +
Sbjct: 303 LLKGRDICASAMTGSGKTAAFILPTLERLLYRDRSRKETLVVALLPTRELAAQCYEDCSH 362
Query: 219 IAQFTDIRCCLVVGG-LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
Q+TDIRCCL+ GG L + Q L+S P+I++ATPGR++DHL NS + LD++ VLIL
Sbjct: 363 FLQYTDIRCCLITGGNLKIQKQIQVLQSKPEIIIATPGRVVDHLLNSPNFRLDEVEVLIL 422
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEADRLLELGF +I ++ P RQTMLFSAT+T+D+++L+KLSL P+R+S D
Sbjct: 423 DEADRLLELGFEPQIKTILDHIPTARQTMLFSATMTDDIEQLVKLSLKNPIRVSCDSRTG 482
Query: 338 RPSTLTEEVVRIRRMRE-VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
S LT+E +++ + ++A+LLSLC+++F S+VIIF TK +LK+L L LK
Sbjct: 483 VASGLTQEFIKLADDENIIMKQAILLSLCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLK 542
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
+EL +LTQA RL+ L F DFL+ TDVA+RGLDI GV+TVIN+ P +L +Y+H
Sbjct: 543 VSELSSSLTQAVRLKELYKFASHETDFLVCTDVASRGLDIKGVKTVINFDMPLNLKTYIH 602
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAI---AKRAGSKLKSRIVAEQSITKWSKIIEQM 513
RVGRTARAG G AV+ +++ ++L+ I +K+ G ++ R++ +SI W+ IE+M
Sbjct: 603 RVGRTARAGASGVAVSMSSESSIAILRKIVRHSKKKGQSVQQRVIPTESIEFWTDKIEEM 662
Query: 514 EDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ Q+ + Q+ R E +++AEM A K EN+ +E+I +RP++ W +++ ++
Sbjct: 663 KPQLKELEQQLRMEEEMQQAEMLAAKNENIEEFREDIMSRPRKEWIMSKAQR 714
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/472 (47%), Positives = 318/472 (67%), Gaps = 18/472 (3%)
Query: 112 SFFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 210 NFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIA 269
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIR 226
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 270 GAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGIT 329
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE
Sbjct: 330 FGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEE 389
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E
Sbjct: 390 GFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEF 449
Query: 347 VRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VRIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+
Sbjct: 450 VRIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGS 508
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTAR
Sbjct: 509 LTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 568
Query: 464 AGREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQME 514
AGREG +VTFV + DRS+++A K K R V I + +K++E M
Sbjct: 569 AGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMN 628
Query: 515 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
D + IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 629 DTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 680
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 318/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 217 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 276
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 277 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 336
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 337 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 396
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 397 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 456
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 457 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 515
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 516 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 465 GREGYAVTFVTDN--DRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV ++ DRS+++A K K R V I + +K++E M D
Sbjct: 576 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMND 635
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 636 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 686
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 318/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 215 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 274
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 275 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 334
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 335 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 394
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 395 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 454
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 455 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 513
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 514 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 573
Query: 465 GREGYAVTFVTDN--DRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV ++ DRS+++A K K R V I + +K++E M D
Sbjct: 574 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMND 633
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 634 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 684
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 337/539 (62%), Gaps = 65/539 (12%)
Query: 111 KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFAP + SF E++LSRP+LR ++G++KPTPIQA IP++L G+D+
Sbjct: 276 KEFFAPEEENQPKKKGEMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVV 335
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 336 GGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIK 395
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 396 FCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLED 455
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTE--------------------DVDELIKLSLTK 326
GF+ E L E VD LI+ L K
Sbjct: 456 GFADE--------------------LNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNK 495
Query: 327 PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL 386
P+R+ AD K TL +E VR+R RE +E LL +C +T +VIIF K+ AH++
Sbjct: 496 PVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTIYTERVIIFFRQKKIAHKM 555
Query: 387 KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446
+I+FGL L AELHG++ QAQR++++E FR V+FL+ATD+A+RGLDI GV TVINY
Sbjct: 556 RIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYE 615
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSI 503
P+ YVHRVGRTARAGR G A+T + DR ++KA K G+K+ SRI+
Sbjct: 616 APQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADA 675
Query: 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEK 563
KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI +++EI +RPKRTWF T++
Sbjct: 676 DKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQE 735
Query: 564 EKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAARE 622
+KK A A +A + +++K K + E L K+R+KL+ +E
Sbjct: 736 DKKKAKAAGRAELN------------------GVRDKLKSKNEGKLSNKDRKKLDTMQE 776
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 337/539 (62%), Gaps = 65/539 (12%)
Query: 111 KSFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
K FFAP + SF E++LSRP+LR ++G++KPTPIQA IP++L G+D+
Sbjct: 276 KEFFAPEEENQPKKKGEMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVV 335
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A+TGSGKTAAF +P LERLLYRPK++P RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 336 GGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIK 395
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S +D + +L+LDEADR+LE
Sbjct: 396 FCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLED 455
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTE--------------------DVDELIKLSLTK 326
GF+ E L E VD LI+ L K
Sbjct: 456 GFADE--------------------LNEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNK 495
Query: 327 PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL 386
P+R+ AD K TL +E VR+R RE +E LL +C +T +VIIF K+ AH++
Sbjct: 496 PVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTIYTERVIIFFRQKKIAHKM 555
Query: 387 KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446
+I+FGL L AELHG++ QAQR++++E FR V+FL+ATD+A+RGLDI GV TVINY
Sbjct: 556 RIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRGLDIKGVDTVINYE 615
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSI 503
P+ YVHRVGRTARAGR G A+T + DR ++KA K G+K+ SRI+
Sbjct: 616 APQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDPADA 675
Query: 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEK 563
KW I+++ED++ I+QEE+EE+ L+ EM+ K ENMI +++EI +RPKRTWF T++
Sbjct: 676 DKWQAEIDELEDEIEEIMQEEKEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQE 735
Query: 564 EKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAARE 622
+KK A A +A + +++K K + E L K+R+KL+ +E
Sbjct: 736 DKKKAKAAGRAELN------------------GVRDKLKSKNEGKLSNKDRKKLDTMQE 776
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 318/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 214 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 273
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 274 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 333
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 334 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 393
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 394 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 453
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 454 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 512
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 513 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 572
Query: 465 GREGYAVTFV--TDNDRSLLKAIAKR-------AGSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV + DRS+++A K K R V I + +K++E M+D
Sbjct: 573 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMDD 632
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 633 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 683
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 318/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 217 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 276
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 277 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 336
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 337 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 396
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 397 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 456
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 457 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 515
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 516 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 465 GREGYAVTFVTDN--DRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV ++ DRS+++A K K R V I + +K++E M D
Sbjct: 576 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVEPMND 635
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 636 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 686
>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
Length = 807
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 369/612 (60%), Gaps = 62/612 (10%)
Query: 12 DEEIEELQSEYEEDQGEEVDVE---KPSKRAKQSPWDFAA---YSESVSDEHF------- 58
D+E+E L EE DVE +PSK KQ DF + + SVS+ +
Sbjct: 36 DDEVENL--------SEESDVEVEYQPSKLKKQKQGDFDSGFKFVSSVSEYNHDTWDDLM 87
Query: 59 ----RRRTTSVDFKITKSLQQRSVPI---------VDNDHSDSEFDQHEDYKPEDEDDFS 105
++ VD KI ++ RS VD D ++E D +D D
Sbjct: 88 KFVKKKNRGKVDDKIANVIKGRSGKNAEVLNGDDEVDPDSYNAEIDLSDDELKHDTMRTK 147
Query: 106 NAGDTKSFFAPADG-------------------ASFHANSFMELNLSRPLLRACEALGYS 146
K + DG + +SF ++NLSRPL++A LGY
Sbjct: 148 EKKGRKREVSENDGKVEIEDEDEEQQDFFEEAGGNEEISSFYQMNLSRPLMKAIGFLGYI 207
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPT 205
PTPIQAA IP+AL GRD+CG A TG+GKTAA+ LPTLERLLY+P A+ RVL+L PT
Sbjct: 208 YPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLERLLYKPSAAQAVTRVLVLVPT 267
Query: 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
REL QV+ + +++ Q+T I + +GGL K QE LR+ PDIV+ATPGR+IDH++N+
Sbjct: 268 RELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLRTNPDIVIATPGRLIDHIKNTP 327
Query: 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
S LD + VLILDEADR+L+ F+ ++ E+++ C K RQTMLFSAT+T+ V +L +SL+
Sbjct: 328 SFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQTMLFSATMTDQVKDLAAVSLS 387
Query: 326 KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385
KP+++ + + L +E +RIR R+ ++E +L +L +TF ++F TK+ AHR
Sbjct: 388 KPVKVFVNNNQTVAFNLRQEFIRIRESRDADREPILAALICRTFHDHCMVFVQTKKTAHR 447
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
L+IL GL +KA ELHG+LTQ+QRLE+L+ F+ + +D L+ATDVAARGLDI GV+TVIN+
Sbjct: 448 LRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQIDVLVATDVAARGLDISGVKTVINF 507
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITK 505
P + Y+HRVGRTARAG+ G +V+ + +R ++K I K A + +K+RI+ + + K
Sbjct: 508 VMPATMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKDIIKNAVNPVKNRIIPNEIVEK 567
Query: 506 WSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ K ++ +E+++ +LQEE E++LR+ E + +K EN + + I P R WF E+
Sbjct: 568 YRKKVQALEEEIENVLQEEHAEKLLRQTEQQLSKTENKL---KGISNGPSREWFQNSHER 624
Query: 566 -----KLAVKAD 572
+L++K D
Sbjct: 625 HQEKERLSIKTD 636
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 317/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 219 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 278
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 279 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 338
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 339 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 398
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 399 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 458
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 459 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 517
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 518 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 577
Query: 465 GREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV + DRS+++A K K R V I + +K++E M D
Sbjct: 578 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMND 637
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 638 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 688
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/472 (47%), Positives = 319/472 (67%), Gaps = 20/472 (4%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 218 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 277
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 278 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 337
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 338 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 397
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 398 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 457
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 458 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 516
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 517 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 576
Query: 465 GREGYAVTFVTDN--DRSLLKAIAKRA--------GSKLKSRIVAEQSITKWSKIIEQME 514
GREG +VTFV ++ DRS+++A K G L + Q I + +K++E M
Sbjct: 577 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGXNVDWVQ-IEETNKLVESMN 635
Query: 515 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
D + IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 636 DTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 687
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 361/615 (58%), Gaps = 74/615 (12%)
Query: 14 EIEELQSEYEEDQGEEVDVEKPSK---RAKQSPWDFAAYSESVS--------DEHFRRRT 62
EI+E S+ E+ E V V K K A++ DF S+S+ ++ +++
Sbjct: 2 EIDE--SDDEQVNDEAVTVRKKKKIANAAEEFAQDFVFESDSLYVDRETEDLQKYLKKQN 59
Query: 63 -TSVDFKITKSLQQRSVP---IVDNDHSDSEFDQHEDY---------------------- 96
TS+D KI + + ++ IVDN+ D E ++ +D
Sbjct: 60 PTSLDEKIAEMRKLKNTGKAVIVDNEADDVEINEDDDVQQLGGKETRDTVREKKKAGKSR 119
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQA 153
K D DDF F A DG S N SF ++NLSR +L+AC GYS PTPIQ
Sbjct: 120 KVADGDDF--------FSALIDGKSLDTNVNVSFEQMNLSRQILKACAGAGYSDPTPIQQ 171
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
ACIP+ALTG+DIC A TG+GKTAAF LP LER++YRPK RVL+L PTRELA+QV
Sbjct: 172 ACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVF 231
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL---- 269
+ K++ F + CL GGL K QE ALRS PD+VVATPGR+IDHL NS S +L
Sbjct: 232 QVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLASIE 291
Query: 270 ------------------DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311
+L VL+LDEADR+LE F +++EL+RLC + RQT+LFSAT
Sbjct: 292 VFLSLEKEKFRNSEIQESKNLKVLVLDEADRMLEEAFRDQMNELIRLCAENRQTLLFSAT 351
Query: 312 LTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371
+TE++DEL +SL KP+++ + + L +E +RIR RE ++E+++ +L ++TF +
Sbjct: 352 MTEEIDELASMSLKKPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVAALVTRTFQT 411
Query: 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
I+F TK+ R++IL GL +K ++ +LTQ QR+E+L F+K +D L++TD+A+
Sbjct: 412 NTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKGEIDVLVSTDLAS 471
Query: 432 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK-RAG 490
RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +++ V + +R LLK I A
Sbjct: 472 RGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLLKEIVNSNAD 531
Query: 491 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 550
LK R+VA + + + + I+++E+ + I +E+R E+ LR AE K + + E
Sbjct: 532 RTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKTQQALEAVENG 591
Query: 551 FA-RPKRTWFVTEKE 564
A + KR W + E +
Sbjct: 592 GAVQEKRVWMMKESQ 606
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/471 (47%), Positives = 317/471 (67%), Gaps = 18/471 (3%)
Query: 113 FFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP D A +F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 185 FYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAG 244
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRC 227
A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV + ++IA+F + I
Sbjct: 245 AVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITF 304
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE G
Sbjct: 305 GLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 364
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E++E++ L P RQ +LFSAT+ + L+ LSL KP+R+ DP K + LT+E V
Sbjct: 365 FQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFV 424
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + ELHG+L
Sbjct: 425 RIRK-RDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 483
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 484 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 543
Query: 465 GREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQMED 515
GREG +VTFV + DRS+++A K K R V I + +K++E M D
Sbjct: 544 GREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMND 603
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 604 TIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 654
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 332/488 (68%), Gaps = 18/488 (3%)
Query: 112 SFFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
SF+AP ++ S ++F L LSRP+L+ LGY+KP+PIQ+A IP+ L+G+DI
Sbjct: 214 SFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIA 273
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIR 226
A+TGSGKTAAF +P +ERLLY+P ++ + RV++LTPTRELA+Q+ + +KI ++ + +
Sbjct: 274 GAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLT 333
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGL+ + QE L++ PDIV+ATPGR IDH+RNS S ++D + VL++DEADR+LE
Sbjct: 334 FGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEE 393
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF E++E++ L P +RQT+LFSAT+ + LI LSL KP+R+ +P + + LT+E
Sbjct: 394 GFQEELNEILTLLPSKRQTLLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEF 453
Query: 347 VRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VRIR+ R+ + A+L L K T ++++F K+ AH+L+I+ GL +K ELHG+
Sbjct: 454 VRIRK-RDHLKPALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGS 512
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VIN+ P+ Y+HRVGRTAR
Sbjct: 513 LTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTAR 572
Query: 464 AGREGYAVTFV--TDNDRSLLKAIAK-----RAGSKLKSRIVAEQSITKWSKIIEQMEDQ 516
AGREG +VTFV + DRS++++ K + +K SR V I + +K++E +
Sbjct: 573 AGREGRSVTFVGESSQDRSIVRSAIKSVEESSSKNKAVSRNVEWTQIEETNKLVESFGET 632
Query: 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 576
+ IL EE++E+ + +AEM+ K ENMI HK+EI +RPKRTWF +E EKK A D ++
Sbjct: 633 IDDILVEEKQEKEILRAEMQLRKGENMIKHKKEIQSRPKRTWFQSEAEKKNAKILD--TL 690
Query: 577 EKGKGSGN 584
+K K + N
Sbjct: 691 QKNKKTVN 698
>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108873494|gb|EAT37719.1| AAEL010317-PA [Aedes aegypti]
Length = 804
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/469 (47%), Positives = 323/469 (68%), Gaps = 10/469 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
EDE+D + + FF A G + +SF ++NLSRPL++A LGY PTPIQAA IP+
Sbjct: 161 EDEED-----EPQDFFEEA-GGNEEISSFYQMNLSRPLMKAIGVLGYIYPTPIQAATIPI 214
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIE 217
AL GRDICG A TG+GKTAA+ LPTLERLLY+P A+ RVL+L PTREL QV+ + +
Sbjct: 215 ALLGRDICGCAATGTGKTAAYMLPTLERLLYKPSAAQAVTRVLVLVPTRELGAQVYQVSK 274
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
++ QFT I + +GGL K QE LR+ PD+V+ATPGR+IDH++N+ S LD + VLIL
Sbjct: 275 QLTQFTSIEVGIAIGGLDVKAQEAVLRTNPDVVIATPGRLIDHIKNTPSFSLDSIEVLIL 334
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEADR+L+ F+ ++ E+++ C K RQTMLFSAT+T+ V +L +SLTKP+++ + +
Sbjct: 335 DEADRMLDEYFAEQMKEIIQSCSKTRQTMLFSATMTDQVKDLAAVSLTKPVKVFVNNNQT 394
Query: 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
L +E +RIR RE ++E +L +L +TF ++F TK+ AHRL+IL GL +K+
Sbjct: 395 VAFNLRQEFIRIREGREADREPLLAALICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKS 454
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG+LTQ+QRLE+L+ F+ + VD LIATDVAARGLDI GV+TVIN+ P + Y+HR
Sbjct: 455 GELHGDLTQSQRLESLKQFKDEQVDVLIATDVAARGLDISGVKTVINFVMPITMEHYIHR 514
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
VGRTARAG+ G +V+ + +R ++K I K A S +K+RI+ + + K+ K + +E+++
Sbjct: 515 VGRTARAGKAGVSVSLAGELERKIVKDIIKNAVSPVKNRIIPTEIVDKYRKKVLALEEEI 574
Query: 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+L EER E++L + E + + E + + + + P R WF T E+K
Sbjct: 575 EKVLCEERAEKMLLQTEQQLNRTERKL---KGVVSGPSREWFQTHHERK 620
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/486 (46%), Positives = 328/486 (67%), Gaps = 21/486 (4%)
Query: 99 EDEDDFSNAGDTKSFFAPADGA-----SFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
E ED D F+AP + + H N F L+LSRP+L+ LGY+KP+PIQ+
Sbjct: 193 EQEDSVEAMAD---FYAPEEESKEAKKQVHTN-FNTLSLSRPVLKGLSDLGYTKPSPIQS 248
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
A IP+ L G+DI A+TGSGKTAAF +P +ERLLY+P I + RV++LTPTRELA+QV
Sbjct: 249 ATIPIGLLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPANIASTRVIVLTPTRELAIQVS 308
Query: 214 SMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272
+ ++I ++ + + L VGGL+ + QE L++ PD+V+ATPGR IDH+RNS S ++D +
Sbjct: 309 DVGKRIGKYVNGLTFGLAVGGLNLRQQEQELKTRPDVVIATPGRFIDHIRNSASFNVDSV 368
Query: 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332
VL++DEADR+LE GF E++E++ L P +RQT+LFSAT+ + +LI LSL +P+R+
Sbjct: 369 EVLVIDEADRMLEDGFQEELNEIMSLLPTKRQTLLFSATMNSKIKQLISLSLRRPVRIMI 428
Query: 333 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS---KVIIFSGTKQAAHRLKIL 389
+P + + LT+E VRIR+ R++ + A+L L K +S ++++F K+ AHRL+I+
Sbjct: 429 NPPKQAAARLTQEFVRIRK-RDLLKPALLYYLIRKLDSSSQKRIVVFVSRKEMAHRLRII 487
Query: 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449
GL +K AELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+
Sbjct: 488 MGLLGMKVAELHGSLTQEQRLQSVNQFKSLEVPVLICTDLASRGLDIPKIEVVINYDMPK 547
Query: 450 DLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKAIAKRA-----GSKLKSRIVAEQS 502
Y+HRVGRTARAGREG +VTFV + DRS++++ K A +++ R V
Sbjct: 548 SYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIKSAEEGENQNQVLGRNVEWNK 607
Query: 503 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE 562
+ + SK+I+ + + IL EE++E+ + +AEME K EN++ HK EI ARP+RTWF TE
Sbjct: 608 VDEVSKLIDSNGETIDDILDEEKQEKEILRAEMELRKGENLMKHKTEIQARPRRTWFQTE 667
Query: 563 KEKKLA 568
EKK A
Sbjct: 668 DEKKNA 673
>gi|350416437|ref|XP_003490948.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
impatiens]
Length = 741
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/506 (49%), Positives = 345/506 (68%), Gaps = 18/506 (3%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
HA +F ++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LP
Sbjct: 157 HA-TFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLP 215
Query: 183 TLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
TLERLLYRP P+I RVL+L PTREL VQV+ + ++++QFT I L VGGL K+QE
Sbjct: 216 TLERLLYRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKVQEA 275
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR PDIV+ATPGR+IDHLRN+ S LD + VLILDEADR+L+ F+ ++ +V+ C +
Sbjct: 276 VLRKNPDIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSR 335
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQT+LFSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L
Sbjct: 336 SRQTILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAIL 395
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L +TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +
Sbjct: 396 AALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEI 455
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
D L+ATDVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL
Sbjct: 456 DILLATDVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGRVGVSVSLAGEQERSL 515
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
+K I K A + +K+RI+ I K+SK ++ +E V IL+EER ER L K E +A +AE
Sbjct: 516 VKEIIKNAKNPVKNRIILPDIIDKYSKKLQSLETDVNKILEEERNERELAKIENQANRAE 575
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKKLAVK----ADKASIEKGKGSGNEVTSAQQAEDLKI 597
++ K E +RTWF T+KE+K + +K + KG+ E ++ I
Sbjct: 576 KLL--KNESNKGTQRTWFQTQKERKEEKEKLSLTEKQNTNKGQKQNKEPSNI-------I 626
Query: 598 KEKRKREREKNLPRKERRKLEAAREM 623
+EK+KR +E P++E + A +E+
Sbjct: 627 EEKKKRSKE---PKQETAEDRAKKEL 649
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/481 (45%), Positives = 325/481 (67%), Gaps = 20/481 (4%)
Query: 107 AGDTKSFFAPA----DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG 162
A + F+AP D SF L+LSRP+L+ LGY+KP+PIQ+A IP+AL G
Sbjct: 227 AEEVAKFYAPEAEGDDAKKQTHTSFNTLSLSRPVLKGLANLGYNKPSPIQSATIPIALLG 286
Query: 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222
+DI A+TGSGKTAAF +P +ERLL++P ++ + RV++LTPTRELA+Q+ + +KI +F
Sbjct: 287 KDIIAGAVTGSGKTAAFMIPIIERLLFKPAKVSSTRVIVLTPTRELAIQIADVAKKIGKF 346
Query: 223 TD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281
+ + L VGGL+ + QE L+ PDIV+ATPGR IDH+RNS S ++D + +L++DEAD
Sbjct: 347 VNGLTFGLAVGGLNLRQQEQILKQRPDIVIATPGRFIDHVRNSASFNVDSVEILVMDEAD 406
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
R+LE GF E++E+++L P +RQTMLFSAT+ + +LI LSL KP+R+ +P + S
Sbjct: 407 RMLEEGFQEELNEIMQLLPTKRQTMLFSATMNSKIKQLINLSLKKPVRIMINPPKQAASK 466
Query: 342 LTEEVVRIRRMREVNQEAVLLSLCSKT--FTSK-VIIFSGTKQAAHRLKILFGLAALKAA 398
LT+E VRI R R+ + A+L +L K ++ K +++F K+ AH+L+I+ GL + A
Sbjct: 467 LTQEFVRI-RTRDHLKPALLFNLIKKLDEYSQKRMVVFVARKETAHKLRIILGLLGMNVA 525
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHG+LTQ QRLE++ F+ + LI TD+A+RGLDI ++ VINY P+ Y+HRV
Sbjct: 526 ELHGSLTQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYDIYLHRV 585
Query: 459 GRTARAGREGYAVTFV--TDNDRSLLK-AIA--------KRAGSKLKSRIVAEQSITKWS 507
GRTARAGREG +V+ V + N+RS+++ AI K GS+ R V + + +
Sbjct: 586 GRTARAGREGRSVSLVGESSNERSIVRDAIKSVEDVSKIKNDGSRALGRQVNWNQVEEIN 645
Query: 508 KIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
K++E M V +L+EE++E+ + +AEM+ K EN++ H+ EI ARP+RTWF +E EKK
Sbjct: 646 KLVENMAGTVEDVLEEEKQEKEILRAEMQIRKGENLLKHRAEIQARPRRTWFQSETEKKN 705
Query: 568 A 568
A
Sbjct: 706 A 706
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/469 (45%), Positives = 308/469 (65%), Gaps = 14/469 (2%)
Query: 100 DEDDFSNAGDTKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACI 156
+ DDF F A DG S N SF ++NLSR +L+AC GY+ PTPIQ ACI
Sbjct: 135 ENDDF--------FSALIDGKSLDTNVNVSFEQMNLSRQILKACAGAGYTDPTPIQQACI 186
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
P+AL+G+DIC A TG+GKTAAF LP LER++YRPK RVL+L PTRELA+QV +
Sbjct: 187 PVALSGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVF 246
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
K++ F + CL GGL K QE ALRS PD+VVATPGR+IDHL NS + +L + VL+
Sbjct: 247 RKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPNFNLGSIEVLV 306
Query: 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
LDEADR+LE F +++EL+RLC + RQT+LFSAT+TE++DEL +SL +P+++ + +
Sbjct: 307 LDEADRMLEEAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLQRPVKIFINENT 366
Query: 337 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
L +E +RIR RE ++E+++ +L ++TF + I+F TK+ R++IL GL +K
Sbjct: 367 DTALKLRQEFIRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIK 426
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
++ +LTQ QR+E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+H
Sbjct: 427 VGQMQSSLTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIH 486
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMED 515
RVGRTARAG+ G +++ V + +R LLK I A LK R+VA + + + I+ +E+
Sbjct: 487 RVGRTARAGKAGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRSRIDDLEE 546
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
+ I +E+R E+ LR AE K ++ + E +R W + E +
Sbjct: 547 TIQQIDEEDRAEKELRIAESSMAKTQHALETGEA--GNERRVWLMKESQ 593
>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 747
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/467 (47%), Positives = 319/467 (68%), Gaps = 13/467 (2%)
Query: 112 SFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
S+FA + + H + SF L LSRP+L+A ALGYSKP+ IQ+A IP+AL G+DI
Sbjct: 224 SYFASDENSKSHQSEHQSFQSLKLSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAG 283
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRC 227
A+TGSGKTAA+ +P +ERLLY+P ++P+ RV++L PTRELA+QV + +KI QF + +
Sbjct: 284 AVTGSGKTAAYMIPIIERLLYKPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTF 343
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+ PDIV+ATPGR+IDH+RNS+S +++ + VL+ DEADR+LE G
Sbjct: 344 GLAVGGLNLRQQEQELKKRPDIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEG 403
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ E++ L P RQTMLFSAT+ + LI+LSL KP+R+ S L +E V
Sbjct: 404 FQKELTEILSLLPLNRQTMLFSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFV 463
Query: 348 RIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
RIR+ RE ++ A+L ++ S+ S+VI+F K+ AHRL+I GL LK +ELHG+LT
Sbjct: 464 RIRK-RESSKPALLFNILSEMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLT 522
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QRL+A+ F+ V LI TD+AARGLDI ++ VIN+ P+ Y+HRVGRTARAG
Sbjct: 523 QEQRLKAIVDFKNLTVPILICTDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAG 582
Query: 466 REGYAVTFV--TDNDRSLLKAIAKRA----GSKLKSRIVAEQSITKWSKIIEQMEDQVAA 519
R+G +++FV + DR+++K K+ K R V +++ K +I+++ E +
Sbjct: 583 RKGLSISFVGESSQDRNIVKEAIKQVETENAGKAIGRNVNWENVEKIHRILQEKESVIFD 642
Query: 520 ILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+L EE++E+ L KAE E K ENM+ ++EI +RPKRTWF+T ++KK
Sbjct: 643 VLNEEKQEKELLKAEQEIKKGENMLNFEQEIKSRPKRTWFMTSQQKK 689
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 2/442 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL++A A+ +S PTPIQ A IP+AL GRDICG A TG+GKTAA+ LP LE
Sbjct: 156 SFYQMNLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILE 215
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLY+P+ +I RVL+L PTREL VQV + +++++FT I L VGGL K+QE LR
Sbjct: 216 RLLYKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLR 275
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDHL+NS+ LD + +L+LDEADR+L+ F+ ++ E+VR C + RQ
Sbjct: 276 KQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQ 335
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T V++L +SL+ P+++ D + + L +E +RIR+ RE ++EAVL +L
Sbjct: 336 TMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAAL 395
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF + IIF TK AH+L+IL G +KA ELHGNL Q +RL+ L+ F+ +D L
Sbjct: 396 VRRTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDIL 455
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVINY P Y+HRVGRTARAGR G +V+ +++R L+K
Sbjct: 456 VATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKE 515
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K+A +KSRI+ Q + K+ K +E++ + V +L+EE EER+L+KAEM+ E +
Sbjct: 516 IVKKAERPVKSRIIPPQILLKYKKKVEELGEDVDKVLKEELEERLLQKAEMQMNAMEKKL 575
Query: 545 AHKEEIFARPK-RTWFVTEKEK 565
+ K R WF T+K++
Sbjct: 576 KSNDNNNDYDKTREWFQTKKQR 597
>gi|158514833|sp|A3LSN3.3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
Length = 741
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/453 (47%), Positives = 319/453 (70%), Gaps = 13/453 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LSRP+L+ LGY+KP+PIQ+A IP+AL GRDI A+TGSGKTAA+ +P +E
Sbjct: 223 TFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE 282
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR 244
RLLY+P ++ + RV++LTPTRELA+QV + +KI QF ++ L VGGL+ + QE L+
Sbjct: 283 RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLK 342
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RR 303
S PD+V+ATPGR+IDH+RNS S +D L VL++DEADR+L+ GF E+ E++ L PK +R
Sbjct: 343 SRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKR 402
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ + +LI+LSL +P+R+ DP + LT+E VRIR+ R+ + A+L
Sbjct: 403 QTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRK-RDHLKPALLFQ 461
Query: 364 LCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L K S++++F K++AH+L+I+ GL +K +ELHG+LTQ QRL + F+K
Sbjct: 462 LLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLI 521
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--ND 478
V LI TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV + +D
Sbjct: 522 VPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSD 581
Query: 479 RSLLK-AIAKRAGSKLKSRIVAEQ----SITKWSKIIEQMEDQVAAILQEEREERILRKA 533
R+++K AI G ++K + V+ + + +KI+E ++ + +L EE++ + + +A
Sbjct: 582 RNIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEKQAKEILQA 641
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
EM+ KA NM+ H++EI +RPKRTWF +EK+KK
Sbjct: 642 EMQLAKASNMMKHEKEIQSRPKRTWFESEKDKK 674
>gi|142982571|sp|P0C2N7.1|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
Length = 795
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/489 (47%), Positives = 313/489 (64%), Gaps = 24/489 (4%)
Query: 111 KSFFAPAD-----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K FFA + G +SF ++LSRP+LR ++G++KPTPIQA IP+AL G+D+
Sbjct: 257 KEFFAAPEETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDV 316
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKTAAF +P LERLLYRPK++P RV++LTPTRELA+Q HS+ K+A TDI
Sbjct: 317 VGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDI 376
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
+ CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE
Sbjct: 377 KFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLE 436
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T VD+LI++ L KP R+ D + TL +E
Sbjct: 437 DGFADELNEILTTLPKSRQTMLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQE 496
Query: 346 VVRIRRMREVNQEAVLLSLCSKTF--TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VR+R RE + L TS ++ QA L A H
Sbjct: 497 FVRLRPGREEKRMGYLGPYLQDPVHRTSHYLL-----QAEEDCSPDPDHLRLAGAFEH-- 549
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
+ E FR V++L+ATD+A+RGLDI G+ TVINY P+ L YVHRVGRTAR
Sbjct: 550 -RAPWKHEPGSAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTAR 608
Query: 464 AGREGYAVTFVTDNDRSLLKA---IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A+T + DR ++KA K G+K+ SR++ KW I++M+D++ I
Sbjct: 609 AGRSGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEI 668
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE--- 577
LQEE+EE+ L + EM+ K EN+I H+EEI ARPKRTWF T+++KK A + +A +
Sbjct: 669 LQEEKEEKQLAQIEMQVKKGENLIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVR 728
Query: 578 ---KGKGSG 583
K KG+G
Sbjct: 729 DAMKKKGAG 737
>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
mellifera]
Length = 739
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/445 (52%), Positives = 315/445 (70%), Gaps = 4/445 (0%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
HA +F ++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LP
Sbjct: 155 HA-TFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLP 213
Query: 183 TLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
TLERLLYRP PAI RVL+L PTREL VQV+ + ++++QFT I L VGGL K QE
Sbjct: 214 TLERLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEA 273
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR PDIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+ F+ ++ +V+ C +
Sbjct: 274 VLRRNPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSR 333
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQT+LFSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L
Sbjct: 334 SRQTILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAIL 393
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L +TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +
Sbjct: 394 AALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEI 453
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
D L+ATDVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL
Sbjct: 454 DILLATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSL 513
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
+K I K A + +K+RI+ I K+ K ++ +E V IL+EER ER L K E +A +AE
Sbjct: 514 VKEIIKNAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEERNERELAKIENQANRAE 573
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKK 566
++ K E +RTWF T+KE+K
Sbjct: 574 KLL--KNESNKNIQRTWFQTQKERK 596
>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
Length = 1453
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/489 (47%), Positives = 313/489 (64%), Gaps = 24/489 (4%)
Query: 111 KSFFAPAD-----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K FFA + G +SF ++LSRP+LR ++G++KPTPIQA IP+AL G+D+
Sbjct: 257 KEFFAAPEETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDV 316
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKTAAF +P LERLLYRPK++P RV++LTPTRELA+Q HS+ K+A TDI
Sbjct: 317 VGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDI 376
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
+ CL VGGLS K+QE LR PD+V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE
Sbjct: 377 KFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLE 436
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T VD+LI++ L KP R+ D + TL +E
Sbjct: 437 DGFADELNEILTTLPKSRQTMLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQE 496
Query: 346 VVRIRRMREVNQEAVLLSLCSKTF--TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VR+R RE + L TS ++ QA L A H
Sbjct: 497 FVRLRPGREEKRMGYLGPYLQDPVHRTSHYLL-----QAEEDCSPDPDHLRLAGAFEH-- 549
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
+ E FR V++L+ATD+A+RGLDI G+ TVINY P+ L YVHRVGRTAR
Sbjct: 550 -RAPWKHEPGSAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTAR 608
Query: 464 AGREGYAVTFVTDNDRSLLKA---IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
AGR G A+T + DR ++KA K G+K+ SR++ KW I++M+D++ I
Sbjct: 609 AGRSGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEI 668
Query: 521 LQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE--- 577
LQEE+EE+ L + EM+ K EN+I H+EEI ARPKRTWF T+++KK A + +A +
Sbjct: 669 LQEEKEEKQLAQIEMQVKKGENLIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVR 728
Query: 578 ---KGKGSG 583
K KG+G
Sbjct: 729 DAMKKKGAG 737
>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits [Scheffersomyces stipitis CBS 6054]
gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits, partial [Scheffersomyces stipitis CBS 6054]
Length = 672
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/453 (47%), Positives = 319/453 (70%), Gaps = 13/453 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LSRP+L+ LGY+KP+PIQ+A IP+AL GRDI A+TGSGKTAA+ +P +E
Sbjct: 160 TFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIE 219
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR 244
RLLY+P ++ + RV++LTPTRELA+QV + +KI QF ++ L VGGL+ + QE L+
Sbjct: 220 RLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLK 279
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RR 303
S PD+V+ATPGR+IDH+RNS S +D L VL++DEADR+L+ GF E+ E++ L PK +R
Sbjct: 280 SRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKR 339
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ + +LI+LSL +P+R+ DP + LT+E VRIR+ R+ + A+L
Sbjct: 340 QTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRK-RDHLKPALLFQ 398
Query: 364 LCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L K S++++F K++AH+L+I+ GL +K +ELHG+LTQ QRL + F+K
Sbjct: 399 LLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLI 458
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--ND 478
V LI TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV + +D
Sbjct: 459 VPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSD 518
Query: 479 RSLLK-AIAKRAGSKLKSRIVAEQ----SITKWSKIIEQMEDQVAAILQEEREERILRKA 533
R+++K AI G ++K + V+ + + +KI+E ++ + +L EE++ + + +A
Sbjct: 519 RNIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEKQAKEILQA 578
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
EM+ KA NM+ H++EI +RPKRTWF +EK+KK
Sbjct: 579 EMQLAKASNMMKHEKEIQSRPKRTWFESEKDKK 611
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/494 (45%), Positives = 332/494 (67%), Gaps = 22/494 (4%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA-----NSFMELNLSRPLLRACEALGY 145
D E++ EDED + + F+AP + S A N F L+LSRP+L+ LGY
Sbjct: 185 DNGEEHS-EDED---SPEEMAKFYAP-EAESEQATKQVHNDFNSLSLSRPVLKGLGDLGY 239
Query: 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205
++P+PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY+P +I + RV++LTPT
Sbjct: 240 TRPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLTPT 299
Query: 206 RELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
RELA+QV + +K+ ++ + + L VGGL+ + QE +L++ PDIVVATPGR IDH+RNS
Sbjct: 300 RELAIQVSDVAKKLGKYVSGLTFGLAVGGLNLRQQEQSLKARPDIVVATPGRFIDHIRNS 359
Query: 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
S ++D + VL++DEADR+LE GF E++E++ L P +RQT+LFSAT+ + +L+ L+L
Sbjct: 360 ASFNVDSVEVLVIDEADRMLEEGFQEELNEILSLLPSKRQTLLFSATMNSKIKQLVSLTL 419
Query: 325 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQ 381
+P+R+ DP + S LT+E VRIR+ R+ + +VL L K T ++++F K+
Sbjct: 420 KRPVRVMIDPPKQAASKLTQEFVRIRK-RDHLKPSVLFHLIKKLDGTGQKRMVVFVARKE 478
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
AHRL+I+ GL + ELHG+L+Q QRL+++ F+ V L+ TD+A+RGLDI ++
Sbjct: 479 MAHRLRIILGLLGISVGELHGSLSQEQRLQSVNQFKSLEVPILVCTDLASRGLDIPKIEV 538
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRA-----GSKLK 494
VINY P++ Y+HRVGRTARAGREG +V+ V ++ DRS++++ K G
Sbjct: 539 VINYDMPKNYEVYLHRVGRTARAGREGRSVSLVGESSQDRSVVRSAIKSVEESSEGQTAA 598
Query: 495 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARP 554
R + ++ + +K++ ME + IL+EE+ E+ + +AEME K EN++ HK EI ARP
Sbjct: 599 VRNIDWNNVEEINKLVVSMEGTIDEILEEEKGEKEILRAEMELRKGENLLKHKAEIEARP 658
Query: 555 KRTWFVTEKEKKLA 568
KRTWF +E EKK A
Sbjct: 659 KRTWFNSEAEKKNA 672
>gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Apis florea]
Length = 710
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/581 (45%), Positives = 360/581 (61%), Gaps = 40/581 (6%)
Query: 22 YEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSD-------------EHFRRRT-TSVDF 67
+ ED E D + P KR K+ DF + +SD ++ +R+ T +D
Sbjct: 20 FSEDSDTENDFQ-PRKRKKKENKDFDNNFQFLSDISDYNKDTWNDLNKYIKRKAKTKLDD 78
Query: 68 KITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDE----------DDFSN----------- 106
KI K + + + ++S D E K +DE D F
Sbjct: 79 KIKKIRKGSEHKLYNEIDNESNIDISEIKKIDDELSISEDELKKDTFKIKEKKKKKITKK 138
Query: 107 AGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
A + F HA +F ++NLSRPLL+A A+ + PTPIQAA IP+AL GRDIC
Sbjct: 139 ANEETIDFEEYSNIESHA-TFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDIC 197
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A TG+GKTAA+ LPTLERLLYRP PAI RVL+L PTREL VQV+ + ++++QFT I
Sbjct: 198 GCAATGTGKTAAYMLPTLERLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTI 257
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
L VGGL K QE LR PDIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+
Sbjct: 258 EVGLSVGGLDVKAQEAVLRRSPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLD 317
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
F+ ++ +V+ C + RQT+LFSAT+TE+V +L +SL KP+++ D + L +E
Sbjct: 318 EYFAEQMKYIVKQCSRSRQTILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQE 377
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
+RIR+ RE ++EA+L +L +TF V++F TK+ AHRL IL GL +K ELHGNLT
Sbjct: 378 FIRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLT 437
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QRLE L F+ + +D L+ATDVAARGLDI GV+TVIN+ P + Y+HRVGRTARAG
Sbjct: 438 QPQRLENLTKFKNEEIDILLATDVAARGLDISGVKTVINFVMPATIQHYIHRVGRTARAG 497
Query: 466 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 525
R G +V+ + +RSL+K I K A + +K+RI+ I K+ K ++ +E V IL+EER
Sbjct: 498 RVGVSVSLAGEQERSLVKEIIKNAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEER 557
Query: 526 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
ER L K E +A +AE ++ K E +RTWF T+KE+K
Sbjct: 558 NERELAKIENQANRAEKLL--KNESNKSIQRTWFQTQKERK 596
>gi|340717314|ref|XP_003397129.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
terrestris]
Length = 740
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/441 (53%), Positives = 313/441 (70%), Gaps = 4/441 (0%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
HA +F ++NLSRPLL+A A+ + PTPIQAA IP+AL GRDICG A TG+GKTAA+ LP
Sbjct: 156 HA-TFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALLGRDICGCAATGTGKTAAYMLP 214
Query: 183 TLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
TLERLLYRP P+I RVL+L PTREL VQV+ + ++++QFT I L VGGL K+QE
Sbjct: 215 TLERLLYRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKVQEA 274
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR PDIV+ATPGR+IDHLRN+ S LD + VLILDEADR+L+ F+ ++ +V+ C +
Sbjct: 275 VLRKNPDIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSR 334
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQT+LFSAT+TE+V +L +SL KP+++ D + L +E +RIR+ RE ++EA+L
Sbjct: 335 SRQTILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAIL 394
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L +TF V++F TK+ AHRL IL GL +K ELHGNLTQ QRLE L F+ + +
Sbjct: 395 AALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEI 454
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
D L+ATDVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+ + +RSL
Sbjct: 455 DILLATDVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGRVGVSVSLAGEQERSL 514
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
+K I K A + +K+RI+ I K+SK ++ +E V IL+EER ER L K E +A +AE
Sbjct: 515 VKEIIKNAKNPVKNRIILPDIIDKYSKKLQSLETDVNKILEEERNERELAKIENQANRAE 574
Query: 542 NMIAHKEEIFARPKRTWFVTE 562
++ K E +RTWF T+
Sbjct: 575 KLL--KNESNKGAQRTWFQTQ 593
>gi|358055869|dbj|GAA98214.1| hypothetical protein E5Q_04897 [Mixia osmundae IAM 14324]
Length = 835
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/455 (50%), Positives = 319/455 (70%), Gaps = 1/455 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S LSRPLL A ALG + PT IQA IP+AL G+DI S+ TGSGKT AF L LE
Sbjct: 269 SLPNARLSRPLLLALGALGLTTPTRIQAQTIPVALMGKDIVASSNTGSGKTVAFWLGVLE 328
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLLYR K+ RVL++ PTRELAVQVHS+ + +A++TDI CL VGGLS K+QE LR
Sbjct: 329 RLLYRDKKDARTRVLVICPTRELAVQVHSVGKALARYTDISFCLCVGGLSLKVQEAELRQ 388
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+VV+TPGR+IDH+RN+ + LD L +LI+DEADR+LE GF E+ E+++ CP+ RQ+
Sbjct: 389 RPDVVVSTPGRLIDHVRNTSTFTLDSLEILIIDEADRILEEGFRDELTEIIKECPRSRQS 448
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+TEDV+EL +LSL KP+R+ D + +L +E +RIR+ ++EA LL++C
Sbjct: 449 LLFSATITEDVNELARLSLDKPVRIKIDETGTTVESLMQEFLRIRKDTPASREAALLAIC 508
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+TF + IIF +KQAAHR +IL GL L A ELHG+L+Q QRL++L+ F++ L
Sbjct: 509 QRTFRGQTIIFFRSKQAAHRARILLGLCGLAAEELHGDLSQEQRLQSLQNFKEGTATHLC 568
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A+RGLDI GVQ+VIN+ P Y+HRVGRTARAG G A+T V D+DR ++K
Sbjct: 569 ATDLASRGLDIKGVQSVINFEMPGSFDIYLHRVGRTARAGNAGRALTLVGDSDRKMVKQA 628
Query: 486 AKRA-GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
K A + K R++ + I + + + +++ ++ ++QEEREE+ +R+AEMEA K +N+I
Sbjct: 629 TKAAPADRFKQRVLPPEVIKEATDRVTELQAEINTVMQEEREEKEIRRAEMEAKKGQNLI 688
Query: 545 AHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579
+K+EI RP+RTWF +E +KK A A A G
Sbjct: 689 EYKQEIAGRPRRTWFQSEGDKKKAKDAGTAQYNSG 723
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/453 (47%), Positives = 309/453 (68%), Gaps = 12/453 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F L+LSRP+L+A LGY+ P+PIQ A IP+AL G+DI A+TGSGKTAAF +P +
Sbjct: 237 NNFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPII 296
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETAL 243
ERL+Y+P ++ + RV++L PTRELA+QV + +K+ ++ + + + VGGL+ + QE L
Sbjct: 297 ERLIYKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLRQQEQIL 356
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
++ PDIV+ATPGR IDH+RNS S ++D + VL++DEADR+LE GF EI+E++ L P +R
Sbjct: 357 KTRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKR 416
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QTMLFSAT+ + +L+ LSL +P+R+ DP + S L +E VRIR+ R+ + + L
Sbjct: 417 QTMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRK-RDHLKPSTLFY 475
Query: 364 LCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L K ++++F K+ HRL+I+ GL + AELHG+L Q QRL+++ F+
Sbjct: 476 LIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKFKSLE 535
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDND 478
V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +V+FV T +
Sbjct: 536 VPVLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVGETSQE 595
Query: 479 RSLLKAIAKRA---GSK--LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
RS++K+ K A G K R V I + +K +E M D V IL EE++E+ + +A
Sbjct: 596 RSIVKSAIKSAQESGEKNLPVGRNVDWNQIEEINKTVESMSDTVKDILDEEKQEKEILQA 655
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
EM+ K EN+I HK+EI +RPKRTWF TE EKK
Sbjct: 656 EMQLKKGENLIKHKQEIESRPKRTWFQTETEKK 688
>gi|223590197|sp|A5DKW3.2|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/494 (45%), Positives = 335/494 (67%), Gaps = 16/494 (3%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGY 145
++SE +Q ++ DED +A F+ + + SF L LSRPLL+ LGY
Sbjct: 163 AESEDEQEQEISENDED---SAAAIAEFYEESK-TTEKITSFQALQLSRPLLKGVGNLGY 218
Query: 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205
+ P+ IQAA IP+A+ G+DI A+TGSGKTAA+ +P +ERL+Y+P + A RV++LTPT
Sbjct: 219 TVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPT 278
Query: 206 RELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
RELA+QV + +K+ QF ++ L VGGL+ + QE L+S PDIVVATPGR+IDH+RNS
Sbjct: 279 RELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNS 338
Query: 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLS 323
S +++L VL++DEADR+LE GF E+ E++ L PK +RQTMLFSAT+ + +LI+LS
Sbjct: 339 PSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQTMLFSATMNTKIQDLIQLS 398
Query: 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL---LSLCSKTFTSKVIIFSGTK 380
L KP+R+ +P + S L +E VRIR+ RE + A+L L L +++++F K
Sbjct: 399 LDKPVRIMVNPPKQAASKLVQEFVRIRK-REHLKPALLYHLLRLVDPQQQNRIVVFVSRK 457
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
+ AHRL+I+ GL +K +ELHG+LTQ QRL++++ FR V LI TD+AARGLDI ++
Sbjct: 458 EMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIE 517
Query: 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL----LKAIAKRAGSKLK 494
VIN+ P+ Y+HRVGRTARAGREG ++TFV ++ DRS+ +K++ ++ K
Sbjct: 518 IVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRSIVKDAIKSLEEQKNGKAV 577
Query: 495 SRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARP 554
SR V + + + + I+E +D + +L+EE+ + + +AEM+ KA N++ H++EI +RP
Sbjct: 578 SRTVDWKKVEELNSIVESKKDTIDEVLEEEKSAKEILQAEMQLEKASNIMKHEKEIHSRP 637
Query: 555 KRTWFVTEKEKKLA 568
KRTWF +E+EKK A
Sbjct: 638 KRTWFQSEQEKKQA 651
>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
Length = 809
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/530 (44%), Positives = 340/530 (64%), Gaps = 30/530 (5%)
Query: 48 AYSESV--SDEHFRRRTTSVDFKITKSLQQ--RSVPIVDNDHSDSEFDQHEDYKPEDEDD 103
AY+E V SD+ + V + K L + P V+ D+E EDY E E++
Sbjct: 110 AYNEEVDLSDDELKHDYMRVKERKGKKLTEAENGGPTVEV-KEDTEDGTKEDYFEEIEEN 168
Query: 104 FSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
A+ SF +++LSRPL++A ALGY PTPIQA+ IP+AL GR
Sbjct: 169 ----------------ANGEIQSFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALMGR 212
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQF 222
DICG A TG+GKTAA+ LPT+ERLLY+P A+ RVL+L PTREL QV+ + +++ QF
Sbjct: 213 DICGCAATGTGKTAAYMLPTIERLLYKPNVAQAVTRVLVLVPTRELGAQVYQVAKQLTQF 272
Query: 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282
T++ + +GGL K QE LR PD+V+ATPGR+IDH++N+ S LD + +LILDEADR
Sbjct: 273 TNVDVGIAIGGLDVKAQEAVLRKNPDVVIATPGRLIDHIKNTPSFSLDSIEILILDEADR 332
Query: 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342
+L+ F+ ++ E++R C RQTMLFSAT+TE+V +L +SL KP+++ + + L
Sbjct: 333 MLDEYFAEQMKEIIRSCSATRQTMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNL 392
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
+E +RIR RE ++EA+L +L +TF ++F TK+ AHRL+IL GL +K ELHG
Sbjct: 393 RQEFIRIREGREADREAILAALVCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHG 452
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462
+LTQAQRLE+L+ F+ + VD LIATDVAARGLDI V+TVIN+ P L Y+HRVGRTA
Sbjct: 453 DLTQAQRLESLKEFKDEQVDILIATDVAARGLDISTVKTVINFVMPATLEHYIHRVGRTA 512
Query: 463 RAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ 522
RAG+ G +V+ + +R ++K I K A S +K+RI+ I K+ + +E ++ +L
Sbjct: 513 RAGKAGVSVSLAGEQERKIVKEIVKNAVSSVKNRIIPLDIIEKYRNKVAALEPEIDRVLA 572
Query: 523 EEREERILRKAEMEATKAENMI------AHKEEIFARPKRTWFVTEKEKK 566
EER E++LR+ E + T AE + A K+++ P R WF T+ E++
Sbjct: 573 EERAEKLLRQTEQQLTSAERKLLGNAGKAAKQDV--PPPREWFQTQHERR 620
>gi|344299490|gb|EGW29843.1| hypothetical protein SPAPADRAFT_157925 [Spathaspora passalidarum
NRRL Y-27907]
Length = 553
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/453 (48%), Positives = 318/453 (70%), Gaps = 14/453 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LSRP+L+ LGY KP+PIQ+A IP+AL G+DI A TGSGKTAA+ +P +E
Sbjct: 41 TFQTLQLSRPVLKGLAQLGYVKPSPIQSASIPIALLGKDIVAGAQTGSGKTAAYMIPIIE 100
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR 244
RLLY+P ++P+ RV++LTPTRELA+QV + +K++QF ++ L VGGL+ + QE L+
Sbjct: 101 RLLYKPSKVPSTRVIVLTPTRELAIQVCDVGKKLSQFINNLNFGLAVGGLNLRQQELQLK 160
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RR 303
S PDIV+ATPGR+IDH+RNS S +D+L VL++DEADR+L+ GF AE+ E++ L PK +R
Sbjct: 161 SRPDIVIATPGRLIDHIRNSPSFSIDNLEVLVIDEADRMLDEGFQAELTEILSLIPKYKR 220
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ + +LI+LSL KP+R+ DP S L +E +RIR+ R+ + A+L
Sbjct: 221 QTLLFSATMNTKIQDLIQLSLQKPVRIMIDPPKTAASKLIQEFIRIRK-RDHLKPALLFQ 279
Query: 364 LCSKTFTSK----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L KT K +++F K+ AH+L+I+ GL +K +ELHG+LTQ QRL+++ F+
Sbjct: 280 LL-KTIDPKQQNRIVVFVSRKEMAHKLRIIIGLLGMKVSELHGSLTQEQRLKSVSDFKNL 338
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-- 477
V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGR+G +++FV ++
Sbjct: 339 VVPVLICTDLASRGLDIPKIEIVINYDMPKTHEVYLHRVGRTARAGRDGVSISFVGESTQ 398
Query: 478 DRSLLKA----IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA 533
DRS++KA IA+ K SR V + +KIIE ++ + +L EE++ + + +A
Sbjct: 399 DRSIVKAAIKSIAEGNSGKAISRNVDWNKVESINKIIESKKEIIEEVLDEEKQAKEILQA 458
Query: 534 EMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
EME TKA N+I H +EI ARPKRTWF +E++KK
Sbjct: 459 EMELTKASNIIKHGKEIQARPKRTWFESERDKK 491
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/503 (44%), Positives = 330/503 (65%), Gaps = 27/503 (5%)
Query: 89 EFDQHEDYKPEDEDDF----SNAGDTKSFFAPADGAS-----FHANSFMELNLSRPLLRA 139
E D E+Y D++D A D F+A + A+ H +F L LSRP+L+
Sbjct: 214 EADMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHT-TFQSLQLSRPVLKG 272
Query: 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199
LGY+KP+PIQ+ACIP+AL G+DI A+TGSGKTAA+ +P +ERLLY+P +I + RV
Sbjct: 273 LSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRV 332
Query: 200 LILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
++L PTRELA+QV + +KI QF ++ L VGGL+ + QE L++ PDIV+ATPGR+I
Sbjct: 333 IVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLI 392
Query: 259 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVD 317
DH+RNS S +D L VL++DEADR+L+ GF AE+ E++ L P+ +RQT+L+SAT+ +
Sbjct: 393 DHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKRQTLLYSATMNTKIQ 452
Query: 318 ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS---KVI 374
+LI+LSL KP+R+ DP L +E VRIR+ R+ + A+L L S +++
Sbjct: 453 DLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRK-RDHLKPALLFQLIKSVDPSQQNRIV 511
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F K++AH+L+I+ GL ++ +ELHG+LTQ QRL ++ F+ V LI TD+AARGL
Sbjct: 512 VFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGL 571
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAG-- 490
DI ++ VINY P+ Y+HRVGRTARAGREG ++TFV ++ DR+++K K
Sbjct: 572 DIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEE 631
Query: 491 -------SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 543
K SR V + + + +KI+E + +L EE++ + + AEME +KA NM
Sbjct: 632 QARNSKQGKAVSRNVDWKEVEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKATNM 691
Query: 544 IAHKEEIFARPKRTWFVTEKEKK 566
I H++EI +RP+RTWF +EK+KK
Sbjct: 692 IKHEKEIQSRPRRTWFESEKDKK 714
>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 643
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/441 (46%), Positives = 306/441 (69%), Gaps = 4/441 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L +PLL+A E + Y PT IQ+ IP AL G+D+ S++TGSGKTAAF +P L+
Sbjct: 191 TWQDLGLIKPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQ 250
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+ YR + LI+TPTRELA Q++ + K+ ++T +R CLV+G + + QE LR
Sbjct: 251 KF-YRSPFTNYSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRG 309
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P++++ATPGR+IDHL+NS S+DLD+L VLI DEAD+LL+LGF A +V C + RQT
Sbjct: 310 NPEVIIATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQT 369
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSATLT +V++LI ++L KP+R+ A+P + L ++++RI+ E +EA LL++
Sbjct: 370 LLFSATLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQ--HEDFREAALLAIA 427
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+K + + IIF TK+ HR+ I+FGL LK ELHG+LTQ QR++A F++ +L+
Sbjct: 428 AKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLM 487
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A+RGLDI GV+ VIN+ P ++T Y+HRVGRTARAG EG ++T D + LK +
Sbjct: 488 ATDLASRGLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKM 547
Query: 486 AKRAGSKLKSRI-VAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
K K+ ++ ++ +++ K+ + I+ +E +V +L+EE+ ER LRKAEME KAENMI
Sbjct: 548 LKENKDKMMEKVSLSVETLQKYKEKIQNVEREVVKVLEEEQAERQLRKAEMELQKAENMI 607
Query: 545 AHKEEIFARPKRTWFVTEKEK 565
HK+EI +PK+TWF T E+
Sbjct: 608 KHKDEIMNKPKKTWFQTNHER 628
>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/454 (48%), Positives = 317/454 (69%), Gaps = 12/454 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LSRPLL+ LGY+ P+ IQAA IP+A+ G+DI A+TGSGKTAA+ +P +E
Sbjct: 199 SFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIE 258
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR 244
RL+Y+P + A RV++LTPTRELA+QV + +K+ QF ++ L VGGL+ + QE L+
Sbjct: 259 RLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLK 318
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RR 303
S PDIVVATPGR+IDH+RNS S +++L VL++DEADR+LE GF E+ E++ L PK +R
Sbjct: 319 SRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKR 378
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL-- 361
QTMLFSAT+ + +LI+LSL KP+R+ +P + S L +E VRIR+ RE + A+L
Sbjct: 379 QTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRK-REHLKPALLYH 437
Query: 362 -LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L L +++++F K+ AHRL+I+ GL +K ELHG+LTQ QRL++++ FR
Sbjct: 438 LLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLA 497
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDND 478
V LI TD+AARGLDI ++ VIN+ P+ Y+HRVGRTARAGREG ++TFV ++ D
Sbjct: 498 VPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQD 557
Query: 479 RSL----LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
RS+ +K++ ++ K SR V + + + + I+E +D + +L+EE+ + + +AE
Sbjct: 558 RSIVKDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDTIDEVLEEEKLAKEILQAE 617
Query: 535 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
M+ KA N++ H++EI +RPKRTWF +E+EKK A
Sbjct: 618 MQLEKASNIMKHEKEIHSRPKRTWFQSEQEKKQA 651
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/458 (46%), Positives = 315/458 (68%), Gaps = 16/458 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L+LSRP+L+ LGY+KP+PIQ+A IP+AL G+D+ A+TGSGKTAAF +P +E
Sbjct: 240 TFNSLSLSRPVLKGLAHLGYTKPSPIQSATIPVALQGKDVIAGAVTGSGKTAAFMIPIIE 299
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR 244
RLL++P ++ RV++LTPTRELA+Q+ + +KI QF + + L VGGL+ + QE AL+
Sbjct: 300 RLLFKPSKVAMTRVIVLTPTRELAIQISDVAKKIGQFVSGLTFGLAVGGLNLRQQEQALK 359
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDIV+ATPGR IDH+RNS S ++D + +L+LDEADR+LE GF E+ E++ + P +RQ
Sbjct: 360 ARPDIVIATPGRFIDHIRNSASFNVDSVEILVLDEADRMLEEGFQDELKEIMTMLPSKRQ 419
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT+ + L+ LSL +P+R+ DP + S LT+E VRIR+ R+ + A+L +L
Sbjct: 420 NLLFSATMNSKIKSLVSLSLRRPVRIMIDPPKQAASKLTQEFVRIRK-RDNLKPALLFNL 478
Query: 365 CSKTFTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K ++ ++++F K+ AHRL+I+ GL + AELHG+LTQ QRLE++ F+ V
Sbjct: 479 IRKLDSNAQKRIVVFVARKETAHRLRIILGLLGMAVAELHGSLTQEQRLESVTRFKSLDV 538
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDR 479
LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG +VT V + +R
Sbjct: 539 PVLICTDLASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTARAGREGRSVTLVGESSQER 598
Query: 480 SLLKAIAK---------RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
++++A K G + R V + + +K++E+ D + A+L EE+EE+ +
Sbjct: 599 AIVRAAIKSVEETNQISNNGGRALGRNVDWNQVEETNKLVEKSADTIEAVLVEEKEEKEI 658
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLA 568
+AEM+ K ENM+ HK+EI ARP+RTWF TE EKK A
Sbjct: 659 LRAEMQLKKGENMLKHKKEIQARPRRTWFQTETEKKNA 696
>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/479 (45%), Positives = 321/479 (67%), Gaps = 12/479 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
++E+D +A F+ A+ H SF L+L+RP+L+ +LGY+KP+PIQ+A IP+
Sbjct: 211 DEENDEDSAEAIAEFYEKAESDQAH-KSFQSLDLARPVLKGLASLGYTKPSPIQSASIPI 269
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
AL G+DI A+TGSGKTAA+ +P +ERLLY+ ++ + RV+ILTPTRELA+QV + +K
Sbjct: 270 ALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKSSKVASTRVVILTPTRELAIQVCDVGKK 329
Query: 219 IAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
I ++ ++ L VGGL+ + QE L++ PDIVVATPGR+IDH+RNS S LD L +L++
Sbjct: 330 IGRYVNNLTFGLAVGGLNLRQQEQQLKTRPDIVVATPGRLIDHIRNSASFSLDALEILVM 389
Query: 278 DEADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
DEADR+LE GF E+ E++ L PK +RQTMLFSAT+ + +LI+LSL KP+R+ DP
Sbjct: 390 DEADRMLEEGFQVELTEILTLIPKHKRQTMLFSATMNTKIQDLIQLSLNKPVRIMIDPPK 449
Query: 337 KRPSTLTEEVVRIRRMREVNQEAV--LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA 394
+ L +E VRIR+ E+ + LL + S++++F K+ AHRL+I+ GL
Sbjct: 450 AAANKLVQEFVRIRKKDEMKPALLYYLLKSVDPSQQSRIVVFVSRKETAHRLRIILGLLG 509
Query: 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454
+K +ELHG+LTQ QRL + F+ V LI TD+AARGLDI ++ VINY P+ Y
Sbjct: 510 MKVSELHGSLTQEQRLNNVNDFKNLTVPVLICTDLAARGLDIPKIEMVINYDMPKSHEIY 569
Query: 455 VHRVGRTARAGREGYAVTFVTD--NDRSLLKAIAK-----RAGSKLKSRIVAEQSITKWS 507
+HRVGRTARAGREG ++TFV + DR+++KA K ++ K SR V + +
Sbjct: 570 LHRVGRTARAGREGRSITFVGEAAADRNIVKAAMKSLEESQSQQKAVSRNVDWPKVEVYH 629
Query: 508 KIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
++++ D V +L+EE+ + + AEME KA+N+I + ++I +RP+RTWF +E EKK
Sbjct: 630 NVVQEKNDTVQEVLEEEKSAKEVLAAEMELAKADNLIKYGKDIQSRPRRTWFESESEKK 688
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/525 (43%), Positives = 335/525 (63%), Gaps = 38/525 (7%)
Query: 113 FFAPA----DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
+FAP D +F LNLSRP+L+ +LG++KP+PIQ+A IP+AL G+DI
Sbjct: 198 YFAPEEEAEDAKKQTHTTFNTLNLSRPVLKGLSSLGFTKPSPIQSATIPIALLGKDIVAG 257
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRC 227
A+TGSGKTAAF +P +ERLLY+P ++ + RV+ILTPTRELA+Q+ + +KI F + +
Sbjct: 258 AVTGSGKTAAFMIPIIERLLYKPAKVASTRVVILTPTRELAIQISDVAKKIGHFVNGLTF 317
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 318 GLAVGGLNLRQQEQILKSRPDIVIATPGRFIDHVRNSASFSVDRVEILVLDEADRMLEEG 377
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ E++ L P RRQ +LFSAT+ + +L+ LSL KP+R+ DP + L +E V
Sbjct: 378 FQDELSEIMTLLPTRRQNLLFSATMNSKIKQLVSLSLKKPVRIMIDPPKQAADRLVQEFV 437
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L +L K T ++++F K+ AHRL+I+ GL + AELHG+L
Sbjct: 438 RIRK-RDHLKPALLYNLIRKLDSTGQKRIVVFVSRKEVAHRLRIILGLLGMGVAELHGSL 496
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARA
Sbjct: 497 SQEQRLDSVNKFKSLDVPVLICTDLASRGLDIPKIEIVINYDMPKSYEIYLHRVGRTARA 556
Query: 465 GREGYAVTFV--TDNDRSLLKAIAKRAGSKLK-----------SRIVAEQSITKWSKIIE 511
GREG +VTFV + +R++++ K K R V + + +K++E
Sbjct: 557 GREGRSVTFVGESSQERAIVRDAIKSVEDTNKVPKNGHTGRALGRNVDWNQVEETNKVVE 616
Query: 512 QMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 571
+ D V IL EE++E+ + +AEM+ K +NM+ +K+EI +RP+RTWF TE EKK +
Sbjct: 617 KNIDTVDDILVEEKQEKEIIRAEMQLKKGQNMLKYKDEIQSRPRRTWFQTESEKKNSKVI 676
Query: 572 DKASIEKGKGSGNEVTSAQQAEDLKIKEKRKRERE-KNLPRKERR 615
++ K K + N +KRKRE E +++PR ++
Sbjct: 677 --GALAKTKKTANS-------------KKRKREEELESMPRSYKK 706
>gi|427792819|gb|JAA61861.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 696
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/468 (48%), Positives = 317/468 (67%), Gaps = 10/468 (2%)
Query: 99 EDEDDFSNAGD-TKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
E+E+D A D T++FF + SF ++NLSRPLL+A A+ + PTPIQ++ IP
Sbjct: 106 ENEED--EAEDVTQAFFGDEN------TSFQQMNLSRPLLKALTAMNFVYPTPIQSSTIP 157
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217
+AL GRDI A TG+GKTAAF LP LERLL+RPK+ RVL++ PTRELAVQV+ +
Sbjct: 158 MALLGRDIYACAATGTGKTAAFMLPVLERLLFRPKQDVVTRVLVIVPTRELAVQVYQVSL 217
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
++AQFT+I L GGL K QE ALR +PDI++ATPGR+IDHL N+ DL ++ VLIL
Sbjct: 218 QLAQFTNIMITLSAGGLDLKAQEAALRKLPDIIIATPGRLIDHLENTPGFDLRNIEVLIL 277
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEAD++L+ F++++ E++R C RQTMLFSAT+TE+V +L +SL KP++L + +
Sbjct: 278 DEADKMLDETFASQMKEIIRQCAPTRQTMLFSATMTEEVKDLAAVSLQKPVKLFLNNNTD 337
Query: 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
L +E VRIR RE ++EA+L +L +TF I+F TK+ AHRL++L GL +
Sbjct: 338 VALNLRQEFVRIRPQREGDREAILAALVCRTFHDHTIVFVQTKKLAHRLRVLLGLLGARV 397
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHGNL QAQRLEAL F++ VD L+ TD+ ARGLDI V+TVIN+ P + YVHR
Sbjct: 398 DELHGNLNQAQRLEALHRFKEMEVDVLVTTDLVARGLDIKDVKTVINFTLPHTVQHYVHR 457
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
VGRTARAG+ G +V+ V + +R LLK I K+A + +K RI+ + + + I +E ++
Sbjct: 458 VGRTARAGKSGRSVSMVGEQERKLLKEIVKQARTPVKQRILPPDVVAHFREKIAGLEQEI 517
Query: 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ILQEE+ E+ L E E KA ++ +K+ P+R+WF T KEK
Sbjct: 518 ESILQEEKAEKELGVMEKEVEKASELV-NKKAAANEPQRSWFQTPKEK 564
>gi|383864023|ref|XP_003707479.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Megachile
rotundata]
Length = 741
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/450 (50%), Positives = 314/450 (69%), Gaps = 5/450 (1%)
Query: 114 FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS 173
F + HA +F ++NLSRPLL+A + + PTPIQAA IP+AL GRDICG A TG+
Sbjct: 147 FEEYSNSETHA-TFYQMNLSRPLLKAITTMNFVHPTPIQAATIPVALMGRDICGCAATGT 205
Query: 174 GKTAAFALPTLERLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
GKTAA+ LPTLERLLYRP PAI RVL+L PTREL VQV+ + ++++QFT + L VG
Sbjct: 206 GKTAAYMLPTLERLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTVEVGLSVG 265
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL K+QET LR PDIV+ATPGR+IDHL+N+ + LD + VLILDEADR+L+ F+ ++
Sbjct: 266 GLDVKVQETVLRKNPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQM 325
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
+V+ C + RQTMLFSAT+TE+V +L +SL KP+++ D + L +E +RIR+
Sbjct: 326 KYIVQQCSRTRQTMLFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKE 385
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
RE ++EA+L +L +TF ++F TK+ AHRL IL GL +K ELHGNLTQ QRLE
Sbjct: 386 REGDREAILAALVCRTFHDHTMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLEN 445
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ + +D L+ATDVAARGLDI GV+TVIN+ P + Y+HRVGRTARAGR G +V+
Sbjct: 446 LRKFKNEEIDILLATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVS 505
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRK 532
+ +RSL+K I K A + +K+RI+ I K++K ++ +E V IL+EER ER L K
Sbjct: 506 LAGEQERSLVKDIIKNAKNPVKNRIIPPDIIEKYNKKLKSLEPDVEKILEEERNERELAK 565
Query: 533 AEMEATKAENMIAHKEEIFARPKRTWFVTE 562
E +A +AE ++ + + +R+WF T+
Sbjct: 566 IENQANRAEKLLKDENK---STQRSWFQTQ 592
>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/441 (50%), Positives = 305/441 (69%), Gaps = 5/441 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLE
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D L
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVL 457
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A S +K+RI+ + I K+ K + +E ++ IL EE+ ER L K E + +K E +
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQNILDEEQAERQLAKTEQQLSKTERKL 577
Query: 545 AHKEEIFARPKRTWFVTEKEK 565
+ KR WF T++++
Sbjct: 578 LGQ----TNDKRGWFQTKQQR 594
>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
Length = 785
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/441 (50%), Positives = 305/441 (69%), Gaps = 5/441 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++NLSRPL+RA LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLE
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 186 RLLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLLYRP AI RVL+L PTREL QV+ + +++ QFT I L +GGL K QE LR
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLR 277
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDIV+ATPGR+IDH++N+ S LD + VLILDEADR+L+ F+ ++ E++ C K RQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT++E V +L +SL KP+++ + + + L +E +RIR +E ++E +L SL
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+TF ++F TK+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D L
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVL 457
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI+GV+TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKD 517
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I K A S +K+RI+ + I K+ K + +E ++ IL EE+ ER L K E + +K E +
Sbjct: 518 IIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQNILDEEQAERQLAKTEQQLSKTERKL 577
Query: 545 AHKEEIFARPKRTWFVTEKEK 565
+ KR WF T++++
Sbjct: 578 LGQ----TNDKRGWFQTKQQR 594
>gi|444731361|gb|ELW71716.1| putative ATP-dependent RNA helicase DDX27 [Tupaia chinensis]
Length = 735
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/457 (46%), Positives = 304/457 (66%), Gaps = 26/457 (5%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 172 GFFE--DASEYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 229
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+ RVL+L PTREL +QVH++ +++AQF I CL
Sbjct: 230 TGT----------------------VTRVLVLVPTRELGIQVHAVTKQLAQFCSITTCLA 267
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGGL K QE ALR+ PD+++ATPGR+IDHL N S L ++ VLILDEADR+L+ F
Sbjct: 268 VGGLDVKSQEAALRAAPDVLIATPGRLIDHLHNCPSFHLSNVEVLILDEADRMLDEYFEE 327
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 328 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 387
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ I+ GL L+ ELHGNL+Q QRL
Sbjct: 388 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHIVLGLMGLQVGELHGNLSQTQRL 447
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 448 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 507
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 508 VSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 567
Query: 531 RKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
+++E + A+ ++ KE P+R+WF T++E+K
Sbjct: 568 QQSEAQINTAKRLLEKGKEARDQEPERSWFQTKEERK 604
>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
98AG31]
Length = 573
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/506 (44%), Positives = 328/506 (64%), Gaps = 33/506 (6%)
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA-IRVLI 201
+ + PTPIQ IPLAL G+D+ S++TGSGKT + +P ERL++R K+ RV+I
Sbjct: 1 MSVTTPTPIQRQTIPLALLGKDLVCSSMTGSGKTLGYLVPIFERLMWRDKKGGGKTRVMI 60
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
LTPTRELAVQV+ + + +A++TD+ L VGG++ + QE LR P+IVV TPGR+IDH+
Sbjct: 61 LTPTRELAVQVYQVGKSLARYTDLTFSLCVGGMNLRTQEAELRERPEIVVGTPGRVIDHV 120
Query: 262 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
RN+ LD L +L++DEADR+LE GF E+ E++ CP+ RQTMLFSAT++E V +L +
Sbjct: 121 RNTRGFSLDTLEILVIDEADRILEEGFRDELEEIISNCPRSRQTMLFSATVSESVADLAR 180
Query: 322 LSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMREVNQEAVLLSLCSKTFTSK 372
LSL KP+R+ DP + LT+E +R+R + ++ +EA+L++LC + SK
Sbjct: 181 LSLEKPIRIKIDPPKSTATGLTQEFLRVRDDQLLKKGAGVADIQREAILVTLCKASSFSK 240
Query: 373 --VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430
IIF +K AHR+K+ F L LKAAELHGNLTQ QR+ +L+ F+ V +L+ATD+A
Sbjct: 241 GRTIIFFRSKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMSSLQDFKDGKVSYLLATDLA 300
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490
+RGLDI GV+ VINY P Y+HR+GRTARAG++G A+T V ++DR L+K +
Sbjct: 301 SRGLDIKGVERVINYETPNQYDVYLHRIGRTARAGKKGSALTLVGESDRKLVKEARRNCQ 360
Query: 491 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 550
+K R + + + SK + +++ +A IL++E+EE++L+K EME K +N+I H +EI
Sbjct: 361 GTIKQRKIDPKIVQDVSKELARLQSSIATILEDEQEEKVLKKTEMELKKGQNLIEHDDEI 420
Query: 551 FARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKRKREREK--N 608
+RP RTWF +E +KK K K G TSA A K K+ + +R+K
Sbjct: 421 KSRPARTWFQSESDKK-----------KSKDVG---TSAHTANFTKTKDSKGTKRDKFDG 466
Query: 609 LPRKERRKLEAAREMLEDEDQVDKLQ 634
L R ++R R+M +ED ++LQ
Sbjct: 467 LSRAQKR-----RKMANEEDAQERLQ 487
>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660268|sp|Q6CJV1.1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
Length = 748
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/469 (46%), Positives = 315/469 (67%), Gaps = 16/469 (3%)
Query: 113 FFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
F+AP AD +F L+LSRP+L+ +LGY+ P+PIQ+A IP+AL G+DI
Sbjct: 217 FYAPEEESADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAG 276
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRC 227
A+TGSGKTAAF +P +ERLLY+P I + RV++LTPTRELA+QV + + I +F + +
Sbjct: 277 AVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTF 336
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGL+ + QE AL++ PDIV+ATPGR IDHLRNS S +D + +L++DEADR+LE G
Sbjct: 337 GLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG 396
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ E++ L P +RQT+LFSAT+ + +LI LSL KP+R+ DP + LT+E +
Sbjct: 397 FQEELQEIMSLIPSKRQTLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFI 456
Query: 348 RIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
RIR+ R+ + A+L L K T ++++F K+ AH+L+I+ GL ++ ELHG+L
Sbjct: 457 RIRK-RDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSL 515
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QRL+++ F+ V LI TD+A+RGLDI ++ VIN+ P+ Y+HRVGRTARA
Sbjct: 516 TQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARA 575
Query: 465 GREGYAVTFV--TDNDRSLLKAIAKRA-----GSKLKSRIVAEQSITKWSKIIEQMEDQV 517
GREG +VTFV + DRS++++ + K SR V + + + +I D V
Sbjct: 576 GREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVV 635
Query: 518 AAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
I++EE++E+ + +AEME K ENM+ HKEEI ARP+RTWF +E EKK
Sbjct: 636 EEIIEEEKQEKEILRAEMELRKGENMLKHKEEISARPRRTWFQSEAEKK 684
>gi|448091961|ref|XP_004197457.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|448096550|ref|XP_004198488.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359378879|emb|CCE85138.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359379910|emb|CCE84107.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
Length = 719
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/477 (47%), Positives = 327/477 (68%), Gaps = 30/477 (6%)
Query: 116 PADGASFHAN-----------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
P + A+F+A+ +F L LSRP+LRA LGY KP+ IQ++ IP+AL G+D
Sbjct: 186 PEEMANFYASESAEVKQQSHETFQSLQLSRPILRALGQLGYVKPSAIQSSAIPIALLGKD 245
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-T 223
I A+TGSGKTAA+ +P +ERLLY+P +I AIRV++LTPTRELA+QVH + +KI +F
Sbjct: 246 IVAGAVTGSGKTAAYMIPIIERLLYKPSKISAIRVIVLTPTRELAIQVHDVGKKIGRFVN 305
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
++ L VGGL+ + QE L+S PDIV+ATPGR+IDH+RNS S +D L ++++DEADR+
Sbjct: 306 NLNFGLAVGGLNLRQQEQQLKSRPDIVIATPGRLIDHIRNSPSFSIDTLEIMVIDEADRM 365
Query: 284 LELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342
L+ GF AE+ E++ L PK +RQT+LFSAT+ + +LI+LSL +P+R+ DP + L
Sbjct: 366 LDEGFQAELTEILSLVPKQKRQTLLFSATMNTKIQDLIQLSLDRPVRIMIDPPKATTAKL 425
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTS---KVIIFSGTKQAAHRLKILFGLAALKAAE 399
+E VRIR+ R+ + A+L L + +S ++++F TK AHRL++L G+ LK +E
Sbjct: 426 VQEFVRIRK-RDHLKPALLFELLNTIDSSNQDRIVVFVSTKGTAHRLRVLLGVLGLKVSE 484
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
LHG LTQ QRL+ + F++ V LI TD+AARGLDI ++ VINY P+ Y+HRVG
Sbjct: 485 LHGALTQEQRLKNVTDFKELKVSVLICTDLAARGLDIPKIEFVINYDMPKTHEIYLHRVG 544
Query: 460 RTARAGREGYAVTFV--TDNDRSLLKAIAK------RAGSKLKSRIVAEQ----SITKWS 507
RTARAGREG ++T V + +DRS++K K + G+K K +IV+ + +
Sbjct: 545 RTARAGREGRSITLVGESSHDRSIVKDALKSVENEPQNGAK-KGKIVSRNIDWPRVEDIN 603
Query: 508 KIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
K+I+ ED + IL+EE+E + + +AEME +KA+N+I H++EI ARPKRTWF + K+
Sbjct: 604 KVIDNKEDTIQEILEEEKEAKEMLQAEMELSKADNLIKHRKEIMARPKRTWFESSKD 660
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 289/427 (67%), Gaps = 13/427 (3%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD------GASFHANSFMEL 130
+VP D+ SD + E ED+D+ + FFAP D S SF L
Sbjct: 248 AVPHPDDLASDEDVSGSES---EDDDEIRKQNE---FFAPEDQVTESKSTSGAPASFQNL 301
Query: 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 190
+LSRP+LR ++G+S PTPIQ IP+AL G+D+ G A+TGSGKT AF +P LERLLYR
Sbjct: 302 SLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILERLLYR 361
Query: 191 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 250
P+++P RV IL PTRELAVQ +++ K+A FTDI C +VGG S + QE L+ PD++
Sbjct: 362 PRKVPTSRVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVI 421
Query: 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310
+ATPGR IDH+RNS S +D L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSA
Sbjct: 422 IATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQTMLFSA 481
Query: 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370
T+T VD+LI++ L KP+RL D + TL +E VR+R RE + L+ LC ++
Sbjct: 482 TMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYS 541
Query: 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430
++VI+F K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR V +L+ATD+A
Sbjct: 542 NRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVSYLLATDLA 601
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490
+RGLDI GV+TVINY P+ Y+HRVGRTARAGR G A T + DR ++K A +AG
Sbjct: 602 SRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKE-AVKAG 660
Query: 491 SKLKSRI 497
++I
Sbjct: 661 RAQGAKI 667
>gi|358377688|gb|EHK15371.1| hypothetical protein TRIVIDRAFT_196232 [Trichoderma virens Gv29-8]
Length = 1380
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 299/469 (63%), Gaps = 54/469 (11%)
Query: 112 SFFAPAD----GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+FFAP + G +SF ++LSRP+LR +G+SKPTPIQA IP+AL G+D+ G
Sbjct: 226 AFFAPEEKPKPGQKVDVSSFQAMSLSRPILRGITTVGFSKPTPIQAKTIPIALMGKDLVG 285
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A+TGSGKTAAF LP LERLLYRPK+IP RV+ILTPTRELA+Q H++ K+A TDI+
Sbjct: 286 GAVTGSGKTAAFVLPILERLLYRPKKIPTTRVVILTPTRELAIQCHAVATKLAAHTDIKF 345
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
L VGGLS K QE LR PD+++ATPGR IDH+RNS S +D + +L+LDEADR+LE G
Sbjct: 346 TLAVGGLSLKAQEVELRLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDG 405
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F+ E++E++ PK RQTMLFSAT+T VD LIK+ L KP+R+ D K TLT+E V
Sbjct: 406 FADELNEILTTLPKSRQTMLFSATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLTQEFV 465
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+R RE + L
Sbjct: 466 RLRPGREEKRMGYL---------------------------------------------- 479
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
R+ ++E FR V +L+ATD+A+RGLDI GV TVINY P+ + YVHRVGRTARAGR
Sbjct: 480 -RIASVESFRDGKVCYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRH 538
Query: 468 GYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
G +VT + DR ++KA K GSK+ SR++ + KW I++M+D++A I +EE
Sbjct: 539 GTSVTLAAEPDRKVVKAAVKAGKAQGSKIISRVIEVKDADKWQAEIDEMDDEIAEIEKEE 598
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
+EER L + EM+ K EN+I H+ EI +RPKRTWF T+++KK A +A +
Sbjct: 599 KEERQLAQVEMQIKKGENIIEHEAEIKSRPKRTWFETQQDKKNAKQAGR 647
>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Komagataella pastoris CBS 7435]
Length = 761
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/452 (48%), Positives = 311/452 (68%), Gaps = 13/452 (2%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
S H +F L+LSRP+L+ LGY+KP+PIQ+A IP+ L G+DI A TGSGKTAA+
Sbjct: 244 SVHV-TFQSLSLSRPVLKGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYM 302
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQ 239
+P +ERLL++P +I A RV++LTPTRELA+QV+ + +KI+QF + I L VGGL+ + Q
Sbjct: 303 IPIIERLLFKPSKISATRVVVLTPTRELAIQVNDVGKKISQFVNGIEFGLAVGGLNLRKQ 362
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E LR PDIV+ATPGR IDH+RNS S ++ + +L++DEADR+LE GF E+ E++ L
Sbjct: 363 EQELRKRPDIVIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLL 422
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P ++QTMLFSAT+ + +LI+LSL KP+R+ DP + S L +E VR+R+ E+ + A
Sbjct: 423 PGKKQTMLFSATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEM-KPA 481
Query: 360 VLLSLCSKTFTS---KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+L + +K S ++++F K AH+L+I+ GL LK +ELHG+LTQ QRL+++ F
Sbjct: 482 LLFDILTKVNPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDF 541
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ V LI TD+A+RGLDI ++ VINY P+ Y+HRVGRTARAGREG ++TFV++
Sbjct: 542 KNLTVPILICTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSE 601
Query: 477 ND------RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
++ R +K IA A ++ R V SI K ++IE+ + + IL EE+EE+
Sbjct: 602 SNQDRAIVREAMKGIAT-AKNRALGRNVDWDSIEKIHQLIEEKAETIGDILSEEKEEKQF 660
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWFVTE 562
+AEME K EN++ H EEI +RPKRTWF +E
Sbjct: 661 LRAEMEVRKGENILHHGEEIMSRPKRTWFQSE 692
>gi|339250128|ref|XP_003374049.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 693
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/451 (46%), Positives = 309/451 (68%), Gaps = 9/451 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E+NLSR L +A ++ Y PTPIQ+ACIP+AL G+DIC A TG+GKT A+ +P LE
Sbjct: 153 TFEEMNLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPILE 212
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL++P RVL++ PTRELA+QV+ +A++T I L GG+ K QE ALR
Sbjct: 213 RLLFKPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAALRL 272
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDHL NS +L+ + +L+LDEADR+L+ F ++ E++RLC RQ
Sbjct: 273 NPDVVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPTRQA 332
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T+ V +L +SL KP++L + + + L ++ VRIR+ RE ++EA L +L
Sbjct: 333 MLFSATMTDKVKDLASVSLKKPVKLFVNENTEMALNLRQQFVRIRKERECSREASLAALL 392
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++FTSKV++F+GTK+ HRL++L GL ++ AELHGNL+QAQR++ALE F+K VD L+
Sbjct: 393 KRSFTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFKKGVVDVLV 452
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARG+D+ GV+TVINY P YVHRVGRTARAGR G AV+FV+++DR L+K I
Sbjct: 453 ATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSEDDRKLVKEI 512
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
K + +K RI+ + ++ ++I+++ ++ I++EE++ER L AE + +A+ +
Sbjct: 513 VKHCPTSIKRRILNKDAVESCQRMIDELLPEIDRIVEEEKQERQLSIAEKQIAQAKAKLE 572
Query: 546 H---------KEEIFARPKRTWFVTEKEKKL 567
+ + P+R WF T +KL
Sbjct: 573 NDHHQAGATTSSKANNNPQRVWFQTPVAQKL 603
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/531 (43%), Positives = 341/531 (64%), Gaps = 25/531 (4%)
Query: 82 DNDHSDSEFD---QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLR 138
++D SD E D E +PED + + +F+ + S SF L LSRP+L+
Sbjct: 75 ESDESDQEVDIPETKEAVQPEDTPE-----EIANFYEQSTHQSH--TSFQTLQLSRPVLK 127
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY+P + +
Sbjct: 128 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPST--STK 185
Query: 199 VLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM 257
V+ILTPTRELA+QV+ +K++ ++ L VGGL+ + QE L++ PDIV+ATPGR+
Sbjct: 186 VIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRL 245
Query: 258 IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDV 316
IDH+RNS S + D+ VL++DEADR+LE GF E+ E++ L PK +RQT+LFSAT+ +
Sbjct: 246 IDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKRQTLLFSATMNTRI 305
Query: 317 DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIF 376
+LI+LSL KP+R+ DP + S L ++ VRIR+ R+ + A+L L K +++V++F
Sbjct: 306 QDLIQLSLQKPVRIMIDPPKQVASKLLQQFVRIRK-RDHLKPALLYQLL-KGVSTRVVVF 363
Query: 377 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436
K+ AH+L+I+ GL LK +ELHG L+Q QRL+ ++ F+ V LI TD+AARGLDI
Sbjct: 364 VARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPVLICTDLAARGLDI 423
Query: 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKA--IAKRAGSK 492
++ VINY P+ Y+HRVGRTARAGR+G ++TFV + +R+++KA + + +K
Sbjct: 424 PKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKAAIVNGKGVAK 483
Query: 493 LKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFA 552
AEQ+ SKII E + +LQEE+E + L +AEME TKA N+I H++EI +
Sbjct: 484 TVDWNQAEQT----SKIISSKESVIDEVLQEEKEAKELLRAEMELTKASNLIKHEQEIHS 539
Query: 553 RPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAED-LKIKEKRK 602
RPKRTWF E + L K + +K K + + + D +KI K+K
Sbjct: 540 RPKRTWFKGEVMEHLTKHGKKVNAKKRKANEEGRSYKKTKTDRMKISNKKK 590
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/472 (46%), Positives = 316/472 (66%), Gaps = 20/472 (4%)
Query: 113 FFAP-ADG----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
F+AP A+G H N F L+LSRP+L+ +LGY KP+PIQ+A IP+AL G+DI
Sbjct: 210 FYAPEAEGDDAKKQVHGN-FNTLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIA 268
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIR 226
A+TGSGKTAAF +P +ERLLY+P +I A RV++L PTRELA+QV + ++IA+F I
Sbjct: 269 GAVTGSGKTAAFMIPIIERLLYKPAKIAATRVIVLLPTRELAIQVADVGKQIARFLPGIT 328
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
L VGGL+ + QE L++ PDIV+ATPGR IDH+RNS S ++D + +L++DEADR+LE
Sbjct: 329 FGLAVGGLNLRQQEQLLKTRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEE 388
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
GF E+ E++ L P RQ +LFSAT+ + L+ LSL +P+R+ DP + + LT+E
Sbjct: 389 GFQDELSEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKRPVRIMIDPPKQAAARLTQEF 448
Query: 347 VRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
VRIR+ R+ + ++L +L K ++++F K+ AHRL+I+ GL + ELHG+
Sbjct: 449 VRIRK-RDHLKPSLLFNLIRKLDPMGQKRIVVFVARKETAHRLRIVMGLLGMGVGELHGS 507
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ QRL+++ F+ V L+ TD+A+RGLDI ++ V+NY P+ Y+HRVGRTAR
Sbjct: 508 LTQEQRLDSVNKFKNLEVPVLVCTDLASRGLDIPKIEVVVNYDMPKSYEIYLHRVGRTAR 567
Query: 464 AGREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQSITKWSKIIEQME 514
AGREG +VT V + DRS+++A K K RIV I + +K++E M
Sbjct: 568 AGREGRSVTLVGESSQDRSIVRAAIKSVEEDKSLTQGKALGRIVDWVQIEETNKLVESMS 627
Query: 515 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ + IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF +E +KK
Sbjct: 628 NTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKK 679
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 318/484 (65%), Gaps = 20/484 (4%)
Query: 100 DEDDFSNAGDTKSFFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAAC 155
+EDD A F+AP + ++F L+LSRP+L+ LGY P+PIQ+A
Sbjct: 189 EEDDSEEA--KADFYAPETEGNEAKKQMYDNFNSLSLSRPVLKGLANLGYVMPSPIQSAT 246
Query: 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215
IP+AL G+DI A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV +
Sbjct: 247 IPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELALQVADV 306
Query: 216 IEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274
++IA+F I L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +
Sbjct: 307 GKQIARFVPSITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEI 366
Query: 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334
L++DEADR+LE GF E++E++ L P RQ +LFSAT+ + L+ LSL +P+R+ DP
Sbjct: 367 LVMDEADRMLEEGFQDELNEIMGLLPSSRQNLLFSATMNSKIKSLVSLSLKRPVRIMIDP 426
Query: 335 SAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFG 391
K + LT+E VRIR+ R+ + A++ +L K ++++F K++AHRL+I+ G
Sbjct: 427 PKKAATKLTQEFVRIRK-RDHLKPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMG 485
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
L + ELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+
Sbjct: 486 LLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSH 545
Query: 452 TSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQS 502
Y+HRVGRTARAGREG +VTFV + DRS+++A K K R V
Sbjct: 546 EVYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQ 605
Query: 503 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE 562
+ K +K++E M D + IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF E
Sbjct: 606 VEKTNKLVESMGDTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQNE 665
Query: 563 KEKK 566
+KK
Sbjct: 666 SDKK 669
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 318/484 (65%), Gaps = 20/484 (4%)
Query: 100 DEDDFSNAGDTKSFFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAAC 155
+EDD A F+AP + ++F L+LSRP+L+ LGY P+PIQ+A
Sbjct: 210 EEDDSEEA--KADFYAPETEGNEAKKQMYDNFNSLSLSRPVLKGLANLGYVTPSPIQSAT 267
Query: 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215
IP+AL G+DI A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA+QV +
Sbjct: 268 IPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELALQVADV 327
Query: 216 IEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274
++IA+F I L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S ++D + +
Sbjct: 328 GKQIARFVPSITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEI 387
Query: 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334
L++DEADR+LE GF E++E++ L P RQ +LFSAT+ + L+ LSL +P+R+ DP
Sbjct: 388 LVMDEADRMLEEGFQDELNEIMGLLPSSRQNLLFSATMNSKIKSLVSLSLKRPVRIMIDP 447
Query: 335 SAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFG 391
K + LT+E VRIR+ R+ + A++ +L K ++++F K++AHRL+I+ G
Sbjct: 448 PKKAATKLTQEFVRIRK-RDHLKPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMG 506
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
L + ELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY P+
Sbjct: 507 LLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSH 566
Query: 452 TSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKAIAKRA-------GSKLKSRIVAEQS 502
Y+HRVGRTARAGREG +VTFV + DRS+++A K K R V
Sbjct: 567 EVYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQ 626
Query: 503 ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE 562
+ K +K++E M D + IL EE+EE+ + +AEM+ K ENM+ HK+EI ARP+RTWF E
Sbjct: 627 VEKTNKLVESMGDTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQNE 686
Query: 563 KEKK 566
+KK
Sbjct: 687 SDKK 690
>gi|406605499|emb|CCH43143.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 740
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/489 (45%), Positives = 330/489 (67%), Gaps = 17/489 (3%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAP---ADGASFHAN-SFMELNLSRPLLRACEALGYS 146
D + PEDE+D + D F+AP AD A + +F L+LSRP+L+ LGY
Sbjct: 195 DDGAESSPEDEED--SPEDMAKFYAPTEEADQAKKQIHKTFQSLDLSRPILKGLSTLGYQ 252
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206
P+PIQ+A IP+AL G+DI A+TGSGKTAA+ +P +ERLLY+P ++ + RV++LTPTR
Sbjct: 253 TPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPVIERLLYKPAKLASTRVIVLTPTR 312
Query: 207 ELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
ELA+QV+ + +KI +F + + L VGGL+ + QE L+ PDIV+ATPGR+IDHLRNS
Sbjct: 313 ELAIQVNDVGKKIGKFVNGLSFGLAVGGLNLRQQEQELKQRPDIVIATPGRIIDHLRNSP 372
Query: 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
S ++D + +LI+DEADR+LE GF E+ E++ + P +RQT+LFSAT+ + LI+LSL
Sbjct: 373 SFNVDGVEILIVDEADRMLEEGFQKELTEILDILPTKRQTLLFSATMNSKIKSLIQLSLK 432
Query: 326 KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGTKQAAH 384
KP+R+ DP + + L +E VRIR+ R+ + ++L ++ K T +++IF K+ AH
Sbjct: 433 KPVRIMIDPPKQAATGLVQEFVRIRK-RDHLKPSILFNILKKFTKDQRIVIFVARKEQAH 491
Query: 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444
+L+I+ GL LK +ELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ V+N
Sbjct: 492 KLRIILGLLGLKVSELHGSLTQEQRLQSINNFKTLTVPILICTDLASRGLDIPKIEVVLN 551
Query: 445 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAG------SKLKSR 496
+ P++ Y+HRVGRTAR GREG +++FV ++ DRS++K K + +K R
Sbjct: 552 FDMPKNFEVYLHRVGRTARGGREGKSISFVGESSMDRSIVKDAIKSSQNMNSKVNKTVGR 611
Query: 497 IVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
V + + + +KIIE + + IL EE+ E+ + +AEME K EN++ +KEEI +RP+R
Sbjct: 612 EVNWKEVEEINKIIESKNEILEEILVEEKTEKEMIQAEMELRKGENLLRYKEEIQSRPRR 671
Query: 557 TWFVTEKEK 565
TWF E EK
Sbjct: 672 TWFEKESEK 680
>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
gi|74660102|sp|Q6CEB8.1|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica CLIB122]
Length = 753
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/510 (43%), Positives = 336/510 (65%), Gaps = 24/510 (4%)
Query: 80 IVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD-----GASFHANSFMELNLSR 134
+V +DH D+ P+D A + +F+AP + S H +F LNLSR
Sbjct: 212 LVLDDHKGPAIDEG----PQD-----TAEEMAAFYAPEEENNDKTESVH-KTFQTLNLSR 261
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
P+++ ALGY PTPIQ+ IP+AL G+D+ A+TGSGKTAA+ +P LERLLY+ ++
Sbjct: 262 PVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKV 321
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVAT 253
A +V++LTPTREL++QV + +K+AQ+ + +R L VGGL+ ++QE L++ P++V+AT
Sbjct: 322 AATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIAT 381
Query: 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313
PGR IDH+RNS S ++DD+ +L++DEADR+LE GF E+ E++ L PK+RQT+LFSAT+
Sbjct: 382 PGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQTLLFSATMN 441
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT-SK 372
+ LI+LSL++P+R+ +P + S L +E VRIR+ R+ + A+L S+ K +
Sbjct: 442 SSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRK-RDHLKPALLASILKKMDKEQR 500
Query: 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432
IIF K+ AHRL+I+ GL ++ ELHG L+Q QRL+++ F+K V L+ TD+A+R
Sbjct: 501 TIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPILVCTDLASR 560
Query: 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSL----LKAIA 486
GLDI ++ V+NY P+ Y+HRVGRTARAGREG ++T V + DR++ +K+++
Sbjct: 561 GLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVREAIKSVS 620
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
+ K R V + K IE+ D V IL EE+EE+ + +AEME K EN++ +
Sbjct: 621 ESKQGKAVGRNVDWPEVEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKY 680
Query: 547 KEEIFARPKRTWFVTEKEKKLAVKADKASI 576
++EI +RP+RTWF +EKK +DK ++
Sbjct: 681 EKEIASRPRRTWFQNAQEKKADETSDKRNL 710
>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
Length = 688
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/441 (47%), Positives = 289/441 (65%), Gaps = 6/441 (1%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
AS + SF +NLSRP+L+A A G++KPTPIQAACIPLAL GRD+C A TG+GKTAAF
Sbjct: 140 ASEPSVSFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAF 199
Query: 180 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
LP LERLL++PK+ RVL+L PTRELA+QV + ++QF+ + CL GGL K Q
Sbjct: 200 MLPILERLLFKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQ 259
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E ALR PDIV+ATPGR+IDHL N+ + L D+ VL+LDEADR+L+ F+ ++ EL+RLC
Sbjct: 260 EAALRLGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLC 319
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
RQT+LFSAT+T+ +++L +SL P+R+ + + + L +E +RIR E +E+
Sbjct: 320 SANRQTLLFSATMTDQIEQLAAVSLKNPVRIFINENTETALNLRQEFIRIRENHEHERES 379
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++++L ++ F ++F TK+A RL I+ GL +K +LH L+Q QR+E L F+
Sbjct: 380 IVVALVTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNA 439
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D LI+TD+AARGLDI GV TVIN P L Y+HRVGRTARAGR G +V+ DR
Sbjct: 440 ELDLLISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSVSLFGAADR 499
Query: 480 SLLKAI-AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
LLK I A G+ LK R + I +SK I +E+ + + +E + ER LR AE E
Sbjct: 500 KLLKEIVATHKGAPLKQRRIDAGVIEAYSKRIAALEESIQRVEEEFKAERALRLAEEELQ 559
Query: 539 KAENMIAHKEEIFARPKRTWF 559
+ E+ + + KR W
Sbjct: 560 RGEDKLQGNAQ-----KRHWM 575
>gi|407919354|gb|EKG12604.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 791
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/495 (46%), Positives = 314/495 (63%), Gaps = 38/495 (7%)
Query: 99 EDEDDFSNAGDTKSFFAPA---DG----ASFHANSFMELNLSRPLLRACEALGYSKPTPI 151
E+++D A K+FFAP DG A+ SF ++LSRP+L+ A+G+S+PTPI
Sbjct: 242 EEQEDPVEAERRKAFFAPEENIDGSKPPAAKGKGSFQHMSLSRPILKGLAAVGFSEPTPI 301
Query: 152 QAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211
QA IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P RV IL PTRELAVQ
Sbjct: 302 QAKTIPVALLGKDVVGGAVTGSGKTAAFVIPILERLLYRPKKVPTTRVAILMPTRELAVQ 361
Query: 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271
++ +K+A FTDI +VGG S + QE L+ PD+V+ATPGR IDH+RNS S +D
Sbjct: 362 CFNVSKKLAAFTDITFAQIVGGFSLREQENILKQRPDVVIATPGRFIDHMRNSASFAVDT 421
Query: 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331
L +L+LDEADR+LE GF+ E++E++ PK RQTMLFSAT+T+ VD+LI++ L +P+RL
Sbjct: 422 LEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLM 481
Query: 332 ADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391
D S L +E VR+R +E + AVL+ LC K +T +VIIF K+ AHR
Sbjct: 482 VDAKKATVSGLVQEFVRLRPGKEEKKLAVLMHLCQKVYTDRVIIFFRQKKEAHR------ 535
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
H T A+E FR L+ATD+A+RGLDI GV TVINY P+
Sbjct: 536 ---------HEPRT------AVESFRSHAASHLLATDLASRGLDIKGVNTVINYGAPQSH 580
Query: 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLK----------AIAKRAGSKLKSRIVAEQ 501
Y+HRVGRTAR G G + T + DR ++K A K A K+ SR V
Sbjct: 581 DIYLHRVGRTARGGATGRSCTIAAEPDRKVVKAVVKAARAQAAQDKAAPPKIVSRQVPFD 640
Query: 502 SITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVT 561
I +W ++ ME +V IL+EE+EE+ + + +ME K EN+I H++EI +RPKRTWF +
Sbjct: 641 EIDEWDSKLKDMEAEVEEILKEEKEEKAMAQVDMEIRKGENLITHQDEIMSRPKRTWFES 700
Query: 562 EKEKKLAVKADKASI 576
E +KK A A +A +
Sbjct: 701 EAQKKAAKDAGRAQL 715
>gi|391340178|ref|XP_003744422.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Metaseiulus occidentalis]
Length = 721
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/462 (45%), Positives = 303/462 (65%), Gaps = 12/462 (2%)
Query: 116 PADGASFHANS---FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
P + FH +S F ++LSRPLL+A A+ + PTPIQ + IP+AL GRDI A TG
Sbjct: 132 PDQSSDFHGSSDVSFQNMDLSRPLLKALTAMKFVNPTPIQRSAIPVALGGRDIYACAATG 191
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
+GKTAAF LP LERLLYR + RV+++ PTREL+VQV+ + ++AQFT I L G
Sbjct: 192 TGKTAAFMLPVLERLLYRSRGEIVTRVIVVVPTRELSVQVYQVSIQLAQFTSINVALATG 251
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL K+QE+ LR PDI++ATPGR+IDHL+N+ + +L ++ V+ILDEAD+LLE F+ ++
Sbjct: 252 GLDLKVQESHLRQNPDIIIATPGRLIDHLQNTPTFNLHNIEVMILDEADKLLEDQFAEQL 311
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
E+++ C RQTMLFSAT+++ V +L KLSL P+RL + + L +E VRIR
Sbjct: 312 KEIIKQCAPTRQTMLFSATMSDRVQDLAKLSLKDPVRLFLNNNTDVALNLRQEFVRIRSQ 371
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
RE ++E +L +L ++ F + I+F TK+ AHR++IL L ++ ELH L Q QR+EA
Sbjct: 372 REGDREPILCALVTRYFGNHSIVFVQTKKLAHRIRILLELLGVQVEELHSGLNQTQRIEA 431
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L+ F + VD L+ TD+ ARGLDI V+TVINY P L YVHRVGRTARAG+ G +V+
Sbjct: 432 LKRFTLEEVDVLVTTDLTARGLDIKDVRTVINYTLPPTLQQYVHRVGRTARAGKVGRSVS 491
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER---I 529
V D +R +LK I ++A + +K RIV Q I K+ + IE +E+ + A+ +EE+ ER +
Sbjct: 492 LVGDQERKVLKEIIRKAKTPVKQRIVDPQVIKKFVERIESVEESMRAVFEEEKIERNMKL 551
Query: 530 LRKAEMEATKAENMIAHKEEIFARP------KRTWFVTEKEK 565
++ E E K ++ + +E R KR+WF T E+
Sbjct: 552 IQTEEEEVDKIKDKLHDRERSKLRATNNDPVKRSWFQTPNER 593
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/458 (45%), Positives = 293/458 (63%), Gaps = 13/458 (2%)
Query: 104 FSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR 163
F NA T + A A SF ++NLSR LL+A A G+++PT IQ+ CIPLAL GR
Sbjct: 126 FDNATSTNALNAET------AISFDQMNLSRALLKAITACGFTEPTRIQSTCIPLALAGR 179
Query: 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
D+C + TG+GKTAAF LP LERLLYRP++ RV++LTPTRELA+Q + +++QF
Sbjct: 180 DLCACSATGTGKTAAFMLPVLERLLYRPQQKAMTRVVVLTPTRELAIQTFQVSRQLSQFM 239
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
I CL GGL K QE ALR PDIV+ATPGR+IDHL N+ + L ++ +L+LDEADR+
Sbjct: 240 RIDICLCAGGLDLKTQEAALRQRPDIVIATPGRLIDHLHNAPNFSLVNVEILVLDEADRM 299
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
L+ F+ ++ E++ LC + RQTMLFSAT+T+ V+EL +SL P++L + + L
Sbjct: 300 LDEAFADQMKEIIHLCAQNRQTMLFSATMTDQVEELAAVSLKNPVKLFITGNTETALNLR 359
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+E VRIR E ++E ++ L ++ F IIF TK+ RL I+ GL +K +LH
Sbjct: 360 QEFVRIRESHETDRECIVAGLVTRNFPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSG 419
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ QR+EAL F+K +D L++TD+AARGLD+ GV+TVIN P L YVHRVGRTAR
Sbjct: 420 LTQRQRVEALFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTAR 479
Query: 464 AGREGYAVTFVTDNDRSLLKAI--AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
AGR G +++ V +++R +LK I + + G LK R+++ + + IE +E+ + I
Sbjct: 480 AGRVGRSISLVGESERKILKEIIASNKGGGCLKQRLISANVVEAYKNRIESLEESIERIR 539
Query: 522 QEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 559
QEE ER LR A+ E + + + E KR W
Sbjct: 540 QEEEVERTLRLAQEELQRGKTKLEGNVE-----KRCWI 572
>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 355
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/341 (57%), Positives = 264/341 (77%), Gaps = 2/341 (0%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL++ +LG++KPTPIQAA IP+AL G+D+ G+A+TGSGKTAAF +P +ERLLY
Sbjct: 1 MNLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLLY 60
Query: 190 R--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 247
R K+ A R L+L PTRELAVQ + K++ TDI+ CL+VGGLS K QE ALR+ P
Sbjct: 61 REKGKKAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRARP 120
Query: 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307
DIV+ATPGR+IDH+RNS + LD + +L+LDEADR+L GF+ E+ E+++ CP RQTML
Sbjct: 121 DIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTML 180
Query: 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK 367
FSAT+T+ VDEL+K+SL KP+RL DP L +E VR+R ++ + A+L++LC +
Sbjct: 181 FSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVALCKR 240
Query: 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427
TF ++VIIF +K+ AH+++I+F L LK ELHG+L+Q QRL+AL+LFR VDFL+AT
Sbjct: 241 TFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFLMAT 300
Query: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
D+A+RGLDI GV+T+INY P L+ Y+HRVGRTARAG++G
Sbjct: 301 DLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQG 341
>gi|449018026|dbj|BAM81428.1| probable ATP dependent RNA helicase [Cyanidioschyzon merolae strain
10D]
Length = 703
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 240/543 (44%), Positives = 327/543 (60%), Gaps = 83/543 (15%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ S+ L LS +LR E+LG+ +PTPIQA IP+AL GRD+ GSA+TGSGKTAAF +P
Sbjct: 139 SESWAALALSPRMLRVVESLGWMQPTPIQAQAIPVALAGRDVLGSAVTGSGKTAAFLIPI 198
Query: 184 LERLLYRPKR------------IPAIRVLILTPTRELAVQVHSMIEKI------------ 219
+ERL YR +R AIRVLI+ PTRELAVQ H+++E I
Sbjct: 199 IERL-YRAQRADGVRFAADASQTAAIRVLIVLPTRELAVQCHAVLEAICDRTARESARRM 257
Query: 220 ----AQF------TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL 269
A+F T +R L+VGGL+ K QE ALR +PDI++ TPGR+IDH RN+ + L
Sbjct: 258 KQGVAKFVGTPEQTRLRSVLLVGGLALKPQELALRHVPDIIIGTPGRIIDHARNAPNFTL 317
Query: 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKR---RQTMLFSATLTEDVDELIKLSLT- 325
DD+ +L+LDEADRLL++GF E+ E+VRLC RQTMLFSATL V+EL + +L
Sbjct: 318 DDVEILVLDEADRLLQMGFMDELREVVRLCAASAPYRQTMLFSATLDAGVEELARFALAP 377
Query: 326 -KPLRLSADPSAKRPSTLTEEVVRIRRMREV---------------------NQEAVLLS 363
+ + + D + TL +E V++ +M EV + A+LL+
Sbjct: 378 DRVVTVRVDATFDLVGTLVQEFVKL-QMPEVLVEPAQDTRDTLTHAEQVVQTERAALLLA 436
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK-QHVD 422
LCS++FT +VI+F K+ AH KI+F L L+AAELHGNLTQAQRL+ALE FR + D
Sbjct: 437 LCSRSFTRRVIVFFARKRTAHLFKIIFDLVGLRAAELHGNLTQAQRLDALEAFRTCTNAD 496
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND---R 479
FL+ TD+AARGLDI GV+TV+NY P+D+ YVHRVGRTARAG+ G AV+ D R
Sbjct: 497 FLLCTDLAARGLDIHGVETVLNYELPKDIREYVHRVGRTARAGKHGRAVSIFQQTDRKER 556
Query: 480 SLLKAIAKRA---------------GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
LL+ + ++A L R + I +W + + D V L++E
Sbjct: 557 HLLRRLREQARRYRVDALRGDAPVPAPVLLERRIPATVIREWRDRLHSLLDSVREKLRQE 616
Query: 525 REERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK--ASIEKGKGS 582
RE R L +AE KA N++ H++EI+ARP RTWF ++ E+K A D+ AS E+ + S
Sbjct: 617 REHRELERAERLERKAHNLLIHEQEIYARPPRTWFQSKAERKRAQMVDQEPASKERSERS 676
Query: 583 GNE 585
+
Sbjct: 677 NSH 679
>gi|354547460|emb|CCE44195.1| hypothetical protein CPAR2_504190 [Candida parapsilosis]
Length = 604
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/475 (45%), Positives = 320/475 (67%), Gaps = 22/475 (4%)
Query: 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSG 174
AP + S +F EL LSRP+L++ ++L ++ PTPIQ++ IP+AL G+DI A TGSG
Sbjct: 118 APTNETS---TTFQELQLSRPILKSIQSLSFTSPTPIQSSTIPIALLGKDIVAGAQTGSG 174
Query: 175 KTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGG 233
KTAA+ +P +ERL++ K + + +ILTPTRELA+QV+ + +K+ QF ++ L VGG
Sbjct: 175 KTAAYLIPLIERLIF--KNATSTKAIILTPTRELAIQVYDVGKKLGQFVKNLSFGLAVGG 232
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293
L+ + QE L+S PDIV+ATPGR+IDH+RNS S ++D+ VL++DEADR+LE GF E+
Sbjct: 233 LNLRQQEQQLKSRPDIVIATPGRLIDHIRNSPSFSVEDVQVLVIDEADRMLEEGFQEELT 292
Query: 294 ELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
E++ L PK +RQT+LFSAT+ V +L++LSL KP+R+ DP S L ++ VRIR+
Sbjct: 293 EILSLIPKQKRQTLLFSATMNTKVQDLVQLSLNKPVRVMIDPPKTVASRLEQQFVRIRK- 351
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
RE + A+L L K ++++F K+ AH+L+++ GL LK AELHG LTQ QRL
Sbjct: 352 RENLKPALLFQLLRK-LDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQEQRLAN 410
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
++LF V+ L+ TD+AARGLDI ++ V+N+ P+ Y+HRVGRTARAGR+G ++T
Sbjct: 411 MKLFM-NDVNVLVCTDLAARGLDI-RIEYVVNFDMPKTYEIYLHRVGRTARAGRKGTSIT 468
Query: 473 FV--TDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
FV ++ DR+++KA S +R V + +K IE+ E + +LQEE+E + +
Sbjct: 469 FVGESNQDRAIVKAAINNGRS--VARKVDWNDVEAINKRIEEKESVIDEVLQEEKEAKEI 526
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWF-------VTEKEKKLAVKADKASIEK 578
+AEM+ KA N+I ++++I +RPKRTWF +T+ KK+ K KA+ EK
Sbjct: 527 LRAEMQLNKASNLIKYEKDIHSRPKRTWFKSDVMGQLTKHGKKVNSKKRKANEEK 581
>gi|367028222|ref|XP_003663395.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
gi|347010664|gb|AEO58150.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
Length = 1400
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/468 (46%), Positives = 296/468 (63%), Gaps = 62/468 (13%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF ++LSRP+LR ++G++KPTPIQA IP+AL G+D+ G A+TGSGKTAAF +P L
Sbjct: 286 SSFQSMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFIVPIL 345
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERLLYRPK++P RV+ILTPTRELA+Q HS+ K+A TDI+ CL VGGLS K+QE LR
Sbjct: 346 ERLLYRPKKVPTTRVVILTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELR 405
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PD+V+ATPGR IDH+RNS S ++ + +L+LDEADR+LE GF+ E++E++ PK RQ
Sbjct: 406 LRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQ 465
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+T VD+LI++ L KP R+ D + TLT+E VR+R RE + V
Sbjct: 466 TMLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAGTLTQEFVRLRPGREEKRMGV---- 521
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
E FR V+FL
Sbjct: 522 -------------------------------------------------EAFRDGKVNFL 532
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+A+RGLDI G+ TVINY P+ L YVHRVGRTARAGR G A+T + DR ++KA
Sbjct: 533 LATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVALTLAAEPDRKVVKA 592
Query: 485 IAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
K G+K+ SR++ KW +++M++++ IL+EE+EE+ L + EM+ K E
Sbjct: 593 AVKAGKAQGAKIISRVIDPAEADKWQAQVDEMDEEIEEILREEKEEKQLAQMEMQVKKGE 652
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIE------KGKGSG 583
N+I ++EEI +RPKRTWF +++ KK A + +A + K KG G
Sbjct: 653 NLIKYEEEIHSRPKRTWFESQEAKKKAKELGRAELNGIREALKKKGGG 700
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/478 (46%), Positives = 318/478 (66%), Gaps = 13/478 (2%)
Query: 113 FFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
F+ + H SF L LSRP+L+ L ++KPTPIQ+A IP+AL G+DI A TG
Sbjct: 119 FYEESSPQQTHT-SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTG 177
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVV 231
SGKT A+ +P +ERLLY+P + +V+ILTPTRELA+QV+ +K++ ++ L V
Sbjct: 178 SGKTGAYMIPIIERLLYKPS--TSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAV 235
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGL+ + QE L++ PDIV+ATPGR+IDH+RNS S + D+ VL++DEADR+LE GF E
Sbjct: 236 GGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDE 295
Query: 292 IHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+ E++ L PK +RQT+LFSAT+ + +LI+LSL KP+R+ DP S L ++ VRIR
Sbjct: 296 LTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIR 355
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+ R+ + A+L L K +S+V++F K+ AHRL+I+ GL LK +ELHG LTQ QRL
Sbjct: 356 K-RDQLKPALLYQLL-KGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRL 413
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
+ ++ F+ V LI TD+AARGLDI ++ VINY P+ Y+HRVGRTARAGR+G +
Sbjct: 414 QNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTS 473
Query: 471 VTFVTDNDRSLLKAIAKRA--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
+TFV ++ + +AI K A K ++ V + + +K++E E + +L+EE+E +
Sbjct: 474 ITFVGESSQE--RAIVKSAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAK 531
Query: 529 ILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 586
L +AEME TKA N+I H++EI +RPKRTWF E ++L K + +K K NEV
Sbjct: 532 ELLRAEMELTKASNLIKHEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRK--ANEV 587
>gi|448528530|ref|XP_003869731.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis Co 90-125]
gi|380354084|emb|CCG23598.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis]
Length = 632
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/486 (44%), Positives = 321/486 (66%), Gaps = 22/486 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LSRP+L++ ++L ++ PTPIQ++ IP+AL G+DI A TGSGKTAA+ +P +E
Sbjct: 154 TFQELQLSRPILKSIQSLSFTSPTPIQSSTIPIALLGKDIVAGAQTGSGKTAAYLIPLIE 213
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR 244
RL++ K + + +IL PTRELA+QV+ + K+ QF ++ L VGGL+ + QE L+
Sbjct: 214 RLIF--KNSTSTKAIILAPTRELAIQVYDVGRKLGQFVKNLSFGLAVGGLNLRQQEQQLK 271
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RR 303
S PDIV+ATPGR+IDH+RNS S ++D+ VL++DEADR+LE GF E+ E++ L PK +R
Sbjct: 272 SRPDIVIATPGRLIDHIRNSPSFSVEDVQVLVIDEADRMLEEGFQEELTEILSLIPKQKR 331
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ V +L++LSL KP+R+ DP S L ++ VRIR+ RE + A+L
Sbjct: 332 QTLLFSATMNTKVQDLVQLSLNKPVRVMIDPPKTVASRLEQQFVRIRK-RESLKPALLFQ 390
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K ++++F K+ AH+L+++ GL LK AELHG LTQ QRL ++LF V+
Sbjct: 391 LLRK-LDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQEQRLANMKLFMGD-VNV 448
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSL 481
L+ TD+AARGLDI ++ V+N+ P+ Y+HRVGRTARAGR+G ++TFV ++ DR++
Sbjct: 449 LVCTDLAARGLDI-RIEYVVNFDMPKTYEIYLHRVGRTARAGRKGTSITFVGESNQDRAI 507
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
+KA S +R V + +K I++ E V +LQEE+E + + +AEM+ KA
Sbjct: 508 VKAAINNGRS--VARKVDWNDVEAINKRIDEKESVVDEVLQEEKEAKEILRAEMQLNKAS 565
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
N+I ++++I +RPKRTWF ++ +L K + +K K + ED K EKR
Sbjct: 566 NLIKYEKDIHSRPKRTWFKSDVMGQLTKHGKKVNSKKRKAN----------EDKKENEKR 615
Query: 602 KREREK 607
++ K
Sbjct: 616 SYKKTK 621
>gi|331219074|ref|XP_003322214.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301204|gb|EFP77795.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 785
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 227/534 (42%), Positives = 330/534 (61%), Gaps = 38/534 (7%)
Query: 123 HANSFMEL----NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
H F L +LSRP+L ++ + PTPIQ IPL L G+D+ S++TGSGKT
Sbjct: 241 HDQPFSSLPGAASLSRPVLLGLSSMSITSPTPIQRQAIPLGLLGKDLVCSSVTGSGKTLG 300
Query: 179 FALPTLERLLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
+ +P +ERL++R K+ RV+ILTPTRELAVQV + + +A+FTD+ L VGG+ +
Sbjct: 301 YMVPIVERLIWRDKKGGGRTRVMILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGMDLR 360
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
QE LR P+IV+ TPGR+IDH+RN+ L+ L +L++DEADR+LE GF E+ E++
Sbjct: 361 TQEAELRERPEIVIGTPGRVIDHIRNTRGFSLETLEILVIDEADRILEEGFQDELEEIIS 420
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR------- 350
CP+ RQTMLFSAT+ E V +L KLSL KP+R+ DP + LT+E ++++
Sbjct: 421 NCPRSRQTMLFSATVNESVADLAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASNKK 480
Query: 351 --RMREVNQEAVLLSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ +V ++A+L++LC + SK IIF +K AHR+KI+F L +LKA ELHGNL Q
Sbjct: 481 AASLTDVTRQAILVTLCKASAFSKGRTIIFFRSKVGAHRMKIIFSLFSLKAEELHGNLNQ 540
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
QRL AL+ F+ FL+ATD+A+RGLDI GV+ VINY P Y+HR+GRTARAG
Sbjct: 541 QQRLAALQKFKDGETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGT 600
Query: 467 EGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+G A+T V ++DR L+K K +K+R + + + +E++ +A I++E
Sbjct: 601 KGSALTLVGESDRKLIKEARKNCLATQGAIKNRRLDPNLVKDVKEELEKLSSTIAEIIEE 660
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWF----VTEKEKKLAVKADKASIEKG 579
E+EE+ LR +EM+ K +N+I H++EI +RP RTWF +K KK+ A A+ K
Sbjct: 661 EKEEKELRNSEMQMKKCQNLIEHEDEIKSRPARTWFQSESEKKKSKKIGTTAHTANFAK- 719
Query: 580 KGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDEDQVDKL 633
Q L K KR+R L RK++R R+M ++ED ++L
Sbjct: 720 ---------TDQRSVLPKKTAIKRDRFDGLSRKQKR-----RKMGQEEDAKERL 759
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/486 (44%), Positives = 325/486 (66%), Gaps = 16/486 (3%)
Query: 102 DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT 161
D+F + +T + ++ + +F EL LSRP+L++ + LG++ PTP+QA+ IP+AL
Sbjct: 178 DNFYESQETNT-----SASALKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALL 232
Query: 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
G+DI SA TGSGKTAA+ +P +ERLLY K + + +ILTPTRELA+QVH + K+ Q
Sbjct: 233 GKDIVASAQTGSGKTAAYLIPIIERLLY-VKNSTSTKAIILTPTRELAIQVHDVGRKLGQ 291
Query: 222 F-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280
F +++ + VGGLS K QE L++ PDIV+ATPGR+IDH+RNS S ++D+ VLI+DEA
Sbjct: 292 FVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEA 351
Query: 281 DRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKR 338
DR+LE GF E+ E++ L PK +RQT+LFSAT+ + +L++LSL KP+++S DP
Sbjct: 352 DRMLEEGFQEELTEILSLIPKQKRQTLLFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTV 411
Query: 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
S L ++ VRIR+ E+ + +L L K + ++F+ TK AH+L+I+ GL L A
Sbjct: 412 ASKLEQQFVRIRKREEL--KPAVLYLLLKKLEGRTVVFTRTKVEAHKLRIILGLLGLTVA 469
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
ELHG LTQ QRL ++ F K +V+ LI TD+AARGLD I ++ VINY P+ Y HRV
Sbjct: 470 ELHGALTQEQRLANVKAF-KNNVNVLICTDLAARGLD-IRIEYVINYDMPKTYEIYTHRV 527
Query: 459 GRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQ 516
GRTARAGR+G +++FV ++ DR+++K A + S+ +R + + K I+ E
Sbjct: 528 GRTARAGRKGTSISFVGESMQDRNIVKN-AIQFNSRSVARKIDWDEVEKIQTKIKLNEGA 586
Query: 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASI 576
+ +++EE++ R + +AEM+ KAEN++ +++EI +RPKRTWF +E + L K +
Sbjct: 587 IEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKSRPKRTWFKSEVMEHLTKHGKKVNA 646
Query: 577 EKGKGS 582
+K K +
Sbjct: 647 KKRKAN 652
>gi|47211205|emb|CAF90162.1| unnamed protein product [Tetraodon nigroviridis]
Length = 517
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/449 (44%), Positives = 293/449 (65%), Gaps = 32/449 (7%)
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LP LERL+Y+P+ RVL+L PTREL +QVHS+ ++AQFT I CL VGGL K QE
Sbjct: 2 LPVLERLVYKPRTSQVTRVLVLVPTRELGIQVHSVSRQLAQFTSITTCLAVGGLDLKSQE 61
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALR+ PD+++ATPGR+IDHL N+ S +L + +LILDEADR+L+ F ++ E++RLC
Sbjct: 62 VALRAGPDVLIATPGRLIDHLHNTPSFELSHIEILILDEADRMLDEYFEEQMKEIIRLCS 121
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
RQTMLFSAT++E+V +L +SL +P+R+ + + L +E VRIR +E ++EAV
Sbjct: 122 YNRQTMLFSATMSEEVKDLAAVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAV 181
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ +L ++TF V+ F+ T++ AHRL IL GL LK ELHG L+Q QRLE L F+ +
Sbjct: 182 VAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQ 241
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R
Sbjct: 242 IDILVATDVAARGLDIDGVKTVINFTMPSTMKHYVHRVGRTARAGRSGRSVSLVGESERK 301
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
+LK + K A + +K+R++ + I K+ +I ++E V A+++ E+EER E+ A++A
Sbjct: 302 ILKEVVKSAKTSVKARVLPPEVILKFRDLISKLEKDVEAVVKLEKEER-----ELAASEA 356
Query: 541 ENMIAHKE----EIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLK 596
+ +A K+ A+ +R WF T++E+K + ++ A Q DL
Sbjct: 357 KLSVAQKQLDGSNTPAQSQRVWFQTQQERK----------------QSRISKALQEFDLA 400
Query: 597 IKEKRKRE-------REKNLPRKERRKLE 618
++ KRKRE R+K L +ER + E
Sbjct: 401 LRGKRKREKFLKDSKRKKELTPEERAQFE 429
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/451 (42%), Positives = 283/451 (62%), Gaps = 2/451 (0%)
Query: 118 DGASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
D F N+ F +L L++ L++AC GY PT IQA +PL L G+D+ S+ TGSGKT
Sbjct: 83 DPKIFATNTDFQQLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKT 142
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAF LP ++R K + LI+ PTRELA+Q M +K+ QF+ LV+G +
Sbjct: 143 AAFLLPLMQRF-GNTKSQKYSKALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPI 201
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
+ QE LR PDI++ATPGR++D ++NS S+DL + VL+LDEADRL+E+GF AEI E++
Sbjct: 202 QQQEAELRRYPDIIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEIL 261
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+ P+ RQT+L SATL V +L L+L KP+++S D L + ++RI E +
Sbjct: 262 QQTPRDRQTVLVSATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKD 321
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+EA L++L + F K IIF TK HRL+IL GL L + ELHGNLTQ QR++A E F
Sbjct: 322 REATLIALLQQKFIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDF 381
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
++ +L+ATD+AARGLDI V+ VIN+ P + + Y+HRVGRTAR G +G +VT
Sbjct: 382 KEGKFQYLLATDLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLK 441
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ S K + K + KL +SI + ++ +E ++ I++ E E+ + + E+
Sbjct: 442 KEVSQFKQMIKESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTEIL 501
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
A +A+N+I H+ EI +PK+ W + ++KKL
Sbjct: 502 AQRAQNLIQHRVEIMRKPKKEWIQSAQQKKL 532
>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230863|emb|CCD77280.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 625
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/459 (43%), Positives = 285/459 (62%), Gaps = 27/459 (5%)
Query: 114 FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS 173
FA A +SF+EL+L++PLL++ + KPTPIQ ACIP+AL RDIC A TGS
Sbjct: 114 FAHAVTKYKQVSSFIELSLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGS 173
Query: 174 GKTAAFALPTLERLLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLV 230
GKT AF LP LERL + R L+++PTRELAVQ+ ++ EK+ ++ +R L
Sbjct: 174 GKTLAFLLPVLERLAKKSTDFNHAVTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLA 233
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GGL QE +LR PD+VVATPGR+IDHL N+ S +L + L+LDEAD+LL+ F+
Sbjct: 234 AGGLDLHSQEASLRLNPDLVVATPGRLIDHLSNAPSFNLQHIEYLVLDEADKLLDEYFAE 293
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+I E+++ C +RQT+LFSAT+TE V EL LSL P+++ + + L +E VRIR
Sbjct: 294 QIGEIIKFCSTKRQTLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIR 353
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++ A++++L + F + I+F TK+ H++ I+ GL L ELHGN+TQAQRL
Sbjct: 354 PHREDDRRAIVIALLMRHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRL 413
Query: 411 EALELFRK------------------------QHVDFLIATDVAARGLDIIGVQTVINYA 446
EAL+ F + VD L+ATD+A+RGLDI VQTVINY
Sbjct: 414 EALKRFSYVGTSDECKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINYT 473
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 506
P+ + YVHRVGRTAR G AV+ V ++DR ++K I K+A +K+R++A I +
Sbjct: 474 LPQTMKQYVHRVGRTARIMNVGRAVSLVGEDDRKVMKEIMKQAPYPVKARVIASDVIATY 533
Query: 507 SKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIA 545
I ++E + IL E EER LR A+ + +KAE +++
Sbjct: 534 QSKITRLEPIIGKILAAEAEERELRAAQSQLSKAEELVS 572
>gi|385303016|gb|EIF47118.1| nucleolar dead-box protein required for synthesis of 60s ribosomal
subunits [Dekkera bruxellensis AWRI1499]
Length = 410
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 194/406 (47%), Positives = 274/406 (67%), Gaps = 11/406 (2%)
Query: 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221
G+D+ A TGSGKTAA+ +P +ERLLY+P + + RV+I+ PTRELA+QV + +I+Q
Sbjct: 2 GKDVVAGAQTGSGKTAAYLIPIIERLLYKPAHVASTRVVIMAPTRELAIQVADVARRISQ 61
Query: 222 F-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280
F + I + VGGLS + QE L+ PDIV+ATPGR IDH+RNS S +D++ +++LDEA
Sbjct: 62 FVSGITIGMAVGGLSLRKQELELKKRPDIVIATPGRFIDHVRNSPSFSVDNVEIMVLDEA 121
Query: 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 340
DR+LE GF AEI E+++L P++RQTMLFSAT+ ++ +LI+LSL KP R+ DP S
Sbjct: 122 DRMLEEGFHAEITEILQLLPQKRQTMLFSATMNSNISDLIQLSLQKPARIMIDPPKAAAS 181
Query: 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFT---SKVIIFSGTKQAAHRLKILFGLAALKA 397
L +E VRIR+ R+ + A+L + +K + S++I+F TK AHRL+I+ GL LK
Sbjct: 182 GLLQEFVRIRK-RDGLKPALLYDVLAKLXSNNQSRIIVFVATKTLAHRLRIVMGLLGLKV 240
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG L+Q QRL+++ F+K V LI TD+A+RGLDI ++ VINY P++ Y+HR
Sbjct: 241 XELHGALSQEQRLDSITAFKKLTVPILICTDLASRGLDIPKIEVVINYDMPKNHEIYLHR 300
Query: 458 VGRTARAGREGYAVTFVTDNDR------SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE 511
VGRTARAGR G +++FV ++ R +K I K SR V ++K + IIE
Sbjct: 301 VGRTARAGRXGKSISFVGESKRERHIVKESIKQIESSHTGKAVSRKVDWAEVSKINSIIE 360
Query: 512 QMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRT 557
+D V +L EE+ E+ L +AEME K ENM+ +K+EI ARPKR
Sbjct: 361 TKKDDVDDVLSEEKAEKELLQAEMELKKGENMLKYKDEIEARPKRN 406
>gi|401412566|ref|XP_003885730.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
gi|325120150|emb|CBZ55704.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
Length = 969
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 220/524 (41%), Positives = 303/524 (57%), Gaps = 73/524 (13%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLE
Sbjct: 232 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLE 291
Query: 186 RLLYRP-----KRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RLL+ P K P + L+L PTRELA+Q M++ ++++T + L G
Sbjct: 292 RLLHSPGVRTRKMTPNGPAGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPVTHALACG 351
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G++ K E ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI
Sbjct: 352 GMTLKAHENALRQQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEI 411
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR--------- 338
++R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 412 LAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEAAVGDSTADREKSGFTVTS 471
Query: 339 -----------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
STL ++ V ++ R+ ++ LL LC+ +T VI+F TKQ AH+
Sbjct: 472 LQAATAALKQVSSTLEQQFVMLQ--RDEHRAPALLHLCTTAYTKNVIVFFQTKQLAHQTS 529
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
+LF L+ AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+
Sbjct: 530 LLFKFMGLQYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNV 589
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI-----------AKRAG 490
P D+ Y+H VGRTAR GR G AVT + + LL+A+ K
Sbjct: 590 PADIDRYIHSVGRTARMGRSGVAVTLYHRDGPERLQVKKLLQALRGGLNQSGEKPGKSRN 649
Query: 491 SKLKSRIVAEQSITKWSKI---------IEQMEDQVAAI-------LQEEREERILRKAE 534
SK K + S ++ +E +E +V ++ L+ E+ ER +R AE
Sbjct: 650 SKGKGDTAQDGSSAGAPRVFQRRIDADKLEALEKKVKSLQGDISRELKREKLEREVRLAE 709
Query: 535 MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
+ KAEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 710 LHLQKAENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 753
>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
Length = 962
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 215/522 (41%), Positives = 299/522 (57%), Gaps = 71/522 (13%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLE
Sbjct: 225 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLE 284
Query: 186 RLLYRPK-------------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RLL+ P + + L+L PTRELA+Q M++ ++++T I L G
Sbjct: 285 RLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACG 344
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G++ K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI
Sbjct: 345 GMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEI 404
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR--------- 338
++R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 405 LAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTS 464
Query: 339 -----------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
STL ++ V + RE ++ LL LC+ +T VI+F TK+ AH+
Sbjct: 465 LQAATAALKTVSSTLEQQFVMLH--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTS 522
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
+LF LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+
Sbjct: 523 LLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNV 582
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI---------------- 485
P D+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 583 PADIDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAVKGKK 642
Query: 486 ---------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+
Sbjct: 643 GKGDKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELH 702
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
KAEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 703 LQKAENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 744
>gi|237842773|ref|XP_002370684.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968348|gb|EEB03544.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
Length = 962
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 215/522 (41%), Positives = 300/522 (57%), Gaps = 71/522 (13%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLE
Sbjct: 225 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLE 284
Query: 186 RLLYRPK-------------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RLL+ P + + L+L PTRELA+Q M++ ++++T I L G
Sbjct: 285 RLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACG 344
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G++ K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI
Sbjct: 345 GMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEI 404
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR--------- 338
++R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 405 LAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTS 464
Query: 339 -----------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
STL ++ V ++ RE ++ LL LC+ +T VI+F TK+ AH+
Sbjct: 465 LQAATAALKTVSSTLEQQFVMLQ--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTS 522
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
+LF LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+
Sbjct: 523 LLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNV 582
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI---------------- 485
P D+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 583 PADIDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAGKGKK 642
Query: 486 ---------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+
Sbjct: 643 GKGDKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELH 702
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
KAEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 703 LQKAENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 744
>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
Length = 959
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 215/522 (41%), Positives = 299/522 (57%), Gaps = 71/522 (13%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LSRPLLRA + L Y+ PT IQAAC+ AL GRD+ +A TGSGKTAAF LPTLE
Sbjct: 222 AWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPTLE 281
Query: 186 RLLYRPK-------------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RLL+ P + + L+L PTRELA+Q M++ ++++T I L G
Sbjct: 282 RLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYTPITHALACG 341
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G++ K E+ALR PDIVVATPGR++D L NS +V L+ L +++LDEADRLLELGF EI
Sbjct: 342 GMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLELLEIIVLDEADRLLELGFREEI 401
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA-----DPSAKR--------- 338
++R C + RQT+LFSATLT + L L+L +PL +SA D +A R
Sbjct: 402 LAILRHCHRARQTLLFSATLTPSIASLASLALNRPLHISAEATVTDSTAGREKSGFTVTS 461
Query: 339 -----------PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
STL ++ V + RE ++ LL LC+ +T VI+F TK+ AH+
Sbjct: 462 LQAATAALKTVSSTLEQQFVMLH--REEHRAPALLHLCTTAYTKNVIVFFQTKKLAHQTS 519
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
+LF LK AELHGNLTQ R+EALE F DFL+A+++A+RGLDI GV+ VIN+
Sbjct: 520 LLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNV 579
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAI---------------- 485
P D+ Y+H VGRTAR GR G AVT + + LL A+
Sbjct: 580 PADIDRYIHSVGRTARMGRSGVAVTIYHRDGTERLQVKKLLHALRSGLNQPGEKAVKGKK 639
Query: 486 ---------AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ +G ++ R + + K ++ ++ + L+ E+ ER +R AE+
Sbjct: 640 GKGDKAQDGSLASGPRVFQRRIDADKLEMLEKKVKSLQGDIVRELKREKLEREVRLAELH 699
Query: 537 ATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEK 578
KAEN+ H +EI++RP R WF+T KEK+ KA + K
Sbjct: 700 LQKAENLQTHADEIYSRPMRQWFMTAKEKQRLKDESKALVGK 741
>gi|10732632|gb|AAG22482.1|AF193054_1 unknown [Homo sapiens]
Length = 312
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/309 (55%), Positives = 230/309 (74%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y
Sbjct: 1 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR+ PDI
Sbjct: 61 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTMLFS
Sbjct: 121 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T++V +L +SL P+R+ + + S L +E +RIR RE ++EA++ +L ++TF
Sbjct: 181 ATMTDEVKDLASVSLKNPVRIFVNKQHRCGSLLRQEFIRIRPNREGDREAIVAALLTRTF 240
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
T V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDV
Sbjct: 241 TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDV 300
Query: 430 AARGLDIIG 438
AARGLDI G
Sbjct: 301 AARGLDIEG 309
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 282/464 (60%), Gaps = 32/464 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ L LSRP+LR ALG+++PTP+Q IP+AL +DI A TGSGKT F LP +E
Sbjct: 134 AWASLQLSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVE 193
Query: 186 RLL----YRPKRI-----------PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
RL R +R A + L+L PTRELAVQ + M+ +F + CLV
Sbjct: 194 RLCQASHVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLV 253
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
VGG + Q + +R+ PD+V+ATPGR++D L NS ++ L+ +++LDE DRLLE+GF
Sbjct: 254 VGGFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRD 313
Query: 291 EIHELV-RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
E ++ + C + RQTM+FSAT+ ++V +L K+ L+KP+ + + + TLT+E +R+
Sbjct: 314 ECLTIIQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRV 373
Query: 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQ 408
E +EA LL+ C+K FT + +IF K+ AHR+ +L GL +K AELHGNL+Q Q
Sbjct: 374 --TSEQQREATLLAACTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQ 431
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
R++AL F LI TD+AARGLD+ V+TVIN+ P D+T YVHRVGRTARAG G
Sbjct: 432 RVKALADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASG 491
Query: 469 YAVTFVTDNDRSLLKAIAKRAGSKLK-------------SRIVAEQSITKWSKIIEQMED 515
+VT T + +K IAK+ + +K R V + + + I + ED
Sbjct: 492 TSVTMYTPGEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKITESED 551
Query: 516 QVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 559
+V I+QEE ER LR A++ A K +NM H++EI RP++ W
Sbjct: 552 KVKQIMQEESVERELRLADVMAKKVDNMKTHRKEIDRRPRQQWI 595
>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571, partial [Aureococcus
anophagefferens]
Length = 545
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 216/501 (43%), Positives = 279/501 (55%), Gaps = 56/501 (11%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A A +F EL L R LLRA ALG+S+PT IQ +PLAL GRD+C SA TGSGKTAAF
Sbjct: 46 AGGGAINFDELGLCRCLLRAVAALGFSRPTAIQERVVPLALAGRDVCASAATGSGKTAAF 105
Query: 180 ALPTLERLLYRPKRI---PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS- 235
LP LER++ R K P IR +IL PTRELA Q M+ + QF+ LVVGG
Sbjct: 106 GLPLLERVV-RAKAAHGKPTIRGVILLPTRELAAQCEEMVRGLGQFSGADVALVVGGAKD 164
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
K+QE ALR PD+VVATPGR++DHL N V LDD+ +LDEADRLLELGF E+ +L
Sbjct: 165 VKVQELALRRKPDVVVATPGRLLDHLTNGRGVHLDDVECCVLDEADRLLELGFEDELRQL 224
Query: 296 VRLCPKR------------RQTMLFSATLTEDVDELIKLSLTKPLRL---SADPSAKRPS 340
+ P RQTMLFSAT V+ L LSL +P+R+ S + +
Sbjct: 225 LGALPGGSERGKGGRGSGTRQTMLFSATFGAKVESLAALSLVRPVRVRVASGHGAGGVAA 284
Query: 341 TLTEEVVRIR----RMREVNQEAVLLSLCSKTF--TSKVIIFSGTKQAAHRLKILF---- 390
LT++ VR++ R + +EA LL+L ++T S+ ++F TK A R+ L
Sbjct: 285 KLTQDFVRLKAAEGRAEDAEREATLLALLTRTVDPASQAVVFFDTKAATRRVGALLEALR 344
Query: 391 ------GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444
G A A ELHG L QAQR L F + L+ TDVAARGLD+ GV V+N
Sbjct: 345 ARGGLSGHALPPATELHGGLRQAQRDANLARFERGDAGILLCTDVAARGLDLAGVGAVVN 404
Query: 445 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---------------- 488
+ PR + +YVHRVGRTARAGR G+AVT V R LK +
Sbjct: 405 FEMPRTVATYVHRVGRTARAGRSGHAVTLVGPQRRQALKEFLRSRTAQLDAARDAGDAGA 464
Query: 489 ----AGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
+ L+SR V + +W + E VA +L +R L +A +A +AEN++
Sbjct: 465 AAELESAGLRSRAVPPAVLAEWRDAVGAAEADVAGLLALAAADRELSRAAEDAQRAENLL 524
Query: 545 AHKEEIFARPKRTWFVTEKEK 565
H +I ARPKR WF + K+K
Sbjct: 525 VHGADIAARPKREWFQSSKQK 545
>gi|403223642|dbj|BAM41772.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 567
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/469 (40%), Positives = 290/469 (61%), Gaps = 32/469 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ + +L + LL+A LGY PT IQ IPLAL G+D+ +A TGSGKTA+F +PTL+
Sbjct: 72 NWSDFSLCKSLLKAIYELGYEHPTLIQTKVIPLALEGKDLLVTAETGSGKTASFVIPTLQ 131
Query: 186 RLL------------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 233
RL+ Y +VL++ PTRELA Q + + + ++++ L+ GG
Sbjct: 132 RLVASGFIKQRTKDNYTHGLRHGTKVLVILPTRELAAQCYEVYKSLSKYLTTNAALLTGG 191
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293
+ K QE L+ +PD ++ TPGR +D L NS S++++++ V+I+DEAD+LLELGF E+
Sbjct: 192 IPIKEQENKLKQIPDTIICTPGRALDMLLNSSSINVENIEVVIMDEADKLLELGFRDEVR 251
Query: 294 -----ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348
++ C + RQTMLFSATLTE+ EL+ LS+T P+ + D K TL E++
Sbjct: 252 PKRKSKMKNFCNRNRQTMLFSATLTEETKELVNLSMTNPVYVKVDEPTKVSKTLEFEMLM 311
Query: 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
I + E +EA + LC+K K I+F TK+AAHR+ ++F L LK AELHGNL+Q++
Sbjct: 312 IPK--EEYREACAVYLCTKYCKEKTILFFQTKRAAHRMYLIFKLMKLKCAELHGNLSQSK 369
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
R E++E F+K VD+L+A+++A+RGLDI G++TVIN P D+T Y+HRVGRTAR G G
Sbjct: 370 RFESVEKFKKSEVDYLLASELASRGLDIPGIKTVINVDLPTDITRYIHRVGRTARMGSSG 429
Query: 469 YAVTFVTDNDRSLLKAIAKRA---GSKLKS--RIVAEQSITKWSKIIEQMEDQVAAILQE 523
A+T D RS +K K+ GSK ++ R VA + K+ I ++E+++ IL
Sbjct: 430 KAITLYVDEQRSQVKLFLKKTSTLGSKYENNKRKVASGILNKYKNSIAELEEKIKEILLN 489
Query: 524 EREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKAD 572
E+ E+ ++K + + +N+ + E KR WF + KEKK A K +
Sbjct: 490 EKIEKDIKKID---STMKNVEGKETE-----KRKWFRSIKEKKSASKQE 530
>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
Length = 1234
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 204/493 (41%), Positives = 304/493 (61%), Gaps = 15/493 (3%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF + R LL+A +G++ PTPIQ A IP+A+TGRDIC A TGSGKT AF LP L
Sbjct: 103 DSFADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPIL 162
Query: 185 ERLLYR-PKRIPA-IRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQET 241
+R R P ++ + RVL+L PTREL VQV ++ K +A+ ++ GGL Q
Sbjct: 163 QRFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQ 222
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR PDI+VATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F++++ E++ K
Sbjct: 223 VLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCK 282
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQTMLFSAT+T+ V EL ++LTKP+++ + L ++ VRIR RE ++EA++
Sbjct: 283 TRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMV 342
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L +K+ +I++ T++ AHR+ IL GL LK ELHG+++Q RLEAL F+
Sbjct: 343 AAL-NKSLRMLLILYQ-TRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTA 400
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
++ TDVAARGLDI V+TVIN P + SYVHRVGRTARAG++G +++ V +++ +
Sbjct: 401 HIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKI 460
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
LK I K + + K+R +A + +T + + + E +V I+ E EE L E + A+
Sbjct: 461 LKMIIKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAK 520
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKKLAVKAD---KASIEKGKGSGNEVTSAQQAEDLKIK 598
N + E KR WF T+ E++L KAD K I+ G Q+A+ + +
Sbjct: 521 NKVIRPNE-----KRGWFQTKYERELE-KADRMLKNKIDTNTPEGRAQLEMQKADAFRHR 574
Query: 599 EKRKREREKNLPR 611
E+ KRE++ N R
Sbjct: 575 EQ-KREKKGNRVR 586
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 293/470 (62%), Gaps = 12/470 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF + R LL+A +G++ PTPIQ A IP+A+TGRDIC A TGSGKT AF LP L
Sbjct: 652 DSFADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPIL 711
Query: 185 ERLLYR-PKRIPA-IRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQET 241
+R R P ++ + RVL+L PTREL VQV ++ K +A+ ++ GGL Q
Sbjct: 712 QRFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQ 771
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR PDI+VATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F++++ E++ K
Sbjct: 772 VLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCK 831
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQTMLFSAT+T+ V EL ++LTKP+++ + L ++ VRIR RE ++EA++
Sbjct: 832 TRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMV 891
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L +K+ +I++ T++ AHR+ IL GL LK ELHG+++Q RLEAL F+
Sbjct: 892 AAL-NKSLRMLLILYQ-TRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTA 949
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
++ TDVAARGLDI V+TVIN P + SYVHRVGRTARAG++G +++ V +++ +
Sbjct: 950 HIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKI 1009
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
LK I K + + K+R +A + +T + + + E +V I+ E EE L E + A+
Sbjct: 1010 LKMIIKASKTSCKTRTLATEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQVNAAK 1069
Query: 542 NMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQ 591
N + E KR WF T+ E++L KAD+ ++ G N T +Q
Sbjct: 1070 NKVIRPNE-----KRGWFQTKYERELE-KADRM-LDAHSGIRNRNTRGKQ 1112
>gi|209882552|ref|XP_002142712.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558318|gb|EEA08363.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 555
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 216/530 (40%), Positives = 302/530 (56%), Gaps = 49/530 (9%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L LSRP+L+A L + PTPIQ IPLAL GRDI A TGSGKTAAF LPT+ERLL
Sbjct: 6 LELSRPILKALNDLNFVNPTPIQKEVIPLALAGRDILAEAETGSGKTAAFLLPTIERLLK 65
Query: 190 RP-----KRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 235
P K P A +VLIL P+RELA+Q ++E + ++ I C+V GG+S
Sbjct: 66 FPGIRARKMSPLGPTGGLNATKVLILLPSRELAMQCFDVLESLIKYCLIITRCIVTGGMS 125
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
E LRS PDIV+ATPGR++D L N+M V L+ L ++ILDEADRLL++GF E E+
Sbjct: 126 QSQHEVTLRSQPDIVIATPGRILDMLINTMGVHLELLEIVILDEADRLLDMGFRRECLEI 185
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR----------------- 338
+R + RQTMLFSATL+ V +L L+L P R+S +
Sbjct: 186 LRYVSQCRQTMLFSATLSRGVTDLALLTLRNPCRISTIGLGRNAILSNTEGITSDVSTIG 245
Query: 339 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
+TL +E V + E ++E L + SK +T +VI+F TK+ A R+ IL + A
Sbjct: 246 LSTTLNQEFVELNE--EKDREGALFHILSKIYTERVIVFFQTKKEARRISILCNILGFSA 303
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG LTQ +R E L F K L+A+++AARGLDI G+ VIN+ P + + Y+HR
Sbjct: 304 VELHGYLTQEKRNENLARFTKGESKILLASELAARGLDIKGITAVINFTLPLEASRYIHR 363
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK-------------LKSRIVAEQSIT 504
VGRTAR G G ++T + ++RS LK++ K+ K +K + +I+
Sbjct: 364 VGRTARIGENGNSITLYSQSERSRLKSLMKQVLRKSGSSSSTTKLCNLMKKLKFSSNNIS 423
Query: 505 KWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
WS+ I + E +V ++ E+ LR AE+EA KAEN++ HKE I RP++ WF + +
Sbjct: 424 YWSERILESEPKVKQQIRANIAEKELRLAELEANKAENILIHKENISGRPRKKWFQSTLQ 483
Query: 565 KKLAVKADKAS-IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKN-LPRK 612
K++A K IEK NE+ L +++K +E+N L RK
Sbjct: 484 KEIAKDLSKRELIEKAGFDLNELNDITCKGLLLNSDRKKNPKEQNHLKRK 533
>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
Length = 564
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/415 (40%), Positives = 261/415 (62%), Gaps = 1/415 (0%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L++ L++AC GY+ PT +QA IP+ + G+D+ S+ TGSGKTAAF LP ++R
Sbjct: 118 FHQLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQR 177
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
K + + LI+ PTRELA+Q M EK+ ++ + LV+G + + QET LR
Sbjct: 178 F-GNLKNLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRKY 236
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR +D L NS S+++ ++ +L+ DEADRL+E+GF EI ++++ K RQT+
Sbjct: 237 PDIIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQTV 296
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
L SATL V +L L+L P++++ D L + ++RIR ++ ++EA L++L
Sbjct: 297 LISATLNATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQDSDREATLITLLK 356
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
F K IIF TK HRL I+ G + + ELHGNL+Q QR++A E F++ FL+A
Sbjct: 357 TKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFLLA 416
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TD+AARGLD+ V+ VINY P ++T Y+HRVGRTAR G +G +VT +N+ K +
Sbjct: 417 TDLAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVKFKKMI 476
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAE 541
+++ +L I + + + I+Q+E Q+ +++EE E +RK EM K E
Sbjct: 477 RQSKQQLFKMIADTNKVRQMRRQIQQLEPQIRKVIKEEVAEMEVRKTEMMTQKGE 531
>gi|156379137|ref|XP_001631315.1| predicted protein [Nematostella vectensis]
gi|156218353|gb|EDO39252.1| predicted protein [Nematostella vectensis]
Length = 298
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/295 (54%), Positives = 221/295 (74%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+NLSRPLL+A LG+ PTPIQA+ IP+AL G+D+C A TG+GKTAAF LP LERLLY
Sbjct: 1 MNLSRPLLKAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLY 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
RP + PAIRVL++TPTRELA+Q+HS+ ++++T+I+ CL GGL K QE ALR PDI
Sbjct: 61 RPTQSPAIRVLVITPTRELAIQIHSVTNNLSKYTNIQVCLAAGGLDLKSQEAALRKNPDI 120
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
V+ATPGR++DHL N+MS L + +L+LDEADR+L+ F +++E+++L P+ RQTMLFS
Sbjct: 121 VIATPGRLVDHLHNTMSFGLQSIEILVLDEADRMLDEHFRDQMNEIIKLSPRGRQTMLFS 180
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T++V+EL+ LSL +P+RL D + L +E +RIR RE ++ A++ +LCS+TF
Sbjct: 181 ATMTDEVEELVTLSLNQPVRLFVDSNTDVAYNLRQEFIRIRPNREEDRLAIVAALCSRTF 240
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ ++F TK AH+L+I+ GL L A ELHGNLTQ QRLEAL+ F+ VD L
Sbjct: 241 SDHCLVFLQTKWMAHKLRIVLGLMGLNADELHGNLTQLQRLEALQKFKNGEVDIL 295
>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
Length = 649
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 191/458 (41%), Positives = 284/458 (62%), Gaps = 28/458 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LSR L++A +GY P+ IQ+ IP+AL G+D+ +A TGSGK+AAF +PTL+
Sbjct: 126 NWSDLGLSRSLIKAVFDMGYKAPSIIQSKVIPVALEGKDLLATAETGSGKSAAFLIPTLQ 185
Query: 186 RLL----YRPKRIPAIR---------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RL+ + K + R LIL PTRELA Q + + + Q L+ G
Sbjct: 186 RLITAGVIKQKDVDLTRGGNQRVGTKALILLPTRELAAQCYDVFLALTQNLTQNGVLITG 245
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G+ K QE LR MP IV ATPG+++D + NS + +D + +++LDEADRLL+LGF E+
Sbjct: 246 GVPVKEQEAKLRRMPYIVFATPGKVLDIMLNSNCIHMDAIEIVVLDEADRLLDLGFKDEL 305
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
+++LC K RQTMLFSATLTE EL+ ++L P+ + A P TL E ++++
Sbjct: 306 AHILQLCNKERQTMLFSATLTEATKELVPVALVNPIYIKATPKITVAKTLKCENIQLKS- 364
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+ +EA L LCS+ +T K I+F TK+AAHR ++F LA LK+ ELHG+L QA+R E
Sbjct: 365 -DDLREAAALYLCSQRYTKKTILFFQTKRAAHRNALVFQLAGLKSGELHGDLAQAKRFEQ 423
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
+E F+ VDFL+A+++A+RGLDI G+ VIN P D ++HRVGRTAR G EG A+T
Sbjct: 424 IEKFKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVGRTARMGEEGTAIT 483
Query: 473 FVTDNDRSLLKAIAKR---AGSKL-KSRI-VAEQSITKWSKIIEQMEDQVAAILQEEREE 527
F T+ +RS +K++ K GS + K +I ++ ++ + IE+ME ++A +L E+ E
Sbjct: 484 FYTEKERSAIKSMMKSITDKGSNIDKQKIKLSGAALKNYKSKIEEMEPKIAELLAAEKVE 543
Query: 528 RILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ LR + EN I + R +R WF ++K+K
Sbjct: 544 KELR-------QCENAIKYGSSTEKR-ERIWFRSKKQK 573
>gi|402882297|ref|XP_003904684.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Papio anubis]
Length = 711
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 195/501 (38%), Positives = 281/501 (56%), Gaps = 72/501 (14%)
Query: 83 NDHSDSEFDQHE-DYKPEDEDDFSNAG--------------DTKSFFAPADGASFHAN-S 126
ND SE + E DY DE+ + A + FF D + + N S
Sbjct: 130 NDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKGQEAGGFFE--DASQYDENLS 187
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC + GK L L+
Sbjct: 188 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACCV---GKPMCLGLCGLDV 244
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
A +LI TP R
Sbjct: 245 KSQEAALRAAPDILIATPGR---------------------------------------- 264
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQTM
Sbjct: 265 ----------LIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 314
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++ +L +
Sbjct: 315 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 374
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+A
Sbjct: 375 RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVA 434
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK I
Sbjct: 435 TDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIV 494
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAH 546
K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ ++++E + A+ ++
Sbjct: 495 KAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEK 554
Query: 547 -KEEIFARPKRTWFVTEKEKK 566
KE + P+R WF T++E+K
Sbjct: 555 GKEAVVQEPERNWFQTKEERK 575
>gi|441639369|ref|XP_004090206.1| PREDICTED: probable ATP-dependent RNA helicase DDX27, partial
[Nomascus leucogenys]
Length = 786
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 271/457 (59%), Gaps = 62/457 (13%)
Query: 112 SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAI 170
FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A
Sbjct: 254 GFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAA 311
Query: 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TG+G + + E L A +LI TP R
Sbjct: 312 TGTG---GLDVKSQEAALR-----AAPDILIATPGR------------------------ 339
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
+IDHL N S L + VLILDEADR+L+ F
Sbjct: 340 --------------------------LIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 373
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 374 QMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 433
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRL
Sbjct: 434 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 493
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
EAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +
Sbjct: 494 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 553
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V+ V +++R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ E EE+ +
Sbjct: 554 VSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 613
Query: 531 RKAEMEATKAENMI-AHKEEIFARPKRTWFVTEKEKK 566
+++E + A+ ++ KE + P+R+WF T++E+K
Sbjct: 614 QQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERK 650
>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 515
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/396 (43%), Positives = 253/396 (63%), Gaps = 6/396 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL LS ++RA + + PTP+Q IP+AL GRD+C SA+TGSGKTAAF +PT+E
Sbjct: 17 SFEELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPTVE 76
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST-KMQETALR 244
RLL R +IL+PTRELA Q +S++ +I QFT + L+ GG S K +E L
Sbjct: 77 RLLRSKSTEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEEEERLL 136
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PD +V TPGR+IDH++N L+++ VL+LDE+DRLL+ GF ++I E+ + P+ Q
Sbjct: 137 EYPDFLVCTPGRIIDHIKNCEGFTLENVLVLVLDESDRLLQEGFYSQIEEVHKSLPETTQ 196
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++L +AT+ V L ++SL KP+R+ D K LT+E +R + ++A L++
Sbjct: 197 SILVTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGLTQEFIRCTKE---TRDATLVAC 253
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
CS+ T K +IF TK+ H L +LF + AEL G++TQ +R EA LF +FL
Sbjct: 254 CSRLCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRYEAHSLFAGGQAEFL 313
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI G++ VINY PR LT YVHRVGRTAR EG + +T++DR ++K+
Sbjct: 314 IATDVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRTIALITEDDREMMKS 373
Query: 485 IAKRAG--SKLKSRIVAEQSITKWSKIIEQMEDQVA 518
I +++ + + R + + I K I++++++VA
Sbjct: 374 IIEKSAESNPVSKRTIPDNVIEATQKKIDEVQEKVA 409
>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 570
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 185/465 (39%), Positives = 286/465 (61%), Gaps = 30/465 (6%)
Query: 126 SFMELNLSRPLLR---ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
++ + L R ++R A +GY PT IQ+ IPLAL G+D+ I GSGKTA+F +P
Sbjct: 76 NWSDFGLCRSIMRVGIAISEMGYQNPTIIQSKVIPLALEGKDLLIMMIQGSGKTASFLIP 135
Query: 183 TLERL--------LYRPKRIPAIRV----LILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
TL+RL L + K+ R L++ PTRELA Q + + ++++ + L+
Sbjct: 136 TLQRLVVSGVLKQLTKEKQAYNTRFGTKALVILPTRELAAQCFQVFKSLSKYLSSKAILL 195
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GG+ K QE LR P+ ++ TPGR +D L NS S++++++ V+I+DEAD+LLELGF
Sbjct: 196 TGGIPIKEQENRLRQFPETIICTPGRALDMLINSSSINVENIEVVIMDEADKLLELGFRD 255
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
E ++++ C + RQTMLFSATLTE+ EL+ LSL P+ + D K TL E++ I
Sbjct: 256 ECLQVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMIP 315
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+ E +EA L LC+K K I+F TK++AHR+ ++F L +K ELHGNL+Q++R
Sbjct: 316 K--EEYREACALYLCTKYSKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRF 373
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
E++E F+ +D+L+A+++A+RGLDI GV+TVIN P D+T Y+HRVGRTAR G G A
Sbjct: 374 ESVERFKNGEIDYLLASELASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHGKA 433
Query: 471 VTFVTDNDRSLLKAIAKRA---GSKL--KSRIVAEQSITKWSKIIEQMEDQVAAILQEER 525
+T D RS +K K+ G+ L + V ++ K+ I+++E+++ +L EE
Sbjct: 434 ITLYVDEQRSQVKLFLKKTSDIGATLSKNKKKVTSATLNKYKTKIDELEEKIKELLLEEN 493
Query: 526 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
E+ ++ +AT + H ++ R KR WF ++K+KK+A K
Sbjct: 494 IEKDIKMC--DAT----LKTHGDQ--DREKRKWFRSKKDKKMASK 530
>gi|429329858|gb|AFZ81617.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 562
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 285/473 (60%), Gaps = 31/473 (6%)
Query: 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFAL 181
+ ++ + + R +L A L +++PT IQ+ IP+AL G+DI +A TGSGKTAAF +
Sbjct: 67 YSNENWSDFRICRSILLAISDLEFTRPTIIQSRVIPIALEGKDILATAETGSGKTAAFII 126
Query: 182 PTLERLL-------------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
P L+RL+ +R + L+L PTRELA Q + +++ + +F +I
Sbjct: 127 PMLQRLVLSNVLTPKNGKFGFRNSTKDVTKALVLLPTRELAAQCYDVLKALTRFLNINDI 186
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288
L+ GG+ K QET L +P+++++TPGR +D L NS + LD + ++ILDEADRLLE+GF
Sbjct: 187 LLTGGIPIKEQETKLSRIPNVIISTPGRALDILLNSGRIHLDSVEIVILDEADRLLEMGF 246
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348
E +++ C K RQTMLFSATLTE+ +L+ LSL P+ + + S K TL E +
Sbjct: 247 RDECVNILKFCNKNRQTMLFSATLTEETKDLVNLSLVNPIYIKMEESTKVSKTLNFEAIM 306
Query: 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
I + +EA +L LC SK I+F TK++AHR+ ++F L + ELHG+L+Q +
Sbjct: 307 IP--SDELREACVLYLCETQCKSKCILFFQTKKSAHRMALIFKLLNMSCGELHGDLSQLK 364
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
R E+++ FR VD+L+A+++AARGLDI G+ TVIN P D+ Y+HRVGRTAR G G
Sbjct: 365 RFESVQKFRNGEVDYLLASELAARGLDIPGIDTVINVHLPTDVVRYIHRVGRTARMGSHG 424
Query: 469 YAVTFVTDNDRSLLKAIAKRAGSKLKS-----RIVAEQSITKWSKIIEQMEDQVAAILQE 523
A++ + +++ +K + K+ + K+ R V + K+S+ IE EDQ+ IL
Sbjct: 425 KAISVYIEEEKAKMKVLLKKTSNIDKNLGKYKRRVPLGVLKKYSEKIEAFEDQINEILIN 484
Query: 524 EREERILRKAE--MEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 574
ER E+ +R + +++ K +N A KR WF + K+KK+A K + A
Sbjct: 485 ERIEKEIRLCDNSLKSAKDDN---------ATGKRQWFRSLKDKKIASKIEFA 528
>gi|226500380|ref|NP_001141931.1| uncharacterized protein LOC100274080 [Zea mays]
gi|194706482|gb|ACF87325.1| unknown [Zea mays]
gi|414589948|tpg|DAA40519.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 337
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 170/234 (72%), Positives = 207/234 (88%), Gaps = 1/234 (0%)
Query: 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454
+KAAELHGNLTQAQRLEALELF+K+ VDFLIATDVAARG+DI+GVQTVIN+ACPRD+ +Y
Sbjct: 1 MKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTY 60
Query: 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 514
+HRVGRTARAGREGYAVTFVTD+DR LLKAIAK+AGS+LKSRIVAE+ + + +++IEQ+E
Sbjct: 61 LHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIVAEKPVAECARLIEQLE 120
Query: 515 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 574
Q++ I++EER ER RKAEME KAENMIAHK+EI++RPKRTWF TE+EKKL A K
Sbjct: 121 GQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWFATEREKKLLAAAAKE 180
Query: 575 SIEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERRKLEAAREMLEDED 628
S++ GK + V SA++AEDL++KEKR+RE EKNLPRK+RR+LEA REMLEDED
Sbjct: 181 SLDHGKSTSG-VISAKKAEDLRLKEKRRREHEKNLPRKKRRRLEAQREMLEDED 233
>gi|67618387|ref|XP_667590.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis TU502]
gi|54658742|gb|EAL37362.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis]
Length = 543
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 281/476 (59%), Gaps = 52/476 (10%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 190 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLS 235
P R+ ++ +VL+L P+RELA+Q ++E + ++ I +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 338
++ + RQTMLFSATL+ V +L L+L P ++S A S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSAGSSGESELLSITG 244
Query: 339 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 499
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTQSERSQLKALMKQVLRAGNKSSVAGRDKKENVSSIMKKRTLA 422
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|397630447|gb|EJK69772.1| hypothetical protein THAOC_08936 [Thalassiosira oceanica]
Length = 544
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 191/437 (43%), Positives = 256/437 (58%), Gaps = 54/437 (12%)
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
D C V L Q LR+ PD+VVATPGR++DH+ NS VDLDDL L+LDEADRL
Sbjct: 7 DRECMSHVSLLRCTYQAAELRTRPDVVVATPGRILDHVTNSQGVDLDDLEFLVLDEADRL 66
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST-- 341
L+LGF E+HE+ + CP RQT+LFSATL VDELIKL L +P+R+SA K
Sbjct: 67 LDLGFQDEVHEIFKACPSERQTLLFSATLGTKVDELIKLGLKRPVRISATDKNKGGDAGP 126
Query: 342 ----------LTEEVVRIRRMRE-VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390
L +E VRIR E VN+E +LL+L ++TFTSK + F TK AAHRL I+
Sbjct: 127 GGAGVEVAPRLEQEFVRIRSGNEGVNREGMLLALLTRTFTSKTMCFFDTKVAAHRLMIIC 186
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
GL +K AELHGNLTQ QRLEALE FR+ VD L+ TD+AARGLDI V+ V+N+ P
Sbjct: 187 GLCGIKCAELHGNLTQTQRLEALEAFREGSVDVLLCTDLAARGLDITCVEAVVNFEMPSQ 246
Query: 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK-----------LKSRIVA 499
+ +YVHR+GRTARAGR G A T + + R L+K + K A K ++SR +
Sbjct: 247 VATYVHRIGRTARAGRGGKACTLIGEGRRYLMKEVMKDAEEKARKQKEGTAGVIRSRTIP 306
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWF 559
++ + I +ED + +L E R+ R EME +A+N+I H +EI +RP++ WF
Sbjct: 307 AAVVSHFVAKINSLEDNIKEVLDAEAVARLDRITEMEMMRAQNIIEHSDEIKSRPQKEWF 366
Query: 560 VTEKEKKLAVKADKAS----IEKGKGSGNEVTSAQQAEDLKIKEKRKREREKNLPRKERR 615
T K+ K+++K A +E+ G+G + RK+RR
Sbjct: 367 ATSKQ-KISIKEKTAERKRRLEEQTGTGTH----------------------RMSRKKRR 403
Query: 616 KLEA---AREMLEDEDQ 629
EA A EM+E E++
Sbjct: 404 LNEAREMAHEMMEQEER 420
>gi|66475988|ref|XP_627810.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
gi|46229323|gb|EAK90172.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
Length = 573
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 35 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 94
Query: 190 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLS 235
P R+ ++ +VL+L P+RELA+Q ++E + ++ I +V GG++
Sbjct: 95 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 154
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 155 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 214
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 338
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 215 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 274
Query: 339 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
STL +E + I +E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 275 LSSTLEQEFLEI--TKEEEREGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 332
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 333 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 392
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 499
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 393 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 452
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 453 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 508
>gi|32399059|emb|CAD98299.1| DEAD/DEAH box RNA helicase, possible [Cryptosporidium parvum]
Length = 543
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 190 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLS 235
P R+ ++ +VL+L P+RELA+Q ++E + ++ I +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 338
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 244
Query: 339 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 499
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 422
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|156096011|ref|XP_001614040.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148802914|gb|EDL44313.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 737
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 205/578 (35%), Positives = 322/578 (55%), Gaps = 59/578 (10%)
Query: 118 DGASFHANS--------FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
DG + H +S + +L +SRP L+ ++ PT IQ IPLAL G+ I ++
Sbjct: 89 DGPNDHDSSSVIDRNTLWSDLYISRPFLKVLYEGKFNNPTFIQRDVIPLALEGKSILANS 148
Query: 170 ITGSGKTAAFALPTLERLL---------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220
TGSGKT AF LP LERLL Y P+ + + LIL PTRELA+Q + +++ +
Sbjct: 149 ETGSGKTLAFVLPILERLLHSPNIKMRSYNPRSVCVTKSLILLPTRELALQCYDVVKSMT 208
Query: 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280
++ I L GG+ K QE + DI + TPGR++D L NS S ++ L V++ DEA
Sbjct: 209 KYVSITYSLFCGGIDVKQQEYEYKKKKDIFICTPGRILDLLLNSSSDFINYLEVVVFDEA 268
Query: 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-- 338
D+LLELGF E +++ +C ++Q + FSATLT D+ EL SL P+ + + ++
Sbjct: 269 DKLLELGFKEECLKVLDVCKFKKQILFFSATLTRDIKELANFSLKNPIFIQSGVDNRKVD 328
Query: 339 ------PSTLT-EEVVRIRRMRE-VNQE-----------AVLLSLCSKTFTSKVIIFSGT 379
PS ++ +++++ ++ E +NQE A LL LCS + + IIF T
Sbjct: 329 AKGEVIPSYVSNKKILKSFKISEKLNQEFVNIVNEKYRRAALLHLCSNVYKNHAIIFFKT 388
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K+ H + ++F L K AELHG+LTQ +R+E++ F+K VDFL+ T++A+RGLDI +
Sbjct: 389 KKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKFKKNEVDFLLCTELASRGLDIDHI 448
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS----LLKAIAKRAGSKLKS 495
VINY P ++ YVHR+GRTAR G++G A T N+++ ++K + K +K+
Sbjct: 449 LYVINYNLPSNVIKYVHRIGRTARIGKDGTASTLYRPNEKADVKKIIKGLKKSKNAKIFR 508
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
R ++ SI+ W ++ + + ++ +++EE+E + + KA K +N+I K+EI +RP
Sbjct: 509 RNISSDSISHWDDLLRKKKKKIKEMIKEEKENKEIDKATKSIEKIKNLIQFKDEIMSRPP 568
Query: 556 RTWFVTEKEK----KLAVKADKASIEKG----KGSGNEVTS-----AQQAEDLKIKEKRK 602
R WF+T KEK KL +K+D + + G G G+ S + D + RK
Sbjct: 569 REWFLTNKEKLRLRKLNMKSDMSCGDSGGEDHTGGGSPRKSDSDKKGARKNDTGKQRARK 628
Query: 603 REREKNLPRKERRKLEAAREMLEDEDQVDKLQVCNCIV 640
R+ K RK +RK + E ED KL+ I+
Sbjct: 629 RDSGKQNTRKAKRKSRNSDE----EDDRSKLKSYRSII 662
>gi|323509459|dbj|BAJ77622.1| cgd6_4830 [Cryptosporidium parvum]
Length = 532
Score = 328 bits (841), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 52/476 (10%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L LSRPLL+A L + + T IQ IPLAL+GRDI A TGSGKTAAF LP LERLL
Sbjct: 5 LELSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLR 64
Query: 190 RP----KRIPAI---------RVLILTPTRELAVQVHSMIEKIAQFTDIRC-CLVVGGLS 235
P R+ ++ +VL+L P+RELA+Q ++E + ++ + +V GG++
Sbjct: 65 SPYVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMN 124
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
+ QE L+ P IV+ATPGR++D L N++S+ L+ L ++ILDEADRLL++GF E E+
Sbjct: 125 IQQQERILKCQPHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLDMGFRQECLEI 184
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS----------ADPSAKR------- 338
++ + RQTMLFSATL+ V +L L+L P ++S S +
Sbjct: 185 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKVSTVGLKSGIKSVGSSGESELLSITG 244
Query: 339 -PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
STL +E + I + E +E L + +K FT +VI+F TK+ AHR IL + L +
Sbjct: 245 LSSTLEQEFLEITKEEE--REGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSS 302
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG L Q +RLE F+ VD L A+++AARGLD+ V VIN+ P + + Y+HR
Sbjct: 303 TELHGFLPQEKRLENFSKFKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHR 362
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAK---RAGSK---------------LKSRIVA 499
VGRTAR G +G +T T ++RS LKA+ K RAG+K +K R +A
Sbjct: 363 VGRTARIGSKGNCITIYTRSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLA 422
Query: 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPK 555
+I +W + I E QV ++ + E+ LR AEM+ KA+N++ HK++I +RP+
Sbjct: 423 TNNINQWVEKISNSEKQVKDAIKADITEKELRIAEMQVNKAQNILLHKKDIESRPR 478
>gi|159114905|ref|XP_001707676.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157435783|gb|EDO80002.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 625
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 193/525 (36%), Positives = 298/525 (56%), Gaps = 55/525 (10%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ L+LSR L RA LG+ PT +Q IP+ L GRD SA+TGSGKT AF +P LE
Sbjct: 2 SWQGLSLSRQLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLE 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
R++ R + LIL+PTRELA Q ++++++A FT+ R L++GG T Q LR+
Sbjct: 62 RMILRGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRT 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT
Sbjct: 122 EPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPVARQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE------ 354
+LFSAT+ ++V L+L KPL++ DP T+T+E V I R+ E
Sbjct: 182 LLFSATMEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMITPTLLRKCTEKFKGED 241
Query: 355 ----------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG-------- 391
+ ++ +L+SL F+S K+++F +K+ R+ IL
Sbjct: 242 SSLKSSTLSAIARDILLVSLLRNNFSSEDGQHKIMVFCNSKREVRRVFILLDMLSKPPED 301
Query: 392 ------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
LA ++ + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y
Sbjct: 302 AARSCLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQY 361
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA-----KRAGSKLKSRIV 498
P L ++HRVGRT RA G ++TFV DN ++++LK I + G L+ R +
Sbjct: 362 DFPLSLDVHIHRVGRTGRADAPGTSITFVHDNAQEQNVLKEIQDSQKERAKGQPLRQRKI 421
Query: 499 AEQSITKWSK--IIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
+ IT + + + D++ + E ++ E++ KAEN++ K+EIF+RPK+
Sbjct: 422 DSKLITTITHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKDEIFSRPKK 481
Query: 557 TWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
TWF TE EK ++A A + G +T+ + DL +E++
Sbjct: 482 TWFQTEAEKA-NLRALHARVVSG-----AITNKEAVRDLSKEEQK 520
>gi|308160612|gb|EFO63089.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 625
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/489 (37%), Positives = 282/489 (57%), Gaps = 49/489 (10%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ L+LSR L RA LG+ PTP+Q IP+ L GRD SA+TGSGKT AF +P LE
Sbjct: 2 SWQGLSLSRQLTRAVLRLGWKFPTPVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLE 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
R++ R + LIL+PTRELA Q ++++++A FT+ R L++GG T Q LR+
Sbjct: 62 RMILRGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTARQAAQLRT 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT
Sbjct: 122 EPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICALCPIARQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE------ 354
+LFSAT+ ++V L+L KPL++ DP T+T+E V + R+ E
Sbjct: 182 LLFSATIEKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPTLLRKCTEKFKNED 241
Query: 355 ----------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG-------- 391
+ ++ +L++L F+S K+++F +K+ R+ IL
Sbjct: 242 SSLKSSTLSAIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLSKQPED 301
Query: 392 ------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
LA ++ + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y
Sbjct: 302 TTRSCLLAGIRPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQY 361
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA-----KRAGSKLKSRIV 498
P L ++HRVGRT RA G ++TFV DN ++ +LK I + G L+ R +
Sbjct: 362 DFPLSLDIHIHRVGRTGRADAPGTSITFVHDNSQEQGVLKEIQDSQKERAKGQPLRQRKI 421
Query: 499 AEQSITKWSK--IIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
+ IT + + + D++ + E ++ E++ KAEN++ K+EIF++PK+
Sbjct: 422 DSKLITTVTHYFVHNSVPDKLKRRVDRMNLEMAVKMEEIKIKKAENIMEFKDEIFSKPKK 481
Query: 557 TWFVTEKEK 565
TWF TE EK
Sbjct: 482 TWFQTEAEK 490
>gi|361126045|gb|EHK98061.1| putative ATP-dependent RNA helicase drs1 [Glarea lozoyensis 74030]
Length = 678
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 236/362 (65%), Gaps = 24/362 (6%)
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
K+A TDI+ CL VGGLS K+QE LR PD+++ATP +L
Sbjct: 263 KLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATP---------------------VL 301
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEADR+LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L +P+R+ D +
Sbjct: 302 DEADRMLEAGFADELNEILTTIPKSRQTMLFSATMTSSVDNLIRVGLNRPVRILVDAQKQ 361
Query: 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
TL +E +R+R RE + LL LC+ +T +VI+F K+ AHR +++FGL+ LKA
Sbjct: 362 TVGTLIQEFIRLRPGRETKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARVIFGLSGLKA 421
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
ELHG+++Q QR+ ++E FR FL+ATD+A+RGLDI GV TVINY P+ Y+HR
Sbjct: 422 TELHGSMSQEQRIISVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHEIYLHR 481
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQME 514
VGRTARAGR+G A T + DR ++KA K G+K+ SR++ W++ +E+M+
Sbjct: 482 VGRTARAGRQGRACTLAAEPDRKIVKAAVKSGRSQGAKIVSRVIEAADADTWAEKVEEMQ 541
Query: 515 DQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKA 574
D++ IL+EE+E++ L + EM+ K ENMI H++EI RPKRTWF +E EK A KA +A
Sbjct: 542 DEIEEILKEEKEDKQLAQVEMQVRKGENMINHEDEIKGRPKRTWFESEVEKTAAKKAGRA 601
Query: 575 SI 576
+
Sbjct: 602 EL 603
>gi|253744998|gb|EET01115.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 625
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 190/525 (36%), Positives = 295/525 (56%), Gaps = 55/525 (10%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ L+LSRPL RA LG+ PT +Q IP+ L GRD SA+TGSGKT AF +P LE
Sbjct: 2 SWQGLSLSRPLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLLE 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
R++ R K L+L+PTRELA Q ++++++A FT+ R L++GG T Q LR+
Sbjct: 62 RMVLRGKDTYGTTALVLSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLRT 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI+VATPGR+ID +RN+++ LD + VL+LDE D++L++GF E+ E+ LCP RQT
Sbjct: 122 EPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGFHDELKEICTLCPVARQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-----RRMRE------ 354
+LFSAT+ ++V L+L KPL++ DP T+T+E V + R+ E
Sbjct: 182 LLFSATMQKEVLSFSLLALQKPLQVQIDPPRTVAQTITQEFVMVTPALLRKCTEKFRNED 241
Query: 355 ----------VNQEAVLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFG-------- 391
+ ++ +L++L F+S K+++F +K+ R+ IL
Sbjct: 242 SALKASTISTIARDILLVALLRNNFSSEDSQHKIMVFCNSKREVRRVFILLDMLTKQPED 301
Query: 392 ------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
L +K + LHG+ +Q +R L+ FR ++ L+ +DVA+RGLDI V VI Y
Sbjct: 302 TTRSCLLNGIKPSCLHGDSSQKERATELDRFRSGDINLLVCSDVASRGLDIENVTVVIQY 361
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIA-----KRAGSKLKSRIV 498
P L ++HRVGRT RA G ++TFV DN ++ +LK I + G L+ R +
Sbjct: 362 DFPLSLDIHIHRVGRTGRADMPGTSITFVHDNAQEQGVLKEIQDSQKERAKGQPLRQRKI 421
Query: 499 AEQSITKWSKII--EQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKR 556
+ I + + D++ + + E ++ E++ +AEN++ K+EIF RPK+
Sbjct: 422 DPKLIATVTHYFAHNSVPDRLKRRVDKMNLEMAVQMEEIKIKRAENIMEFKDEIFNRPKK 481
Query: 557 TWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAEDLKIKEKR 601
TWF TE EK ++A A + G +T+ + DL +E++
Sbjct: 482 TWFQTEAEKA-NLRALHARVVSG-----AITNKEAVRDLSKEEQK 520
>gi|389586602|dbj|GAB69331.1| DEAD/DEAH box helicase, partial [Plasmodium cynomolgi strain B]
Length = 633
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 191/518 (36%), Positives = 292/518 (56%), Gaps = 48/518 (9%)
Query: 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLL---------YRPKRIPAIRVLILTPTR 206
IPLAL G+ I ++ TGSGKT AF LP LERLL Y P+ I + LIL PTR
Sbjct: 4 IPLALEGKSILANSETGSGKTLAFVLPILERLLHSPNIKMRSYNPRSICVTKSLILLPTR 63
Query: 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266
ELA+Q + +++ + ++ I L GG+ K QE + DI + TPGR++D L NS S
Sbjct: 64 ELALQCYDVVKSMTKYVTITYSLFCGGIDVKQQEYEYKKKKDIFICTPGRILDLLLNSSS 123
Query: 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 326
++ L V++ DEAD+LLELGF E +++ +C ++Q + FSATLT D+ EL SL
Sbjct: 124 DFINYLEVVVFDEADKLLELGFKEECLKVLDVCKFKKQILFFSATLTRDIKELANFSLKN 183
Query: 327 PLRLSAD-----------------------PSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
P+ + + S K L +E V I + E + A LL
Sbjct: 184 PIFIQSGVDNRKVDAKGEVIPRCISNKKILKSFKISEKLNQEFVNI--VNEKYRRAALLH 241
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
LCS + + IIF TK+ H + ++F L K AELHG+LTQ +R+E++ F+K VDF
Sbjct: 242 LCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKFKKNEVDF 301
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS--- 480
L+ T++A+RGLDI + VINY P ++ YVHR+GRTAR G+EG A T N+++
Sbjct: 302 LLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKEGTASTLYRPNEKADVK 361
Query: 481 -LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATK 539
++K + K +K+ R ++ SI+ W ++ + + ++ +++EE+E + + KA K
Sbjct: 362 KIIKGLKKSKNAKIFRRNISNDSISHWDNLLRKKKKEIKEMIKEEKENKEIDKATKSIEK 421
Query: 540 AENMIAHKEEIFARPKRTWFVTEKEK----KLAVKADKASIEKGKG--SGNEVTSAQQAE 593
+N+I K+EI +RP R WF+T KEK KL +K+D + + G SG + T +
Sbjct: 422 IKNLIQFKDEIMSRPPREWFLTNKEKVHLRKLNMKSDMSCGDSTGGSRSGEDHTGGRSTR 481
Query: 594 DLKIKEKRKREREKNLPRKERRKLEAARE--MLEDEDQ 629
K ++R R+ + RK RK +A R+ ++D D+
Sbjct: 482 --KNDAGKQRARKNDADRKGARKNDADRKGARIKDSDK 517
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 184/451 (40%), Positives = 261/451 (57%), Gaps = 9/451 (1%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTP 150
+Q ++ P+ DD + D + + + A A +F +L + PL ACEALGY +PTP
Sbjct: 25 EQRQEQSPQ-TDDSATVVDAAAVPS-STAAEVPAKTFKDLGIVDPLCEACEALGYKQPTP 82
Query: 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210
IQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ + L+L PTRELA
Sbjct: 83 IQTQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLDKPQPLFG---LVLAPTRELAA 139
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD 270
Q+ E + +RC +VVGGL Q AL P +VVATPGR++DHL + L
Sbjct: 140 QIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKKPHVVVATPGRLLDHLEKTKGFSLR 199
Query: 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330
L L++DEADRLL+L F + ++++ P+ R+T LFSAT++ V+ L + SL PLR+
Sbjct: 200 SLKYLVMDEADRLLDLDFGPILDKILKFLPRERRTYLFSATMSSKVESLQRASLRDPLRV 259
Query: 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390
S S+KR T+ + + ++++ L+ L ++ IIF+ T A RL IL
Sbjct: 260 SV--SSKREKTVATLLQNPLIIPHMHKDVYLIYLVNEFAGQTTIIFTRTVNEAQRLSILL 317
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
+ A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V VINY P D
Sbjct: 318 RTLSFGAIPLHGQLSQSMRLGALNKFKAKSRDILVATDVAARGLDIPEVDLVINYDLPGD 377
Query: 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRIVAEQSITKWSK 508
+Y+HRVGRTARAGR G A++ VT D L I K A G KL + + + + +
Sbjct: 378 SMTYIHRVGRTARAGRSGRAISIVTQYDVELWMRIEKAALDGRKLPTYQPDREEVMVFKE 437
Query: 509 IIEQMEDQVAAILQEEREERILRKAEMEATK 539
+E+ + ++E E+R + A ++ K
Sbjct: 438 RVEEAQRVARNEMKELHEDRGKKGAVLKGRK 468
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 185/489 (37%), Positives = 273/489 (55%), Gaps = 22/489 (4%)
Query: 53 VSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKS 112
+S E+ + TSV+ KS ++ PI ++ + D D + D+ S G+ KS
Sbjct: 8 ISHENGAVKETSVEAPKAKS---KTEPIPKSN--EPSHDAGSDAESATVDNASREGNGKS 62
Query: 113 FFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
+F +L + L ACE LGY PTPIQ IPLAL RDI G A TG
Sbjct: 63 V----------VKTFRDLGIVDSLCDACERLGYKNPTPIQQEAIPLALQNRDIIGIAETG 112
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
SGKTAAFALP L+ LL +P+ + A L+L PTRELA Q+ E + +RC L++G
Sbjct: 113 SGKTAAFALPILQALLDKPQPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILG 169
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL Q AL P +VVATPGR++DHL + L +L L++DEADRLL++ F +
Sbjct: 170 GLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPIL 229
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRR 351
++++ P+ R+T LFSAT++ V+ L + SL PL++S S + STL + + I
Sbjct: 230 EKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSISSSKYQTVSTLVQNYIFIPH 289
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
M +++ L+ LC++ +IIF+ T R+ IL + A LHG L+Q+ RL
Sbjct: 290 M---HKDTYLIYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLG 346
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL FR + D L+ATDVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A+
Sbjct: 347 ALNKFRAKSRDILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAI 406
Query: 472 TFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
+FVT D + I G+KL + + + +E+ + +++ E+R +
Sbjct: 407 SFVTQYDLEIWLRIEAALGTKLTEYATEKDEVMVFKPRVEEAQRHAKNEMKQLLEDRGKK 466
Query: 532 KAEMEATKA 540
+ ++ K
Sbjct: 467 GSVLKGGKG 475
>gi|344249399|gb|EGW05503.1| putative ATP-dependent RNA helicase DDX27 [Cricetulus griseus]
Length = 486
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 231/336 (68%), Gaps = 1/336 (0%)
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGL K QE ALR+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F +
Sbjct: 16 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 75
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
+ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L +E +RIR
Sbjct: 76 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRP 135
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
RE ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLE
Sbjct: 136 NREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLE 195
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V
Sbjct: 196 ALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSV 255
Query: 472 TFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+L+ E EE+ ++
Sbjct: 256 SLVGEEERKMLKEIVKAAKAPVKARIIPQDVILKFRDKIEKMEKDVYAVLRLEAEEKEMQ 315
Query: 532 KAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
++E + A+ ++ KE P+R+WF T+ E+K
Sbjct: 316 QSEAQIDTAKRLLEKGKETADQEPERSWFQTKAERK 351
>gi|82794666|ref|XP_728531.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23484925|gb|EAA20096.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 487
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/440 (37%), Positives = 257/440 (58%), Gaps = 35/440 (7%)
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
+L++S+PLL+ L + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 48 DLHISKPLLKVLYELKFENPTYIQKDVIPLALEGKSILANSETGSGKTLAFVLPMLERLL 107
Query: 189 YRP---------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
Y P K I + L+L PTRELA+Q + +I + +++ I C L GG+ +K Q
Sbjct: 108 YSPNIKLRRENRKSICITKALVLLPTRELAMQCYEVINNLIKYSPITCSLFCGGIDSKEQ 167
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E + DI V TPGR++D L NS + ++ L ++I DEAD+LLELGF E +++ +C
Sbjct: 168 ENEYKKKKDIFVCTPGRILDLLLNSSNDFINFLEIVIFDEADKLLELGFKEECLKILDVC 227
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD--------------------PSAKRP 339
++Q + FSATL +D+ EL SL P+ + ++ S K
Sbjct: 228 KFKKQILFFSATLXKDIKELANFSLRNPIFIQSENKNKDNKSKENINTQINKNFKSFKIS 287
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
L +E + I + E ++A LL LC++ + IIF T++ H + IL L K E
Sbjct: 288 ENLHQEFLNI--INEKYRKATLLHLCNEVYKKNCIIFFKTRKETHLMYILLKLLNFKCEE 345
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
LHG LTQ +R+E++ F+ Q VDFL+ T++A+RG+DI ++ VINY+ P ++ YVHR+G
Sbjct: 346 LHGLLTQKKRVESILKFKNQQVDFLLCTELASRGIDIDHIKYVINYSLPANVVKYVHRIG 405
Query: 460 RTARAGREGYAVTFV----TDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 515
RTAR G+EG + TF +N + ++K + K SK+ R+++E+ I W I+++ +
Sbjct: 406 RTARIGKEGTSCTFFLPKEKENVKKIIKGVKKNNSSKIYKRVISEEKILHWDSIVKKNKK 465
Query: 516 QVAAILQEEREERILRKAEM 535
++ L+ E E+ + K+ +
Sbjct: 466 KMKEXLENENVEKEIEKSNI 485
>gi|340508005|gb|EGR33819.1| hypothetical protein IMG5_036350 [Ichthyophthirius multifiliis]
Length = 347
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 234/344 (68%), Gaps = 4/344 (1%)
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
QE LR PD++++TPGR+IDHLRNS VDLD+L +L+ DEAD+ LELGF +EI E+++
Sbjct: 4 QEAELRRFPDLIISTPGRLIDHLRNSKCVDLDNLEILVFDEADKQLELGFESEIKEILQN 63
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
C + RQT+LFSATL + V LI L+L KP+R+ + S LT+++++I E +E
Sbjct: 64 CSRDRQTLLFSATLNDSVQSLIDLALKKPVRIKINASNSTNDKLTQKMLKIPF--ENTRE 121
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
A LL++ +K + K +IF TK+ HR+ I+FGL L ELHGN+TQ QR++A F++
Sbjct: 122 ASLLAVAAKFYKDKTVIFFKTKKQCHRMAIIFGLFKLSVCELHGNMTQNQRIQAFTDFKE 181
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+L+ATD+AARGLDI G++ VINY P +++ Y+HRVGRTARAG+EG ++T T+ +
Sbjct: 182 GKYSYLMATDLAARGLDIQGLKAVINYELPTEVSRYIHRVGRTARAGKEGVSLTLGTEQE 241
Query: 479 -RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
+SL K + + S +K + E + + I+ +E ++ ++ EE+ ER LRKAEME
Sbjct: 242 LKSLKKMLKENQDSAMKKFSIPEDILKSYQDKIKGIEREIERVIDEEQAERQLRKAEMEM 301
Query: 538 TKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK-ASIEKGK 580
KAEN+I +++I +PK+TWF T +++ +A K AS++K +
Sbjct: 302 KKAENLIKFQDDILNKPKKTWFQTNQQRNQIREASKEASLQKKR 345
>gi|358254115|dbj|GAA54145.1| ATP-dependent RNA helicase DDX27 [Clonorchis sinensis]
Length = 586
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 218/354 (61%), Gaps = 28/354 (7%)
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI--PAIRVL 200
+ KP PIQ ACIP+AL DIC A TGSGKT AF LP LERL +P R L
Sbjct: 1 MSLEKPMPIQCACIPVALLNHDICACARTGSGKTFAFLLPILERLTKKPSGTARSITRAL 60
Query: 201 ILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID 259
+++PTRELAVQ+ + EK+ + IR L GGL QE +LR PD+V+ATPGR+ID
Sbjct: 61 VISPTRELAVQIFRVAEKLVAYCPKIRIQLAAGGLDLHTQEASLRLNPDLVIATPGRLID 120
Query: 260 HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319
HL N+ + +L + L+LDEAD+LL+ F +I E+V+ C ++RQT+LFSAT+TE V EL
Sbjct: 121 HLSNAPNFNLQQIEYLVLDEADKLLDEYFVEQISEIVKHCGRQRQTLLFSATMTESVKEL 180
Query: 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT 379
LSL P+++ + + L +E +RIR RE ++ A+L++L +TF+ + I+F T
Sbjct: 181 ATLSLKNPVQVFLNQTTAVAKRLQQEFIRIRPHREEDRAAILVALLVRTFSKRTIVFLPT 240
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR---------------------- 417
K+ HR+ IL L +ELHG++TQAQRLEAL F
Sbjct: 241 KKECHRMHILLSLIGHSCSELHGDMTQAQRLEALRRFSESVDSHPAESASGNTASTKPVE 300
Query: 418 ---KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
K VD L+ATD+AARGLDI VQT+INY P+ + YVHRVGRTARA G
Sbjct: 301 DVPKPQVDILLATDLAARGLDIPNVQTIINYNLPQTMKQYVHRVGRTARAANTG 354
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 245/414 (59%), Gaps = 14/414 (3%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEA 142
ND S E +++D P E+ + G T+ P+ + SF +L + PL ACEA
Sbjct: 73 NDDSSDEASENDDSTPTVEEA-TKEGQTE---LPSKEET-PTKSFRDLGIVEPLCEACEA 127
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
L + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ + L+L
Sbjct: 128 LKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFG---LVL 184
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA Q+ E + +RC +VVGGL Q TAL P IVVATPGR++DHL
Sbjct: 185 APTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRLLDHLE 244
Query: 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
+ L L L++DEADRLL+L F + ++++ P+ R+T LFSAT++ V+ L +
Sbjct: 245 KTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRA 304
Query: 323 SLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
SL PL++S S ++ STL + + I +++ L+ L ++ I+F+ T
Sbjct: 305 SLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANEFAGKTTIVFTRTVN 361
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
A R+ IL + A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V
Sbjct: 362 EAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDL 421
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKL 493
VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K A G KL
Sbjct: 422 VINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKL 475
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 169/424 (39%), Positives = 249/424 (58%), Gaps = 7/424 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG + SF +L + L AC+ LGY +PTPIQ IPLAL GRDI G A TGSGKTA
Sbjct: 55 DGGNPAPKSFRDLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETGSGKTA 114
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ LL +P+ + A L+L PTRELA Q+ E + +RC L++GGL
Sbjct: 115 AFALPILQALLDKPQPLFA---LVLAPTRELAAQITQAFEALGSLISLRCALILGGLDMV 171
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P +VVATPGR++DHL + L +L L++DEADRLL++ F + ++++
Sbjct: 172 QQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILK 231
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVN 356
P+ R+T LFSAT++ V+ L + SL PL++S S + +TL + + I M +
Sbjct: 232 FLPRERRTFLFSATMSSKVESLQRASLRDPLKVSISSSKYQTVATLVQNYLFIPHM---H 288
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
++ L+ LC++ +IIF+ T R+ IL + A LHG L+Q+ RL AL F
Sbjct: 289 KDTYLIYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKF 348
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
R + L+ATDVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A++ VT
Sbjct: 349 RAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQ 408
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
D + I G+KL + + + + +E+ + +++ +ER + + ++
Sbjct: 409 YDIEIWLRIEAALGTKLTEYALEKDEVMVFKPRVEEAQRHAKNEMKQLIDERGKKGSVLK 468
Query: 537 ATKA 540
K
Sbjct: 469 GGKG 472
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 245/414 (59%), Gaps = 14/414 (3%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEA 142
ND S E +++D P E+ + G T+ P+ + SF +L + PL ACEA
Sbjct: 97 NDDSSDEASENDDSTPTVEEA-TKEGQTE---LPSKEET-PTKSFRDLGIVEPLCEACEA 151
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
L + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ + L+L
Sbjct: 152 LKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFG---LVL 208
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA Q+ E + +RC +VVGGL Q TAL P IVVATPGR++DHL
Sbjct: 209 APTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRLLDHLE 268
Query: 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
+ L L L++DEADRLL+L F + ++++ P+ R+T LFSAT++ V+ L +
Sbjct: 269 KTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRA 328
Query: 323 SLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
SL PL++S S ++ STL + + I +++ L+ L ++ I+F+ T
Sbjct: 329 SLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANEFAGKTTIVFTRTVN 385
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
A R+ IL + A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V
Sbjct: 386 EAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDL 445
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKL 493
VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K A G KL
Sbjct: 446 VINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKL 499
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 223/369 (60%), Gaps = 5/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL
Sbjct: 113 ALMEKPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+
Sbjct: 288 NEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 486 AKRAGSKLK 494
G KLK
Sbjct: 408 EGALGKKLK 416
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 223/369 (60%), Gaps = 5/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL
Sbjct: 113 ALMEKPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+
Sbjct: 288 NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 486 AKRAGSKLK 494
G KLK
Sbjct: 408 EGALGKKLK 416
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 178/414 (42%), Positives = 244/414 (58%), Gaps = 14/414 (3%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEA 142
ND S E +++D P E+ + G T+ P+ + SF +L + PL ACEA
Sbjct: 73 NDDSSDEASENDDSTPTVEEA-TKEGQTE---LPSKEET-PTKSFRDLGIVEPLCEACEA 127
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
L + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ + L+L
Sbjct: 128 LKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFG---LVL 184
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA Q+ E + +RC +VVGGL Q AL P IVVATPGR++DHL
Sbjct: 185 APTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPHIVVATPGRLLDHLE 244
Query: 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
+ L L L++DEADRLL+L F + ++++ P+ R+T LFSAT++ V+ L +
Sbjct: 245 KTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRA 304
Query: 323 SLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
SL PL++S S ++ STL + + I +++ L+ L ++ I+F+ T
Sbjct: 305 SLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYLANEFAGKTTIVFTRTVN 361
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
A R+ IL + A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V
Sbjct: 362 EAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDL 421
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKL 493
VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L I K A G KL
Sbjct: 422 VINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNGRKL 475
>gi|70937865|ref|XP_739683.1| DEAD/DEAH box helicase [Plasmodium chabaudi chabaudi]
gi|56516861|emb|CAH80123.1| DEAD/DEAH box helicase, putative [Plasmodium chabaudi chabaudi]
Length = 451
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 241/406 (59%), Gaps = 30/406 (7%)
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
+L++SRPLL+ L + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 48 DLHISRPLLKVLYELKFENPTYIQKDVIPLALEGKSILANSETGSGKTLAFVLPMLERLL 107
Query: 189 YRP---------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
Y P K + + LIL PTRELA+Q + +I + +++ I C L GG+ K Q
Sbjct: 108 YSPNIKLRKENRKSVNITKALILLPTRELAMQCYDVINSLIKYSPITCSLFCGGIDPKEQ 167
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
E + DI V TPGR++D L NS + +D L ++I DEAD+LLELGF E +++ +C
Sbjct: 168 ENEYKKKKDIFVCTPGRILDLLLNSSNDFIDYLEIVIFDEADKLLELGFKEECLKILDVC 227
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD---------------PSAKRPSTLTE 344
++Q + FSATLT+D+ EL SL P+ + ++ S K L +
Sbjct: 228 KFKKQILFFSATLTKDIKELANFSLRNPIFIQSENKNKDDKNKQTNKNLKSFKISENLHQ 287
Query: 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
E + I + E ++A LL LC++ + + IIF T++ H + IL L K ELHG +
Sbjct: 288 EFLNI--INEKYRKATLLHLCNEVYKNHCIIFFKTRKETHLMYILLKLLDFKCEELHGLM 345
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q +R+E++ F+ Q VDFL+ T++A+RG+DI V+ V+NY+ P + YVHR+GRTAR
Sbjct: 346 SQKKRIESILKFKNQEVDFLLCTELASRGIDIDHVKYVVNYSLPASVVKYVHRIGRTARI 405
Query: 465 GREGYAVTFVT----DNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 506
G++G A TF +N + ++K + K SK+ R+++E+ I W
Sbjct: 406 GKKGTACTFFLPKEKENVKKIIKGVKKNNNSKIYKRVISEEKILHW 451
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 222/369 (60%), Gaps = 5/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ P+ LIL PTRELA Q+ E + ++RC ++VGG+ Q AL
Sbjct: 113 ALMENPQSFFG---LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T++ + + +++ L+ L
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYLFLPHKHKDIYLVYLL 287
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+
Sbjct: 288 NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 486 AKRAGSKLK 494
G KLK
Sbjct: 408 EGALGKKLK 416
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/412 (40%), Positives = 240/412 (58%), Gaps = 5/412 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 60 SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L
Sbjct: 120 ALMNKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDVYLVYLL 294
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/412 (40%), Positives = 240/412 (58%), Gaps = 5/412 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 60 SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L
Sbjct: 120 ALMNKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDVYLVYLL 294
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 448
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/291 (52%), Positives = 205/291 (70%), Gaps = 5/291 (1%)
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
+GF EI E+VR CPK+RQT+LFSATLT V+ L LS+ P RLSAD P L EE
Sbjct: 1 MGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPEHLIEE 60
Query: 346 VVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
V++++ + +EA L+++ S++F I+F+ TKQ AHRLKI+ GL+ +KA ELHG++T
Sbjct: 61 VLKLKPNQSAQKEAFLMAIVSRSFDKSTIVFTKTKQQAHRLKIIMGLSKVKAGELHGDMT 120
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QRL AL+ FR V LIATDVAARGLDI V VI+Y P+ L SY+HRVGRTARAG
Sbjct: 121 QTQRLAALDDFRTGRVTHLIATDVAARGLDIPSVDAVISYDAPKTLASYLHRVGRTARAG 180
Query: 466 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 525
++G A+TF+ ++DR L+K +AKR G+ LK+R+V + +W K IE ME+++ I EER
Sbjct: 181 KKGTALTFMEESDRKLVKTVAKR-GANLKARVVPGNIVAEWHKKIEVMEEKIVHINYEER 239
Query: 526 EERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK----KLAVKAD 572
ER L KAEMEA KA N++ H EI +RP +TWF +E+EK K AVKA+
Sbjct: 240 TERQLAKAEMEANKASNLLEHAAEIKSRPAKTWFQSEREKRDVQKQAVKAN 290
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/371 (45%), Positives = 226/371 (60%), Gaps = 9/371 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + PL ACEAL + KPTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 111 SFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQ 170
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC +VVGGL Q AL
Sbjct: 171 SLLEKPQ---PLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGK 227
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL + L L L++DEADRLL+L F + ++++ P+ R+T
Sbjct: 228 KPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRT 287
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL PL++S S ++ STL + + I +++ L+ L
Sbjct: 288 FLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHK---HKDVYLIYL 344
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ I+F+ T A R+ IL + A LHG L+Q+ RL AL F+ + D L
Sbjct: 345 ANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDIL 404
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P+D +Y+HRVGRTARAGR G A++ +T D L
Sbjct: 405 VATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLR 464
Query: 485 IAKRA--GSKL 493
I K A G KL
Sbjct: 465 IEKAALNGRKL 475
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/412 (40%), Positives = 239/412 (58%), Gaps = 5/412 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACEALGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 60 SFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 119
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q +L
Sbjct: 120 ALMNKPQSLFG---LILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGK 176
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 177 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 236
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T+ + + ++ L+ L
Sbjct: 237 YLFSATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQSYLFIPHKYKDIYLVYLL 294
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T RL IL + LHG L+Q+ RL AL FR + D L+
Sbjct: 295 NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILV 354
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A + VT D + I
Sbjct: 355 ATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRI 414
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
G KL V ++ + S + + + +++ E+R R A ++
Sbjct: 415 ENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKG 466
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 173/441 (39%), Positives = 251/441 (56%), Gaps = 10/441 (2%)
Query: 93 HEDYKPEDEDDFSNAGDTKSFF--APADGASFHAN---SFMELNLSRPLLRACEALGYSK 147
H + E ED FS++ +++ P + A SF +L + L AC++LGY
Sbjct: 11 HTPPQGEAEDGFSDSETSQASLQETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKA 70
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ + L+L PTRE
Sbjct: 71 PTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFG---LVLAPTRE 127
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LA Q+ E + +RC ++VGG+ Q AL P I+VATPGR++DHL N+
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGF 187
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
L L L++DEADRLL+L F + +++++ PK R+T LFSAT++ V+ L + SL+ P
Sbjct: 188 SLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNP 247
Query: 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
LR+S S+ + T++ + + +++ L+ L ++ VIIF+ T RL
Sbjct: 248 LRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLA 305
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
IL A LHG L+Q+ RL AL FR + + L+ATDVAARGLDI V V+NY
Sbjct: 306 ILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDL 365
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
P D +Y+HRVGRTARAG+ G A + VT D + + I G +L V ++ + S
Sbjct: 366 PSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEKEEVMVLS 425
Query: 508 KIIEQMEDQVAAILQEEREER 528
+ + + ++E E R
Sbjct: 426 DRVGEAQRHAITEMKELHENR 446
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 249/428 (58%), Gaps = 22/428 (5%)
Query: 59 RRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHE-DYKPEDEDDFSNAGDTKSFFAPA 117
RR+T+ + L+ S P + ND + ++ + +P+ S+ D+++
Sbjct: 5 RRKTSHSE----GGLKDASAPTLKNDVKSKKTEEKQLSSQPKQPPAPSSEADSETI---- 56
Query: 118 DGASFHAN------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAIT 171
D S N +F +L + L ACE LGY +PTPIQ IPLAL RD+ G A T
Sbjct: 57 DNGSKQGNNDAAPKTFADLGIVESLCEACERLGYKRPTPIQEQAIPLALQNRDLIGIAET 116
Query: 172 GSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
GSGKTAAFALP L+ LL +P+ + A L+L PTRELA Q+ E + +RC L++
Sbjct: 117 GSGKTAAFALPILQALLDKPQPLFA---LVLAPTRELAAQIAQAFEALGSMISLRCALIL 173
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GGL Q AL P ++VATPGR++DHL + L +L L++DEADRLL++ F
Sbjct: 174 GGLDMVQQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPI 233
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIR 350
+ ++++ P+ R+T LFSAT++ V+ L + SL PL++S S + STL + + I
Sbjct: 234 LEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSISTSKYQTVSTLVQHYIFI- 292
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
++++ L+ L ++ +IIF+ T R+ IL + A LHG L+Q+ RL
Sbjct: 293 --PHIHKDTYLIYLVNEFAGKTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARL 350
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
AL FR + L+ATDVAARGLDI V V+N+ P+D +YVHRVGRTARAG+ G+A
Sbjct: 351 GALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHA 410
Query: 471 VTFVTDND 478
++FVT D
Sbjct: 411 ISFVTQYD 418
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 212/355 (59%), Gaps = 6/355 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A SF EL + L ACE +GY PTPIQ+ IPLAL GRD+ G A TGSGKTAAFALP
Sbjct: 45 AKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPM 104
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ L+ P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 105 LQALMEAPQTLFG---LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIAL 161
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P I+VATPGR++DHL N+ L +L L +DEADRLL++ F + +++R+ P+ R
Sbjct: 162 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTR 221
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
T LFSAT++ V+ L + SL+ P+R+S + STL + I ++ L+
Sbjct: 222 HTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHK---HKNLYLVY 278
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ IIF+ T R+ + A LHG L+Q+ RL AL FR + D
Sbjct: 279 LLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDI 338
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI V V N+ P D +Y+HRVGRTARAG+ G A++FVT D
Sbjct: 339 LVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYD 393
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/441 (39%), Positives = 250/441 (56%), Gaps = 10/441 (2%)
Query: 93 HEDYKPEDEDDFSNAGDTKSFF--APADGASFHAN---SFMELNLSRPLLRACEALGYSK 147
H + E ED FS++ + + P + A SF +L + L AC++LGY
Sbjct: 11 HTPPQGEAEDGFSDSETSPASLEETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKA 70
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ + L+L PTRE
Sbjct: 71 PTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFG---LVLAPTRE 127
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LA Q+ E + +RC ++VGG+ Q AL P I+VATPGR++DHL N+
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGF 187
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
L L L++DEADRLL+L F + +++++ PK R+T LFSAT++ V+ L + SL+ P
Sbjct: 188 SLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNP 247
Query: 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
LR+S S+ + T++ + + +++ L+ L ++ VIIF+ T RL
Sbjct: 248 LRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLA 305
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
IL A LHG L+Q+ RL AL FR + + L+ATDVAARGLDI V V+NY
Sbjct: 306 ILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDL 365
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
P D +Y+HRVGRTARAG+ G A + VT D + + I G +L V ++ + S
Sbjct: 366 PSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEKEEVMVLS 425
Query: 508 KIIEQMEDQVAAILQEEREER 528
+ + + ++E E R
Sbjct: 426 DRVGEAQRHAITEMKELHENR 446
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 218/354 (61%), Gaps = 7/354 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACEALGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 57 SFKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQ 116
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 117 ALMDKPQSLFG---LVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 174 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL+ PLR+S S + STL + + I ++ L+ L
Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHK---YKDIYLVYL 290
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T RL IL A LHG L+Q+ RL AL FR + D L
Sbjct: 291 LNEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDIL 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A +FVT D
Sbjct: 351 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYD 404
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 242/427 (56%), Gaps = 5/427 (1%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
P+D S SF +L + L ACE+LGY PT IQA IPLAL GRD+ G A TGSGK
Sbjct: 37 PSDTQSTTRKSFKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGK 96
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFALP L+ L+ +P+ + L+L PTRELA Q+ +E + +RC ++VGG+
Sbjct: 97 TAAFALPILQALMDKPQSMFG---LVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMD 153
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + ++
Sbjct: 154 MVSQAIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKI 213
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 355
+++ PK R+T LFSAT++ V+ L + SL+ PLR+S S+ + T+ + +
Sbjct: 214 LKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVSI--SSNKYQTVATLLQNYLFIPHK 271
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
++ + L ++ VI+F+ T RL IL A LHG L+Q+ RL AL
Sbjct: 272 YKDIYFVYLLNEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGK 331
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
FR + + L+ATDVAARGLDI V V+NY P D +Y+HRVGRTARAG+ G+A + VT
Sbjct: 332 FRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVT 391
Query: 476 DNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEM 535
D + + I G ++ + S + + + ++E E R + A +
Sbjct: 392 QFDIEIWQRIEGALGKTFDEYKTEKEEVMVLSDRVSEAQRHAITEMKELHENRGKKGATL 451
Query: 536 EATKAEN 542
+ N
Sbjct: 452 RNRRTGN 458
>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 453
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/374 (43%), Positives = 232/374 (62%), Gaps = 4/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LNLS P+L+A +A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LE
Sbjct: 2 SFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLL P R R+L+LTPTRELA+QV + +F +RC ++GG+ + Q L
Sbjct: 62 RLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLA 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQ
Sbjct: 122 QPVDIIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LF+AT+ + + +L + L P+R++ + + + + + MR N+ +L L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S +K IIFS TK+ A +L AA LHG+++Q R + + + R+ V L
Sbjct: 239 VSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ L
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDR 358
Query: 485 IAKRAGSKLKSRIV 498
I + G KL +V
Sbjct: 359 IERFTGKKLPMHVV 372
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 230/405 (56%), Gaps = 7/405 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F +L + L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L
Sbjct: 60 KTFKDLGIVDALCEACEKLNYKYPTPIQEKSIPVALEGRDIIGLAETGSGKTAAFALPVL 119
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 120 QALLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALG 176
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+
Sbjct: 177 KKPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERR 236
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLS 363
T LFSAT++ ++ L + SL P+R+S + + STL + + I +R ++ L+
Sbjct: 237 TYLFSATISSKIESLQRASLRDPVRVSISSNKYQTVSTLLQHYIFIPHVR---KDVYLIY 293
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ IIF+ T R+ IL A LHG L+Q RL AL FR D
Sbjct: 294 LINEHVGKSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGTRDI 353
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D +
Sbjct: 354 LVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVEIFT 413
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL ++ + + +E+ + ++ EER
Sbjct: 414 RIEAALGKKLTEYPTEKEEVFTFQTRVEEAQRHARVEMKSFTEER 458
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 166/418 (39%), Positives = 241/418 (57%), Gaps = 7/418 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 57 SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + ++C ++VGG+ Q AL
Sbjct: 117 SLLDKPQPLFG---LVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGK 173
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 174 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL PLR+S + + STL + + I V+++ L+ L
Sbjct: 234 YLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPL---VHKDTYLIYL 290
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T R+ IL A LHG L+Q+ RL AL FR + L
Sbjct: 291 LNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREIL 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G+A++FVT D +
Sbjct: 351 VATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMR 410
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
I G K + + + + +E+ + ++ E+R + A ++ + N
Sbjct: 411 IEAALGKKQEEYQTVKDEVMVFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGRRPAN 468
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 216/354 (61%), Gaps = 7/354 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACE LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 57 SFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ + LIL PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 117 ALMEKPQSLFG---LILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL+ PLR+S S + STL + + I ++ L+ L
Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHK---YKDLYLVYL 290
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ I+F+ T RL IL A LHG L+Q+ RL AL FR + D L
Sbjct: 291 LNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDIL 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A VT D
Sbjct: 351 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYD 404
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 298 bits (762), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 221/368 (60%), Gaps = 5/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L AC +GY PTPIQA IPLAL RD+ G A TGSGKTAAFALP L+
Sbjct: 54 SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQ 113
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ L+L PTRELA Q+ E + ++RC ++VGG+ Q AL
Sbjct: 114 ALMDKPQSFFG---LVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGK 170
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P+ R+T
Sbjct: 171 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERRT 230
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ PLR+S S+ + T++ + R + +++ L+ L
Sbjct: 231 FLFSATMSSKVESLQRASLSNPLRVSV--SSNKYQTVSTLLQSYRFIPHKHKDIYLVYLL 288
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T R+ L A LHG L+Q+ RL AL FR + D L+
Sbjct: 289 NEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILV 348
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++FVT D + I
Sbjct: 349 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 408
Query: 486 AKRAGSKL 493
G KL
Sbjct: 409 EGALGKKL 416
>gi|221062043|ref|XP_002262591.1| DEAD/DEAH box helicase (fragment) [Plasmodium knowlesi strain H]
gi|193811741|emb|CAQ42469.1| DEAD/DEAH box helicase, putative (fragment) [Plasmodium knowlesi
strain H]
Length = 555
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 170/467 (36%), Positives = 266/467 (56%), Gaps = 42/467 (8%)
Query: 82 DNDHSDSEFD----QHEDYKPEDEDDFSNAGDTKSFFAPADGAS---FHANS-FMELNLS 133
+ND+ +SE D ++++ + E+ED + S P + S N+ + +L +S
Sbjct: 88 ENDNVESENDNVESENDNVESENEDARGECEEPSSKKNPKENDSSSVIDRNTLWSDLYIS 147
Query: 134 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL----- 188
RP L+ + PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL
Sbjct: 148 RPFLKVLYEGKLNNPTFIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLHSPNI 207
Query: 189 ----YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
Y P+ I + LIL PTRELA+Q + +++ + ++ I L GG+ K QE +
Sbjct: 208 KMRSYNPRSICITKSLILLPTRELALQCYDVVKSMTKYVPITYSLFCGGIDVKQQEHEYK 267
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI + TPGR++D L NS S ++ L V++ DEAD+LLELGF E +++ +C ++Q
Sbjct: 268 KKKDIFICTPGRILDLLLNSSSDFINYLEVVVFDEADKLLELGFKEECLKVLDVCKFKKQ 327
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR--------PSTLT-EEVVRIRRMRE- 354
+ FSATLT D+ EL SL P+ + + ++ PS ++ +++++ ++ E
Sbjct: 328 ILFFSATLTRDIKELANFSLKNPIFIQSGVDNRKVDSKGEIIPSCISNKKILKSFKISEK 387
Query: 355 VNQE-----------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+NQE A LL LCS + + IIF TK+ H + ++F L K AELHG+
Sbjct: 388 LNQEFVNIVNEKYRRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGS 447
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
LTQ +R+E++ F+K VDFL+ T++A+RGLDI + VINY P ++ YVHR+GRTAR
Sbjct: 448 LTQKKRIESILKFKKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTAR 507
Query: 464 AGREGYAVTFVTDNDRS----LLKAIAKRAGSKLKSRIVAEQSITKW 506
G++G + T N+++ ++K + K +K+ R ++ SI W
Sbjct: 508 IGKDGTSSTLYRPNEKTDVKKIIKGLKKSKNAKIFRRNISNDSILHW 554
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 176/456 (38%), Positives = 251/456 (55%), Gaps = 25/456 (5%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACE 141
++ S S D H + + D S A T++ P +F EL + L ACE
Sbjct: 23 EDSASQSSHDAHTEEESATLDVASTADATEAPEEP--------KTFKELGIVDSLCEACE 74
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201
+L Y +PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+ LL +P+ + L+
Sbjct: 75 SLNYKRPTAIQAKAIPVALQGRDVIGLAETGSGKTAAFALPILQALLEKPQPLFG---LV 131
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
L PTRELA Q+ E + +RC ++VGGL Q AL P I+VATPGR++DHL
Sbjct: 132 LAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVDHL 191
Query: 262 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
+ L L L++DEADRLL++ F I ++++ P+ R+T LFSATL+ V+ L +
Sbjct: 192 EKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATLSSKVESLQR 251
Query: 322 LSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK 380
SL P+R+S S + STL + + + R ++ L+ L ++ +IIF+ T
Sbjct: 252 ASLRDPVRVSVSSSKYQTVSTLLQHYILVPHKR---KDTYLIYLVNEFAGKSIIIFTRTV 308
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
R+ IL A LHG L+Q+ RL AL F+ + L+ATDVAARGLDI V
Sbjct: 309 FETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREILVATDVAARGLDIPAVD 368
Query: 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500
V+N P+D +Y+HRVGRTARAG+ G A+ VT D + + I G KL + +
Sbjct: 369 VVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIYQRIEAALGKKLDAYPTEK 428
Query: 501 QSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ + + +E+ +RE RI KA +E
Sbjct: 429 EEVMAFQSRVEEA----------QREARIEMKAFLE 454
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 222/369 (60%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L AC+ LG+ KPTPIQ IPLAL RDI G A TGSGKT AFALP L+
Sbjct: 66 TFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQ 125
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + A L+L PTRELA Q+ E + +RC L++GGL Q AL
Sbjct: 126 ALLDKPQPLFA---LVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGK 182
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VVATPGR++DHL + L +L L++DEADRLL++ F + ++++ P+ R+T
Sbjct: 183 KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRT 242
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + L PL++S S + STL + V I +++ L+ L
Sbjct: 243 FLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFI---PHTHKDTYLIYL 299
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C++ +IIF+ T R+ IL + A LHG L+Q+ RL AL FR D L
Sbjct: 300 CNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDIL 359
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+N P D +YVHRVGRTARAGR G+A++FVT D L
Sbjct: 360 VATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLR 419
Query: 485 IAKRAGSKL 493
I G+KL
Sbjct: 420 IEAALGTKL 428
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 220/378 (58%), Gaps = 9/378 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D A SF +L + L+ A EALGY PTPIQ IPLAL GRD+ G A TGSGKTA
Sbjct: 54 DDAPVAKKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTA 113
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ LL +P + A+ ++ PTRELA Q+ E + ++RC ++VGGL
Sbjct: 114 AFALPVLQALLEKPSGLFAV---VMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMV 170
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P +VVATPGR++DHL + L L L+LDEADRLL++ F I ++++
Sbjct: 171 QQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILK 230
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRI-RRMREV 355
P+ R T LFSAT++ V+ L + SL P R+S + + STL + + I +++V
Sbjct: 231 FIPRERHTYLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDV 290
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
++ S +T I+F T RL IL A LHG L+Q+ RL AL
Sbjct: 291 YCVHLINSFIGQT----TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNK 346
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
FR D L+ATDVAARGLDI V VINY P+D +Y+HRVGRTARAG+ G A++ VT
Sbjct: 347 FRAGSRDILVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVT 406
Query: 476 DNDRSLLKAIAKRAGSKL 493
D + I G KL
Sbjct: 407 QYDLEIWLRIEASMGKKL 424
>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 449
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/374 (43%), Positives = 232/374 (62%), Gaps = 4/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LNLS P+L+A +A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LE
Sbjct: 2 SFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLL P R R+L+LTPTRELA+QV + +F +RC ++GG+ + Q L
Sbjct: 62 RLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLA 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQ
Sbjct: 122 QPVDIIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LF+AT+ + + +L + L P+R++ + + + + + MR N+ +L L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNR--LLQHL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S +K IIFS TK+ A +L AA LHG+++Q R + + R+ V L
Sbjct: 239 VSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ + L
Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358
Query: 485 IAKRAGSKLKSRIV 498
I + G KL +V
Sbjct: 359 IERFTGKKLPMHVV 372
>gi|341897829|gb|EGT53764.1| hypothetical protein CAEBREN_24102 [Caenorhabditis brenneri]
Length = 485
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 225/335 (67%), Gaps = 3/335 (0%)
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
+GGL K QE+ALRS PD+VVATPGR+IDHL NS + +L + VL+LDEADR+LE F
Sbjct: 1 MGGLDLKAQESALRSGPDVVVATPGRLIDHLHNSPNFNLGAIEVLVLDEADRMLEEAFRD 60
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+++EL+RLC + RQT+LFSAT+TE++DEL +SL KP+++ + + L +E +RIR
Sbjct: 61 QMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKLRQEFIRIR 120
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
RE ++E+++ +L ++TF + I+F TK+ R++IL GL +K ++ +LTQ QR+
Sbjct: 121 AGRESDRESIVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRI 180
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+HRVGRTARAG+ G +
Sbjct: 181 ESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRS 240
Query: 471 VTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERI 529
++ V + +R LLK I A LK R+VA + + + + I+++E+ + I +E+R E+
Sbjct: 241 ISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKE 300
Query: 530 LRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKE 564
LR AE K ++ + E +R W + E +
Sbjct: 301 LRIAEASMAKTQHALETGE--AGNERRVWMMKESQ 333
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 171/441 (38%), Positives = 249/441 (56%), Gaps = 10/441 (2%)
Query: 93 HEDYKPEDEDDFSNAGDTKSFF--APADGASFHAN---SFMELNLSRPLLRACEALGYSK 147
H + E ED FS++ + + P + A SF +L + L AC++LGY
Sbjct: 11 HTPPQGEAEDGFSDSETSPASLEETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKA 70
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ + L+L PTRE
Sbjct: 71 PTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFG---LVLAPTRE 127
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LA Q+ E + +RC ++VGG+ Q AL P I+VATPGR++DHL N+
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGF 187
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
L L L++DEADRLL+L F + +++++ PK R+T LFSAT++ V+ L + SL+ P
Sbjct: 188 SLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNP 247
Query: 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
LR+S S+ + T++ + + +++ L+ L ++ VI+F+ T RL
Sbjct: 248 LRVSV--SSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIVFTRTVNETQRLA 305
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
L A LHG L+Q+ RL AL FR + + L+ATDVAARGLDI V V+NY
Sbjct: 306 NLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDL 365
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
P D +Y+HRVGRTARAG+ G A + VT D + + I G +L V ++ + S
Sbjct: 366 PSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDEYKVEKEEVMVLS 425
Query: 508 KIIEQMEDQVAAILQEEREER 528
+ + + ++E E R
Sbjct: 426 DRVGEAQRHAITEMKELHENR 446
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 223/372 (59%), Gaps = 7/372 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ +F EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP
Sbjct: 47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPI 106
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ L+ +P+ L+L PTRELA Q+ E + +R C++VGG+ Q +L
Sbjct: 107 LQALMEKPQPFFG---LVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISL 163
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R
Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRER 223
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLL 362
+T LFSAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+
Sbjct: 224 RTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLV 280
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ IIF+ T RL L A LHG L+Q+ RL AL FR + +
Sbjct: 281 YLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRN 340
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D +
Sbjct: 341 ILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVW 400
Query: 483 KAIAKRAGSKLK 494
I G KLK
Sbjct: 401 LRIEGALGKKLK 412
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 223/372 (59%), Gaps = 7/372 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ +F EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP
Sbjct: 47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPI 106
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ L+ +P+ L+L PTRELA Q+ E + +R C++VGG+ Q +L
Sbjct: 107 LQALMEKPQPFFG---LVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISL 163
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R
Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRER 223
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLL 362
+T LFSAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+
Sbjct: 224 RTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLV 280
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ IIF+ T RL L A LHG L+Q+ RL AL FR + +
Sbjct: 281 YLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRN 340
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D +
Sbjct: 341 ILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVW 400
Query: 483 KAIAKRAGSKLK 494
I G KLK
Sbjct: 401 LRIEGALGKKLK 412
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 163/402 (40%), Positives = 237/402 (58%), Gaps = 6/402 (1%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H +F +L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP
Sbjct: 36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLP 95
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ L P+ A L+L PTRELA Q+ + + +R ++VGG+ Q A
Sbjct: 96 ILQTLWENPQPFFA---LVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIA 152
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L P ++VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK
Sbjct: 153 LSKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKE 212
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
R T LFSAT+T V +L + SL KP+R+ + + ST++ + + N++A LL
Sbjct: 213 RNTYLFSATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDAYLL 269
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ +S +IIF+ T + RL I+ A LHG +TQ+ RL +L F+
Sbjct: 270 YLANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRS 329
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L
Sbjct: 330 ILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEIL 389
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEE 524
+ I G K+ S V ++++ + + + + A ++E
Sbjct: 390 QRIESHIGKKMTSFDVDKEAVALLTDTVAKANREAALEMRES 431
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 237/401 (59%), Gaps = 6/401 (1%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H SF +L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP
Sbjct: 36 HNKSFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLP 95
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ L P+ A L+L PTRELA Q+ I + +R ++VGG+ Q A
Sbjct: 96 ILQTLWENPQPFFA---LVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIA 152
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L P ++VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK
Sbjct: 153 LSKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKE 212
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
R T LFSAT+T V +L + SL KP+R+ + + ST++ + + N+++ LL
Sbjct: 213 RNTYLFSATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDSYLL 269
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ +S +IIF+ T + RL I+ A LHG +TQ+ RL +L F+
Sbjct: 270 YLANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRS 329
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L
Sbjct: 330 ILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEIL 389
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+ I G K+ S V ++++ + + + + A ++E
Sbjct: 390 QRIESHIGKKMTSFDVDKEAVALLTDTVARANREAALEIRE 430
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 220/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+
Sbjct: 91 TFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQ 150
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P + A L+L PTRELA Q+ E + +RC L++GG+ Q AL
Sbjct: 151 ALLDKPAPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGK 207
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL + L + L++DEADRLL++ F + ++++ P+ R+T
Sbjct: 208 KPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRT 267
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL PL++S + STL V I M +++ L+ L
Sbjct: 268 FLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHM---HKDTYLVYL 324
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C++ +IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L
Sbjct: 325 CNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREIL 384
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P+D +YVHRVGRTARAG+ G+A++ VT D +
Sbjct: 385 VATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLR 444
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 445 IEAALGHKL 453
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 221/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L ACE+L Y PTPIQ IP+AL RDI G A TGSGKTAAFALP L+
Sbjct: 58 TFKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQ 117
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 118 ALLDKPQPLFG---LVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL + L L L++DEADRLL++ F I +L++ P+ R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSATL+ V+ L + SL P+R+S + + STL + ++ I +MR ++ L+ L
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMR---KDTYLIYL 291
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T R+ IL A LHG L+Q+ RL AL FR D L
Sbjct: 292 VNEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDIL 351
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + +
Sbjct: 352 VATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQR 411
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 412 IEAALGKKL 420
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 220/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+
Sbjct: 91 TFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQ 150
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P + A L+L PTRELA Q+ E + +RC L++GG+ Q AL
Sbjct: 151 ALLDKPAPLFA---LVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGK 207
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL + L + L++DEADRLL++ F + ++++ P+ R+T
Sbjct: 208 KPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRT 267
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL PL++S + STL V I M +++ L+ L
Sbjct: 268 FLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHM---HKDTYLVYL 324
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C++ +IIF+ T R+ IL + A LHG L+Q+ RL AL FR + L
Sbjct: 325 CNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREIL 384
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P+D +YVHRVGRTARAG+ G+A++ VT D +
Sbjct: 385 VATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLR 444
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 445 IEAALGHKL 453
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 234/407 (57%), Gaps = 11/407 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
EDED N T P DG +F EL + L ACEAL + P+ IQ IP+
Sbjct: 6 EDEDRLENEPKTTQGNDPDDGED--KTTFKELGVVDVLCEACEALKWRTPSKIQKEAIPV 63
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
AL GRDI G A TGSGKTAAFALP L+ LL P R+ A LILTPTRELA Q+ E
Sbjct: 64 ALQGRDIIGLAETGSGKTAAFALPILQALLENPARLFA---LILTPTRELAFQISEQFEA 120
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ I+ ++VGG+ Q L P +V+ATPGR+IDHL N+ L +L L++D
Sbjct: 121 LGSTIGIKSAVIVGGIDMMTQAMMLAKKPHVVIATPGRLIDHLENTKGFTLKNLRYLVMD 180
Query: 279 EADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
EADR+L + F E+ +++++ P+ R+T L+SAT+T+ V +L + SLT P+R+ +
Sbjct: 181 EADRILNMDFEEEVDKILKVIPRENRRTYLYSATMTKKVAKLQRASLTDPVRVEVSTKYQ 240
Query: 338 RPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
L + + I + +EV+ +L L ++F I+F T +L ++
Sbjct: 241 TVDKLQQYYLFIPAKYKEVHLVHLLQDLAGQSF----IVFCATCNGTQKLALMLRNLGFT 296
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
A LHG ++QA+RL AL+ F+ Q + L+ATDVAARGLDI V VINY P Y+H
Sbjct: 297 AIPLHGQMSQAKRLGALQKFKAQARNILLATDVAARGLDIPHVDVVINYDIPTHSKDYIH 356
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
RVGRTARAGR G AVTFV+ D L + I G +L V E+ +
Sbjct: 357 RVGRTARAGRSGKAVTFVSQYDVELYQRIEHLIGKQLPKYDVLEREV 403
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 224/382 (58%), Gaps = 9/382 (2%)
Query: 115 APADGAS--FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
A ADG +F EL + L +CE++GY+ PT IQA IP+AL GRD+ G A TG
Sbjct: 38 AQADGQEEEVQVKTFKELGIVDALCESCESVGYTTPTSIQAKSIPVALQGRDVIGLAETG 97
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
SGKTAAFALP L+ LL +P+ + L+L PTRELA Q+ E + +RC ++VG
Sbjct: 98 SGKTAAFALPMLQALLEKPQPLFG---LVLAPTRELAAQIGQTFEALGALISLRCAVIVG 154
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL Q AL P ++VATPGR++DHL + L L L++DEADRLL++ F I
Sbjct: 155 GLDMVPQAIALGKKPHVIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPSI 214
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRR 351
+L++ P+ R+T LFSAT++ V+ L + SL P+R+S S + STL + V I
Sbjct: 215 DKLLKFVPRERRTYLFSATMSSRVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYVFIPH 274
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
+R ++ L+ + ++ I+F+ T R+ IL A LHG L+Q+ RL
Sbjct: 275 IR---KDTYLIHIINEFAGKSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLG 331
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL FR + L+ATDVAARGLDI V V+NY P D +Y+HRVGRTARAG+ G A+
Sbjct: 332 ALNKFRGGTREILVATDVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAI 391
Query: 472 TFVTDNDRSLLKAIAKRAGSKL 493
+ VT D L I G KL
Sbjct: 392 SLVTQYDLELFTRIEAALGKKL 413
>gi|358373394|dbj|GAA89992.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 471
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/370 (43%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 53 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 112
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ LIL PTRELA Q+ E + +R C++VGG+ Q +L
Sbjct: 113 ALMEKPQPFFG---LILAPTRELAYQISKSFESLGASLGVRSCVIVGGMDMVSQSISLGK 169
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L +L L++DEADRLL++ F + +++++ P+ R+T
Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL+ PLR+S S + STL + + I + +++ L+ L
Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFI---PQKHKDLYLVYL 286
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T RL L A LHG L+Q+ RL AL FR + + L
Sbjct: 287 LNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNIL 346
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+N+ P D SYVHRVGRTARAG+ G A++FV D +
Sbjct: 347 VATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLR 406
Query: 485 IAKRAGSKLK 494
I G KLK
Sbjct: 407 IEGALGKKLK 416
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/419 (40%), Positives = 237/419 (56%), Gaps = 15/419 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L ACEAL Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+
Sbjct: 66 TFKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 125
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 126 ALLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 182
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T
Sbjct: 183 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRT 242
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSATL+ ++ L + SL P+R+S S+ + T++ + + ++ L+ L
Sbjct: 243 YLFSATLSSKIESLQRASLRDPVRVSI--SSNKYQTVSTLIQHYMFIPFPQKDTYLVYLV 300
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+
Sbjct: 301 NEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILV 360
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A+ VT D + I
Sbjct: 361 ATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARI 420
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
G KL T++ E++ + I + +R RI K+ EA ++ I
Sbjct: 421 EAALGKKL----------TEYPSEKEEVMTFQSRIQEAQRHARIEMKSMSEAKGSKGTI 469
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 295 bits (754), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 239/417 (57%), Gaps = 5/417 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 61 SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 120
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + ++C ++VGG+ Q AL
Sbjct: 121 ALLDKPQPLFG---LVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGK 177
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 178 KPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 237
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL PLR+S S+ + T++ + + ++++ L+ L
Sbjct: 238 YLFSATISSKVESLQRASLKDPLRVSI--SSNKYQTVSTLIQNYIFIPLIHKDTYLIYLL 295
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T R+ IL A LHG L+Q+ RL AL FR + L+
Sbjct: 296 NEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILV 355
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G+A++ VT D + I
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRI 415
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
G K + + + +E+ + ++ E+R + A ++ + N
Sbjct: 416 EAALGKKQVEYPTVKDEVMVFKPRVEEAQRHARNEMKNLHEDRGKKGAVLKGRRPAN 472
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 175/419 (41%), Positives = 242/419 (57%), Gaps = 25/419 (5%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
S P+ D+ S SE Q PE+ + DTK AP +F +L + L
Sbjct: 17 SKPVSDDVSSGSERQQE---TPEESGE--GPADTK---AP--------KTFKDLGIIDSL 60
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ P
Sbjct: 61 CDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQ--PY 118
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P I+VATPGR
Sbjct: 119 FG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LFSATL+ V
Sbjct: 178 LLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKV 237
Query: 317 DELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
+ L + SL+ PLR+S + + STL + + I + +++ +L +T I
Sbjct: 238 ESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQT----TI 293
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T RL IL A LHG L+Q+ RL AL FR D L+ATDVAARGL
Sbjct: 294 IFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGL 353
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I G +L
Sbjct: 354 DIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQL 412
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 218/370 (58%), Gaps = 9/370 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L+ A EALGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 62 SFADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPVLQ 121
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P + A+ ++ PTRELA Q+ E + ++RC ++VGGL Q AL
Sbjct: 122 ALLEKPSGLFAV---VMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGK 178
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VVATPGR++DHL + L L L+LDEADRLL++ F I ++++ P+ R T
Sbjct: 179 KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHT 238
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRI-RRMREVNQEAVLLS 363
LFSAT++ V+ L + SL P R+S + + STL + + I +++V ++ S
Sbjct: 239 YLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNYLFIPHALKDVYCVHLINS 298
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+T I+F T RL IL A LHG L+Q+ RL AL FR D
Sbjct: 299 FIGQT----TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDI 354
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARGLDI V VINY P+D +Y+HRVGRTARAG+ G A++ VT D +
Sbjct: 355 LVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWL 414
Query: 484 AIAKRAGSKL 493
I G KL
Sbjct: 415 RIEASMGKKL 424
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 237/401 (59%), Gaps = 6/401 (1%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H +F +L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP
Sbjct: 36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLP 95
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ L P+ A L+L PTRELA Q+ + + +R ++VGG+ Q A
Sbjct: 96 ILQTLWENPQPFFA---LVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIA 152
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L P I+VATPGR++DHL N+ L L L++DEADRLL+L F I +++++ PK
Sbjct: 153 LSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKE 212
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
R T LFSAT+T V +L + SL KP+R+ + + ST++ + + N++A LL
Sbjct: 213 RNTYLFSATMTTKVAKLQRASLNKPVRVEV---SSKYSTVSTLLQHYLLLPLKNKDAYLL 269
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ +S ++IF+ T + RL I+ A LHG +TQ+ RL +L F+
Sbjct: 270 YLANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRS 329
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVA+RGLDI V VINY P + YVHRVGRTARAGR G ++T VT D +L
Sbjct: 330 ILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEIL 389
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523
+ I G K+ S V ++++ + + + + A ++E
Sbjct: 390 QRIESHIGKKMTSFDVDKEAVALLTDTVAKANREAALEMRE 430
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis
NIH/UT8656]
Length = 480
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/417 (39%), Positives = 244/417 (58%), Gaps = 6/417 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F EL + L ACE+LGY PTPIQA IPLAL GRD+ G A TGSGKTAAF LP L
Sbjct: 51 TTFKELGIIDSLCEACESLGYKAPTPIQAEAIPLALQGRDLIGLAETGSGKTAAFVLPIL 110
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ L+ +P+++ + LIL PTRELA Q+ +E + +RC ++VGG+ Q AL
Sbjct: 111 QALMDKPQQLHS---LILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALG 167
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-R 303
P ++VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R
Sbjct: 168 KKPHVIVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILDKILKILPREGR 227
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
+T LFSAT++ V+ L + SL+ PLR++ S + T++ + + +++ L+
Sbjct: 228 KTYLFSATMSSKVESLQRASLSNPLRVAV--SQDKYQTVSTLIQSYLFIPHKHKDLYLIH 285
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ ++ IIF+ T A R+ IL A +HG L+Q RL AL FR + +
Sbjct: 286 ILNEHAGHTGIIFTRTVNEAQRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNL 345
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+A+DVAARGLDI V VIN+ P+D +Y+HRVGRTARAG+ G A++FVT D L
Sbjct: 346 LVASDVAARGLDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDVELWL 405
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA 540
I G KL ++ + ++ + + A ++E E R + A + +A
Sbjct: 406 RIEGALGKKLDEYKTVKEEVMVLAERVGDAQRAAALEMKELHENRGKKGATLRHRRA 462
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 238/414 (57%), Gaps = 17/414 (4%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F EL + L ACE+L Y PT IQA IP+AL GRD+ G A TGSGKTAAFALP L
Sbjct: 56 KTFKELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPIL 115
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 116 QALLEKPQPLFG---LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALG 172
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I+VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+
Sbjct: 173 KKPHIIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERR 232
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLS 363
T LFSATL+ V+ L + SL P+R+S S + STL + + + R ++ L+
Sbjct: 233 TYLFSATLSSKVESLQRASLRDPVRVSVSSSKYQTVSTLLQHYIFVPHKR---KDTYLIY 289
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ +IIF+ T R+ IL A LHG L+Q+ RL AL F+ +
Sbjct: 290 LVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSREI 349
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARGLDI V V+N P+D +Y+HRVGRTARAG+ G A++ VT D + +
Sbjct: 350 LVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEIYQ 409
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEA 537
I G +L++ ++ + + +E+ +RE R+ KA +E+
Sbjct: 410 RIEAALGKQLETYPTEKEEVMAFQSRVEEA----------QRETRVEMKAFLES 453
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/419 (41%), Positives = 239/419 (57%), Gaps = 25/419 (5%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
S P D+ S SE +Q + DE DTK +F +L + L
Sbjct: 17 SKPAPDDASSGSELEQEALEEGSDE-----TADTKV-----------PKTFKDLGIIDSL 60
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ P
Sbjct: 61 CDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQ--PY 118
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P I+VATPGR
Sbjct: 119 FG-LVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LFSATL+ V
Sbjct: 178 LLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKV 237
Query: 317 DELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
+ L + SL+ PLR+S + + STL + + I + +++ +L +T I
Sbjct: 238 ESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQT----TI 293
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T RL IL A LHG L+Q+ RL AL FR D L+ATDVAARGL
Sbjct: 294 IFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGL 353
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I G +L
Sbjct: 354 DIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQL 412
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 175/419 (41%), Positives = 242/419 (57%), Gaps = 25/419 (5%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
S P+ D+ S SE Q PE+ + DTK AP +F +L + L
Sbjct: 17 SKPVSDDVSSGSERGQE---TPEESGE--GPTDTK---AP--------KTFKDLGIIDSL 60
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
AC +LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ P
Sbjct: 61 CDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQ--PY 118
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
L+L PTRELAVQ+ E + +RC ++VGG+ Q +L P I+VATPGR
Sbjct: 119 FG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGR 177
Query: 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T LFSATL+ V
Sbjct: 178 LLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKV 237
Query: 317 DELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
+ L + SL+ PLR+S + + STL + + I + +++ +L +T I
Sbjct: 238 ESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQT----TI 293
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T RL IL A LHG L+Q+ RL AL FR D L+ATDVAARGL
Sbjct: 294 IFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGL 353
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P D +Y+HRVGRTARAG+ G A++ VT + + + I G +L
Sbjct: 354 DIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQL 412
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/380 (43%), Positives = 228/380 (60%), Gaps = 11/380 (2%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
PAD + +F +L + L AC +LGY PTPIQA IPLAL GRD+ G A TGSGK
Sbjct: 42 PADTKA--PKTFKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGK 99
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFALP L+ L+ +P+ P L+L PTRELAVQ+ E + +RC ++VGG+
Sbjct: 100 TAAFALPILQALMEKPQ--PYFG-LVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMD 156
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q +L P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + ++
Sbjct: 157 MISQSISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKI 216
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMR 353
+++ P+ R+T LFSATL+ V+ L + SL+ PLR+S + + STL + + I + +
Sbjct: 217 LKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYK 276
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
++ +L +T IIF+ T RL IL A LHG L+Q+ RL AL
Sbjct: 277 DIYLVHILNEFPGQT----TIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGAL 332
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
FR D L+ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++
Sbjct: 333 GKFRSGSRDILVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISV 392
Query: 474 VTDNDRSLLKAIAKRAGSKL 493
VT + + + I G +L
Sbjct: 393 VTQYEVEIWQRIEAALGKQL 412
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/387 (44%), Positives = 222/387 (57%), Gaps = 8/387 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L LL+ EALGY T IQA IP AL RDI G A TGSGKTAAFALP L++
Sbjct: 33 FNTLGLIPELLQTVEALGYKNATSIQAQAIPSALQDRDIIGVAKTGSGKTAAFALPILQK 92
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
PK + A IL PTRELA Q+ E + +RCC +VGGL Q+ AL
Sbjct: 93 WWEDPKPLYAC---ILAPTRELAYQIQKQFEALGANLGVRCCCIVGGLDIMAQKVALAKR 149
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVVATPGR+ DHL N+ L L L+LDEADRLL++ F I +++++ PK R+TM
Sbjct: 150 PHIVVATPGRLQDHLENTKGFSLRSLKYLVLDEADRLLDMDFGPIIDKILKVIPKERRTM 209
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQEAVLLSLC 365
LFSAT++ V L + SL P+++ STL + V MR EVN ++ SL
Sbjct: 210 LFSATMSTKVKRLQRASLVNPVKVEVSSKYSTVSTLQQYYVFGPHMRKEVNMITLVRSLS 269
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K+ +I+F+ T RL ++ + A LH L+Q+ RL +L FR LI
Sbjct: 270 GKS----IIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRAGGRQVLI 325
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P++ Y+HRVGRTARAGR G A+TFVT D I
Sbjct: 326 ATDVAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEFHLRI 385
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQ 512
+ G K+ ++ EQ ++ +E+
Sbjct: 386 EEVIGKKMDEWVIPEQEAAMLAEKVEE 412
>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 442
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/374 (42%), Positives = 229/374 (61%), Gaps = 4/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LNLS PL++A A GY++PTPIQA IPLAL+GRD+ GSA TG+GKTA+F LP LE
Sbjct: 2 SFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLL P R R+L+LTPTRELA QV ++ +F +RC ++GG+ + Q L
Sbjct: 62 RLLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLLS 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+IDHL + S++ L +L+LDEADR+L++GFS ++ + P RQ
Sbjct: 122 QPVDIIVATPGRLIDHL-DRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LF+AT+ + + +L + L P+R++ D ++ + + MR N+ +L L
Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVTDDMRHKNR--LLQHL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +K IIFS TK+ A +L AA LHG+++Q R + R+ V L
Sbjct: 239 VADASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLD+ G+ VINY P+ YVHR+GRT RAG G A++F + N+ + L
Sbjct: 299 VATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358
Query: 485 IAKRAGSKLKSRIV 498
I + G L ++
Sbjct: 359 IERLTGKPLPQHVI 372
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 238/408 (58%), Gaps = 16/408 (3%)
Query: 93 HEDYKPEDEDDFSNAGDTKSFFAPADGASFHANS-----FMELNLSRPLLRACEALGYSK 147
H KP +D ++G + AP + A++ F +L + L AC +LGY
Sbjct: 14 HPSSKPAPDD--VSSGSEREQEAPEESGEEPADTKAPKTFKDLGIIDSLCDACTSLGYKT 71
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ P L+L PTRE
Sbjct: 72 PTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQ--PYFG-LVLAPTRE 128
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV 267
LAVQ+ E + +RC ++VGG+ Q +L P I+VATPGR++DHL N+
Sbjct: 129 LAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLENTKGF 188
Query: 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
L +L L++DEADRLL+L F + +++++ P+ R+T LFSATL+ V+ L + SL+ P
Sbjct: 189 SLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNP 248
Query: 328 LRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385
LR+S + + STL + + I + +++ +L +T IIF+ T R
Sbjct: 249 LRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQT----TIIFTRTVNETQR 304
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
L IL A LHG L+Q+ RL AL FR D L+ATDVAARGLDI V V+N+
Sbjct: 305 LSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDIPAVDLVLNF 364
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
P D +Y+HRVGRTARAG+ G A++ VT + + + I G +L
Sbjct: 365 DLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALGKQL 412
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 223/369 (60%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L ACE LGY+ PTPIQ CIP+AL GRD+ G A TGSGKTAAF LP L+
Sbjct: 29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQ 88
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P++ + LIL PTRELA Q+ +E + +RC L++GG+ Q AL
Sbjct: 89 ALMDKPQQFHS---LILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGK 145
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ L L L+LDEADRLL+L F + +L+RL PKR+ T
Sbjct: 146 KPHVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPKRK-T 204
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ P+R+S + S L + + I ++ L+ L
Sbjct: 205 YLFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHK---FKDFYLVYLL 261
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ IIF+ T RL I+ A +HG L+Q+ RL +L FR + + LI
Sbjct: 262 NERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLI 321
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A +FVT + L I
Sbjct: 322 ATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRI 381
Query: 486 AKRAGSKLK 494
G K++
Sbjct: 382 EDALGKKVE 390
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 238/415 (57%), Gaps = 9/415 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+G SF SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTA
Sbjct: 78 EGESFE--SFNELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTA 135
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFA+P L RL + + A IL PTRELA Q+ + + +R +VGG++
Sbjct: 136 AFAIPILNRLWHDQEPYYAC---ILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMM 192
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q L P I++ATPGR++DHL N+ L L L++DEADRLL++ F + +++
Sbjct: 193 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 252
Query: 298 LCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+ P + R T LFSAT+T +D+L + SLT P++ + + TL + ++ +
Sbjct: 253 IIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQALMVVPGGL--- 309
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+ L+ L +++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF
Sbjct: 310 KNTYLIYLLNESIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLF 369
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ L+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+
Sbjct: 370 KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 429
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
D L+ I + G KL V + I +++ +V + +E+I R
Sbjct: 430 YDLELILRIEEVLGRKLPKENVDKSIILTLRDSVDKANGEVVMEMNRRNKEKIAR 484
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 219/371 (59%), Gaps = 7/371 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A +F +L + L+ AC+ LGY+ PTPIQA IP AL RD+ G A TGSGKTAAFALP
Sbjct: 52 AKTFKDLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNRDVIGLAETGSGKTAAFALPI 111
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ LL +P + L+L PTRELA Q+ + E + ++R ++VGGL Q AL
Sbjct: 112 IQALLDKPSHLFG---LVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIAL 168
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P IVVATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R
Sbjct: 169 GKKPHIVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRER 228
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLL 362
+T LFSAT++ ++ L + SL P+R+S S+ + STL + + + ++ L+
Sbjct: 229 RTFLFSATMSSKIESLQRASLRDPVRISISSSSHQTVSTLIQNYIFCPHNK---KDTYLV 285
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L ++ K+++F+ T RL IL A +HG L Q RL AL FR D
Sbjct: 286 YLVNEYSGKKIVLFTRTVTETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRD 345
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI V VIN+ P D +YVHRVGRTARAG+ G A+T +T D +
Sbjct: 346 ILVATDVAARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITIMTQYDLEIY 405
Query: 483 KAIAKRAGSKL 493
I G KL
Sbjct: 406 LRIEAALGKKL 416
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 163/402 (40%), Positives = 233/402 (57%), Gaps = 8/402 (1%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
ED++ +++G + A GA +F +L + L ACE L ++ PTPIQA IPL
Sbjct: 63 EDQNVANSSGSEQEAEAATAGADEARKTFADLGVREELCDACENLKFTNPTPIQAQAIPL 122
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
AL GRD+ G A TGSGKTAAF LP L+ LL + + + LIL PTRELA Q+ ++
Sbjct: 123 ALQGRDVIGLAETGSGKTAAFVLPILQALLEKQQSLFG---LILAPTRELAYQIAQQVDA 179
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ +++C +VGG+ Q AL P I+VATPGR++DHL N+ L L ++LD
Sbjct: 180 LGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSLKHLKYMVLD 239
Query: 279 EADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
EADRLL+L F + +++++ P+ R T LFSAT++ V+ L + +L P+R+S S+
Sbjct: 240 EADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSH 299
Query: 338 RP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
+ STL + + + ++ L+ L + IIFS T R+ IL
Sbjct: 300 QVVSTLLQRYIFLPHKY---KDLYLIHLLNDNIGHPTIIFSRTVNETQRIAILLRTLGFG 356
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
A LHG L+Q+ RL AL F+ Q D L+ATDVAARGLDI V V+N+ P D +YVH
Sbjct: 357 AIPLHGQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVH 416
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498
RVGRTARAG+ G AV+FVT D + I G ++ ++
Sbjct: 417 RVGRTARAGKSGKAVSFVTQYDLEIWLRIENALGKQIPEEVI 458
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 220/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L ACE+L Y PTPIQ IP+AL RDI G A TGSGKTAAFALP L+
Sbjct: 58 TFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQ 117
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 118 ALLDKPQPLFG---LVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGK 174
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL + L L L++DEADRLL++ F I +L++ P+ R+T
Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSATL+ V+ L + SL P+R+S + + STL + ++ + + R ++ L+ L
Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKR---KDTYLIYL 291
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ I+F+ T R+ IL A LHG L+Q+ RL AL FR D L
Sbjct: 292 VNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDIL 351
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + +
Sbjct: 352 VATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQR 411
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 412 IEAALGKKL 420
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 167/411 (40%), Positives = 231/411 (56%), Gaps = 14/411 (3%)
Query: 84 DHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEAL 143
DHSDSE + ED N + + P++ SF EL L L AC+++
Sbjct: 18 DHSDSE-----AHSSASEDAAPNTTEQEQ--EPSEAPKQAPKSFKELGLIEQLCEACDSM 70
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203
GY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P L+L
Sbjct: 71 GYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFG---LVLA 127
Query: 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN 263
PTRELA Q+ E + +R ++VGG+ Q AL P I+VATPGR++DHL N
Sbjct: 128 PTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN 187
Query: 264 SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323
+ L +L L++DEADRLL++ F + +++++ P+ R+T LFSAT++ V+ L + S
Sbjct: 188 TKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRAS 247
Query: 324 LTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382
L PLR++ S + STL + + I +++ L+ L ++ IIF T
Sbjct: 248 LQNPLRVAVSSSKFQTVSTLQQSYIFIPHK---HKDLYLVYLLNEFVGQSCIIFCRTVHE 304
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
RL L A LHG L+Q+ RL AL FR + D L+ATDVAARGLDI V V
Sbjct: 305 TQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVV 364
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+N+ P D +++HR+GRTARAG+ G A++F T D I G KL
Sbjct: 365 LNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWLRIEGALGKKL 415
>gi|393220360|gb|EJD05846.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 450
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/368 (43%), Positives = 218/368 (59%), Gaps = 8/368 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL + PLL A E + + KPT IQA +P A++GRDI G A TGSGKT AFALP L+R
Sbjct: 17 FKELGVIGPLLEALEQMNFKKPTDIQAEALPHAISGRDIIGVAETGSGKTVAFALPILQR 76
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L PK + A +L PTRELA Q+ E + +RC ++VGG++ Q AL
Sbjct: 77 LWEEPKGLFAC---VLAPTRELAYQISQQFESLGSAIGVRCAVIVGGMNMVDQAVALAKR 133
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVVATPGR+ DHL N+ L + L+LDEADRLL++ F I +++++ PK R T
Sbjct: 134 PHIVVATPGRLNDHLENTKGFSLRGIKFLVLDEADRLLDMDFGPIIDKILKVIPKERTTY 193
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLC 365
LFSAT+T V +L + SLT P+R+ STL + + I + +EVN L+ +C
Sbjct: 194 LFSATMTTKVAKLQRASLTNPVRVEVSKKYTTVSTLLQYYLFIPYKQKEVN----LIHMC 249
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ + +IIF+ T RL ++ + LHG L+Q+ RL AL F+ + L+
Sbjct: 250 NTLSQNSIIIFTRTVMDCQRLALILKTLGFSSVPLHGQLSQSARLGALAKFKSGGRNILV 309
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 310 ATDIASRGLDIPSVDAVINYDIPSHSKDYIHRVGRTARAGRAGNSITLVTQYDVELIQRI 369
Query: 486 AKRAGSKL 493
G K+
Sbjct: 370 EAVIGKKM 377
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P IV+ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIVIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 184 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 357
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRGSVDKANGEVVMEMNRRNKEKIAR 524
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 184 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 357
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 524
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRXSVDKANGEVVMEMNRRNKEKIAR 482
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 232/397 (58%), Gaps = 6/397 (1%)
Query: 98 PEDEDDFSNAGDTK-SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACI 156
P ED S A D + S + +F +L + L AC+ LGY +PT IQ I
Sbjct: 34 PRIEDAVSEASDAEESTTLDNENGEAAPKTFKDLGIVDSLCEACDRLGYKQPTAIQQEAI 93
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
PLAL RDI G A TGSGKTAAFALP L+ LL +P+ + A L+L PTRELA Q+
Sbjct: 94 PLALQDRDIIGIAETGSGKTAAFALPILQALLDKPQPLFA---LVLAPTRELAAQIAQSF 150
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
E + ++RC L++GGL Q AL P +VVATPGR++DHL + L +L +
Sbjct: 151 EALGSLINLRCALLLGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYCV 210
Query: 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
+DEADRLL++ F + ++++ P+ R+T LFSAT++ V+ L + SL PL+++ S
Sbjct: 211 MDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVNV--ST 268
Query: 337 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
+ T++ V + ++++ + LC++ +I+F+ T R+ IL +
Sbjct: 269 SKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEFAGKTMIVFTRTVLETQRIAILLRTLGMG 328
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
A LHG L+Q+ RL AL FR + L+ATDVAARGLDI V VINY P+D +Y+H
Sbjct: 329 AIPLHGGLSQSARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIH 388
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
RVGRTARAG+ G+A++ VT D + I G+KL
Sbjct: 389 RVGRTARAGKSGHALSIVTQYDLEIWTRIEAALGTKL 425
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 230/402 (57%), Gaps = 8/402 (1%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
ED ED+ + S +G + GA +F +L + L ACE L + PTPIQ
Sbjct: 55 EDTGEEDQGEASASGAEEEAEPATTGADEVKKTFADLGIREELCDACENLKFKNPTPIQT 114
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
IPLAL GRD+ G A TGSGKTAAF LP L+ LL +P+ + LIL PTRELA Q+
Sbjct: 115 QAIPLALEGRDVIGLAETGSGKTAAFVLPILQSLLEKPQPLFG---LILAPTRELAYQIA 171
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273
++ + +++C +VGG+ Q AL P IVVATPGR++DHL N+ L L
Sbjct: 172 QQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSLKHLK 231
Query: 274 VLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSA 332
++LDEADRLL+L F + +++++ P+ R T LFSAT++ V+ L + +L P+R+S
Sbjct: 232 YMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVENLQRAALQNPVRVSI 291
Query: 333 DPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391
S+ + STL + R + ++ L+ L + IIF+ T R+ +L
Sbjct: 292 SSSSHQVVSTLLQ---RYAFIPHKYKDLYLIHLLNDNIGHPTIIFTRTVNETQRIAVLLR 348
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V ++N+ P D
Sbjct: 349 ALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDS 408
Query: 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+YVHRVGRTARAG+ G AV+FVT D + I G K+
Sbjct: 409 QTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIEHALGKKI 450
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/425 (38%), Positives = 237/425 (55%), Gaps = 11/425 (2%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
AN+ + L ACE LGY PT IQA IP+AL GRD+ G A TGSGKTAAFALP
Sbjct: 57 ANTPHHQGIVDALCEACETLGYKTPTGIQAQSIPVALQGRDVIGLAETGSGKTAAFALPV 116
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 117 LQALLDKPQPLFG---LVLAPTRELAAQIGQTFEALGALISLRCAVIVGGLDMVPQAVAL 173
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P ++VATPGR++DHL + L L L+LDEADRLL++ F I +L++ P+ R
Sbjct: 174 GKKPHVIVATPGRLVDHLEKTKGFSLRTLKYLVLDEADRLLDMDFGESIEKLLKFIPRER 233
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLL 362
+T LFSAT++ V+ L + SL P+R+S S + STL + V I R ++ L+
Sbjct: 234 RTYLFSATMSSSVESLQRASLRDPVRVSVSASKYQTVSTLKQHYVFIPHKR---KDTYLI 290
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ ++ I+F+ T R +L A LHG L+Q+ RL AL FR +
Sbjct: 291 HIINEFAGKSCIVFTRTVYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTRE 350
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI V ++NY P D +Y+HRVGRTARAG+ G A++ VT D L
Sbjct: 351 ILVATDVAARGLDIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGVAISIVTQFDIELF 410
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQME----DQVAAILQEEREERILRKAEMEAT 538
I G KL E+ + + +++ + +++ I++ + +RK
Sbjct: 411 TRIEAALGKKLDEFDTKEEEVMTFQSRVQEAQRHARNEMNNIMESRNKGATMRKGRDNKR 470
Query: 539 KAENM 543
+ ++M
Sbjct: 471 RRDDM 475
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 234/404 (57%), Gaps = 7/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+
Sbjct: 61 TFKDLGVNDALCEACEKLNYKYPTPIQEQSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 120
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 121 ALLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQSIALGK 177
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T
Sbjct: 178 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRT 237
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ ++ L + SL P+++S S+ + T++ + + ++ L+ L
Sbjct: 238 YLFSATISSKIESLQRASLRDPVKVSI--SSNKYQTVSTLLQHYLFIPHPQKDVHLIYLI 295
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+
Sbjct: 296 NEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILV 355
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+NY P+D +YVHRVGRTARAG+ G A++ VT D + I
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGVAISLVTQYDLEIYLRI 415
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI-LQEEREER 528
G KL ++ + + +E+ + +VA I ++ EER
Sbjct: 416 EAALGKKLGEYPTEKEEVMAFQSRVEEAQ-RVARIEMKSFTEER 458
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 226/384 (58%), Gaps = 7/384 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L ++ L AC +LG+ PT IQ IPLAL+GRDI G A TGSGKTAAFALP L+
Sbjct: 59 SFADLGVNESLCDACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPILQ 118
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL+ P+ L+L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 119 ALLHDPQPFFG---LVLAPTRELAYQISQQFEALGSLIRVRCAVIVGGMDMVPQAIALAK 175
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL N+ L L LI+DEADRLL+L F + +++++ P+ R+T
Sbjct: 176 KPHIVVATPGRLLDHLENTKGFSLRSLKYLIMDEADRLLDLDFGPILDKILQVLPRERRT 235
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT+ +D L + +L P+R+S S+ + + L ++ + I +++ L+ L
Sbjct: 236 ALFSATMNTKLDNLTRAALRNPVRVSISTSSYQTVANLLQQYIFIPHK---HKDVYLIHL 292
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ I+F+ T RL L A LHG L Q+ RL AL FR L
Sbjct: 293 LTEFSGQTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSIL 352
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P D +YVHRVGRTARAG+ G AV+ VT D + +
Sbjct: 353 VATDVAARGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQR 412
Query: 485 IAKRAGSKLKSRIVAEQSITKWSK 508
I K G KL+ R V + + +++
Sbjct: 413 IEKALGRKLEERAVGREEVMVFAE 436
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 230/395 (58%), Gaps = 11/395 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+
Sbjct: 61 TFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQ 120
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 121 ALLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 177
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL + L L LI+DEADRLL++ F I ++++ P+ R+T
Sbjct: 178 KPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRT 237
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ ++ L + SL P+++S S+ + T++ + + ++ L+ L
Sbjct: 238 YLFSATISSKIESLQRASLRDPVKVSI--SSNKYQTVSTLLQNYLFIPHPQKDVHLIYLI 295
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T R+ IL A LHG L+Q+ RL AL FR D L+
Sbjct: 296 NEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILV 355
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+NY P+D +Y+HRVGRTARAG+ G A++ VT D + I
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRI 415
Query: 486 AKRAGSKL------KSRIVAEQSITKWSKIIEQME 514
G KL K ++A QS + ++ I ++E
Sbjct: 416 EAALGKKLAEYPTEKEEVMAFQSRVEEAQRIARIE 450
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 234/402 (58%), Gaps = 9/402 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + + CE L ++KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L+
Sbjct: 65 TFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQ 124
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P+ + ++L PTRELA Q+ E + +R +VVGG++ Q AL
Sbjct: 125 SLYENPQ---PLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSK 181
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P++R T
Sbjct: 182 KPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNT 241
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V++L + SL P+R++ + L + +V +++ L+ L
Sbjct: 242 YLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFK---HKDTHLVYLV 298
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S+ + +IIF+ TK R+ +L A LHG+L+Q RL AL F+ + LI
Sbjct: 299 SENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILI 358
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VINY P D SY+HRVGRTARAGR G +V V+ D L I
Sbjct: 359 ATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRI 418
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREE 527
G KL S + +++ +S E++ + A +QE + E
Sbjct: 419 EGALGKKLDSYPLESEAVMLFS---ERVAEASRAAIQEMKGE 457
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 240/429 (55%), Gaps = 28/429 (6%)
Query: 110 TKSFFAPA--DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
T+ APA + A +F L + L+ AC +G+ PTPIQ IP+ALTGRDI G
Sbjct: 129 TRVITAPAGEEQAEEAPTTFQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIG 188
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TGSGKTA+FALP L++LL +P+ + A LILTPTRELA Q+ E + ++C
Sbjct: 189 LAETGSGKTASFALPVLQKLLEKPQPLFA---LILTPTRELAYQISEQFEALGSTIGVKC 245
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
C++VGG+ Q AL P I++ATPGR++DHL N+ L LI+DEADR+L +
Sbjct: 246 CVIVGGMDMTTQAIALSKKPHILIATPGRIVDHLENTKGY----LKFLIMDEADRILNMD 301
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ ++++ PK R T L+SAT+T V +L + SL P+++ + TL ++ +
Sbjct: 302 FEEEVDKILKAIPKERNTYLYSATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYL 361
Query: 348 RI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
I R ++ L L + IIF+ T A R+ ++ A LHG LTQ
Sbjct: 362 FIPARFKDCYLTYALNQLAGNS----TIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQ 417
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+RL AL F++Q L+ATDVA+RGLDI V VINY P Y+HRVGRTARAGR
Sbjct: 418 PKRLGALNKFKEQSRSILVATDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGR 477
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEERE 526
G ++T VT D L + I EQ I K ++ E E+QV +L+ E
Sbjct: 478 SGRSITMVTQYDVELFQRI--------------EQLINKKMELYESEEEQVLMLLERTSE 523
Query: 527 ERILRKAEM 535
+ + +M
Sbjct: 524 AQRMAITQM 532
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/436 (38%), Positives = 242/436 (55%), Gaps = 24/436 (5%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----------------SFMELNLSR 134
D+ + E+E+D S A T A AD + ++ +F +L +
Sbjct: 65 DEFGGFSGEEEEDVSRAKMTNGSTAKADAEAEQSDEEAEAQAAAAVEAPKKTFADLGVRE 124
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
L ACE LGY TPIQ IPLAL G+DI G A TGSGKTAAF LP L+ LL +P+
Sbjct: 125 ELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQ-- 182
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
A LI+ PTRELA Q+ ++ + +++C +VGG+ Q AL P I+VA+P
Sbjct: 183 -AYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASP 241
Query: 255 GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLT 313
GR++DHL N+ L L L+LDEADRLL+L F + ++ ++ P+ R T LFSAT++
Sbjct: 242 GRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMS 301
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSK 372
V+ L + +L P+R+S S+ + STL + + I ++ L+ L +
Sbjct: 302 SKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKY---KDLYLIHLLNDNIGHA 358
Query: 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432
I+F+ T RL +L +A LHG L+Q+ RL AL F+ + D L+ATDVAAR
Sbjct: 359 TILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAAR 418
Query: 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492
GLDI V V+N+ P D +YVHRVGRTARAG+ G AV+FVT D + + I G +
Sbjct: 419 GLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHALGKQ 478
Query: 493 LKSRIVAEQSITKWSK 508
+ V+ + +++
Sbjct: 479 VPEEKVSRDEVMVYAE 494
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 184 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 357
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+ L
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 417
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 524
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 142 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+ L
Sbjct: 316 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V + +E+I R
Sbjct: 436 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 482
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/402 (40%), Positives = 232/402 (57%), Gaps = 8/402 (1%)
Query: 99 EDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL 158
ED++ + +G + A GA +F +L + L ACE L ++ PTPIQA IPL
Sbjct: 63 EDQNVANASGSEQEAEAATVGADEAKKTFADLGVREELCDACENLKFTNPTPIQAQAIPL 122
Query: 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218
AL GRD+ G A TGSGKTAAF LP L+ LL + + + LIL PTRELA Q+ ++
Sbjct: 123 ALEGRDVIGLAETGSGKTAAFVLPILQALLEKQQSLFG---LILAPTRELAYQIAQQVDA 179
Query: 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278
+ +++C +VGG+ Q AL P I+VATPGR++DHL N+ L L ++LD
Sbjct: 180 LGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLDHLENTKGFSLKHLKYMVLD 239
Query: 279 EADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
EADRLL+L F + +++++ P+ R T L+SAT++ V+ L + +L P+R+S S+
Sbjct: 240 EADRLLDLDFGPVLDKILKVLPREGRHTYLYSATMSSKVESLQRAALQNPVRVSISSSSH 299
Query: 338 R-PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
+ STL + + + ++ L+ L + IIFS T R+ IL
Sbjct: 300 QVVSTLLQRYIFLPHKY---KDLYLIHLLNDNIGHPTIIFSRTVNETQRIAILLRTLGFG 356
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
A LHG L+Q+ RL AL F+ Q D L+ATDVAARGLDI V V+N+ P D +YVH
Sbjct: 357 AIPLHGQLSQSARLGALNKFKTQSRDILVATDVAARGLDIPAVDLVVNFDLPSDSQTYVH 416
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498
RVGRTARAG+ G AV+FVT D + I G ++ ++
Sbjct: 417 RVGRTARAGKSGKAVSFVTQYDLEIWLRIENALGKQIPEEVI 458
>gi|403412636|emb|CCL99336.1| predicted protein [Fibroporia radiculosa]
Length = 974
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/368 (44%), Positives = 212/368 (57%), Gaps = 6/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L PLL A E L + PT IQ +P AL GRDI G A TGSGKTAAFALP L++
Sbjct: 539 FRSLGLIDPLLEALEQLNFKHPTDIQVEALPHALQGRDIIGVASTGSGKTAAFALPILQK 598
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L PK + A +L PTRELA Q+ E + +RC +VGGL Q AL
Sbjct: 599 LWEEPKGLFAC---VLAPTRELAYQISQQFEGLGSAMGVRCVTIVGGLDMMAQSVALAKR 655
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVVATPGR+IDHL N+ L L L+LDEADRLL++ F I +++++ PK R T
Sbjct: 656 PHIVVATPGRLIDHLENTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKIIPKERTTY 715
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T V +L + SL+ P+R+ STL + + I V ++ L+ L +
Sbjct: 716 LFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIYLAN 772
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+A
Sbjct: 773 TLAQNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKILVA 832
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVA+RGLDI V VINY P Y+HRVGRTARAGR G +VT VT D L++ I
Sbjct: 833 TDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELIQRIE 892
Query: 487 KRAGSKLK 494
G K++
Sbjct: 893 TTIGKKME 900
>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
SLH14081]
Length = 465
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 211/353 (59%), Gaps = 22/353 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L ACE LGY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 57 SFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQ 116
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ ++ LIL PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 117 ALMEKPQ---SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT++ V+ L + SL+ LRL PS + + + R+ +N+ A
Sbjct: 234 YLFSATMSSKVESLQRASLSSGLRL--------PSFIPTNIKTLPRL-SLNEYA------ 278
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F+ T RL IL A LHG L+Q+ RL AL FR + D L+
Sbjct: 279 ----GQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILV 334
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G+A VT D
Sbjct: 335 ATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYD 387
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 215/369 (58%), Gaps = 6/369 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
++F L L PLL A E +GY PT IQ+ +P AL GRDI G A TGSGKTAAFALP L
Sbjct: 19 HTFKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPIL 78
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
++L PK + A +L PTRELA Q+ E + RC ++VGG+ Q AL
Sbjct: 79 QKLWEEPKGLFAC---VLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALA 135
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P +VVATPGR++ HL + L L L+LDEADRLL++ F I ++++L PK R
Sbjct: 136 KRPHVVVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKERT 195
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T V +L + SL P+R+ + STL + + + +V +L+ L
Sbjct: 196 TYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKV---VMLIYL 252
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + +IIF+ T + A L I+ A LHG L+Q+QRL AL F+ L
Sbjct: 253 ANSLAQNSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G A+T VT D LL+
Sbjct: 313 VATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVELLQR 372
Query: 485 IAKRAGSKL 493
I K G K+
Sbjct: 373 IEKVIGKKM 381
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 242/434 (55%), Gaps = 18/434 (4%)
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACI 156
K E+ED+ N+ ++F +F ELNL L++AC+ L YSKPTPIQ+ I
Sbjct: 67 KQEEEDEDENSTSYETF-----------ETFSELNLVPELIQACKNLNYSKPTPIQSKSI 115
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
P AL G DI G A TGSGKTAAFA+P L L + + A IL PTRELA Q+
Sbjct: 116 PPALKGHDIIGLAQTGSGKTAAFAIPILNSLWHDQQPYYAC---ILAPTRELAQQIKETF 172
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
+ + +R +VGG++ Q L P +++ATPGR++DHL N+ L L L+
Sbjct: 173 DSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHVIIATPGRLMDHLENTKGFSLRKLKYLV 232
Query: 277 LDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPS 335
+DEADRLL++ F + ++++ P + R T LFSAT+T +D+L + SLT P++ +
Sbjct: 233 MDEADRLLDMEFGPVLDRILKILPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK 292
Query: 336 AKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395
+ TL + ++ + + L+ L ++ IIF+ TK A R+ L L
Sbjct: 293 YQTVDTLVQTLIVVPGGL---KNTFLIYLLNEYIGKSTIIFTRTKANAERISGLCNLLEF 349
Query: 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYV 455
A LHG+L Q QR AL+LF+ L+ATDVAARGLDI V VINY P D SY+
Sbjct: 350 NATALHGDLNQNQRTGALDLFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVDSKSYI 409
Query: 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 515
HRVGRTARAGR G +++ V+ D L+ I + G KL V ++ I +++ +
Sbjct: 410 HRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKETVDKEMILTLRDSVDKADG 469
Query: 516 QVAAILQEEREERI 529
+V L +E++
Sbjct: 470 EVIMELNRRNKEKV 483
>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
Length = 474
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 160/369 (43%), Positives = 222/369 (60%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + L AC +L Y PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+
Sbjct: 50 SFKDLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQ 109
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ +P+ P L+L PTRELAVQ+ E + +RC ++VGG+ Q +L
Sbjct: 110 ALMEKPQ--PYFG-LVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L +L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSATL+ V+ L + SL+ PLR+S + + STL + + I ++ L+ +
Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHK---YKDVYLVHI 283
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T RL IL A LHG L+Q+ RL AL FR + L
Sbjct: 284 LNEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNIL 343
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAGR G A++ VT + + +
Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQR 403
Query: 485 IAKRAGSKL 493
I G +L
Sbjct: 404 IEVALGKQL 412
>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 231/408 (56%), Gaps = 21/408 (5%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L+ AC LG+ KP+ IQ A IP+ALTGRDI G A TGSGKTAAFALP L+ L P+ +
Sbjct: 22 LIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFANPQHLY 81
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A ++ PTRELA Q+ E + +RC ++VGG+ Q AL P +++ TPG
Sbjct: 82 AC---VIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVIICTPG 138
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ +L L L++DEADRLL+L F AEI +++++ P+ R T LFSAT+T
Sbjct: 139 RLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSATMTSK 198
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
V++L + SL P+++ A + ST+ + +E L L ++ I+
Sbjct: 199 VEKLQRASLVNPVKVEV---ATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSGQTCIV 255
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F+ T + +L ++ +A LHG LTQ +RL AL F+ + LIATDVA+RGLD
Sbjct: 256 FTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVASRGLD 315
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495
I GV VINY P+ Y+HRVGRTARAGR G ++T VT D + I
Sbjct: 316 IPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRI---------- 365
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENM 543
E +I K D+ A ++ +ER +R A M+ K EN+
Sbjct: 366 ----EHAIQKKLTEYPFGHDKSAVLMLQERVSEAVRFAHMQ-LKDENL 408
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 234/403 (58%), Gaps = 5/403 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L AC ALG++KPT IQ IP+AL G+DI G A TGSGKTAAFALP L+
Sbjct: 37 TFADLGVVDSLCEACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQ 96
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ + L+L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 97 ELLDKPQPMFG---LVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVPQAIALAK 153
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL N+ L L L++DEADRLL+L F + ++ ++ P+ R+T
Sbjct: 154 KPHIVVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILDKIFQVLPRERRT 213
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT++ ++ L + +L +P+++S S+ + T+ + R + ++ L+ L
Sbjct: 214 MLFSATMSTKLNNLTRAALQQPVKVSISSSSYQ--TVKNLMQRYIFIPHKFKDIYLVYLL 271
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T R+ L A LHG + Q+ RL AL FR H D L+
Sbjct: 272 NEFAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGHRDILV 331
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT D + + I
Sbjct: 332 ATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRI 391
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
K G KL+ + ++ + + + ++ E E+R
Sbjct: 392 EKALGKKLEEHPTERDEVMVFAPRVGEAQRIAVTEMKNEHEKR 434
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 237/415 (57%), Gaps = 9/415 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+G SF +F +LNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTA
Sbjct: 75 EGDSFE--TFSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTA 132
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFA+P L RL + + A IL PTRELA Q+ + + +R +VGG++
Sbjct: 133 AFAIPILNRLWHDQEPYYAC---ILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMM 189
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q L P I++ATPGR++DHL N+ L L L++DEADRLL++ F + +++
Sbjct: 190 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 249
Query: 298 LCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+ P + R T LFSAT+T +D+L + SLT P++ + + TL + ++ +
Sbjct: 250 IIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL--- 306
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+ L+ L ++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF
Sbjct: 307 KNTYLVYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLF 366
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ L+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+
Sbjct: 367 KAGKRAILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 426
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
D L+ I + G KL V + I +++ +V + +E+I R
Sbjct: 427 YDLELILRIEEVLGKKLPKENVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIAR 481
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 230/398 (57%), Gaps = 9/398 (2%)
Query: 99 EDEDDFSNAGDTKSFFAPAD-GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
E + D S+A D + PA GA +F +L + L ACE L + PTPIQ IP
Sbjct: 60 EKDQDKSSAPDAEEEAEPATTGADEVKKTFADLGVREELCDACENLKFKNPTPIQTQAIP 119
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217
LAL GRD+ G A TGSGKTAAF LP L+ LL +P+ + LIL PTRELA Q+ ++
Sbjct: 120 LALEGRDVIGLAETGSGKTAAFVLPILQSLLEKPQPLFG---LILAPTRELAYQIAQQVD 176
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
+ +++C +VGG+ Q AL P IVVATPGR++DHL N+ L L ++L
Sbjct: 177 ALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSLKHLKYMVL 236
Query: 278 DEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
DEADRLL+L F + +++++ P+ R T LFSAT++ V+ L + +L P+R+S S+
Sbjct: 237 DEADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSS 296
Query: 337 KRP-STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395
+ STL + R + ++ L+ L + IIF+ T R+ +L
Sbjct: 297 HQVVSTLLQ---RYAFIPHKYKDLYLVHLLNDNIGHPTIIFTRTVNETQRIAVLLRALGF 353
Query: 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYV 455
A LHG L+Q+ RL AL F+ + D L+ATDVAARGLDI V ++N+ P D +YV
Sbjct: 354 GAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDLIVNFDLPSDSQTYV 413
Query: 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
HRVGRTARAG+ G AV+FVT D + I G K+
Sbjct: 414 HRVGRTARAGKSGKAVSFVTQYDLEIWLRIEHALGKKI 451
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 231/410 (56%), Gaps = 7/410 (1%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H SF ELNL L+ ACE L YSKPTPIQA IP AL G+DI G A TGSGKTAAFA+P
Sbjct: 103 HFESFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIP 162
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L +L + + A +L PTRELA Q+ + + +R +VGG++ Q
Sbjct: 163 ILNQLWHDQQPYYAC---VLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARD 219
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L P I++ATPGR++DHL N+ + L L++DEADRLL++ F + ++++ P +
Sbjct: 220 LMRKPHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQ 279
Query: 303 -RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
R T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L
Sbjct: 280 GRTTYLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGL---KNTFL 336
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ L ++ I+F+ TK A R+ L L A LHG+L Q QR AL+LF+
Sbjct: 337 IYLLNEFLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRR 396
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L
Sbjct: 397 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 456
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
+ I G KL V + I +++ +V L +E++ R
Sbjct: 457 ILRIEDVLGRKLPKENVDKGVILSLRDTVDKANGEVVMELNRRNKEKVAR 506
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 219/379 (57%), Gaps = 7/379 (1%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
P++ SF EL L L AC+++GY PT IQA IPLAL GRD+ G A TGSGK
Sbjct: 43 PSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGK 102
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFALP L+ L+ +P L+L PTRELA Q+ E + +R ++VGG+
Sbjct: 103 TAAFALPILQALMDKPSSFFG---LVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMD 159
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL P I+VATPGR++DHL N+ L +L L++DEADRLL++ F + ++
Sbjct: 160 MVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKI 219
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMRE 354
+++ P+ R+T LFSAT++ V+ L + SL PLR++ S + STL + + I
Sbjct: 220 LKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHK-- 277
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+++ L+ L ++ IIF T RL L A LHG L+Q+ RL AL
Sbjct: 278 -HKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALG 336
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
FR + D L+ATDVAARGLDI V V+N+ P D +++HR+GRTARAG+ G A++F
Sbjct: 337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFA 396
Query: 475 TDNDRSLLKAIAKRAGSKL 493
T D I G KL
Sbjct: 397 TQYDVEAWLRIEGALGKKL 415
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLL A E +GY PT IQ +P AL GRDI G A TGSGKTAAFALP L+
Sbjct: 18 TFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQ 77
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L PK + A +L PTRELA Q+ E + RC ++VGG+ Q AL
Sbjct: 78 KLWEDPKGLFAC---VLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAK 134
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++ HL + L + L+LDEADRLL+L F A I +++++ PK R T
Sbjct: 135 RPHIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERTT 194
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + SL+ P+R+ + STL + + M +++A L+ L
Sbjct: 195 YLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYL---LMPLKDKDAYLIYLI 251
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ + +I+F+ T A RL I+ A LHG L+Q+QRL AL F+ L+
Sbjct: 252 NSLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLV 311
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 312 ATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRI 371
Query: 486 AKRAGSKLK 494
+ G K++
Sbjct: 372 EQVVGKKME 380
>gi|396459541|ref|XP_003834383.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
gi|312210932|emb|CBX91018.1| hypothetical protein LEMA_P060520.1 [Leptosphaeria maculans JN3]
Length = 516
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 232/396 (58%), Gaps = 11/396 (2%)
Query: 105 SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
++AG ++ A AD A +F +L + L ACE L ++ PTPIQ IPLAL GRD
Sbjct: 70 TDAGPIETTTAQADVAK---KTFADLGVREELCDACENLKFTTPTPIQTQAIPLALEGRD 126
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
+ G A TGSGKTAAF LP L+ LL +P+ A+ LIL PTRELA Q+ ++ + +
Sbjct: 127 VIGLAETGSGKTAAFVLPILQALLDKPQ---ALFGLILAPTRELAYQIAQQVDALGSIIN 183
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
++C +VGG+ Q AL P IVVATPGR++DHL N+ L L ++LDEADRLL
Sbjct: 184 VKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLL 243
Query: 285 ELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STL 342
+L F + +++R+ P+ R T LFSAT++ V+ L + +L P+R+S S+ + STL
Sbjct: 244 DLDFGPVLDKILRVLPRDGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTL 303
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
+ + I +++ L+ L + IIF+ T R+ IL A LHG
Sbjct: 304 LQRYLFIPHK---HKDLYLIHLLTDNIGHPTIIFTRTVNETERIAILLRALGFGAIPLHG 360
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462
L+Q+ RL AL F+ + D L+ATDVA+RGLDI V V+N P D +YVHRVGRTA
Sbjct: 361 QLSQSARLGALNKFKTKSRDILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTA 420
Query: 463 RAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498
RAG+ G A +FVT D + I G K++ +V
Sbjct: 421 RAGKSGKAFSFVTQYDVEIWLRIEHALGKKIEEEVV 456
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 226/390 (57%), Gaps = 8/390 (2%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
PA G +F L + +PL AC A+G++KPT IQ IP AL GRD+ G A TGSGK
Sbjct: 25 PAKGVEDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGK 84
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
T AFALP L+ LL +P+R+ A+ +L PTRELA Q+H + E + ++ C VVGG+
Sbjct: 85 TGAFALPVLQALLAKPQRLFAV---VLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVD 141
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL P +VVATPGR++DHL N+ + + L+LDEADR+L + F EI+++
Sbjct: 142 MMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKI 201
Query: 296 VRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353
+ + P K R+T+LFSAT+T V +L + SLT P+++ A P TL ++ + I
Sbjct: 202 LAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKVEASDKFTTPRTLVQQYLFIPAKY 261
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
++ L ++ +++F T A RL +L A LHG +TQ +RL AL
Sbjct: 262 ---KDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGAL 318
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
F+ LIATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++
Sbjct: 319 HKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAM 378
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
VT D + + + G+KL E+++
Sbjct: 379 VTQYDVEVYQRLEALLGTKLPEYKTDEETV 408
>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Bermanella marisrubri]
gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 457
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 227/366 (62%), Gaps = 6/366 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ P+++A GY+ PTPIQA IP L+GRD+ +A TG+GKTA F LP L++
Sbjct: 3 FTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQK 62
Query: 187 LLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LL PK + RVL+LTPTRELA QV + +++T IR +V GG+ Q LR
Sbjct: 63 LLDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLR 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L N ++ D L LILDEADR+L++GF +I +++RL PK+RQ
Sbjct: 123 RGVDILVATPGRLLD-LHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++ + L K + P+ +S P + + ++ + + +++N +L+ L
Sbjct: 182 NLMFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKIN---LLIDL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+K +V++FS TK A+++ A + AA +HGN +Q R AL F+ + L
Sbjct: 239 LAKEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + VIN+ P +YVHR+GRTARAG +G A++FV+ ++ LL
Sbjct: 299 VATDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLAD 358
Query: 485 IAKRAG 490
I G
Sbjct: 359 IQNFIG 364
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/372 (42%), Positives = 217/372 (58%), Gaps = 10/372 (2%)
Query: 107 AGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
AGD + D +F +L + L ACE+LGY PTPIQ IP AL GRD+
Sbjct: 46 AGDVE-----VDAEDVAPKTFKDLGVIDSLCEACESLGYKSPTPIQQESIPPALAGRDLI 100
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
G A TGSGKTAAFALP L+ LL +P+ + L+L PTRELA Q+ E + +R
Sbjct: 101 GLAETGSGKTAAFALPILQALLDKPQPLFG---LVLAPTRELAYQISKSFEGLGILISVR 157
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286
C ++VGG+ Q AL P I+VATPGR++DHL N+ L L L++DEADRLL+L
Sbjct: 158 CAVIVGGMDMVTQSIALGKKPHIIVATPGRLLDHLENTKGFSLRALKYLVMDEADRLLDL 217
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346
F + +++++ P+ R+T LFSAT++ V+ L + SL PLR+ S + T++ +
Sbjct: 218 DFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLRDPLRVQI--STNKYQTVSTLL 275
Query: 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ +++ L+ L + I+F+ T RL IL A LHG L+Q
Sbjct: 276 QSYLFIPHPHKDTYLIYLLNDFAGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQ 335
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+ RL AL FR + L+ATDVAARGLDI V V+NY P D +Y+HRVGRTARAG+
Sbjct: 336 SARLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGK 395
Query: 467 EGYAVTFVTDND 478
G+A++ VT D
Sbjct: 396 SGHAISIVTQYD 407
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 222/367 (60%), Gaps = 11/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA FALP ++
Sbjct: 67 FADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQM 126
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELAVQV ++ AQ T +R +V GG+ K Q
Sbjct: 127 LLAHASTSTSPARHP-VRALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMKGQT 185
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
L++ +IV+ATPGR++DH+ ++ L + +L++DEADR+L++GF ++ ++ L P
Sbjct: 186 VILKAGVEIVIATPGRLLDHVEQK-NISLGQVQMLVMDEADRMLDMGFLPDLQRIINLLP 244
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+RQ ++FSAT + ++ +L LT P+ + S + +T+ V ++ E + A+
Sbjct: 245 AKRQNLMFSATFSPEIKKLANTFLTNPVTIEVARSNQTADKVTQVVYKVP---ENQKHAL 301
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L + +VIIFS TK A RL +KA +HG+ TQ +R+ ALE F+K
Sbjct: 302 TAHLLRQRELKQVIIFSNTKIGASRLAKGLEQEGMKAVAIHGDKTQQERMAALESFKKGE 361
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ +D D
Sbjct: 362 IDILVATDVAARGLDITDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDALSIYSDKDER 421
Query: 481 LLKAIAK 487
LL I K
Sbjct: 422 LLADIEK 428
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 218/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L ACE+L Y PT IQA IP+AL GRD+ G A TGSGKTAAFALP L+
Sbjct: 56 TFKELGIVDSLCEACESLNYKTPTSIQARSIPVALQGRDVIGLAETGSGKTAAFALPILQ 115
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+ L+L PTRELA Q+ E + +RC ++VGGL Q AL
Sbjct: 116 ALLEKPQPFFG---LVLAPTRELAAQIGQSFEALGALISLRCAVIVGGLDMVPQAIALGK 172
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL + L L L++DEADRLL++ F I ++++ P+ R+T
Sbjct: 173 KPHIIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRT 232
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
LFSAT++ V+ L + SL P R+S + + STL + V I R ++ L+ L
Sbjct: 233 YLFSATMSSKVESLQRASLRDPARVSVSSNKYQTVSTLLQHYVFIPHKR---KDTYLIYL 289
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ T A R+ IL A LHG L+Q+ RL AL F+ + L
Sbjct: 290 VNEFAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALNKFKGGSREIL 349
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+N+ P+D +Y+HRVGRTARAG+ G A++ T D + +
Sbjct: 350 VATDVAARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIYQR 409
Query: 485 IAKRAGSKL 493
I G +L
Sbjct: 410 IEAALGKEL 418
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L +C LG++ PT IQ IPLAL G+DI G A TGSGKT AFALP L+ LL P+R+
Sbjct: 6 LCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDNPQRLY 65
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L++TPTRELA Q+ E + I+C ++VGG+ Q AL P IV+ATPG
Sbjct: 66 A---LVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPHIVIATPG 122
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ L L LI+DEADR+L + F E+++++++ PK R T LFSAT+T+
Sbjct: 123 RLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTYLFSATMTKK 182
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
V +L + SL P+++ + L + + I + ++ ++L L +F I
Sbjct: 183 VAKLQRASLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKDCYLVSILNDLAGNSF----I 238
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF GT R+ +L A LHG +TQA+RL AL ++ + LIATDVA+RGL
Sbjct: 239 IFCGTCNNVQRVCLLLRHLGFHAVPLHGQMTQAKRLGALNKYKSKSRTILIATDVASRGL 298
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I + G KL
Sbjct: 299 DIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGKKLP 358
Query: 495 SRIVAEQSI 503
+ E+ +
Sbjct: 359 LHPMVEEEV 367
>gi|390167359|ref|ZP_10219350.1| putative helicase [Sphingobium indicum B90A]
gi|389590061|gb|EIM68066.1| putative helicase [Sphingobium indicum B90A]
Length = 461
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 220/369 (59%), Gaps = 6/369 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ P+LRA A Y PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 3 FTDLGLAEPILRALAAKKYGSPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSLDH 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q AL
Sbjct: 63 FARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALG 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ
Sbjct: 123 RGVDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ +++ L L P+++S P + + ++ + +M ++A+L
Sbjct: 182 NLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQM---EKQALLNLT 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV L
Sbjct: 239 IQNEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LKA
Sbjct: 299 VATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKA 358
Query: 485 IAKRAGSKL 493
I + KL
Sbjct: 359 IERTTKVKL 367
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/369 (43%), Positives = 219/369 (59%), Gaps = 6/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L +PLL + E L + PT IQ +P AL GRDI G A TGSGKTAAF LP L+
Sbjct: 18 TFESLGLIKPLLESLEQLNFKIPTEIQVEALPHALEGRDIIGVAATGSGKTAAFGLPILQ 77
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L PK + A +L PTRELA Q+ +E + RC ++VGG+ Q AL
Sbjct: 78 KLWEEPKGLFAC---VLAPTRELAYQISQQLESLGSAMGARCAVIVGGMDMPAQAIALAK 134
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL + +L ++ L+LDEADRLL+L F I ++++L PK R T
Sbjct: 135 RPHIVVATPGRLMDHLEKTKGFNLRNIKFLVLDEADRLLDLDFGTIIDKILKLIPKERTT 194
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + SL+ P+R+ + STL + + M +++A L+ L
Sbjct: 195 YLFSATMTTKVAKLQRASLSNPVRVEVSTKYQTVSTLLQYYL---LMPLKDKDAYLVYLA 251
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ + +IIF+ T A RL I+ A LHG L+Q+QRL AL F+ L+
Sbjct: 252 NTLAQNSIIIFTRTVHDASRLSIILRTLGFPAVPLHGQLSQSQRLGALGQFKSGGRRVLV 311
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++ I
Sbjct: 312 ATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRI 371
Query: 486 AKRAGSKLK 494
+ G K++
Sbjct: 372 EQVIGKKME 380
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 229/399 (57%), Gaps = 7/399 (1%)
Query: 95 DYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAA 154
D +P+ D N D S P+ A+ +F EL L L AC+ +GY PTPIQ+
Sbjct: 43 DSEPQATADDPNVKDATSETEPS--ATTAPKTFKELGLIDSLCEACDKMGYKAPTPIQSE 100
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214
IPLAL GRDI G A TGSGKTA+F LP L+ L+ +P+ + L+L PTRELA Q+
Sbjct: 101 SIPLALQGRDIIGLAETGSGKTASFVLPILQALMEKPQ---SFFGLVLAPTRELAYQISL 157
Query: 215 MIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274
E + ++R +VGG+ Q AL P I+VATPGR++DHL N+ L L
Sbjct: 158 ACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRSLKF 217
Query: 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334
L++DEADRLL++ F + +++++ P+ R+T LFSATL+ V+ L + SL+ P R+S
Sbjct: 218 LVMDEADRLLDMDFGPILDKILKVLPRERRTFLFSATLSSKVESLQRASLSNPARVSISS 277
Query: 335 SAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA 394
S ++ +R + +++ L+ L + VIIF T R+ L
Sbjct: 278 SKYATVETLQQTYLLRPYK--HKDIYLVYLLHEFIGQSVIIFMRTVHETQRVAFLLRGLG 335
Query: 395 LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454
A LHG ++Q+ RL AL FR + + L+ATDVAARGLDI V V+N+ P D +Y
Sbjct: 336 FGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAARGLDIPSVDCVLNFDLPTDSKTY 395
Query: 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+HRVGRTARAG+ G A++FVT D + + I G +L
Sbjct: 396 IHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGKEL 434
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 207/367 (56%), Gaps = 6/367 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L PL + CE LGY KP+ IQA IP AL GRD+ A TGSGKTAAFALP L+
Sbjct: 14 FSSLGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGRDLVALAQTGSGKTAAFALPILQA 73
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P A +L PTRELA Q+ + + +RC ++VGG+ Q AL
Sbjct: 74 LWNEPSPFFAC---VLAPTRELAYQISEQFQALGSTIGVRCAVIVGGMDMMTQSIALSKR 130
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR+ DHL N+ L + L++DEADRLL++ F I ++++ P+ R T
Sbjct: 131 PHIIVATPGRLQDHLENTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTILKIIPRERNTF 190
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T V +L + SL+ P+++ TL +E ++E L+ LC+
Sbjct: 191 LFSATMTTKVAKLQRASLSNPVKVEVSTKYSTVDTLVQEYCFFPFK---HKETYLVYLCN 247
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +I+F T A RL ++ A LHG LTQ+ RL AL F+ L+A
Sbjct: 248 ELAGKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGALNKFKSGGRQILVA 307
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVA+RGLDI V V+NY P Y+HRVGRTARAGR G ++T VT D LL+ I
Sbjct: 308 TDVASRGLDIPMVDYVVNYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIE 367
Query: 487 KRAGSKL 493
G K+
Sbjct: 368 GVVGKKM 374
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora
B]
Length = 447
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/368 (44%), Positives = 213/368 (57%), Gaps = 6/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L PLL A + L Y+ PT IQA +P AL GRDI G A TGSGKTAAFALP L++
Sbjct: 15 FRSLGLIEPLLEAVDQLHYTTPTEIQAEVLPHALQGRDIIGVAATGSGKTAAFALPILQK 74
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L PK + A ++ PTRELA Q+ E + +RC +VGG+ Q AL
Sbjct: 75 LWEEPKGLFAC---VMAPTRELAYQISQQFESLGSAIGVRCATIVGGMPIMDQAVALAKR 131
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVVATPGR+ DHL N+ L L L++DEADRLL++ F I +++++ PK R T
Sbjct: 132 PHIVVATPGRLNDHLENTKGFSLRGLKFLVMDEADRLLDMDFGPIIDKILKVIPKERTTY 191
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T V +L + SL+ P+R+ STL + + I V ++ L+ L +
Sbjct: 192 LFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIYLAN 248
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+A
Sbjct: 249 SLAQNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVA 308
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVA+RGLDI V VINY P Y+HRVGRTARAGR G +VT VT D L++ I
Sbjct: 309 TDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVQRIE 368
Query: 487 KRAGSKLK 494
G K++
Sbjct: 369 ATIGKKME 376
>gi|345318725|ref|XP_003430052.1| PREDICTED: probable ATP-dependent RNA helicase ddx27-like, partial
[Ornithorhynchus anatinus]
Length = 571
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 227/384 (59%), Gaps = 15/384 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ E L R +L+ LG+S PT IQ IP+AL G DI ++ TGSGKTAAF +P ++
Sbjct: 173 SWSEFKLHRLILKGIFELGFSYPTKIQCEVIPVALRGLDIIATSETGSGKTAAFLIPLVQ 232
Query: 186 RLL------------YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
RLL Y + ++ L+L PTREL Q +++ K+ + + ++ G
Sbjct: 233 RLLASCSLRHQIRQNYGKHAVYNEVKALVLFPTRELTSQCYAVFLKLTTYVSVESSMLTG 292
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G+ K QE LR P+IV +TPGR +D NS + + ++I DEADRLL++GF E
Sbjct: 293 GIPLKEQEAQLRCAPEIVFSTPGRTLDIFLNSSCIHSGSIEIVIFDEADRLLDMGFKDEC 352
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
+++ C RQ MLFSATL+ + L+ L+L P+ +S + ++L+ E ++
Sbjct: 353 ISILKCCNVERQIMLFSATLSNETKNLVSLALKSPVYISISNPSLTVASLSLEFYTLQC- 411
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
E ++EA +L LC K TS+ I+F TK AAHR+ +LF + ++ ELHGNL+Q QR +
Sbjct: 412 -EADREAAVLYLCDKICTSRTILFFQTKVAAHRMSLLFNILQMENCELHGNLSQDQRYTS 470
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
+E F++ V FL+A+++A+RGLDI V VIN P D+ YVHRVGRTAR G G A+T
Sbjct: 471 VERFKRGDVSFLLASELASRGLDIPSVHAVINVNIPFDVVRYVHRVGRTARMGSVGKAIT 530
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSR 496
T N++ LK I K + + R
Sbjct: 531 LFTKNEKPRLKKILKESSDGITLR 554
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 211/354 (59%), Gaps = 6/354 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF +L + L AC ALGY PTPIQA IPLAL RD+ A TGSGKTAAFALP L
Sbjct: 71 TSFKDLGIVDELCDACTALGYKAPTPIQAESIPLALQDRDLIALAETGSGKTAAFALPIL 130
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ LL +P+ L+L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 131 QSLLDKPQPFFG---LVLAPTRELAYQISQSFEALGSKIGVRCAVIVGGMDMVPQAIALG 187
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I+VA+PGR++DHL N+ L L L++DEADRLL+L F A I +++++ P+ R+
Sbjct: 188 KKPHIIVASPGRLLDHLENTKGFSLRALKYLVMDEADRLLDLDFGAIIDKILKVIPRERR 247
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT++ V+ L + SL PLR+S + STL + + + V+++ L+ L
Sbjct: 248 TYLFSATMSSKVESLQRASLKDPLRVSVSTKYQTVSTLIQNCLIVPL---VHKDVYLVYL 304
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ T RL IL A LHG L+Q RL AL FR L
Sbjct: 305 MNEFAGQSAIIFTRTVNETQRLAILLRSLGFGAIPLHGQLSQTARLGALNKFRAGTRKIL 364
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ATDVAARGLDI V V+NY P + +Y+HRVGRTARAG+ G+A + VT D
Sbjct: 365 VATDVAARGLDIPSVDIVLNYDLPPESKTYIHRVGRTARAGKSGHAFSIVTQYD 418
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 6/369 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F ELNL LL A + + ++KPTPIQ+ IP AL G+DI G A+TGSGKTAAFA+P L
Sbjct: 71 NTFAELNLVPDLLEAIQQMNFAKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPIL 130
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ L + + P L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 131 QALWH--AQTPYFG-LVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARDLM 187
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R
Sbjct: 188 RKPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRT 247
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +++L + SL P+R++ + L + ++ + + + +L+ L
Sbjct: 248 TYLFSATMTNKIEKLQRASLHNPVRVAVSTKYQTADNLVQSMMLVN---DGYKNTILIHL 304
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +I+F+ T A R +L + A LHG L+QAQRL +L F+ + L
Sbjct: 305 LNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSSKANIL 364
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D +
Sbjct: 365 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 424
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 425 IENALGKKL 433
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 216/370 (58%), Gaps = 6/370 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A+SF +L + P+ ACE L +S PT IQA IP AL GRD+ G A TGSGKTAAF++P
Sbjct: 24 ASSFSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPI 83
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ L P+ + A IL PTREL+ Q+ IE + +RC +VGG+ Q AL
Sbjct: 84 LQGLWDDPRPLFAC---ILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIAL 140
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P ++VATPGR+ DHL N+ L L L++DEADRLL+L F I +L++ PK R
Sbjct: 141 SKRPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKER 200
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
+TMLFSAT+T V +L + SL P+R+ STL + + M +++ L+
Sbjct: 201 RTMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYL---FMPFAHKDTYLVH 257
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ +I+F+ T A RL +L L A LHG L+Q RL AL F+
Sbjct: 258 LANEQVGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSI 317
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ TDVAARGLDI V V+N+ P Y+HRVGRTARAGR+G +VT VT D LL+
Sbjct: 318 MVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQ 377
Query: 484 AIAKRAGSKL 493
I G +L
Sbjct: 378 RIEAAIGKRL 387
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 220/381 (57%), Gaps = 8/381 (2%)
Query: 115 APADGASFHAN--SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
+P + ++ AN SF + L PLL A E LGY PT IQA +P AL GRDI G A TG
Sbjct: 3 SPEEASTSAANPPSFKSIGLIDPLLEAVEQLGYKTPTDIQAEALPHALEGRDIIGVASTG 62
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
SGKTAAFALP ++ L PK + A ++ PTRELA Q+ E + +RC +++G
Sbjct: 63 SGKTAAFALPIIQALWNDPKGLFAC---VIAPTRELAYQISQQFEALGSGIGVRCAVIIG 119
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G+ Q AL P I+VATPGR+ HL N+ L L +LDEADRLL++ F +I
Sbjct: 120 GMDVVSQSIALAKKPHIIVATPGRLNYHLENTKGFSLRGLKFFVLDEADRLLDMDFGPDI 179
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
+++++ PK R T LFSAT+T V +L + SL P+R+ STL + + M
Sbjct: 180 DKILKVIPKERTTYLFSATMTTKVAKLQRASLQNPVRVEVSSKYSTVSTLLQYYL---FM 236
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
++E L++L + + ++IF+ T A +L I+ A LHG L+Q+QRL A
Sbjct: 237 PLSHKEVHLVNLANTLAQNSMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGA 296
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T
Sbjct: 297 LSKFKSGGRSILVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSIT 356
Query: 473 FVTDNDRSLLKAIAKRAGSKL 493
VT D L+ I K G K+
Sbjct: 357 LVTQYDIELIHRIEKVTGKKM 377
>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 477
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/353 (41%), Positives = 217/353 (61%), Gaps = 6/353 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L LL A +++ ++KPTPIQA IP AL G+D+ G A+TGSGKTAAFA+P L+
Sbjct: 66 SFTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQ 125
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + ++P L+L+PTRELA Q+ + + +R C +VGG+ Q L
Sbjct: 126 SLWH--DQLP-YYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMR 182
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL ++ L +L L++DEADRLL+L F E+ +++R+ P+ R T
Sbjct: 183 KPHVIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNT 242
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+R++ + L + ++ + + + L+ L
Sbjct: 243 YLFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLV---SDGYKNTYLVHLL 299
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +IIF+ T + R +L + A LHG L+Q+QRL +L F+ + L+
Sbjct: 300 NEFVGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILV 359
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ VT D
Sbjct: 360 ATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYD 412
>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
Length = 461
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 224/370 (60%), Gaps = 8/370 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ P+L+A A Y+ PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 3 FTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSLDH 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q AL
Sbjct: 63 FARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALG 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ
Sbjct: 123 RGVDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ +++ L L P+++S P + + ++ + +M ++ LL+L
Sbjct: 182 NLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQM----EKQALLNL 237
Query: 365 CSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
++ + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV
Sbjct: 238 TIRSEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKL 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LK
Sbjct: 298 LVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357
Query: 484 AIAKRAGSKL 493
AI + KL
Sbjct: 358 AIERTTKVKL 367
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 227/368 (61%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +LN++ P+L+A E GY+ PTPIQ IP ALTG+DI G A TG+GKTAAFA+P ++
Sbjct: 2 TFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L R +I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L
Sbjct: 62 HLQVLKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHK 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N + LD++ +LDEADR+L++GF +I L+ PK +QT
Sbjct: 122 GVDILVATPGRLLD-LMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ + + L L +P++++ P + T+ + + + + + +L+S+
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIYFVEKKE---KSKLLISIL 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
KT V++FS TK A R+ + A + + +HGN +Q R ALE F+ + +I
Sbjct: 238 HKTEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDI 357
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 358 QKLTGKKL 365
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/407 (40%), Positives = 233/407 (57%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL+L LL+AC+ L Y+KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 83 SFSELDLVPELLQACKNLNYTKPTPIQSRSIPPALKGNDIIGLAQTGSGKTAAFAIPILN 142
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 143 SLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 199
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 200 KPHIIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRT 259
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + ++ L+ L
Sbjct: 260 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KDTYLVYL 316
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L
Sbjct: 317 LNEFIGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKSIL 376
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 377 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 436
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V ++ I + +++ +V + +E+ LR
Sbjct: 437 IEEVLGKKLPKESVDKEMILHFRDSVDKANGEVIMEMNRRNKEKQLR 483
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 220/369 (59%), Gaps = 6/369 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F ELNL LL A + + ++KPTPIQ+ IP AL G+DI G A+TGSGKTAAFA+P L
Sbjct: 68 NTFAELNLVPDLLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIPIL 127
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ L + + P L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 128 QALWH--AQTPYFG-LVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARDLM 184
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P IVVATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R
Sbjct: 185 RKPHIVVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPKRT 244
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +++L + SL P+R++ + L + ++ + + + +L+ L
Sbjct: 245 TYLFSATMTNKIEKLQRASLHNPVRVAVSTKYQTADNLVQSMMLVN---DGYKNTILIHL 301
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +I+F+ T A R +L + A LHG L+QAQRL +L F+ + L
Sbjct: 302 LNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSGKANIL 361
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D +
Sbjct: 362 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 421
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 422 IENALGKKL 430
>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea
blandensis MED297]
gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
MED297]
Length = 433
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 6/366 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L+ P+L+A GY+ PTPIQA IP L+GRD+ +A TG+GKTA F LP ++
Sbjct: 3 FSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIIQH 62
Query: 187 LLY--RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L+ RP + RVL+LTPTRELA QV + A++TD+R +V GG+ Q LR
Sbjct: 63 LITENRPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQKLR 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L + ++D DL VL+LDEADR+L++GF +I ++RL P +RQ
Sbjct: 123 RGVDILVATPGRLLD-LHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S P + ++V+ + + ++ A+L+ L
Sbjct: 182 NLMFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKT---ALLIDL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
K +V++FS TK A+R+ A + AA +HGN +Q R AL F+ + L
Sbjct: 239 LKKETWHQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + VIN+ P YVHR+GRT RAG +G A++F + ++ LL A
Sbjct: 299 VATDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLAA 358
Query: 485 IAKRAG 490
+ G
Sbjct: 359 VQNFIG 364
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 87 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 264 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 319
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 320 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 379
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 380 IEHLIGKKL 388
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 5/377 (1%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
AD A SF +L + L AC LGY+KPTPIQA IP AL RDI G A TGSGKT
Sbjct: 44 ADAAEEVTKSFKDLGVVDSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKT 103
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAFALP ++ LL +P+ A L+L PTRELA Q+ E + +R ++VGGL
Sbjct: 104 AAFALPVIQALLEKPQ---AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDM 160
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q AL P +++ATPGR++DHL + L L L++DEADRLL++ F I +++
Sbjct: 161 VAQAIALGKKPHVIIATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKIL 220
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356
+ P+ R+T LFSAT++ ++ L + SL P+R+S S+ + T++ + +
Sbjct: 221 KFVPRERRTFLFSATMSSKIESLQRASLRDPVRVSI--SSNKYQTVSTLLQYYLFIPHTQ 278
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
++ L+ L ++ K++IF+ T RL IL A LHG L Q RL AL F
Sbjct: 279 KDVHLIYLLNEHAGKKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGALNKF 338
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
R L+ATDVAARGLD+ V V+N+ P+D +++HR+GRTARAG+ G A++ VT
Sbjct: 339 RTGTRSILVATDVAARGLDVPAVDVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLVTQ 398
Query: 477 NDRSLLKAIAKRAGSKL 493
D + I G KL
Sbjct: 399 YDLEIFLRIEAALGKKL 415
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 87 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 264 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 319
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 320 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 379
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 380 IEHLIGKKL 388
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 87 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 144 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 264 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 319
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 320 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 379
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 380 IEHLIGKKL 388
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 220/378 (58%), Gaps = 6/378 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L ++ L AC+ LG+ PT IQ IP+AL G+D+ G A TGSGKT AFALP L+
Sbjct: 38 SFKDLGVTEVLCEACDQLGWKSPTKIQIEAIPVALQGKDVIGLAETGSGKTGAFALPILQ 97
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 98 SLLASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAK 154
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDHL N+ L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 155 KPHVVIATPGRLIDHLENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRT 214
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + L + + I ++ L+S+
Sbjct: 215 FLFSATMTKKVQKLERAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKY---KDCYLVSIL 271
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + IIF T A R+ +L + A LHG ++Q +RL AL F+ + L+
Sbjct: 272 NELAGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 331
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 332 ATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 391
Query: 486 AKRAGSKLKSRIVAEQSI 503
G KL + E+ +
Sbjct: 392 ETLIGKKLPAFPTQEEEV 409
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 478
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 226/400 (56%), Gaps = 6/400 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF + L +L ACE L Y+KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L+
Sbjct: 73 SFNDFGLVPEILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQ 132
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L ++ +L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 133 SLY---EQATPFFCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ L L LI+DEADRLL+L F I ++++L P+ R T
Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+++S + + ST+ + + + + + L+ L
Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSV---SSKYSTVDSLIQSLMVVPDGYKNTFLIYLL 306
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+K +IIF+ T A R +L L A LHG L Q+QRL AL F+ + L+
Sbjct: 307 NKYQNKSIIIFTRTCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILV 366
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VIN+ P D +Y+HRVGRTARAGR G +++ VT D L+ +
Sbjct: 367 ATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRV 426
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEER 525
G KL + I +E+ ++ ++E +
Sbjct: 427 ESVLGMKLPKDVPPRDEILSLHNTVEKFHNEAVRQIKEHQ 466
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 235/425 (55%), Gaps = 7/425 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LN+ LL+AC+ L ++KPTPIQA IP AL G+DI G A TGSGKTAAFALP L
Sbjct: 82 SFSGLNIVPELLQACKNLNFTKPTPIQAKAIPPALEGKDIIGLAQTGSGKTAAFALPILN 141
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + A IL+PTRELA Q+ + + R +VGG++ Q L
Sbjct: 142 RLWHDQSPYYAC---ILSPTRELAQQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMR 198
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 199 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRT 258
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 259 TYLFSATMTSKIDKLQRASLTDPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYL 315
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L
Sbjct: 316 LNEFIGKTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSIL 375
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 376 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 435
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
I + G KL V + +++ +V L +E+I R + A M
Sbjct: 436 IEEVLGKKLPKENVDRDLVMSLRNSVDKANGEVIMELNRRNKEKIARSGGRRSRMAARMD 495
Query: 545 AHKEE 549
+EE
Sbjct: 496 MDREE 500
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 227/373 (60%), Gaps = 5/373 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS L++A + GY PTPIQ IP L G+D+ SA TG+GKTA F LP L+
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P R +R LILTPTRELA QVH ++ +F D+R ++ GG++ K Q + LR+
Sbjct: 63 LSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRN 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
D++VATPGR+ID L N + L + +L+LDEADR+L++GF +I ++++L PK+RQT
Sbjct: 123 GVDVLVATPGRLID-LNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT + ++ L L P+ + + P + ++V R+ + ++ + +L+ L
Sbjct: 182 LLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTD---LLIKLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S+ +V++FS TK A++L A + AA +HGN +Q R +AL F+ V L+
Sbjct: 239 SEGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A+RGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LK I
Sbjct: 299 ATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKDI 358
Query: 486 AKRAGSKLKSRIV 498
K G K+ I+
Sbjct: 359 EKLIGDKIPMDII 371
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 236/411 (57%), Gaps = 9/411 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L AC +LGY PT IQ IP+AL G+D+ G A TGSGKTAAFALP L+
Sbjct: 89 TFAELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPILQ 148
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL + L+L PTRELA Q+ E + +++C ++VGG+ Q+ AL
Sbjct: 149 ALLEKQDHYFG---LVLAPTRELAYQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAK 205
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ L L L++DEADRLL+L F + +++++ P+ R+T
Sbjct: 206 KPHIIVATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDLDFGPILDKILQVLPRERRT 265
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRI-RRMREVNQEAVLLS 363
MLFSAT++ +D L + +L P+R+S S+ + L + + I + +++ L+
Sbjct: 266 MLFSATMSTKLDNLTRAALQSPVRVSISSSSYQTVKNLKQSYIFIPHKFKDI----YLVY 321
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ IIF+ T R+ L A LHG L Q+ RL AL FR D
Sbjct: 322 LVNEFAGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGSRDI 381
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARGLDI V V+NY P D +YVHRVGRTARAG+ G A++ VT D + +
Sbjct: 382 LVATDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVYQ 441
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
I K G KL + + +++ +++ + ++ E E+R +K +
Sbjct: 442 RIEKALGKKLAEFGTEKDEVMVFAQRVQEAQRVAVQEMKNEHEKRGNKKGQ 492
>gi|334344694|ref|YP_004553246.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334101316|gb|AEG48740.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 460
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 221/370 (59%), Gaps = 8/370 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ P+LRA A Y PTPIQA IP+ L G+D+CG A TG+GKTAAFALP+L+
Sbjct: 3 FTDLGLAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSLDH 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + +V GG+ Q L
Sbjct: 63 FARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRTLG 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L PK RQ
Sbjct: 123 RGVDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ +++ L L P+++S P + + ++ + +M ++ LL+L
Sbjct: 182 NLFFSATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQM----EKQALLNL 237
Query: 365 CSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR HV
Sbjct: 238 TIRNEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKL 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R LK
Sbjct: 298 LVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLK 357
Query: 484 AIAKRAGSKL 493
AI + KL
Sbjct: 358 AIERTTKVKL 367
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 220/373 (58%), Gaps = 7/373 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 184 RLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTYLIYL 357
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ TK A RL L L A LHG+L Q QR+ AL+LF+ L
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSIL 417
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 485 IAKRAGSKLKSRI 497
I + G + ++
Sbjct: 478 IEEVLGKNYRRKV 490
>gi|226295334|gb|EEH50754.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
Pb18]
Length = 755
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/260 (51%), Positives = 182/260 (70%), Gaps = 5/260 (1%)
Query: 111 KSFFAPADGASFHAN-----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
K+FFAP D S + N SF +LSRP+LR ++G++ PTPIQ IP+AL G+D+
Sbjct: 280 KAFFAPEDTTSTNDNLETAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDV 339
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
G A+TGSGKT AF +P LERLLYRP+++P RV IL PTRELAVQ ++ K+A +TDI
Sbjct: 340 VGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCCNVATKLATYTDI 399
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285
C +VGG S + QE L+ PD+++ATPGR IDH+RNS S +D L +L+LDEADR+LE
Sbjct: 400 TFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLE 459
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE 345
GF+ E++E++ PK RQTMLFSAT+T +D+LI++ L +P+RL D + TL +E
Sbjct: 460 DGFADELNEILTTIPKSRQTMLFSATMTNTIDKLIRVGLNRPVRLMVDAQKQTVGTLVQE 519
Query: 346 VVRIRRMREVNQEAVLLSLC 365
VR+R RE + L++LC
Sbjct: 520 FVRLRPGREDKRLGYLIALC 539
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 96/135 (71%), Gaps = 3/135 (2%)
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---G 490
LDI GV+TVINY P+ Y+HRVGRTARAGR G A T ++DR ++KA K G
Sbjct: 544 LDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAESDRKVVKAAVKTGRAQG 603
Query: 491 SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEI 550
+K+ SR++ KW+ +E+MED+V IL+EE+EE+ L +AEME T+ N+I+H+++I
Sbjct: 604 AKIVSRLIDVAEADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISHEKDI 663
Query: 551 FARPKRTWFVTEKEK 565
+RPKRTWF +EKEK
Sbjct: 664 MSRPKRTWFESEKEK 678
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 5/371 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LLRA GY+ P+PIQA IPL L +D+ SA TG+GKTA F LP L+
Sbjct: 2 SFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +P R IR LILTPTRELA QV++ +++ + F DIR ++ GG++ + Q LR
Sbjct: 62 LLSQQPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ DI+VATPGR++D L + ++ L + +L+LDEADR+L++GF +I ++ L PKRRQ
Sbjct: 122 NGVDILVATPGRLLD-LHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ +L + L P+ + A P + ++V ++ + R+ +L+ L
Sbjct: 181 NLLFSATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTE---LLIKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ S+V++F+ TK A+RL + AA +HGN TQ R +AL+ F+K + L
Sbjct: 238 ISEGNWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRIL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN+ P YVHR+GRT RAG G A++ V+ + ++
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRG 357
Query: 485 IAKRAGSKLKS 495
I K KL S
Sbjct: 358 IEKLLDEKLHS 368
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 159/369 (43%), Positives = 217/369 (58%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +LNL L+ AC+ L + KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L
Sbjct: 73 SFNDLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILN 132
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + A +L PTRELA Q + + +R +VGG++ Q L
Sbjct: 133 RLWEDKQPYYAC---VLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMR 189
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + +++++ P + R
Sbjct: 190 KPHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRT 249
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT+P++ + + TL + ++ + + L+ L
Sbjct: 250 TYLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGL---KNTYLIYL 306
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ VIIF+ TK A RL L L A LHG+L Q QR AL+LF+ L
Sbjct: 307 LNENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSIL 366
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 367 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 426
Query: 485 IAKRAGSKL 493
I + G KL
Sbjct: 427 IEEVLGKKL 435
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 226/383 (59%), Gaps = 6/383 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + ++ AC+ LG+ PT IQ IP AL G+DI G A TGSGKTAAF++P L+
Sbjct: 14 TFEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQ 73
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P + L+L PTRELAVQ+ IE + ++C ++VGG+ T Q AL
Sbjct: 74 ALLAKPSGLFG---LVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAK 130
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++ HL N+ +L L ++DEADRLL + F EI+ ++++ PK R T
Sbjct: 131 KPHIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNT 190
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + SL P+++ TL +E + I ++E L +
Sbjct: 191 FLFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYK---HKECYLTYIL 247
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + VIIF+ T A+ +L I+ + KA ++G + Q++RL +L F+ Q +D L+
Sbjct: 248 NELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILV 307
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P Y+HRVGRTARAGR G AVT VT D + I
Sbjct: 308 ATDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRI 367
Query: 486 AKRAGSKLKSRIVAEQSITKWSK 508
KL+ ++S+ +S+
Sbjct: 368 EHALEQKLEEFPTEQESVLVFSE 390
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IP+AL GRDI G A TGSGKT AFALP L
Sbjct: 24 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 84 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 141 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 201 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 260
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 261 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 316
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 317 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 376
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 377 IEHLIGKKL 385
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 231/404 (57%), Gaps = 8/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG+ PT IQ +P+AL G+D+ G A TGSGKT AFALP L+
Sbjct: 39 TFKDLGVTEVLCEACDQLGWKSPTKIQIEAVPVALQGKDVIGLAETGSGKTGAFALPILQ 98
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 99 SLLASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAK 155
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 156 KPHIVIATPGRLIDHLENTKGFTLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRT 215
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + L + + I + ++ ++L L
Sbjct: 216 FLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYIFIPSKYKDCYLVSILNDL 275
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F IIF T A R+ +L + A LHG ++Q +RL AL F+ + L
Sbjct: 276 AGNSF----IIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSKSRSVL 331
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 332 LATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 391
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL + E+ + + + + + ++E+ E+R
Sbjct: 392 IESLIGKKLPAFPTQEEEVMMLVERVSEAQRFARLEMKEQGEKR 435
>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160358661|sp|A7TS37.1|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 506
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 161/407 (39%), Positives = 231/407 (56%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L+L L+ AC+ L ++KPTPIQA IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 87 SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN 146
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL + + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 147 RLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMR 203
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 204 KPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRT 263
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 264 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL---KNTYLIYL 320
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +I+F+ TK A R+ L L A LHG+L Q QR +L+LF+ L
Sbjct: 321 MNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSIL 380
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 381 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 440
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I G KL V + +I +++ +V L +E+I R
Sbjct: 441 IEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNKEKIAR 487
>gi|17555296|ref|NP_499069.1| Protein T26G10.1 [Caenorhabditis elegans]
gi|465975|sp|P34580.1|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
gi|3880293|emb|CAA82362.1| Protein T26G10.1 [Caenorhabditis elegans]
Length = 489
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 216/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL
Sbjct: 105 SLLDHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 161
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ P+ R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRT 221
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + SL P R+S K L + + + +E L+ L
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKY---KETYLVYLL 278
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
Query: 486 AKRAGSKL 493
G KL
Sbjct: 399 EANLGKKL 406
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 224/381 (58%), Gaps = 10/381 (2%)
Query: 118 DGASFHA-----NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
DGAS +F EL L L AC+ +GY PTPIQ+ IPLAL GRDI G A TG
Sbjct: 60 DGASSETEPSAPKTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETG 119
Query: 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
SGKTA+F LP L+ L+ +P+ L++ PTRELA Q+ E + ++R +VG
Sbjct: 120 SGKTASFVLPILQALMEKPQPFFG---LVMAPTRELAYQISLACESLGATINVRSTTLVG 176
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
G+ Q AL P I+VATPGR++DHL N+ L +L L++DEADRLL++ F +
Sbjct: 177 GMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKFLVMDEADRLLDMDFGPIL 236
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
+++++ P+ R+T LFSATL+ V+ L + SL+ P R+S S+K + T + I R
Sbjct: 237 DKILKVLPRERRTFLFSATLSSKVESLQRASLSNPARVSIS-SSKYATVETLQQTYILRP 295
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+ +++ L+ L + VIIF T R+ L A LHG ++Q+ RL A
Sbjct: 296 YK-HKDIYLVYLLHEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGA 354
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L FR + + L+ATDVAARGLDI V V+N+ P D +Y+HRVGRTARAG+ G A++
Sbjct: 355 LGKFRSKSREILVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAIS 414
Query: 473 FVTDNDRSLLKAIAKRAGSKL 493
FVT D + + I G +L
Sbjct: 415 FVTQYDVEIWQRIEAAMGKEL 435
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 218/368 (59%), Gaps = 2/368 (0%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL + L AC LG++KPT IQ IP+AL G+DI G A TGSGKTAAFALP L+
Sbjct: 84 SFAELGVIDQLCDACANLGFTKPTAIQKESIPIALEGKDIIGLAETGSGKTAAFALPILQ 143
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ P+ L+L PTRELA Q+ E + ++RC ++VGG+ Q AL
Sbjct: 144 ALMAAPQHEQHKFGLVLAPTRELAYQISQQFEALGSLINVRCAVLVGGMDMVPQAIALNK 203
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DHL N+ + L L++DEADRLL+L F + +++++ P +R+T
Sbjct: 204 NPHIVVATPGRLLDHLENTKGFSMRSLKYLVMDEADRLLDLDFGPILDKILQVLPSKRRT 263
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT++ ++ L + +L P+R+S S+ + T+ + R + ++ L+ L
Sbjct: 264 MLFSATMSTKLNNLTRAALQNPVRVSISSSSYQ--TVKNLMQRYIFIPHKFKDIYLVYLL 321
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F+ T R+ L A LHG + Q+ RL AL FR + L+
Sbjct: 322 NEFAGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGSREILV 381
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT D + + I
Sbjct: 382 ATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRI 441
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 442 EKALGKKL 449
>gi|381199589|ref|ZP_09906736.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
gi|427407897|ref|ZP_18898099.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
gi|425713860|gb|EKU76872.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
Length = 476
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 230/377 (61%), Gaps = 14/377 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS P+++A A Y++PTPIQ IP+ L GRD+CG A TG+GKTAAFALP+L+
Sbjct: 3 FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL
Sbjct: 63 FARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRALS 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ DIVVATPGR++D L + + + D + +LDEAD+++++GF + + +L P+ RQ
Sbjct: 123 AGVDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLL 362
+ FSAT+ ++++ L L P+++S P + T E VR +++ VNQ + LL
Sbjct: 182 NLFFSATMPKEIEALAGQFLNDPVKVSVAPQ-----STTAERVR-QQLTFVNQAEKQALL 235
Query: 363 SLCSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ KT + +IF+ TK A R+ A ++A +HGN +QAQR AL+ FR H
Sbjct: 236 HIVLKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHC 295
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG +G A++FV D++R
Sbjct: 296 KLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPY 355
Query: 482 LKAIAKRAGSKLKSRIV 498
LKAI + +K+K IV
Sbjct: 356 LKAIER--ATKVKPEIV 370
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/385 (40%), Positives = 230/385 (59%), Gaps = 11/385 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L+ +L+A + LGYS PTPIQ+ IP+ L G+D+ G+A TG+GKTA ++LP L+
Sbjct: 17 FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76
Query: 187 LLY------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LLY P R P +R LIL PTRELA QV+ + K A++T +R +V GG+ Q
Sbjct: 77 LLYYANASMSPARHP-VRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQT 135
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR+ +I++ATPGR++DH++ +V+L +L+LDEADR+L++GF ++ +V L P
Sbjct: 136 GILRAGAEILIATPGRLLDHIQQK-NVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLP 194
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ +LFSAT + ++ +L L +P+ + +T+ V RI + +
Sbjct: 195 KKRQNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEY 254
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL L + +V+IFS TK A RL LKAA +HG+ TQA+R+ AL+ F++ +
Sbjct: 255 LLRLHKR---EQVLIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGN 311
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATDVAARGL I + VIN+ P YVHR+GRT RAG G A++ + D
Sbjct: 312 ITVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEK 371
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITK 505
LL I K KL + + I K
Sbjct: 372 LLNEIEKLIKRKLPVHSIPDPEIRK 396
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 231/403 (57%), Gaps = 6/403 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG+ PT IQ IP+AL G+D+ G A TGSGKT AFALP L+
Sbjct: 40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQ 99
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 100 SLLASPQRL---HTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAK 156
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDH+ N+ L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 157 KPHIVIATPGRLIDHMENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERRT 216
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + L + V I ++ L+S+
Sbjct: 217 FLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKY---KDCYLVSIL 273
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T A R+ ++ + A LHG ++Q +RL AL F+ + L+
Sbjct: 274 NELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 333
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 334 ATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 393
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
G KL + E+ + + + + + ++E+ E+R
Sbjct: 394 ESLIGKKLPAFPTQEEEVMMLVERVSEAQRFARVEMKEQGEKR 436
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/407 (40%), Positives = 231/407 (56%), Gaps = 7/407 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL L++AC+ L Y KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L
Sbjct: 68 SFTELNLVPELIQACKNLNYEKPTPIQSKSIPPALNGKDIIGLAQTGSGKTAAFAIPILN 127
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + ++P IL+PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 128 SLWH--DQLPYY-ACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMR 184
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 185 KPHIIIATPGRLMDHLENTRGFSLRKLRYLVMDEADRLLDMEFGPVLDRILKILPTEGRT 244
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYL 301
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L
Sbjct: 302 LNEFHGKTFIIFTRTKANAERIAGLANLLEFNATALHGDLNQNQRTGALDLFKAGKRSIL 361
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I + G KL V + I +++ +V L +E+ R
Sbjct: 422 IEEVLGKKLPKESVDKDIILSLRDSVDKANGEVVMELNRRSKEKAAR 468
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 238/404 (58%), Gaps = 22/404 (5%)
Query: 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFAL 181
+F L LSR +L+A + +G+ +PTPIQA IP+ L G D+ G A TG+GKTAAF +
Sbjct: 2 LETKTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGI 61
Query: 182 PTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
P LE+L P R A++ L++TPTRELA+QV I K+ +F D+R V GG S Q
Sbjct: 62 PILEKL--NP-RYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIG 118
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
AL+ +VV TPGR++DH+ N ++ L L +L+LDEAD +L++GF +I +++ P+
Sbjct: 119 ALKRGVQVVVGTPGRLLDHI-NRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPE 177
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RQT+LFSAT+ ++ +L + L P RL A + E+V EV ++ L
Sbjct: 178 TRQTLLFSATMPHEIQQLARKYLKNP-RLVAVSKDELTVPSIEQV-----YYEVREKTKL 231
Query: 362 LSLCSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
SLC T V IIF TK+ L +A LHG+LTQAQR + + F+
Sbjct: 232 ESLCRVLETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKN 291
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VD+L+ATDVAARGLDI V VINY P+D YVHR+GRT RAGR G A+TF+ +
Sbjct: 292 GQVDYLVATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEE 351
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE----QMEDQVA 518
L+ I K G++ +A +++ + I E QM D+VA
Sbjct: 352 YRQLRLIEKIIGAR-----IARKNLPSIADIFERQKVQMIDKVA 390
>gi|393245773|gb|EJD53283.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 215/359 (59%), Gaps = 8/359 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L PLL A + L +++PT IQAA +P AL G DI G A TGSGKTAAFALP L+
Sbjct: 26 SFKELGLIEPLLEALDKLSFARPTEIQAAALPHALAGHDIIGVAETGSGKTAAFALPILQ 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P+ + A + PTRELA Q+ E + +R +++GG+ Q+ AL
Sbjct: 86 KLWEDPRPLFAC---CIAPTRELAFQIAQSFEALGGSLGVRVAVIIGGVKEIEQQIALSK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VA PGR+ HL N+ L L L+LDEADRLL+L F +I +L+++ PK R T
Sbjct: 143 RPHIIVAAPGRLNWHLENTKGFSLRTLKYLVLDEADRLLDLDFGKDIDKLLKVLPKERHT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V++L + SL+ P R++ STL + + + +EVN L+ L
Sbjct: 203 YLFSATMTDKVEKLQRASLSNPKRVAVSSKYSTVSTLLQYYLLVPLPQKEVN----LIYL 258
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C+ +IIF+ T+ A R+ I+ A LHG L+Q+ RL AL F+ L
Sbjct: 259 CNSLAEKSIIIFTRTQHDAQRVSIILRTLGFSAVPLHGALSQSARLGALAKFKAGGRKIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
+ATDVA+RGLDI V VINY P + Y+HRVGRTARAGR G +VTFVT D + K
Sbjct: 319 VATDVASRGLDIPHVDIVINYDVPTNSKDYIHRVGRTARAGRAGKSVTFVTQYDVEVFK 377
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IP+AL GRDI G A TGSGKT AFALP L
Sbjct: 24 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 84 ALLDTPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 141 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 201 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 260
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 261 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 316
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 317 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 376
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 377 IEHLIGKKL 385
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 230/404 (56%), Gaps = 7/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +LNL L++AC+ L ++KPTPIQA IP AL G D+ G A TGSGKTAAFA+P L
Sbjct: 74 SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILN 133
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L + A +L PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 134 KLWEDQQPYYAC---VLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMR 190
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L +L L++DEADRLL++ F + ++++ P K R
Sbjct: 191 KPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRT 250
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 251 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNTFLIYL 307
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ VIIF+ TK A RL L L A LHG+L Q QR AL+LF+ L
Sbjct: 308 LNEFIGKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 367
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 368 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 427
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I + G KL V + I +++ +V + +E+
Sbjct: 428 IEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEK 471
>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
Length = 372
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 226/368 (61%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +LN++ P+L+A E GY+ PTPIQ IP ALTG+DI G A TG+GKTAAFA+P ++
Sbjct: 2 TFKDLNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L +R +I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L
Sbjct: 62 HLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHK 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I L+ PK +QT
Sbjct: 122 GVDILVATPGRLLD-LMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ + + L L +P++++ P + T+ + V + + + +L+S+
Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKE---KSKLLISIL 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K V++FS TK A R+ + A + + +HGN +Q R ALE F+ + +I
Sbjct: 238 HKAEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+ I
Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDI 357
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 358 QKLTGKKL 365
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 228/399 (57%), Gaps = 9/399 (2%)
Query: 118 DGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
DG F + SF EL + + A EA+G+S+P+ IQ IP L G+DI G A TGSGKT
Sbjct: 23 DGEGFRGSKSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKT 82
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AF +P L+ LL P+R+ A L+L PTRELA Q+ E + ++C VVGG+
Sbjct: 83 GAFVIPILQSLLRNPQRLYA---LVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDM 139
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q+ AL P +V+ATPGR++DHL N+ L + L+LDEADR+L + F EI+++V
Sbjct: 140 MQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIV 199
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREV 355
+L P R T LFSAT+T V +L + SL P+++ P TL + + I + ++
Sbjct: 200 QLMPAERNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDC 259
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
VL + ++ V+IF+ T ++ ++ +A LHG + Q RL AL
Sbjct: 260 YLAYVLNEVAGQS----VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNK 315
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+ + + L+ TDVA+RGLDI V VINY P Y+HRVGRTARAGR G A++FVT
Sbjct: 316 FKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVT 375
Query: 476 DNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 514
D L + I G+KL + E+++ S+ + + +
Sbjct: 376 QYDVELYQRIEHLLGTKLDAYPCEEETVLVMSERVNEAQ 414
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/427 (37%), Positives = 242/427 (56%), Gaps = 7/427 (1%)
Query: 98 PEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
P D+ N T++ +P +F L + L ++C L + PTPIQ IP
Sbjct: 20 PSSSDN-ENVHSTRNSQSPGPSNDDSPRTFASLGIIPELCQSCATLAFKAPTPIQVEAIP 78
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217
AL GRD+ G A TGSGKTAAF+LP L++L P+ A LIL PTRELA Q+ +
Sbjct: 79 SALQGRDVIGLAQTGSGKTAAFSLPILQKLWENPQPFFA---LILAPTRELAYQISQQVT 135
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
+ +R ++VGG+ Q AL P ++VATPGR++DHL N+ L ++ L++
Sbjct: 136 SLGSPLGVRTAVIVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFSLKNVKFLVM 195
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEADRLL++ F I +++++ PK R T LFSAT+T V +L + SL KP+R+ A
Sbjct: 196 DEADRLLDMDFGPIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEV---AT 252
Query: 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
+ ST++ + + ++ LL + ++ + +IIF+ T A RL I+ A
Sbjct: 253 KYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSCSMIIFTRTVVDAQRLSIMLRRLGFPA 312
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
LHG ++Q+ RL +L F+ L+ATDVA+RGLDI V V+NY P + YVHR
Sbjct: 313 IPLHGQMSQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVVNYDMPINSKDYVHR 372
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
VGRTARAGR G ++T VT D +L+ I G K+++ V ++++ +S+ + + +
Sbjct: 373 VGRTARAGRSGKSITMVTQYDVEILQRIEAHIGKKMENFAVDKEAVAAFSETVARANREA 432
Query: 518 AAILQEE 524
A ++E
Sbjct: 433 ALEMRES 439
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 218/371 (58%), Gaps = 8/371 (2%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A +F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP
Sbjct: 23 AKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 82
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 83 LNALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 139
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R
Sbjct: 140 AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 199
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLL 362
+T LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L
Sbjct: 200 KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILN 259
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L +F +IF T R +L A LHG + Q++RL +L F+ +
Sbjct: 260 ELAGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLNKFKAKARS 315
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF 375
Query: 483 KAIAKRAGSKL 493
+ I G KL
Sbjct: 376 QRIEHLIGKKL 386
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 249/445 (55%), Gaps = 17/445 (3%)
Query: 108 GDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
GD+++ AP +F EL + L ACE LG+ PTPIQ IP+ L RD+ G
Sbjct: 37 GDSQNNEAP--------KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIG 88
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TGSGKTAAFALP ++ L P A+ +L PTRELA Q+ E I +R
Sbjct: 89 LAQTGSGKTAAFALPVIQELWNNPSPFFAV---VLAPTRELAYQISEQFEAIGGSIGVRS 145
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
++VGG+ Q AL P ++V TPGR++DHL N+ L +L LI+DEADRLL++
Sbjct: 146 VVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMD 205
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F I +++++ P R+T+LFSAT+T V++L + SL +P+R++ + + ST+ +
Sbjct: 206 FGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAV---SSKFSTVDTLIQ 262
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R +++ L+ L ++ + +IIF+ T RL IL A LHG L+Q+
Sbjct: 263 RYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQS 322
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
RL AL F+ L+ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR
Sbjct: 323 NRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRA 382
Query: 468 GYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQ-EERE 526
G ++ VT D I G K++ + ++ + S+ + E Q AI+Q +E
Sbjct: 383 GKSIALVTQYDLEPFLRIEATIGKKMQEYEIDKEGVFLLSERVG--EAQREAIIQMKEIH 440
Query: 527 ERILRKAEMEATKAENMIAHKEEIF 551
+R K ++ + + + +E+I+
Sbjct: 441 DRRKSKGKLHTKRKRDDLDREEQIY 465
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 230/374 (61%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS LL+A GY KP+PIQ IP L GRD+ SA TG+GKTA F LP L+
Sbjct: 2 TFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQ 61
Query: 186 RL-LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L R IR LILTPTRELA QVH + + ++FTD+R ++ GG++ K Q AL
Sbjct: 62 ILSQTETSRQRPIRALILTPTRELAAQVHENVRQYSEFTDLRSLVIFGGVNQKPQVAALN 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L+N ++ L + +L+LDEADR+L++GF +I ++ L P +RQ
Sbjct: 122 RGVDVLVATPGRLLD-LQNQGAICLRKIEILVLDEADRMLDMGFLRDIERIMALMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L L KP+ + A P +T++V R+ + ++ +++ L
Sbjct: 181 NLLFSATFSKDIKRLASGILNKPVLVEATPENSTVDAITQKVYRVAKGKKT---GLIIKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ ++V++F+ TK A++L + + AA +HGN +Q R +AL F+ + L
Sbjct: 238 ISEGNWNQVLVFARTKHGANKLCKSMISSGITAAAIHGNKSQGARTKALAGFKSGQISVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN+ P YVHR+GRT RAG G A++ V+ ++ + L+
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEAISLVSADETTFLRD 357
Query: 485 IAKRAGSKLKSRIV 498
I K G K+ I+
Sbjct: 358 IEKLVGEKIPVTIL 371
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 226/374 (60%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 186 RLLYRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L+ P++ +R L+LTPTRELA Q++ + + +++ DI+ ++ GG++ Q +R
Sbjct: 62 NLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L N + L D+ L+LDEADR+L++GF +I +++RL P +RQ
Sbjct: 122 QGVDILVATPGRLLD-LENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT +D+ +L LT P+ + A P + ++ R+ + R+ +L+
Sbjct: 181 NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTE---MLIKF 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +V++F+ TK A+RL A + +A +HGN TQ R++AL F+ + L
Sbjct: 238 INEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VINY P YVHR+GRT RAG G A++ V ++ + ++
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRG 357
Query: 485 IAKRAGSKLKSRIV 498
I K G KL S ++
Sbjct: 358 IEKLLGEKLHSEVL 371
>gi|398382811|ref|ZP_10540892.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397726211|gb|EJK86652.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 460
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 14/377 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS P+L+A A Y+ PTPIQ IP+ L GRD+CG A TG+GKTAAFALP+L+
Sbjct: 3 FNELGLSEPILKALSAKNYATPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL
Sbjct: 63 FARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFMRLSVETVFGGVPIGKQIRALS 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ DIVVATPGR++D L + + + D + +LDEAD+++++GF + + ++ P+ RQ
Sbjct: 123 AGVDIVVATPGRLLD-LIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKMLPRDRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLL 362
+ FSAT+ ++++ L L P+++S P + T E VR ++M VNQ + LL
Sbjct: 182 NLFFSATMPKEIEALAAQFLNDPVKVSVAPQ-----STTAERVR-QQMTFVNQAEKQALL 235
Query: 363 SLCSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ KT + +IF+ TK A R+ A + A +HGN +Q QR AL+ FR+ V
Sbjct: 236 HIVLKTEEIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKV 295
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG +G A++FV D++R
Sbjct: 296 KLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPY 355
Query: 482 LKAIAKRAGSKLKSRIV 498
LKAI + +K+K IV
Sbjct: 356 LKAIER--ATKVKPEIV 370
>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
Length = 486
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 216/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL +S+PL AC LG++KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+
Sbjct: 45 TFAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL
Sbjct: 105 SLLDHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALAR 161
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ PK R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 221
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + SL P R+S K L + + I +E L+ L
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKY---KETYLVYLL 278
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+
Sbjct: 279 NEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKI 398
Query: 486 AKRAGSKL 493
G KL
Sbjct: 399 EANLGKKL 406
>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
Length = 449
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 220/373 (58%), Gaps = 6/373 (1%)
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
S A +F L L PLL A + + + PT IQA +P AL GRDI G A TGSGKTAAFA
Sbjct: 10 SAAAPTFKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFA 69
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LP L++L PK + A +L PTRELA Q+ E + +RC ++VGG Q+
Sbjct: 70 LPILQKLWDDPKGLFAC---VLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQK 126
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
AL P IVVATPGR+ DHL + +L + L+LDEADRLL++ F I +++++ P
Sbjct: 127 VALAKRPHIVVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIP 186
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K R T LFSAT+T V +L + SL+ P+R+ + + +L + + + ++E ++ +
Sbjct: 187 KERTTYLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYL-LMPLKE--KDTL 243
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L+ L + + +IIF+ T A RL I+ A LHG L+Q+QRL AL F+
Sbjct: 244 LVYLANTLAQNSIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGG 303
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D
Sbjct: 304 RKVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVE 363
Query: 481 LLKAIAKRAGSKL 493
+ I K G K+
Sbjct: 364 FIMRIEKVIGKKM 376
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 227/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF E+ L LL+A A GY+KPTPIQ +PL + GRDI G+A TG+GKTAAF LP L
Sbjct: 17 SFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLLH 76
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL+ P R P +R LIL PTRELA QV +++ + + +R +V GG+ Q
Sbjct: 77 RLMPMANSSMSPARHP-VRALILAPTRELADQVAESVKRYSHSSPLRVAVVFGGVDMNAQ 135
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR ++++ATPGR++DH+ +V L ++VL+LDEADR+L++GF ++ +VRL
Sbjct: 136 RDQLRKGCELLIATPGRLLDHIEQK-NVSLSQVSVLVLDEADRMLDMGFLPDLERIVRLL 194
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQ++LFSAT + D+ +L + L P+ ++ P T+T+ + + + A
Sbjct: 195 PKPRQSLLFSATFSNDIRKLARSFLNNPVEINVAPRNATAETVTQIAYPVAPNEK--KAA 252
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
VL +L S+ S+VI+F TK A R+ + A +HG+ +QA+R++ALE F+
Sbjct: 253 VLYTLKSRNL-SQVIVFVNTKIGASRVARELVSEGINAESIHGDRSQAERIKALEGFKSG 311
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ L+ATDVAARGLD++G+ VIN P + YVHR+GRT RAG +G A+ F T +
Sbjct: 312 EIAVLVATDVAARGLDVVGLPCVINMDLPYNAEDYVHRIGRTGRAGAKGEAIAFYTQTEE 371
Query: 480 SLLKAIAK 487
LL+ I K
Sbjct: 372 RLLEDIEK 379
>gi|444318027|ref|XP_004179671.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
gi|387512712|emb|CCH60152.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
Length = 506
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/408 (40%), Positives = 228/408 (55%), Gaps = 7/408 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF EL L L+ AC+ L Y KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L
Sbjct: 86 SSFSELKLVPELVEACKNLNYEKPTPIQSRAIPPALEGKDIIGLAQTGSGKTAAFAIPIL 145
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L + A I+ PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 146 NKLWEDQQPYYAC---IMAPTRELAQQIKEQFDSLGALMGVRSVCIVGGMNMMDQARDLM 202
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-R 303
P I++ATPGR++DHL N+ L L L++DEADRLL+L F + ++++ P + R
Sbjct: 203 RKPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDLEFGPVLDRILKILPTQGR 262
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
T LFSAT+T +D+L + SLT P++ + + TL + ++ + + L+
Sbjct: 263 TTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLIQTLMVVPGGL---KNTYLIY 319
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ +IIF+ TK A RL +L A LHG+L Q QR AL+LF+
Sbjct: 320 LINEFVGKSIIIFTRTKANAERLSLLSNTLEFDAIALHGDLNQNQRTGALDLFKAGKKSI 379
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 380 LIATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 439
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
I G KL V I +E+ +V L +E+ LR
Sbjct: 440 RIEDVLGKKLPKENVDRDIILSLRDSVEKTNGEVIMELNRRNKEKQLR 487
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 230/374 (61%), Gaps = 11/374 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS L+RA GY+KPTPIQ IP+ L G D+ G A TG+GKTA+F LP L R
Sbjct: 3 FEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRR 62
Query: 187 L-LY-----RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
L +Y P + P IR LIL PTRELAVQVH ++ ++ +R ++ GG++ Q
Sbjct: 63 LEIYANTSMSPAKHP-IRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQI 121
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
A+RS +I+VATPGR++DHL+ ++ L + + ILDEADR+L++GF +I ++++L P
Sbjct: 122 NAVRSGIEILVATPGRLLDHLQQK-TLGLSKIEIFILDEADRMLDMGFMPDIKQIIQLLP 180
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
++RQ ++FSAT +E++ +L L P+ + +T V + R ++ +
Sbjct: 181 EKRQNLMFSATFSEEIKKLASKILKNPVLIEVAKQNSVSELITHVVHPVDTTR---KQEL 237
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L+SL + +V++F+ TKQ A L + + +A +HG+ Q QR +AL F++
Sbjct: 238 LISLIKRQKLHQVLVFTRTKQGADHLTKWLNHSGISSAAIHGDRNQLQRTQALTNFKQSL 297
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG +G+A++ V+ ++
Sbjct: 298 IPVLVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGTKGFAISLVSQEEKK 357
Query: 481 LLKAIAKRAGSKLK 494
LL I + G K++
Sbjct: 358 LLIDIERVLGIKVR 371
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 218/368 (59%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ L + + + C L +SKPTPIQ IP+A+ G+D+ G A TGSGKTAAFA+P L+
Sbjct: 25 AWQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P + L++TPTRELA Q+ + + + C +VGG+ Q+ AL
Sbjct: 85 TLLKTPGG-GRLSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAK 143
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL + +L L LI+DEADR+L L F AE+ +++R P+ RQT
Sbjct: 144 KPHVIVATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQT 203
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T V +L + +L P+++S + K T+ + + + + E ++E L+SL
Sbjct: 204 MLFSATMTAKVKKLQRAALKNPVKISINSKYK---TVDKNIQKYMFIPEAHKECYLVSLL 260
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ S +IF+ T + L + LHG ++Q +RL AL F+ + L+
Sbjct: 261 NELQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILV 320
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVA+RGLD+ V VINY P + Y+HRVGRTARAGR G +VTFV+ D L + I
Sbjct: 321 CTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKI 380
Query: 486 AKRAGSKL 493
G KL
Sbjct: 381 EAHIGKKL 388
>gi|402218296|gb|EJT98373.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 217/370 (58%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PL+ AC+ L + +PTPIQAA IP AL G+DI G A TGSGKTAAFALP L+
Sbjct: 40 TFSSLGLIEPLVDACKQLNFKRPTPIQAAAIPPALEGKDIIGLAETGSGKTAAFALPILQ 99
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L + PK ++L PTRELA Q+ E + +RC +++GG+ Q AL
Sbjct: 100 KLWHDPK---PFFCVVLAPTRELAYQISQQFEALGSTIGVRCAVLIGGVKMVPQAVALSK 156
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR+ DHL N+ L L L++DEADRLL+L F I L++ P++R T
Sbjct: 157 RPHIVVATPGRLQDHLENTKGFSLRGLKYLVMDEADRLLDLDFGPIIDTLLKAIPRQRNT 216
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T V +L + SL P+++ + STL + V + Q LL+
Sbjct: 217 MLFSATMTTKVAKLQRTSLRNPVKVEVSSKYQTVSTLLQTYVLTPAAVKEPQLVHLLTTV 276
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S T I+F T A +L + A LHG+++Q +RL A+ F+ + L+
Sbjct: 277 SGLST---IVFVRTIHDATKLTLALRNLGFPAIPLHGDISQDKRLGAISRFKAEPGAILV 333
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLD+ V VINY P + Y+HRVGRTARAGR G A++ VT D LL+ I
Sbjct: 334 ATDVASRGLDMPKVDAVINYDLPTNSKDYIHRVGRTARAGRAGKAISIVTQYDVELLQRI 393
Query: 486 AKRAGSKLKS 495
G KL++
Sbjct: 394 EHVIGKKLEA 403
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 20 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 80 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 137 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 197 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 256
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 257 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 313 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 372
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 373 IEHLIGKKL 381
>gi|119596071|gb|EAW75665.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_a [Homo
sapiens]
Length = 440
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/297 (47%), Positives = 195/297 (65%), Gaps = 19/297 (6%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAG---------------DTKSFFAPADGASFHAN 125
+ND SE + E DY DE+ + A + FF D + + N
Sbjct: 129 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 186
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S L + VLILDEADR+L+ F ++ E++R+C RQ
Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
TMLFSAT+T++V +L +SL P+R+ + + L +E +RIR RE ++EA++
Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 423
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 221/361 (61%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L+ PLL+A E GY+ P+PIQ IP+ L G+DI +A TG+GKTA F+LP L
Sbjct: 2 SFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLH 61
Query: 186 RLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RLL RP +R LILTPTRELA QV ++ ++F ++ +V GG+ Q ALR
Sbjct: 62 RLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S D+++ATPGR++D L +V L L+LDEADR+L++GF +I +++L P +RQ
Sbjct: 122 SGVDVLIATPGRLLD-LYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LFSAT + ++ L + P ++S P+ T+ + +V I + ++ A L+SL
Sbjct: 181 TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKT---AALISL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++FS TK A+R+ A + +A +HGN +Q R +AL F+ +D L
Sbjct: 238 IKQNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + VIN P YVHR+GRT RAG G A +FV+ ++ LK
Sbjct: 298 VATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKD 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 24 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 84 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 141 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 201 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 260
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F IIF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 261 AGNSF----IIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 316
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 317 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 376
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 377 IEHLIGKKL 385
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 224/388 (57%), Gaps = 9/388 (2%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
A+G S A SF EL + + A EA+G+S P+ IQ IP L G+DI G A TGSGKT
Sbjct: 21 AEGFSGSA-SFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKT 79
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AF +P L+ LL+ P+R+ A L+L PTRELA Q+ E + ++C VVGG+
Sbjct: 80 GAFVIPILQSLLHNPQRLYA---LVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDM 136
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q+ AL P +V+ATPGR++DHL N+ L + L+LDEADR+L + F EI+++V
Sbjct: 137 MQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIV 196
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREV 355
+L P R T LFSAT+T V +L + SL P+++ P TL + + I + ++
Sbjct: 197 QLMPADRNTYLFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDC 256
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
VL + ++ V+IF+ T ++ ++ +A LHG + Q RL AL
Sbjct: 257 YLAYVLNEVAGQS----VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNK 312
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+ + + L+ TDVA+RGLDI V VINY P Y+HRVGRTARAGR G A++FVT
Sbjct: 313 FKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVT 372
Query: 476 DNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
D L + I G+KL + E+++
Sbjct: 373 QYDVELYQRIEHLLGTKLDAYSCEEETV 400
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
Length = 453
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 235/373 (63%), Gaps = 14/373 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +++P A ++ GYS+PTPIQ IP L G+D+ G A TG+GKTAAFA+P L+R
Sbjct: 4 FDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQR 63
Query: 187 LL---YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
LL YR PK ++R LILTPTRELA Q+ I+ A T + VVGG+ Q
Sbjct: 64 LLESRYRAAPK---SVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFH 120
Query: 242 ALRSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
AL+ D++VATPGR++D H +N +S D+L + +LDEAD++L+LGF AE+ E+ L P
Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVS--FDELEIFVLDEADQMLDLGFIAELEEIAYLLP 178
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQT+ FSAT+ ++ +L + LT P+ +S P A T+T+++ + + + +
Sbjct: 179 KKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKF---PL 235
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L L K + ++F+ TK+ + RL + A +HG+++QA+R + L+ F++
Sbjct: 236 LKELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGK 295
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATDVAARG+D+ + VIN+ P +YVHR+GRTARAG+ G A+TF DR
Sbjct: 296 LKTLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRG 355
Query: 481 LLKAIAKRAGSKL 493
+L+AI K G K+
Sbjct: 356 MLRAIQKLIGKKI 368
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 171/436 (39%), Positives = 242/436 (55%), Gaps = 9/436 (2%)
Query: 98 PEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACI 156
P DED SN+ D+ S P + + SF EL+L L+ AC+ L Y+KPTPIQ+ I
Sbjct: 40 PSDEDSAQSNSKDSNSNEQPEE-SEEIFESFTELDLVPELIEACKNLNYNKPTPIQSKAI 98
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
P AL G DI G A TGSGKTAAFA+P L +L + + A IL PTRELA Q+
Sbjct: 99 PPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYAC---ILAPTRELAQQIKETF 155
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
+ + +R +VGG+S Q L P I++ATPGR++DHL N+ +L L L+
Sbjct: 156 DSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLV 215
Query: 277 LDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPS 335
+DEADRLL++ F + ++ + P + R T LFSAT+T +D+L + SLT P++ +
Sbjct: 216 MDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK 275
Query: 336 AKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395
+ TL + ++ + + L+ L ++ I+F+ TK A R+ L L
Sbjct: 276 YQTVDTLVQTLMVVPGGL---KNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEF 332
Query: 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYV 455
A LHG+L Q QR AL+LF+ L+ATDVAARGLDI V VINY P D SY+
Sbjct: 333 SATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYI 392
Query: 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 515
HRVGRTARAGR G +++ V+ D L+ I G KL V + +I +++
Sbjct: 393 HRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANG 452
Query: 516 QVAAILQEEREERILR 531
+V L +E+ R
Sbjct: 453 EVVMELNRRNKEKQAR 468
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 225/367 (61%), Gaps = 11/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +L+A + LGY PTPIQ IPL L G+D+ G+A TG+GKTA ++LP L+
Sbjct: 17 FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQS 76
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL+ P R P +R LIL PTRELA QV +++ A++T ++ +V GG+ Q
Sbjct: 77 LLFSANTSMSPARHP-VRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQT 135
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
+ LR+ +I++ATPGR++DH++ +V+L +L+LDEADR+L++GF ++ +V L P
Sbjct: 136 SILRAGVEILIATPGRLLDHVQQK-NVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLP 194
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ +LFSAT + D+ +L + + P+ + A++ +T + R+ E + A
Sbjct: 195 KQRQNLLFSATFSNDIKKLARSFMKDPVTVEV---ARQNATAENVKQTVYRIEESEKNAA 251
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ L +V+IFS TK A RL +KA+ +HG+ TQA+R+ LE F+
Sbjct: 252 VEHLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGS 311
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATDVAARGL I + VIN+ P YVHR+GRT RAG +G A++ ++ D
Sbjct: 312 IDILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDER 371
Query: 481 LLKAIAK 487
LLK I K
Sbjct: 372 LLKEIEK 378
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 240/434 (55%), Gaps = 8/434 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A SF EL ++ L AC+ LG+ PT IQ IPLAL GRDI G A TGSGKT AFALP
Sbjct: 15 AKSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPI 74
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ LL P+R A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL
Sbjct: 75 LQALLETPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLAL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R
Sbjct: 132 AKKPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 191
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLL 362
+T LFSAT+T+ V +L + +L P++ + + L + V I + ++ +L
Sbjct: 192 KTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYILN 251
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L +F +IF T R +L A LHG + Q +RL +L F+ +
Sbjct: 252 ELAGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARS 307
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L
Sbjct: 308 VLLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELF 367
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
+ I G KL + E + ++ + + + LQ++ +++ R+ E AE
Sbjct: 368 QRIEHLIGKKLPAFPTQEDEVMMLTERVAEAQRFARMELQQKGDKKRSREEANEPDDAEG 427
Query: 543 MIAHKEEIFARPKR 556
+ + ++ K+
Sbjct: 428 AMGVRNKVAGGKKK 441
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 211/368 (57%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+
Sbjct: 122 SFQDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQ 181
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK A +L PTRELA Q+ +E + +R +VGG+ Q AL
Sbjct: 182 ALWDNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSK 238
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+T
Sbjct: 239 RPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 298
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T V +L + SL P+R+ D STL + + M +++ L+ L
Sbjct: 299 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLA 355
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T + RL IL L A LHG L+Q RL AL F+ L+
Sbjct: 356 NEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 415
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 416 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 475
Query: 486 AKRAGSKL 493
G K+
Sbjct: 476 EAVIGLKM 483
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYVFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 18 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 77
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 78 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 134
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 135 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKT 194
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 195 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 254
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 255 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 310
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 311 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 370
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 371 IEHLIGKKL 379
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEYLIGKKL 386
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|341877652|gb|EGT33587.1| hypothetical protein CAEBREN_24452 [Caenorhabditis brenneri]
Length = 491
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 232/404 (57%), Gaps = 9/404 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL +S+PL AC LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+
Sbjct: 45 TFAELGVSQPLCDACHRLGWVKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL
Sbjct: 105 SLLDHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALAR 161
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ P+ R+T
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRT 221
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + SL P R+S K L + + + +E L+ L
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFVPNKY---KETYLVYLL 278
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + I+F T ++ ++ ++A LHG ++Q +RL +L F+ + + L+
Sbjct: 279 NEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI V VINY P YVHRVGRTARAGR G A+T VT D + I
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKI 398
Query: 486 AKRAGSKL-KSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
G KL + + V + + + E ME+ A I +E +E+
Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEAMEN--AKIEMKEMDEK 440
>gi|406603210|emb|CCH45247.1| ATP-dependent rRNA helicase RRP3 [Wickerhamomyces ciferrii]
Length = 488
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 213/358 (59%), Gaps = 6/358 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
NSF +L L LL AC+AL + KPTPIQA IP + GRD+ G A TGSGKTAAFA+P L
Sbjct: 74 NSFKDLKLIPELLEACQALKFDKPTPIQAEAIPHGIEGRDLIGLAQTGSGKTAAFAIPIL 133
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ L Y + P +L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 134 QALWY--AQTPYFAT-VLAPTRELAYQIKDTFDALGSGMGLRSVCIVGGMDMMEQARDLM 190
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P ++VATPGR++DHL + L L L++DEADRLL++ F + ++ ++ P+ R
Sbjct: 191 RKPHVIVATPGRLMDHLEHLKGFSLRALKFLVMDEADRLLDMEFGPVLDKIFKVIPRERT 250
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P+++S + R ST+ + + + + + L+ L
Sbjct: 251 TYLFSATMTNKIDKLQRASLTNPVKVSV---SDRYSTVDTLIQSMMIVPDGQKNTYLIYL 307
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ T + R +L + A LHG LTQ+QRL AL F+ + L
Sbjct: 308 LNQFEGKSIIIFTRTCAHSQRTALLSRILGFSAVPLHGQLTQSQRLSALNRFKSGKTNIL 367
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
+ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +V+ VT D LL
Sbjct: 368 VATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELL 425
>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 559
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 220/364 (60%), Gaps = 6/364 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L+ P++RA + PTPIQA IP L GRD+ G A TG+GKTAAFALP L+
Sbjct: 38 SFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILD 97
Query: 186 RLLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
RL+ P R ++R L+L+PTREL+ Q+ EK + +I L +GG+ Q AL
Sbjct: 98 RLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRAL 157
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
D++VATPGR+ID + N +V LD + VL+LDEAD++L++GF I +VR P +R
Sbjct: 158 SRGVDVLVATPGRLIDLVENH-AVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKR 216
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
++ FSAT+ + EL L P+R++ P AK + + V+ + + N+ +L
Sbjct: 217 HSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDK---ANKGQLLAE 273
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ S + ++FS TK A ++ + A + A +HGN +Q QR L FR+ +
Sbjct: 274 VLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRT 333
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+AARG+D+ GV VIN+ P SYVHR+GRTARAGREG A++F +R+ L+
Sbjct: 334 LIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLR 393
Query: 484 AIAK 487
+I K
Sbjct: 394 SIEK 397
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ +PLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|345570196|gb|EGX53021.1| hypothetical protein AOL_s00007g357 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 156/359 (43%), Positives = 211/359 (58%), Gaps = 6/359 (1%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L E L + KPTPIQ A IPLAL G+D+ G A TGSGKTAAFALP L+ L + P
Sbjct: 113 LCETLEILKFHKPTPIQQASIPLALAGKDLIGLAETGSGKTAAFALPILQALYHSPHS-- 170
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
+ IL PTRELA Q+ E I ++ C++VGG+ Q AL P I+VATPG
Sbjct: 171 TLFACILAPTRELAFQISEQTEAIGGSLGVKTCVIVGGMDMMPQAIALSKRPHIIVATPG 230
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ L + L++DEADRLL+L F I +++++ P +R T LFSAT+T+
Sbjct: 231 RLLDHLENTKGFSLRSIKYLVMDEADRLLDLDFGPIIEKILKVLPPQRNTYLFSATMTDK 290
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSK-VI 374
V+ L ++SLT P+R++ + +L + + I + +++ L+ L ++ F K +I
Sbjct: 291 VERLQRMSLTNPVRVAVSSKYQTVKSLLQYFMLI---PQKDKDTYLVYLVAEKFAGKTMI 347
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T R+ +L L A LHG L+Q RL AL F+ + L+ATDVAARGL
Sbjct: 348 IFTRTIMDTQRISVLLRLLGCSAIPLHGQLSQTGRLGALNKFKAGARNILVATDVAARGL 407
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V VINY D +Y+HRVGRTARAGR G V VT D I K G KL
Sbjct: 408 DIPTVDYVINYDIAGDSKTYIHRVGRTARAGRSGVCVNLVTQYDIEEFTRIEKALGKKL 466
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 165/417 (39%), Positives = 233/417 (55%), Gaps = 11/417 (2%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
P +G S SF EL+L L+ AC+ L ++KPTPIQ+ IP AL G+DI G A TGSGK
Sbjct: 61 PEEGFS----SFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGK 116
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFA+P L RL + + A IL PTRELA Q+ + + +R +VGG++
Sbjct: 117 TAAFAIPILNRLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMN 173
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q L P I++ATPGR++DHL N+ L L L++DEADRLL++ F + +
Sbjct: 174 MMDQARDLMRKPHIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRI 233
Query: 296 VRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE 354
++ P K R T LFSAT+T +D+L + SLT P++ + + TL + ++ +
Sbjct: 234 LKNIPTKGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL- 292
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ L+ L ++ I+F+ TK A R+ L L A LHG+L Q QR AL+
Sbjct: 293 --KNTFLIYLLNEFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALD 350
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
LF+ L+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +V+ V
Sbjct: 351 LFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLV 410
Query: 475 TDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILR 531
+ D L+ I + G KL V + + +++ +V L +E+ R
Sbjct: 411 SQYDLELILRIEEVLGKKLPKENVDKSIVLSLRDSVDKANGEVIMELNRRNKEKQTR 467
>gi|375357970|ref|YP_005110742.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
Length = 427
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 221/368 (60%), Gaps = 5/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L+
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALRS
Sbjct: 62 KL-YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
I+VATPGR++D + + L L +LDEADR+L++GF +I +++L P RRQT
Sbjct: 121 GIQILVATPGRLLDLISQGF-ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKK---EKKDLLIHLL 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LI
Sbjct: 237 KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356
Query: 486 AKRAGSKL 493
K G K+
Sbjct: 357 QKLIGKKI 364
>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
gi|74699927|sp|Q4P3U9.1|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
Length = 551
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 210/367 (57%), Gaps = 6/367 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+
Sbjct: 106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQA 165
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L PK A +L PTRELA Q+ +E + +R +VGG+ Q AL
Sbjct: 166 LWDNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKR 222
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P ++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+TM
Sbjct: 223 PHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTM 282
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T V +L + SL P+R+ D STL + + M +++ L+ L +
Sbjct: 283 LFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYM---FMPFAHKDTYLVHLAN 339
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +I+F+ T + RL IL L A LHG L+Q RL AL F+ L+A
Sbjct: 340 EQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVA 399
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 400 TDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRIE 459
Query: 487 KRAGSKL 493
G K+
Sbjct: 460 AVIGLKM 466
>gi|374328740|ref|YP_005078924.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359341528|gb|AEV34902.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 453
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 235/373 (63%), Gaps = 14/373 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +++P A ++ GYS+PTPIQ IP L G+D+ G A TG+GKTAAFA+P L+R
Sbjct: 4 FDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQR 63
Query: 187 LL---YR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
LL YR PK ++R LILTPTRELA Q+ I+ A T + VVGG+ Q
Sbjct: 64 LLESRYRAAPK---SVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFR 120
Query: 242 ALRSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
AL+ D++VATPGR++D H +N +S D+L + +LDEAD++L+LGF AE+ E+ L P
Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVS--FDELEIFVLDEADQMLDLGFIAELEEIAYLLP 178
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQT+ FSAT+ ++ +L + LT P+ ++ P A T+T+++ + + + +
Sbjct: 179 KKRQTLFFSATMPREIRDLSERFLTNPVEVTTAPPATTVETVTQQIAHLEKDAKF---PL 235
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L L K + ++F+ TK+ + RL + A +HG+++QA+R + L+ F++
Sbjct: 236 LKELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGK 295
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATDVAARG+D+ + VIN+ P +YVHR+GRTARAG+ G A+TF DR
Sbjct: 296 LKTLVATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRG 355
Query: 481 LLKAIAKRAGSKL 493
+L+AI K G K+
Sbjct: 356 MLRAIQKLIGKKI 368
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/411 (39%), Positives = 235/411 (57%), Gaps = 5/411 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DGA+ +F +L L L AC+ LGY PT IQ IPLAL RD+ G A TGSGKTA
Sbjct: 45 DGAAKAPKTFKDLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTA 104
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ L+ +P+ L+L PTRELA Q+ E + +R ++VGG+
Sbjct: 105 AFALPILQALMDKPQPFFG---LVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMV 161
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q A+ P I+VATPGR++DHL N+ L L L++DEADRLL++ F I ++++
Sbjct: 162 PQAIAIGKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILK 221
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357
+ P+ R+T LFSAT++ V+ L + SL+ PLR+S S+ + T++ + + ++
Sbjct: 222 VLPRERRTFLFSATMSSKVEGLQRASLSNPLRVSV--SSNKYQTVSTLLQYYLFIPHKHK 279
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+ L+ L ++ VIIF+ T RL IL A LHG L+Q+ RL AL FR
Sbjct: 280 DVHLIWLLNEHVGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFR 339
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+ D LIATDVAARGLDI V V+NY D ++VHR+GRTARAG+ G A++ VT
Sbjct: 340 SRSRDILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQY 399
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
D + I K KL V ++ + S + + + Q L++ E +
Sbjct: 400 DVEVWLRIEKALDRKLPEYKVEKEEVLILSDRVAEAQRQAITELKDLDERK 450
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 8/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNL P++ A GY PTPIQ IP AL GRD+ G A TG+GKTAAF LP L+
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L RP+ R P I+ L+LTPTRELA+Q+ A++TD+R C++ GG++ + Q A
Sbjct: 62 LLSARPRTKGRRP-IKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ D++VATPGR++D L V L D+ +LDEADR+L++GF +I ++ L PK
Sbjct: 121 LQRGVDLLVATPGRLLD-LIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKE 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+ FSAT+ D+ L L P+ ++ P A T+++ V+ + ++ +L+
Sbjct: 180 RQTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEK---AEKKDLLI 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
SL + V++FS TK A R+ + A ++ +HG+ +Q R A+ FR
Sbjct: 237 SLLRERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATD+AARG+DI + VINY P +YVHR+GRT RAG +G A+ F ++++R LL
Sbjct: 297 VLIATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLL 356
Query: 483 KAIAKRAG 490
K I K G
Sbjct: 357 KDIQKLTG 364
>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
Length = 375
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 226/370 (61%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P ++
Sbjct: 2 TFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQ 61
Query: 186 RLLYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 62 QLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKEL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRR
Sbjct: 122 ERGVDILIATPGRLLDLISQHI-ITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ ++FS TK A R+ ++ +HGN +Q R AL F+
Sbjct: 238 VLKNDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T ++R +++
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVR 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|388578792|gb|EIM19128.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 438
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +LNL L++ CE LGY +PT IQ IP +L RDI G A TGSGKTAAFALP ++
Sbjct: 5 SFKDLNLIDDLVKNCERLGYKQPTEIQQQSIPYSLQSRDIIGLAQTGSGKTAAFALPVIQ 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P P +L PTRELA Q+ E + +R +VGG+ Q AL
Sbjct: 65 LLYDNPA--PYF-CCVLAPTRELAYQISEQFEALGSNIGLRTATIVGGMDMMTQSIALSK 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR+ DHL N+ L ++ L++DEADRLL++ F I +L+++ PK R T
Sbjct: 122 KPHIIVATPGRLHDHLENTKGFSLRNIKFLVMDEADRLLDMDFGPIIDKLLKILPKERTT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
MLFSAT+T V +L + SL+ P+++ + STL + + +M+ ++ L+ L
Sbjct: 182 MLFSATMTTKVAKLQRASLSNPVKVEVSDKYQTVSTLLQHYLFFPFKMK----DSYLVYL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +IIF+ T A R+ I+ A LHG L+Q+ RL AL F+ + L
Sbjct: 238 ANEVAGHSMIIFTRTVVDAQRISIILRNLGFPAIPLHGQLSQSSRLGALNKFKAGGRNIL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+NY P + Y+HRVGRTARAGR G A+T VT D LL+
Sbjct: 298 VATDVASRGLDIPSVDYVVNYDTPSNSKDYIHRVGRTARAGRSGKAITLVTQYDVELLQR 357
Query: 485 IAKRAGSKL 493
I K K+
Sbjct: 358 IEKAINVKM 366
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 220/379 (58%), Gaps = 8/379 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L ACE LG+ +PT IQ IP+AL GRDI G A TGSGKT AFALP L+
Sbjct: 20 TFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL
Sbjct: 80 TLLESPQRLYA---LVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 137 KPHIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 197 FLFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNEL 256
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R+ +L A LHG + Q +RL AL F+ + L
Sbjct: 257 AGNSF----MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L +
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 372
Query: 485 IAKRAGSKLKSRIVAEQSI 503
I G KL + E+ +
Sbjct: 373 IEHLIGKKLPAFPTQEEEV 391
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/411 (38%), Positives = 233/411 (56%), Gaps = 20/411 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+
Sbjct: 25 TFQQLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL
Sbjct: 85 ALLETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T
Sbjct: 142 RPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERRT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
L+SAT+T+ V +L + SL P+R+ + L + + I +EA L+ +
Sbjct: 202 YLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYK---YKEAYLVYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F T +A R ++ A LHG ++QA+RL +L F+ + LI
Sbjct: 259 NEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLI 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVA+RGLDI V V+NY P YVHRVGRTARAGR G AVTFVT D + + I
Sbjct: 319 CTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQRI 378
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ G KL + E +E+ V +++ E + L K EM+
Sbjct: 379 ERLIGKKL--------------PLFETVENDVMLLMERVEEAQKLAKREMK 415
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL R KR PA +R L+LTPTRELA QV +E + +R ++ GG+ Q + L
Sbjct: 62 -LLSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N +V L VL+LDEADR+L++GF +I +++++ P +R
Sbjct: 121 GKGVDILVATPGRLLD-LYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ L K + P+ +S P T+ + + + + ++ A L+
Sbjct: 180 QNLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKT---AALIH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+R+ + L AA +HGN +Q R +AL F+ V
Sbjct: 237 LVKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+
Sbjct: 297 LVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLR 356
Query: 484 AI 485
I
Sbjct: 357 DI 358
>gi|404401914|ref|ZP_10993498.1| DEAD/DEAH box helicase [Pseudomonas fuscovaginae UPB0736]
Length = 448
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 226/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL D+ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKDVEVLVLDEADRMLDMGFAEDVQRLVEECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQMNETTRQQIITAD--HDQHKEQIINWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGAVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + + R++ E
Sbjct: 359 ERYLKQRFERRVIKE 373
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 8/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNL P++ A GY PTPIQ IP AL GRD+ G A TG+GKTAAF LP L+
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L RP+ R P I+ L+LTPTRELA+Q+ A++TD+R C++ GG++ + Q A
Sbjct: 62 LLSARPRTKGRRP-IKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ D++VATPGR++D L V L D+ +LDEADR+L++GF +I ++ L PK
Sbjct: 121 LQRGIDLLVATPGRLLD-LIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKE 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+ FSAT+ D+ L L P+ ++ P A T+++ V+ + ++ +L+
Sbjct: 180 RQTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEK---AEKKDLLI 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
SL + V++FS TK A R+ + A ++ +HG+ +Q R A+ FR
Sbjct: 237 SLLRERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATD+AARG+DI + VINY P +YVHR+GRT RAG +G A+ F ++++R LL
Sbjct: 297 VLIATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLL 356
Query: 483 KAIAKRAG 490
K I K G
Sbjct: 357 KDIQKLTG 364
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ ++ L L AC AL + P+ IQ IPLAL G+D+ G A TGSGKT AFALP L+
Sbjct: 58 SWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQ 117
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A+ ILTPTRELA Q+ E + I+CC++VGG+ Q L
Sbjct: 118 ALLENPQRYFAV---ILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLAR 174
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L + L++DEADR+L L F E+ +++++ P+ R+T
Sbjct: 175 KPHIIIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRT 234
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 235 FLFSATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAKYKDVYLVHILNEL 294
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R ++ L A LHG ++Q +RL AL F+ ++ L
Sbjct: 295 AGNSF----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQIL 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G AVTFVT D L +
Sbjct: 351 ISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQR 410
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 411 IEHLLGKKL 419
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 208/360 (57%), Gaps = 6/360 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+
Sbjct: 116 TFADLGVIPQIIEACTNMGFQHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQ 175
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK A +L PTRELA Q+ +E + +R +VGG+ Q AL
Sbjct: 176 ALWDNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSK 232
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+T
Sbjct: 233 RPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 292
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T V +L + SL P+R+ D STL + + M +++ L+ L
Sbjct: 293 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLA 349
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T + RL IL L A LHG L+Q RL AL F+ L+
Sbjct: 350 NEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 409
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 410 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 469
>gi|402307634|ref|ZP_10826656.1| DEAD/DEAH box helicase [Prevotella sp. MSX73]
gi|400378346|gb|EJP31204.1| DEAD/DEAH box helicase [Prevotella sp. MSX73]
Length = 375
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 226/370 (61%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P ++
Sbjct: 2 TFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQ 61
Query: 186 RLLYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 62 QLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKEL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRR
Sbjct: 122 ERGVDILIATPGRLLDLISQHI-ITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ ++FS TK A R+ ++ +HGN +Q R AL F+
Sbjct: 238 VLKNAGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T ++R +++
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVR 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 213/359 (59%), Gaps = 8/359 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 166 LCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 225
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL P IV+ATPG
Sbjct: 226 A---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPHIVIATPG 282
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+
Sbjct: 283 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 342
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 343 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 398
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 399 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 458
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 459 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 517
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL ++ L CE LG+ +PT IQ IP+AL GRDI G A TGSGKT AFALP L+
Sbjct: 20 TFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q AL
Sbjct: 80 TLLESPQRLYA---LVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + V I + ++ +L L
Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNEL 256
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R+ +L A LHG ++Q +RL +L F+ + L
Sbjct: 257 AGNSF----MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L +
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 372
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 373 IEHLIGKKL 381
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|336172862|ref|YP_004580000.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334727434|gb|AEH01572.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 444
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 230/374 (61%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L LS PLL+A GY P+PIQA IP L G D+ SA TG+GKTA F LP L
Sbjct: 2 SFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L PK + IR L+LTPTRELA QV++ +++ ++F ++R ++ GG++ K Q +R
Sbjct: 62 ILSENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR+ID L N + L + + +LDEADR+L++GF +I +++L P +RQ
Sbjct: 122 KGVDVLVATPGRLID-LNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ +L L P+++ A P ++++V R+ + + +++ L
Sbjct: 181 NLMFSATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKT---GLVIKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S +V++F+ TK A++L + + AA +HGN +Q R +AL+ F+ + +
Sbjct: 238 ISDGNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVM 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN+ P YVHR+GRT RAG +G A++ V+ ++ L+
Sbjct: 298 VATDIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRD 357
Query: 485 IAKRAGSKLKSRIV 498
I K G KLK I+
Sbjct: 358 IEKLIGEKLKVEIL 371
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 215/370 (58%), Gaps = 6/370 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ +F EL L L AC L Y +PTPIQA IP AL RDI G A TGSGKTAAFALP
Sbjct: 71 SKTFEELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPV 130
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ L PK +L PTRELA Q+ + + ++ ++VGG+ Q AL
Sbjct: 131 LQSLWNDPK---PFFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIAL 187
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P I+VATPGR+ DHL N+ L +L LI+DEADRLL++ F I +++++ P+ R
Sbjct: 188 SKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIPRER 247
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
+T LFSAT+T V +L + SL P+++ + + T+ V N++A L+
Sbjct: 248 RTYLFSATMTTKVAKLQRASLVSPVKVQM---STKYDTVDGLVQLYMFFPFKNKDAYLVY 304
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ +IIF+ T A+RL I+ L + LHG L+Q+ RL +L F+ +
Sbjct: 305 LVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 364
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVA+RGLDI V VIN+ P + Y+HRVGRTARAGR G AVT VT D LL+
Sbjct: 365 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQ 424
Query: 484 AIAKRAGSKL 493
I G K+
Sbjct: 425 RIEGVIGKKM 434
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TG GKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 220/379 (58%), Gaps = 8/379 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L + L +ACE L + PT IQ IPL + G+D+ G A TGSGKTAAFALP L+
Sbjct: 25 TWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 85 ALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 142 KPHIIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + V I + ++V +L L
Sbjct: 202 LLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ L
Sbjct: 262 SGNSF----MIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G +VTFVT D L +
Sbjct: 318 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQR 377
Query: 485 IAKRAGSKLKSRIVAEQSI 503
I + G +L EQ +
Sbjct: 378 IEQLIGKQLPIYKTEEQEV 396
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/438 (37%), Positives = 241/438 (55%), Gaps = 11/438 (2%)
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACI 156
+PE+ +D N ++ D ++ F EL L +L A E L +S PTPIQA +
Sbjct: 44 QPEEPEDKQNEQQSEQ-----DESTKQVTLFKELGLQPDILDAIEKLNFSTPTPIQAQSL 98
Query: 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216
P +L GRDI G A TGSGKTAAFA+P L+ L + P +L PTRELA Q+
Sbjct: 99 PHSLQGRDIIGIAQTGSGKTAAFAIPILQALW--EAQTPYF-ACVLAPTRELAYQIRETF 155
Query: 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276
+ + +RC +VGG+ Q L P ++VATPGR++DHL N+ L L L+
Sbjct: 156 DALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVATPGRLMDHLENTKGFSLKALKYLV 215
Query: 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA 336
+DEADRLL++ F + ++ + P+ R+T LFSATLT V++L + SL P++++ +
Sbjct: 216 MDEADRLLDMEFGPVLDRILNIIPRERKTYLFSATLTSKVEKLQRASLIDPVKIAVNDKY 275
Query: 337 KRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK 396
TL + ++ + + + L+ L ++ VI+F+ T A ++ +L +
Sbjct: 276 STVDTLIQTLMVVP---DGYKNTYLIYLLNEYVGKSVIVFARTCAHAQKVALLARILGFS 332
Query: 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVH 456
A LHG LTQAQRL AL F+ L+ATDVAARGLDI V V+NY P D +Y+H
Sbjct: 333 AIPLHGQLTQAQRLGALNKFKSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKAYIH 392
Query: 457 RVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQ 516
RVGRTARAGR G +V+ VT D L+ I K KL + + I +++ Q
Sbjct: 393 RVGRTARAGRSGKSVSLVTQYDLELILRIEKVIDMKLPKEVPNKNEILALHDSVDRATAQ 452
Query: 517 VAAILQEEREERILRKAE 534
+ ++E +R RK +
Sbjct: 453 AVSKVKEFHSKRKFRKKD 470
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 219/368 (59%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNL LL + E + ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 69 TFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 128
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + + P L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 129 SLWHAQQ--PYFG-LVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMR 185
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T
Sbjct: 186 KPHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 245
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+R++ + L + ++ + + + +L+ L
Sbjct: 246 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVN---DGYKNTILIHLL 302
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + LI
Sbjct: 303 NEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILI 362
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 363 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 422
Query: 486 AKRAGSKL 493
G KL
Sbjct: 423 ESVLGYKL 430
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 222/366 (60%), Gaps = 7/366 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF L +S LLR G+++PT IQA IP AL GRD+ G A TG+GKTAAF +P L
Sbjct: 7 TSFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPML 66
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL PK P R LIL PTRELA+Q+ + I+ + + + VVGG + Q LR
Sbjct: 67 ERLSGTPKGQP--RALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLR 124
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
PDI+VATPGR++DH+ N ++ L +++L+LDEADR+L++GF+ +I++++ P+ RQ
Sbjct: 125 QRPDIIVATPGRLLDHMWNG-TISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQ 183
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LFSAT+ D+ L + S+ P+R+ SA +T+ V R+ +L+SL
Sbjct: 184 TLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDRK---NGLLMSL 240
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ + V++F+ TK A RL L A + A LHG T QR ALE FR+ L
Sbjct: 241 L-QSESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ + VINY P YVHR+GRTAR G A TFVT D+ L+A
Sbjct: 300 VATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRA 359
Query: 485 IAKRAG 490
I + G
Sbjct: 360 IERLLG 365
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 216/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ
Sbjct: 122 RGVDVLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 215/367 (58%), Gaps = 6/367 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S+ L ACE + + PT IQ IP A+ GRDI G A TGSGKTAAFA+P ++R
Sbjct: 25 FSDLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGRDIIGLAQTGSGKTAAFAIPIIQR 84
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P+ A +L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 85 LWQNPQ---AFFACVLAPTRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQSIALAKR 141
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+V TPGR+ DHL N+ +L L L++DEADRLL+L F +I +++++ P+ R T
Sbjct: 142 PHIIVCTPGRLQDHLENTKGFNLKHLKYLVMDEADRLLDLDFGPKIDQILKVIPRERNTF 201
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+T V +L + SL KP+++ A + ST+ + +++ ++ L +
Sbjct: 202 LFSATMTTKVAKLQRASLHKPVKVEV---ATKYSTVKTLLQYYLFFPLKHKDCYMVYLLN 258
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ + IIF+ T ++ I+ A LHG L QA+RL AL F+ + L+A
Sbjct: 259 ELAGNSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNKFKAGARNILVA 318
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVA+RGLDI V VINY P+ Y+HRVGRTARAGR G +VTFVT D L++ I
Sbjct: 319 TDVASRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIE 378
Query: 487 KRAGSKL 493
K KL
Sbjct: 379 KDLERKL 385
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 217/374 (58%), Gaps = 12/374 (3%)
Query: 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFAL 181
FH +F+ELNL L+ A E L Y+KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+
Sbjct: 63 FH--TFLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAI 120
Query: 182 PTLERLL--YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
P L+ L RP L+L PTRELA Q+ + + +R +VGG+ Q
Sbjct: 121 PILQSLWEAQRP-----YYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQ 175
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
L P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++
Sbjct: 176 ARDLMRKPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVI 235
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +R T LFSAT+T + +L + SL +P++++ + L + ++ + + +
Sbjct: 236 PTKRTTYLFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLV---SDGYKNT 292
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+ L ++ +I+F+ T R +L + A LHG LTQ+QRL +L F+
Sbjct: 293 FLIHLLNEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSG 352
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ LIATDVAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D
Sbjct: 353 KANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDL 412
Query: 480 SLLKAIAKRAGSKL 493
+ I G KL
Sbjct: 413 EMYLRIESVLGFKL 426
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 219/365 (60%), Gaps = 6/365 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS P+L+A A GY PTPIQA IP LTGRD+ G A TG+GKTAAFALP L R
Sbjct: 4 FTDLGLSAPILKAVTAEGYETPTPIQAQAIPPVLTGRDLMGIAQTGTGKTAAFALPILNR 63
Query: 187 LLYRPKRI----PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L I + RVLIL+PTRELA Q+ +F ++ V GG+S Q A
Sbjct: 64 LTEEGNHIKTPRGSCRVLILSPTRELASQIAESFRVYGKFLNLSVATVFGGVSAGPQAKA 123
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DIVVATPGR+IDHL+N + V LD + + +LDEAD++L++GF I +V+ P +
Sbjct: 124 LQRGVDIVVATPGRLIDHLQNRV-VRLDQVEIFVLDEADQMLDMGFIQPIRRIVKTLPAK 182
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ + FSAT+ +++ L L P +++ P A ++++V+ + + A LL
Sbjct: 183 RQNLFFSATMPREIETLAGELLHDPAKVAVTPVASTAERVSQQVIFVPTGLKRALLADLL 242
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S F + ++F+ TK A ++ A + +A +HGN +Q+QR AL FR
Sbjct: 243 SDAQMGF-GRTLVFTRTKHGADKVVRYLEGAGIVSAAIHGNKSQSQRERALLAFRDGACK 301
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATD+AARG+D+ GV VINY P SYVHR+GRTARAG +G A++F +R+ L
Sbjct: 302 VLIATDIAARGIDVDGVTHVINYDLPNIAESYVHRIGRTARAGADGMAISFCDREERAYL 361
Query: 483 KAIAK 487
+ I K
Sbjct: 362 RDIEK 366
>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
Length = 531
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 210/350 (60%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + + + A+L L
Sbjct: 181 NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKK---KSAMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|403214400|emb|CCK68901.1| hypothetical protein KNAG_0B04660 [Kazachstania naganishii CBS
8797]
Length = 494
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 216/365 (59%), Gaps = 7/365 (1%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
LNL LL AC+ L YSKPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L L +
Sbjct: 79 LNLVPELLEACKNLNYSKPTPIQSRSIPPALKGKDIIGLAQTGSGKTAAFAIPILNSLWH 138
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
+ A IL+PTRELA Q+ + + +R +VGG++ Q L P I
Sbjct: 139 DQQPYYAC---ILSPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPHI 195
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLF 308
++ TPGR++DHL N+ L +L L++DEADRLL++ F + ++++ P + R T LF
Sbjct: 196 IIGTPGRLMDHLENTRGFSLRNLKYLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYLF 255
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368
SAT+T +D+L + SLT P++ + + TL + ++ + ++ L+ L ++
Sbjct: 256 SATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLVQTLMVVPGGV---KDTYLVYLLNEF 312
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
+IIF+ TK A R+ L L A LHG+L Q QR AL+LF+ L+ATD
Sbjct: 313 IGKSMIIFTRTKANAERISGLANLLQFSATALHGDLNQNQRTGALDLFKAGRRSILVATD 372
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+ I +
Sbjct: 373 VAARGLDIPSVDVVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEV 432
Query: 489 AGSKL 493
G KL
Sbjct: 433 LGKKL 437
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 212/365 (58%), Gaps = 8/365 (2%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L L L +AC AL + P+ IQ IPLAL G+DI G A TGSGKTAAFALP L+ LL
Sbjct: 53 LGLVDTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLD 112
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
P+R A+ +LTPTRELA Q+ E + ++CC+VVGG+ Q L P I
Sbjct: 113 NPQRYFAV---VLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHI 169
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR++DHL N+ L L L++DEADR+L + F E+++++R+ P+ R+T LFS
Sbjct: 170 IIATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFS 229
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 368
AT+T+ V +L + SL P+++ + L + + I + ++V +L L +
Sbjct: 230 ATMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNS 289
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F +IF T R ++ L A LHG +TQ +RL AL F+ Q LI+TD
Sbjct: 290 F----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTD 345
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VA+RGLDI V V+N P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 346 VASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHL 405
Query: 489 AGSKL 493
KL
Sbjct: 406 LSKKL 410
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 117 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 176
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 177 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 233
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 234 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 293
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 294 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 353
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 354 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 409
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 410 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 469
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 470 IEHLIGKKL 478
>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
Length = 375
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 225/370 (60%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+S+P+L+A E Y PTPIQ IP+ L GRD+ G A TG+GKTAAFA+P ++
Sbjct: 2 TFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQ 61
Query: 186 RLLYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L R I+ LILTPTRELA+Q+ + ++FT +RCC++ GG+S Q L
Sbjct: 62 QLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKEL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI++ATPGR++D + + + L+ + +LDEADR+L++GF +I +L+ L PKRR
Sbjct: 122 ERGVDILIATPGRLLDLISQHI-ITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT+ E + +L K L KP R+ P + T+ + + + + ++ + +L+S
Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTD---LLVS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ ++FS TK A R+ ++ +HGN +Q R AL F+
Sbjct: 238 VLKNDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+AARG+DI +Q VINY P +YVHR+GRT RAG G A+TF T +R +++
Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVR 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60681162|ref|YP_211306.1| ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343]
gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|383117799|ref|ZP_09938542.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|423249596|ref|ZP_17230612.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|423256091|ref|ZP_17237019.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|423258064|ref|ZP_17238987.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|423264968|ref|ZP_17243971.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|423268460|ref|ZP_17247432.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|423273980|ref|ZP_17252927.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|423285051|ref|ZP_17263934.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
9343]
gi|251946848|gb|EES87130.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|387777510|gb|EIK39607.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|392649282|gb|EIY42960.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|392655681|gb|EIY49323.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|392703744|gb|EIY96885.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|392704701|gb|EIY97836.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|392707413|gb|EIZ00532.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|404579640|gb|EKA84354.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
Length = 427
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L+
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALRS
Sbjct: 62 KL-YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
I+VATPGR++D + + L L +LDEADR+L++GF +I +++L P RRQT
Sbjct: 121 GIQILVATPGRLLDLISQGF-ISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKK---EKKDLLIHLL 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LI
Sbjct: 237 KDTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356
Query: 486 AKRAGSKL 493
K G +
Sbjct: 357 QKLIGKNI 364
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 217/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + L + CE+L + PT IQ IPL L GRD+ G A TGSGKT AFALP L+
Sbjct: 23 TFKDLGIVDVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQ 82
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ + + ++ ++VGG+ Q L
Sbjct: 83 ALLQNPQRYFA---LILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAK 139
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 140 KPHVIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRT 199
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + + I + ++V +++ +
Sbjct: 200 LLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEM 259
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
TF +IF GT R +L A LHG ++Q +RL AL FR ++ L
Sbjct: 260 AGNTF----MIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSIL 315
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 316 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 375
Query: 485 IAKRAGSKL 493
I + G KL
Sbjct: 376 IEQLIGKKL 384
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 208/360 (57%), Gaps = 6/360 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + ++ AC +G+ PTPIQ IP AL RD+ G A TGSGKTAAF +P L+
Sbjct: 110 AFSDLGVIPQIVEACTNMGFKHPTPIQVKSIPEALQSRDVIGLAQTGSGKTAAFTIPILQ 169
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK A +L PTRELA Q+ +E + +R +VGG+ Q AL
Sbjct: 170 ALWDNPKPFFAC---VLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSK 226
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR+ DHL N+ L L L++DEADRLL++ F I +L++ P+ R+T
Sbjct: 227 RPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRT 286
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+T V +L + SL P+R+ D STL + + M +++ L+ L
Sbjct: 287 MLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYL---FMPFAHKDTYLVHLA 343
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T + RL IL L A LHG L+Q RL AL F+ L+
Sbjct: 344 NEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 403
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+NY P + Y+HRVGRTARAGR G +VT VT D LL+ I
Sbjct: 404 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 463
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/390 (39%), Positives = 230/390 (58%), Gaps = 13/390 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E N+S+ L+RA + +G+ P+PIQ IP L G D+ G A TG+GKTAAF +P LE
Sbjct: 3 TFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPILE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L KR ++ +ILTPTRELA+QV I+K+++F ++ V GG S Q L+
Sbjct: 63 KL----KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKR 118
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DIVV TPGR++DH+ N ++DL + +LDEAD +L++GF +I +++++ + RQT
Sbjct: 119 GVDIVVGTPGRVLDHV-NRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQT 177
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ + +L + P +++ S ++ + ++ E N+ L L
Sbjct: 178 LLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVL---EKNKLDSLCRLI 234
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T IIF TK+ L +A LHG+LTQ+QR ++ FR +DFLI
Sbjct: 235 DSENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLI 294
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARG+D+ V V+NY P+D SYVHR+GRT RAGREG A+T VT + L++I
Sbjct: 295 ATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSI 354
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMED 515
K+ S Q++ ++IE+ +D
Sbjct: 355 ENEIKMKIPS-----QNLPSVEEVIEKQQD 379
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 218/380 (57%), Gaps = 8/380 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F L + L AC+ LG+ P+ IQ IP+AL G+D+ G A TGSGKT AFALP L
Sbjct: 14 TTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 73
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ LL P+R+ A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 74 QALLDNPQRLFA---LILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLA 130
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I++ATPGR+IDHL N+ L L L++DEADR+L + F E+ +L+++ PK R+
Sbjct: 131 KKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERR 190
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLS 363
T LFSAT+T+ V +L + SL P+++ + L + + I + ++ VL
Sbjct: 191 TFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYVLNE 250
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L +F ++F GT R+ ++ L A LHG ++Q++RL AL F+ +
Sbjct: 251 LAGNSF----MVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSI 306
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G +VTFVT D L +
Sbjct: 307 LVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQ 366
Query: 484 AIAKRAGSKLKSRIVAEQSI 503
I KL E+ +
Sbjct: 367 RIEHLIAKKLPQYPTVEEEV 386
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 87 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 146
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + + A L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 147 SLWHAQQPYFA---LVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 203
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T
Sbjct: 204 KPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRIT 263
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+++S + L + ++ + + + +L+ L
Sbjct: 264 YLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVN---DGYKNTILIHLL 320
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+
Sbjct: 321 NEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 380
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 381 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 440
Query: 486 AKRAGSKL 493
G KL
Sbjct: 441 ENVLGKKL 448
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/371 (43%), Positives = 219/371 (59%), Gaps = 10/371 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L+ L ACE+ G+ P+ IQ IP+ALTGRD+ G A TGSGKT AFALP L+
Sbjct: 31 SFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQ 90
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +P+R+ A LILTPTRELA Q+ EK+ + I+C ++VGG+ Q L
Sbjct: 91 ALLEKPQRLFA---LILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGK 147
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR--R 303
P I+VATPGR+IDH+ N+ DL L LI+DEADR+L + F E+ +++ P+ R
Sbjct: 148 KPHIIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGR 207
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLL 362
+ MLFSAT+T+ V +L + SL P+R+ + L + + I + +E+ ++
Sbjct: 208 KNMLFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIIN 267
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L +F IIFS T +L +L A L+G ++Q +RL +L F+ +
Sbjct: 268 ELAGNSF----IIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRS 323
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATDVA+RGLDI V VINY P Y+HRVGRTARAGR G A+TFV D L
Sbjct: 324 ILIATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELY 383
Query: 483 KAIAKRAGSKL 493
+ I G KL
Sbjct: 384 QRIETLIGKKL 394
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 5/363 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL LS PLLRA + GY P+PIQ IP L G+D+ +A TG+GKTA F LP L
Sbjct: 2 SFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLH 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P R A+R L+LTPTRELA QV + ++ ++ +V GG++ Q A+R
Sbjct: 62 RLSRGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAMR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L + ++ L VLILDEADR+L++GF +I +++ + PK RQ
Sbjct: 122 KGADVLVATPGRLLD-LVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T++FSAT ++++ L K L +P+++ P T+ + + + + R+ A+L L
Sbjct: 181 TLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRK---PALLCHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F TK A++L A ++AA +HGN +Q R AL F+ V L
Sbjct: 238 IKHNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + V+NY P YVHR+GRT RAG EG+A++ V+ +++ LL
Sbjct: 298 VATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVD 357
Query: 485 IAK 487
+ K
Sbjct: 358 VEK 360
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 213/371 (57%), Gaps = 6/371 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A +F L L PLL A E L + PT IQ +P AL GRDI G A TGSGKTAAFALP
Sbjct: 18 APTFKSLGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPI 77
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L++L PK + A I+ PTRELA Q+ IE + +RC +VGG+ Q AL
Sbjct: 78 LQKLWEEPKGLFAC---IMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVAL 134
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P IVVATPGR+ DHL ++ L L L+LDEADRLL++ F I ++++ P+ R
Sbjct: 135 AKRPHIVVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRER 194
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
T LFSAT+T V +L + SL+ P+R+ STL + + I V ++ L+
Sbjct: 195 TTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPL---VQKDVHLIY 251
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + + +IIF+ T A RL I+ A LHG L+Q+ RL AL F+
Sbjct: 252 LANILAQNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKV 311
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L++
Sbjct: 312 LVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQ 371
Query: 484 AIAKRAGSKLK 494
I G K++
Sbjct: 372 RIETTIGKKME 382
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 226/410 (55%), Gaps = 16/410 (3%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALG 144
+ D DQ E+ D D+ + A+ + + S+ +L L L AC L
Sbjct: 24 NGDDSSDQEENGSGTDVDEEQDG--------QAENGTDVSKSWEDLGLIDTLCTACRGLK 75
Query: 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204
+ P+ IQ IPLAL G+DI G A TGSGKT AFALP L+ LL P+R A+ +LTP
Sbjct: 76 WKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFALPILQALLDNPQRYFAV---VLTP 132
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELA Q+ E + ++CC++VGG+ Q L P I++ATPGR++DHL N+
Sbjct: 133 TRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPHIIIATPGRLVDHLENT 192
Query: 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
L + L++DEADR+L + F E+++++++ P+ R+T LFSAT+T+ V +L + SL
Sbjct: 193 KGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERRTFLFSATMTKKVKKLERASL 252
Query: 325 TKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383
P+++ + L + + I R + V VL L +F +IF T
Sbjct: 253 RDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGNSF----MIFCSTCNNT 308
Query: 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443
R ++ L A LHG +TQ +RL AL F+ Q LI+TDVA+RGLDI V V+
Sbjct: 309 VRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILISTDVASRGLDIPHVDVVL 368
Query: 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
N P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 369 NLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLGKKL 418
>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
Length = 506
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 217/380 (57%), Gaps = 18/380 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+
Sbjct: 55 TFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 114
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ A L+LTPTRELA Q+ E + + ++VGG+ Q AL
Sbjct: 115 SLLDHPQ---AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 171
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL N+ +L L LI+DEADR+L + F E+ +++++ PK R+T
Sbjct: 172 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 231
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + SL P R+S K L + + I +E L+ L
Sbjct: 232 YLFSATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKY---KETYLVYLL 288
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA------------QRLEAL 413
++ + I+F T A ++ ++ ++A LHG ++Q +RL +L
Sbjct: 289 NEHAGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSL 348
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
F+ + D L+ TDVAARGLDI V VINY P YVHRVGRTARAGR G A+T
Sbjct: 349 NKFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITV 408
Query: 474 VTDNDRSLLKAIAKRAGSKL 493
VT D + I G KL
Sbjct: 409 VTQYDVEGYQKIEANLGKKL 428
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 31 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 90
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 91 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 147
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 148 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 207
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 208 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 267
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG ++Q +RL +L F+ + L
Sbjct: 268 AGNSF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLNKFKAKARSIL 323
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 324 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 383
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 384 IEHLIGKKL 392
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L LS LLRA A GY++PTPIQ IP L GRD+ A TG+GKTAAF LP L+
Sbjct: 2 SFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 186 RLLYRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
RL + R P R L+LTPTRELA QV + Q+ +R + GG+ Q T
Sbjct: 62 RLSQSGQQASARSPQPRALVLTPTRELAAQVGESVSAYGQYLPLRALQIFGGVGMGPQIT 121
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
ALR DI+VATPGR++DH+ ++DL + +L+LDEADR+L++GF I +++L P
Sbjct: 122 ALRRGVDILVATPGRLLDHV-GQGNLDLGHVELLVLDEADRMLDMGFMPAIRRVLKLLPA 180
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
RRQ +LFSAT + D+++L L PLR+ R +T E V ++ E + L
Sbjct: 181 RRQNLLFSATYSRDIEQLATGLLNDPLRIEV----ARRNTAAETVRQLAHPVERGHKRAL 236
Query: 362 LS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LS L + + ++F+ TK A+RL + AA +HGN +Q+ R AL F++
Sbjct: 237 LSHLIASGGWDQTLVFTRTKHGANRLAQQLERDGISAAAIHGNKSQSARTRALADFKRGA 296
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + S
Sbjct: 297 VRTLVATDIAARGLDIERLPHVVNFELPNVAEDYVHRIGRTGRAGESGTAVSLVSPEEGS 356
Query: 481 LLKAIAKRAGSKLKSRIV 498
LL I + G +++S+ +
Sbjct: 357 LLAGIERLLGRRIESQAI 374
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 216/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ
Sbjct: 122 RGVDVLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/411 (38%), Positives = 233/411 (56%), Gaps = 20/411 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+
Sbjct: 25 TFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL
Sbjct: 85 ALLETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGIDTVTQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T
Sbjct: 142 RPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
L+SAT+T+ V +L + SL P+R+ + L + + I +EA L+ +
Sbjct: 202 YLYSATMTKKVAKLERASLVDPVRIEVSSKYQTVDKLKQYYIFIPYK---YKEAYLIYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F T +A + ++ A LHG ++QA+RL +L F+ + L+
Sbjct: 259 NEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLV 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVA+RGLDI V V+NY P YVHRVGRTARAGR G AVTFVT D + + I
Sbjct: 319 CTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQKI 378
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ G KL + E +E+ V +++ E + L K EM+
Sbjct: 379 ERLIGKKL--------------PLFETVENDVMLLVERVEEAQKLAKQEMK 415
>gi|398855606|ref|ZP_10612087.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398230573|gb|EJN16591.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 446
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 225/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K IIF+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIIFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 216/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F L LS P+L+A E GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LE
Sbjct: 2 GFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKR-IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PKR +R L+LTPTRELA QVH +EK ++ + +V GG+ Q LR
Sbjct: 62 RLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ
Sbjct: 122 RGVDVLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S AKR +T + M + + VL L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISV---AKRNTTAETVEQSVYVMDKGRKPKVLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ L A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 233/409 (56%), Gaps = 12/409 (2%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGY 145
SD+E D +E EDED+ + +G AP + ++ +L L+ L +AC+ L +
Sbjct: 34 SDNENDVNE-VDSEDEDEPAASGSESDTAAPTEDQKL---TWKDLGLNDTLCQACDELKW 89
Query: 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205
P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL P+R A L+LTPT
Sbjct: 90 KAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYFA---LVLTPT 146
Query: 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
RELA Q+ E + I+CC+VVGG+ Q L P I++ATPGR++DHL N
Sbjct: 147 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMK 206
Query: 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
+L + L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+ V +L + SL
Sbjct: 207 GFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLK 266
Query: 326 KPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384
P+++ + L + + I + ++V +L L +F +IF T
Sbjct: 267 DPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTV 322
Query: 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444
+ ++ L A LHG ++Q +RL AL F+ ++ LI+TDVA+RGLDI V V+N
Sbjct: 323 KTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVN 382
Query: 445 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+ P Y+HRVGRTARAGR G A+T V+ D L + I G +L
Sbjct: 383 FDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLLGKQL 431
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 233/409 (56%), Gaps = 12/409 (2%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGY 145
SD+E D +E EDED+ + +G AP + ++ +L L+ L +AC+ L +
Sbjct: 34 SDNENDVNE-VDSEDEDEPAASGSESDTAAPTEDQKL---TWKDLGLNDTLCQACDELKW 89
Query: 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205
P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL P+R A L+LTPT
Sbjct: 90 KAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYFA---LVLTPT 146
Query: 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
RELA Q+ E + I+CC+VVGG+ Q L P I++ATPGR++DHL N
Sbjct: 147 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMK 206
Query: 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
+L + L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+ V +L + SL
Sbjct: 207 GFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLK 266
Query: 326 KPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384
P+++ + L + + I + ++V +L L +F +IF T
Sbjct: 267 DPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTV 322
Query: 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444
+ ++ L A LHG ++Q +RL AL F+ ++ LI+TDVA+RGLDI V V+N
Sbjct: 323 KTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVN 382
Query: 445 YACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+ P Y+HRVGRTARAGR G A+T V+ D L + I G +L
Sbjct: 383 FDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLLGKQL 431
>gi|359782600|ref|ZP_09285820.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359369420|gb|EHK69991.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 630
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 217/369 (58%), Gaps = 16/369 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF+ L LS L RA E GY+ PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFISLGLSEALARAVEDAGYTNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLLYRPKRIP--------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
RL P P RVL+LTPTRELA QVH + A+ +R V GG+ K
Sbjct: 62 RLF--PNGHPDGRQHVAKQPRVLVLTPTRELAAQVHDSFKVYARDLPMRSACVFGGVGLK 119
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q TAL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 120 PQVTALAKGVDVLVACPGRLLD-LAGQQSVDLSAVEILVLDEADRMLDMGFIHDVKKVLA 178
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVN 356
P RRQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 179 RLPARRQNLLFSATFSKDITDLAGKLLQDPERIEVTP----PNTTVERIEQRLFRIPANQ 234
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL F
Sbjct: 235 KRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIHGNKSQNARTKALADF 294
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V+
Sbjct: 295 KSNEVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVSP 354
Query: 477 NDRSLLKAI 485
++ LLKAI
Sbjct: 355 DEEKLLKAI 363
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 226/384 (58%), Gaps = 14/384 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L L+R CEA+G +PTPIQ CIP L G D G A TGSGKTAAFALP L+
Sbjct: 13 SFSGLGLHDWLVRQCEAVGIKQPTPIQHNCIPPILKGSDCIGCAKTGSGKTAAFALPILQ 72
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P + L++TPTREL +Q+ + + +R +V+GG+ Q L
Sbjct: 73 KLSEDPY---GVFGLVVTPTRELGIQIAEQFRVLGKPIGLRVTVVIGGIDMVEQGRELSK 129
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+ DH++++ + DL + L+LDEADRLLE F ++ + P +RQT
Sbjct: 130 KPHIVIATPGRLADHIKSTSTFDLHAIKFLVLDEADRLLEGNFGPDLEVIFDFLPAKRQT 189
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQEAVLLSL 364
+LFSAT+T+ + EL K+S+ KP +K P E++ R M ++A L+ +
Sbjct: 190 LLFSATITDTMKELQKMSMDKPFSW----HSKAPVATVEQLDQRYVLMPAQVKDAYLMYI 245
Query: 365 CSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
S+ FT K +IIF+ T + H L I+ ++ A LH + Q R+ +L +F+
Sbjct: 246 ISE-FTEKNRDHSLIIFTSTCKYCHVLSIMLRNLGMQCATLHSLVKQKTRIASLAMFKSN 304
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
HV L+ATD+A+RGLDI VQ +IN+ P Y+HRVGRTARAGR G ++T VT D
Sbjct: 305 HVRILVATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVGRTARAGRGGMSITMVTQFDV 364
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSI 503
L++AI K +K+ V E+++
Sbjct: 365 KLVQAIEKTINTKMTEYKVPEKNV 388
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT I IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q++RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377
Query: 485 IAKRAGSKL 493
I G KL
Sbjct: 378 IEHLIGKKL 386
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 217/377 (57%), Gaps = 7/377 (1%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
AD + SF +L ++ L AC LGY+KPTPIQA IP AL RDI G A TGSGKT
Sbjct: 44 ADASEEVTKSFKDLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKT 103
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AAFALP ++ LL +P+ A L+L PTRELA Q+ E + +R ++VGGL
Sbjct: 104 AAFALPVIQALLEKPQ---AFFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDM 160
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q AL P ++VATPGR++DHL + L L L++DEADRLL++ F I +++
Sbjct: 161 VAQAIALGKKPHVIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKIL 220
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREV 355
+ P+ R+T LFSAT++ ++ L + SL P+R+S + + STL + + I
Sbjct: 221 KFIPRERRTFLFSATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQL-- 278
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
++ L+ L ++ K+++F+ T RL IL A LHG L Q RL AL
Sbjct: 279 -KDTYLVYLANEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNK 337
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
FR L+ATDVAARGLDI V VIN+ +D ++VHR+GRTARAG+ G A++ VT
Sbjct: 338 FRAGERSILVATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVT 397
Query: 476 DNDRSLLKAIAKRAGSK 492
D + I G K
Sbjct: 398 QYDLEIWLRIEAALGKK 414
>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
Length = 436
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 7/375 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS PLLRA GY P+PIQA IP L +D+ SA TG+GKTA F LP L
Sbjct: 2 SFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLH 61
Query: 186 RLLYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L RP K P IR LILTPTRELA QVH+ +++ ++F +I+ ++ GG++ K Q +
Sbjct: 62 LLSQRPVQKHRP-IRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATI 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID L + + L + + +LDEADR+L++GF +I +++L P +R
Sbjct: 121 RKGVDVLVATPGRLID-LESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L L P+++ A P + ++V R+ + ++ +++
Sbjct: 180 QNLMFSATFSKDIKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKT---GLIIK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L S+ +V++F+ TK A++L A + AA +HGN +Q R +AL F+ V
Sbjct: 237 LISEGNWKQVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+NY P YVHR+GRT RAG G A++ V+ ++ + L+
Sbjct: 297 LVATDIAARGLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLR 356
Query: 484 AIAKRAGSKLKSRIV 498
+I K K++ +V
Sbjct: 357 SIEKLIDMKIEVEVV 371
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 221/365 (60%), Gaps = 7/365 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A + GYS PTPIQ IPL L +DI GSA TG+GKTA F LP L+
Sbjct: 2 SFENLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQ 61
Query: 186 RLLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RL+ K IR LILTPTRELA QV +E + +R +V GG++ + Q
Sbjct: 62 RLMLEKKNGGGKRHIRALILTPTRELAAQVCKSVETYGKHLPLRSTVVFGGVNMEAQVRR 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DIVVATPGR++DH+ ++DL + VLILDEADR+L++GF ++ ++ L PK
Sbjct: 122 LQYGVDIVVATPGRLLDHI-GQRTIDLSRVDVLILDEADRMLDMGFIPDVKRIIALLPKG 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ +LFSATLT +V +L L P+ + P +++ V + R R + +L
Sbjct: 181 RQNLLFSATLTNEVKKLAMGFLNNPVVVEVAPQNTASELVSQVVHHVDRRR---KRELLS 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ + +V++F+ TK A+RL + + A +HGN TQA R +ALE F+K+ V
Sbjct: 238 HIINTKKWQRVLVFTRTKHGANRLAEELSIDGISATAIHGNKTQAARTKALEQFKKEAVR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ +LL
Sbjct: 298 VLVATDIAARGLDIQQMPHVVNFDLPHVPEDYVHRIGRTGRAGHEGEALSLVCVDELNLL 357
Query: 483 KAIAK 487
+ I +
Sbjct: 358 RNIER 362
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/404 (38%), Positives = 228/404 (56%), Gaps = 7/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL+L L++AC L +SKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 76 SFNELDLVPELIQACHNLNFSKPTPIQSKSIPPALEGHDIIGLAQTGSGKTAAFAIPILN 135
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L + A IL PTRELA Q+ + + +R +VGG++ Q L
Sbjct: 136 KLWEDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQSRELMR 192
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F + ++++ P + R
Sbjct: 193 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQDRT 252
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +++L + SLT P++ + + TL + ++ + + L+ L
Sbjct: 253 TYLFSATMTSKIEKLQRASLTNPVKCAVSNKYQTVETLVQTLMVVPGGL---KNTYLIYL 309
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ +I+F+ TK A RL L L + LHG+L Q QR AL+LF+ L
Sbjct: 310 LNEFIGKSIIVFTRTKANAERLSALSNLLEFSSTALHGDLNQNQRTGALDLFKAGKRQIL 369
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+A DVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 370 VAIDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 429
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL V + +I + +++ +V + +E+
Sbjct: 430 IEDVLGKKLPKENVDKNTIMMFRDSVDKANGEVVMEMNRRNKEK 473
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 222/368 (60%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ + RA GY+ PTPIQ IP+ L GRD+ G+A TG+GKTA F+LP ++
Sbjct: 38 TFADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 97
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
L+ P R P +R LILTPTRELAVQV ++ A+ T +R +V GG+ K Q
Sbjct: 98 LLMAHASSSMSPARHP-VRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQ 156
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +IV+ATPGR++DH+ ++ L + +L++DEADR+L++GF ++ ++ L
Sbjct: 157 TVLLRGGVEIVIATPGRLLDHIEQK-NISLSQVQMLVMDEADRMLDMGFLPDLQRIINLL 215
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK+RQ ++FSAT + ++ +L L PL + S + +T+ V ++ E + A
Sbjct: 216 PKQRQNLMFSATFSPEIKKLAATFLNDPLTIEVARSNQTADKVTQVVYKVS---EDQKHA 272
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L + +VI+FS TK A RL + + A +HG+ +Q +R+ ALE F+K
Sbjct: 273 LVAHLLRQRDLKQVIVFSNTKIGASRLARVLEQEGMSATAIHGDKSQQERMAALEAFKKG 332
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ +D D
Sbjct: 333 EIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISIYSDKDE 392
Query: 480 SLLKAIAK 487
LL I K
Sbjct: 393 RLLADIEK 400
>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 436
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 228/372 (61%), Gaps = 8/372 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L+LS LLR+ E LGY + TPIQAA IP+ L G D+ +A TGSGKTAAF+LP +E
Sbjct: 2 SFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIE 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQETAL 243
RL ++ R L+L PTRELAVQV + IE+ A+ R + GG+ Q A
Sbjct: 62 RLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKAA 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ ++VVATPGR+ID L SV LD++ +L+LDEADRLL LGF+ E++ ++ + P+ R
Sbjct: 122 YAGVEVVVATPGRLID-LAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL- 362
Q +LFSAT ++V L L P+++ + +++ ++ + + + + N LL
Sbjct: 181 QNLLFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAIEV----DGNSRTGLLR 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L +V++F G+K+ A + + +KA LHGN++Q +R +LE F++ V
Sbjct: 237 HLLETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARG+DI G+ V+NY PR YVHR+GRT RAG G AV F+TD+ +
Sbjct: 297 VLMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHF 356
Query: 483 KAIAKRAGSKLK 494
+ I K+ G +L+
Sbjct: 357 RLIEKKNGLRLE 368
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 223/374 (59%), Gaps = 11/374 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F N + + A GY PTPIQA IP + GRD+ G A TG+GKTAAFALP L+R
Sbjct: 3 FNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQR 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ P+ +R L++ PTRELA Q+H I ++ + T +R V GG++ + Q L+
Sbjct: 63 LIDGPRG--RLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRG 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
DIVVA PGR+IDH+ ++DL ++ VL+LDEAD++ ++GF + +++R P +RQT+
Sbjct: 121 VDIVVACPGRLIDHI-GQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTL 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLLSL 364
LFSAT+ + L LT P+ + +T E V + + + + A+LL L
Sbjct: 180 LFSATMPAAIRRLSGEVLTSPMTVQVG------NTTPAETVSHALYPVAQHQKTAMLLEL 233
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S + V++F+ TK A RL + G A +A L GNL+QA+R EAL FR + L
Sbjct: 234 LSAVDSRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEIL 293
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ V VINY P +YVHR+GRT RA R+G A T VT D ++++A
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRA 353
Query: 485 IAKRAGSKLKSRIV 498
I K + L+ R +
Sbjct: 354 IEKVLDASLERRTI 367
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 223/374 (59%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A GY+ P+PIQ IP+ L G+D+ SA TG+GKTA F LP +
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 186 RLLYRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL+ PK+ IR L+LTPTRELA Q+ + + +++ DI+ ++ GG++ Q LR
Sbjct: 62 RLINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L+N + L D+ L+LDEADR+L++GF +I +++++ P +RQ
Sbjct: 122 QGVDILVATPGRLLD-LQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT D+ + LT P+ + A P + ++ R+ + R+ +L+
Sbjct: 181 NLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTE---MLIKF 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++F+ TK A+RL + +A +HGN TQ R++AL F+ V L
Sbjct: 238 IREGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VINY P YVHR+GRT RAG G A++ V ++ ++
Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRG 357
Query: 485 IAKRAGSKLKSRIV 498
I K G KL S ++
Sbjct: 358 IEKLLGEKLHSEVL 371
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 222/373 (59%), Gaps = 7/373 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F L LS P+LRA EA+G+ +PTPIQ IPL L GRD+ A TG+GKTAAFALP ++
Sbjct: 3 GFAALGLSEPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQ 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL +P + + L+L PTRELAVQV + +F DIR V GG + Q ALR
Sbjct: 63 RL--KPDQ-KGPQALVLAPTRELAVQVAQAFYSLGKFQDIRVLAVYGGQPIERQLRALRF 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+V TPGR++DHLR ++ +D+++++LDEAD +L++GF +I ++ P +RQ
Sbjct: 120 PVDIIVGTPGRIMDHLRRE-TLSFEDISMVVLDEADEMLDMGFVEDIEWILDQVPAQRQI 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+ + +L + L KP+R++ +P +R + E V + + EA L +
Sbjct: 179 ALFSATIPNRIVDLSRRYLQKPVRIAIEP--ERVTVPLTEQVYYQVVPRAKVEA-LTRIL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T S IIF TK+ L A LHG+L+Q QR + FR + LI
Sbjct: 236 DLTAPSSAIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELLI 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VINY P D SYVHR+GRT RAGR G A+T VT + LL+AI
Sbjct: 296 ATDVASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRAI 355
Query: 486 AKRAGSKLKSRIV 498
+ G +++ R V
Sbjct: 356 ERATGGRIERRSV 368
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 229/388 (59%), Gaps = 12/388 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS +L+A GY P+PIQ IP L GRD+ +A TG+GKTA F LP LE
Sbjct: 2 SFASLGLSDAILKAISDQGYDTPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
RL + +R A RVLILTPTRELA QV + + ++ +V GG+ Q AL
Sbjct: 62 RL-SKGERAKANQARVLILTPTRELAAQVADSVATYGKHLQLKSAVVFGGVKINPQMMAL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R DI++ATPGR++D L + +V D+L L+LDEADR+L++GF +I ++RL P +R
Sbjct: 121 RKGADILIATPGRLLD-LHSQNAVRFDNLEALVLDEADRMLDMGFIHDIKRILRLLPSKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q +LFSAT ++D+ EL K + P+ +S P T+ + + + + R + +L+
Sbjct: 180 QNLLFSATFSKDIRELAKGLVNDPVEVSVTPRNSTAETVKQWIAPVDKKR---KSPLLIK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L +V++F+ TK A+RL A +KAA +HGN +Q R +AL F+ + +
Sbjct: 237 LIKDNSWYQVLVFTRTKHGANRLATQLDKANIKAAAIHGNKSQGARTKALNAFKTKDIQV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG +G AV+ V+ ++ L+
Sbjct: 297 LVATDIAARGLDIDLLPQVVNFDLPNVAEDYVHRIGRTGRAGADGQAVSLVSADEIDQLR 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIE 511
AI +L S+I+ + I + + E
Sbjct: 357 AI-----ERLTSKIIPREMIDGFEPVHE 379
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 233/411 (56%), Gaps = 20/411 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ L + KPT +Q A +P A RDI G A TGSGKTAAFA+P L+
Sbjct: 25 TFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+++ A L+LTPTRELA Q+ E + I ++VGG+ T Q AL
Sbjct: 85 ALLETPQKLFA---LVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ PK R+T
Sbjct: 142 RPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
L+SAT+T+ V +L + SL P+R+ + L + + I +EA L+ +
Sbjct: 202 YLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYK---YKEAYLIYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ I+F T +A + ++ A LHG ++QA+RL +L F+ + L+
Sbjct: 259 NEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLV 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVA+RGLDI V V+NY P YVHRVGRTARAGR G A+TFVT D + + I
Sbjct: 319 CTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQKI 378
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
+ G KL + E +E+ V +++ E + L K EM+
Sbjct: 379 ERLIGKKL--------------PLFETVENDVMLLVERVEEAQKLAKQEMK 415
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 232/412 (56%), Gaps = 22/412 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L + L +ACE L + PT IQ IPLAL G+DI G A TGSGKTAAFALP L+
Sbjct: 19 TWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPILQ 78
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 79 ALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAK 135
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 136 KPHILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKT 195
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEL 255
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ L
Sbjct: 256 AGNSF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
I EQ I+K + E++V + + E R + K EM+
Sbjct: 372 I--------------EQLISKQLPLYATQEEEVMVLEERVAEARRIVKMEMK 409
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 245/447 (54%), Gaps = 24/447 (5%)
Query: 50 SESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDH--SDSEFDQHEDYKPEDEDDFSNA 107
SE+ DE + +T+ D ++ + + DNDH D+E Q ED SN
Sbjct: 2 SETSEDEQTQLQTSDDDEDLSG---EEELEDGDNDHVEEDNEAAQ------SGEDKLSNG 52
Query: 108 GDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+ + D A ++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G
Sbjct: 53 SEPED-----DAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIG 107
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TGSGKT AFALP L LL P+R A L+LTPTRELA Q+ E + I+C
Sbjct: 108 LAETGSGKTGAFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKC 164
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
C+VVGG+ Q L P I++ATPGR++DHL N +L + L++DEADR+L +
Sbjct: 165 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMD 224
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ +++++ P+ R+T LFSAT+T+ V +L + SL P+++ + L + +
Sbjct: 225 FEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYL 284
Query: 348 RIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
I + ++V +L L +F +IF T + ++ L A LHG ++Q
Sbjct: 285 FIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQ 340
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+RL AL F+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR
Sbjct: 341 NKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 400
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKL 493
G A+T V+ D L + I G +L
Sbjct: 401 SGKAITLVSQYDIELYQRIEHLLGKQL 427
>gi|408792586|ref|ZP_11204196.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463996|gb|EKJ87721.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 471
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 220/370 (59%), Gaps = 6/370 (1%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
H +F +L L R + +A GY+KPTPIQ IPL L D+ G A TG+GKTAAFALP
Sbjct: 4 HIETFSDLKLDRSIQKAVVETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALP 63
Query: 183 TLERLL-YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
+ L+ R K P R L+L PTRELA+QVH ++T IR ++ GG+ Q
Sbjct: 64 MIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQA 123
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
A+ S D+++ATPGR++D L N V L +L + +LDEADR+L++GF +I +++ P
Sbjct: 124 KAIASGLDVLIATPGRLVD-LMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLP 182
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
KRRQ + FSAT+ ++++L L +P+R+ P + +++ V+ + N +
Sbjct: 183 KRRQNLFFSATMPSEIEKLANSILVEPIRIDITPVSSTVELISQSVMYTELADKKN---L 239
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL L K IIF+ TK A+++ L + +K +HGN +Q+ R +ALE FR
Sbjct: 240 LLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQKALEDFRSGK 299
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
L+ATD+AARG+DI + VINY P +YVHR+GRTARAG+ G A+ ++RS
Sbjct: 300 NRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERS 359
Query: 481 LLKAIAKRAG 490
L+K I K G
Sbjct: 360 LIKDIEKVIG 369
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 216/374 (57%), Gaps = 12/374 (3%)
Query: 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFAL 181
FH +F ELNL L+ A E L Y+KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+
Sbjct: 63 FH--TFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAI 120
Query: 182 PTLERLL--YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
P L+ L RP L+L PTRELA Q+ + + +R +VGG+ Q
Sbjct: 121 PILQSLWEAQRP-----YYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQ 175
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
L P I+VATPGR++DHL N+ L L L++DEADRLL++ F + +++++
Sbjct: 176 ARDLMRKPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVI 235
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +R T LFSAT+T + +L + SL +P++++ + L + ++ + + +
Sbjct: 236 PTKRTTYLFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLV---SDGYKNT 292
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+ L ++ +I+F+ T R +L + A LHG LTQ+QRL +L F+
Sbjct: 293 FLIHLLNEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSG 352
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ LIATDVAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D
Sbjct: 353 KANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDL 412
Query: 480 SLLKAIAKRAGSKL 493
+ I G KL
Sbjct: 413 EMYLRIESVLGFKL 426
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 213/359 (59%), Gaps = 8/359 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 52 LCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 111
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P IV+ATPG
Sbjct: 112 A---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPG 168
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T+LFSAT+T+
Sbjct: 169 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTLLFSATMTKK 228
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 229 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 284
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 285 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 344
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 345 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 403
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +LN++ +L+A E GY PTPIQA IP L G+DI G A TG+GKTAAFA+P ++
Sbjct: 22 TFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQ 81
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L +I+ LILTPTRELA+Q+ I+ A++T +R ++ GG++ + Q L
Sbjct: 82 QLQADKSLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLHK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N V L+++ +LDEADR+L++GF +I L+ PK +QT
Sbjct: 142 GVDILVATPGRLLD-LMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ + + L L +P+++S P + + + V + + + +L+S+
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKE---KSKLLISIL 257
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
KT V++FS TK A R+ + G A + + +HGN +Q R ALE F+ + +I
Sbjct: 258 HKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A++F + +R L+ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 378 QKLTGKKL 385
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 6/372 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ LL A A GYS+PTPIQA IP L G+D+ +A TG+GKTAAF LP L +
Sbjct: 3 FDQLGLAPSLLEAVAAAGYSEPTPIQAKAIPAVLDGQDVLAAAQTGTGKTAAFTLPLLHK 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L R ++ P RVL+L PTRELA QV+ + + IR ++ GG+ + Q +
Sbjct: 63 LGDRQEKKP--RVLVLAPTRELAAQVNESVRTYGKSGAIRSTVIFGGVGYQPQIAQFKKG 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
DIVVATPGR++D L+ + DL ++ L+LDEADR+L++GF +I +++ P++RQT+
Sbjct: 121 VDIVVATPGRLLDLLQEGHA-DLSNIQTLVLDEADRMLDMGFIHDIKRVLKYVPEKRQTL 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT ++D+ +L L KP+ + P + ++VV + + R + AVL L
Sbjct: 180 LFSATFSKDIRKLASSLLHKPVEIDVAPRNATADRIDQKVVMVEKPR---KRAVLSHLIK 236
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +V++F+ TK A+RL L +A LHGN +Q R +ALE F+ + L+A
Sbjct: 237 ENGWHQVLVFARTKHGANRLCKQLESDGLPSAALHGNKSQNARTKALEGFKDGKIQVLVA 296
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TD+AARG+DI + V+NY P YVHR+GRT RAG G AV+ V ++R LLK I
Sbjct: 297 TDIAARGIDIESLPHVVNYELPNVSEDYVHRIGRTGRAGEAGEAVSLVGPDERKLLKDIE 356
Query: 487 KRAGSKLKSRIV 498
K G +++ V
Sbjct: 357 KLIGKQIERMTV 368
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 225/370 (60%), Gaps = 4/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+
Sbjct: 2 NFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK+ ++R LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL
Sbjct: 62 ILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQ 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT
Sbjct: 122 GVDILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ + + + L P ++ P + T+ + V + + + N +L+++
Sbjct: 181 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINIL 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T + +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LI
Sbjct: 238 KDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I
Sbjct: 298 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNI 357
Query: 486 AKRAGSKLKS 495
K G + +
Sbjct: 358 QKLIGFTMNT 367
>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
Length = 374
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 7/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L+RPLL A GY +PTPIQ IPLAL GRD+ G A TG+GKTA+F LP +
Sbjct: 2 TFADLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVVH 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL P+R RVL+LTPTREL +QV + K + + + V GG+ + QE ALR
Sbjct: 62 RLLGGPRRT---RVLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALRR 118
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
D+VVATPGR++DHL +VD L L+LDEADR+L++GF+ +I+ +V P+ RQT
Sbjct: 119 GVDVVVATPGRLLDHLEKR-NVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQT 177
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ +V+ L + L KP+ + + +T+T V + R R + +L+ L
Sbjct: 178 LLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHR---KNELLVHLL 234
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ + V++F+ TK A R+ A + A +H + +Q +R++ALE F+ + L+
Sbjct: 235 TNSDHESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLV 294
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+A RGLDI G+ VIN+ P+ YVHR+GRT RA G A TF++ + +++ I
Sbjct: 295 ATDIAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRTI 354
Query: 486 AKRAGSKL 493
+ G ++
Sbjct: 355 ERTIGQEI 362
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS L++A E GY+KP+PIQ IP L G+DI SA TG+GKTA F LP L+
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
L+ YRP +R L+LTPTRELA QVH + + +++ DI+ +V GG++ K Q
Sbjct: 62 YLVETKHPKYRP-----LRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQ 116
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LRS DI+VATPGR++D L + ++ + VLILDEADR+L++GF +I++++
Sbjct: 117 IATLRSGVDILVATPGRLLD-LHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFM 175
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ ++FSAT + D+ +L L P+ + P +T +V ++ + ++
Sbjct: 176 PAKRQNLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTE--- 232
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+ L + ++V++F+ TK A++L A + AA +HGN +Q R +AL+ F+
Sbjct: 233 FTIKLIKEGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDG 292
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ V +
Sbjct: 293 SIKILVATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEES 352
Query: 480 SLLKAIAKRAGSKLKSRIVA 499
I K KLKS IVA
Sbjct: 353 EYQSEIEKLLNEKLKSTIVA 372
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 232/412 (56%), Gaps = 22/412 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L + L +ACE L + PT IQ IPLAL G+DI G A TGSGKTAAFALP L+
Sbjct: 19 TWKDLGIVDILHKACEDLKWKSPTKIQCEAIPLALEGKDIIGLAETGSGKTAAFALPILQ 78
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 79 ALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAK 135
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 136 KPHILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKT 195
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEL 255
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ L
Sbjct: 256 AGNSF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
I EQ I+K + E++V + + E R + K EM+
Sbjct: 372 I--------------EQLISKQLPLYPTQEEEVMVLEERVAEARRIVKMEMK 409
>gi|363750628|ref|XP_003645531.1| hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889165|gb|AET38714.1| Hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
Length = 486
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 227/404 (56%), Gaps = 7/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L++ L+ ACE L ++KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L
Sbjct: 67 SFRDLDIVPELIEACENLKFTKPTPIQSKAIPPALQGNDIIGLAQTGSGKTAAFAIPILN 126
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L + + A IL PTRELA Q+ + + +R ++GG++ Q L
Sbjct: 127 QLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIMGGMNMMDQARDLMR 183
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQ 304
P I++ATPGR++DHL N+ L L L++DEADRLL++ F A + +++ P K R
Sbjct: 184 KPHIIIATPGRLMDHLENTKGFSLRKLRFLVIDEADRLLDMEFGAVLDRILKNIPTKGRT 243
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +D+L + SLT P++ S + TL + ++ + + L+ L
Sbjct: 244 TYLFSATMTSKIDKLQRASLTNPVKCSVSNKYQTVDTLIQTLMVVPGGL---KNTYLIYL 300
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ I+F+ TK A R+ L L A LHG+L Q QR AL+LF+ L
Sbjct: 301 LNEFIGKSTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSIL 360
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VINY P D SY+HRVGRTARAGR G +++ V+ D L+
Sbjct: 361 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 420
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL + + I +++ +V L +E+
Sbjct: 421 IEDVLGKKLPKEDINKNMILSLRDSVDKANGEVVMELNRRNKEK 464
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 234/412 (56%), Gaps = 22/412 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L L +ACE L +++P+ IQ IP+AL G+D+ G A TGSGKTAAFALP L+
Sbjct: 20 TWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQ 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ IE + ++C ++VGG+ Q L
Sbjct: 80 SLLENPQRYFA---LILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R T
Sbjct: 137 KPHILIATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
LFSAT+T+ V +L + L P+++ + L + + I + ++V +L +
Sbjct: 197 FLFSATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEM 256
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L L A LHG ++Q +RL AL F+ ++ L
Sbjct: 257 AGNSF----MIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 313 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 372
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
I EQ I K + + ED+V + + E + L K EM+
Sbjct: 373 I--------------EQLIGKQLPLYKTEEDEVMVLQERVAESQRLAKMEMK 410
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 218/368 (59%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + + A L+L PTREL Q+ + + +R +VGG+ Q L
Sbjct: 184 SLWHAQQPYFA---LVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 240
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T
Sbjct: 241 KPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTT 300
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+R++ + L + ++ + + + +L+ L
Sbjct: 301 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVN---DGYKNTILIHLL 357
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+
Sbjct: 358 NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 486 AKRAGSKL 493
G KL
Sbjct: 478 ESVLGKKL 485
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 245/447 (54%), Gaps = 24/447 (5%)
Query: 50 SESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDH--SDSEFDQHEDYKPEDEDDFSNA 107
SE+ DE + +T+ D ++ + + DNDH D+E Q ED SN
Sbjct: 2 SETSEDEQTQLQTSDDDEDLSG---EEELEDGDNDHVEEDNEAAQ------SGEDKLSNG 52
Query: 108 GDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+ + D A ++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G
Sbjct: 53 SEPED-----DAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIG 107
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TGSGKT AFALP L LL P+R A L+LTPTRELA Q+ E + I+C
Sbjct: 108 LAETGSGKTGAFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKC 164
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
C+VVGG+ Q L P I++ATPGR++DHL N +L + L++DEADR+L +
Sbjct: 165 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMD 224
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F E+ +++++ P+ R+T LFSAT+T+ V +L + SL P+++ + L + +
Sbjct: 225 FEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYL 284
Query: 348 RIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
I + ++V +L L +F +IF T + ++ L A LHG ++Q
Sbjct: 285 FIPVKYKDVYLVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQ 340
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+RL AL F+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR
Sbjct: 341 NKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 400
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKL 493
G A+T V+ D L + I G +L
Sbjct: 401 SGKAITLVSQYDIELYQRIEHLLGKQL 427
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 449
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 213/361 (59%), Gaps = 8/361 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLL A + L Y +PT IQ +P AL GRDI G A TGSGKTAAFALP L+
Sbjct: 15 TFKSLGLINPLLEALDQLKYKEPTDIQREALPHALEGRDIIGVASTGSGKTAAFALPILQ 74
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P+ + A +L PTRELA Q+ E + +RC ++VGG+ Q AL
Sbjct: 75 KLWEEPRGLFAC---VLAPTRELAYQISQQFEALGSAMGVRCAVLVGGMDLIDQAVALAK 131
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR+ HL + L L L+LDEADRLL+L F I +++++ PK R T
Sbjct: 132 KPHIIVATPGRLQQHLTETKGFSLRGLKFLVLDEADRLLDLDFGPVIDQILKIIPKERTT 191
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-LLSL 364
LFSAT+T V +L + SL+ P+R+ + STL + + I ++Q+ V L+ L
Sbjct: 192 YLFSATMTTKVAKLQRASLSNPIRVEVSSKYQTVSTLLQYYLFI----PLSQKDVHLIYL 247
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ ++ +IIF+ T A RL I+ + A LHG L+Q+ RL AL F+ L
Sbjct: 248 ANSLASNSIIIFTRTVHDAQRLSIMLRILGFPAVPLHGQLSQSARLGALAKFKSGGRKVL 307
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++
Sbjct: 308 VATDVASRGLDIPSVDIVINFDIPNHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQR 367
Query: 485 I 485
I
Sbjct: 368 I 368
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 210/350 (60%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + + + A+L L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKK---KSAMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITAAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|388455396|ref|ZP_10137691.1| ATP-dependent RNA helicase RhlE [Fluoribacter dumoffii Tex-KL]
Length = 461
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 225/370 (60%), Gaps = 7/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L PLL++ E LGY P+PIQ IP+ L G+D+ SA TG+GKTA+F LP L
Sbjct: 41 SFSSLGLIPPLLQSIEELGYKDPSPIQTKAIPIVLAGKDVLASAQTGTGKTASFVLPVLH 100
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +P+ + RVLILTPTRELA QVH I + ++ +R +V GG+ Q LR
Sbjct: 101 MLSAKPRAKSNRTRVLILTPTRELASQVHESIREYGRYLSLRSAVVFGGVKINPQMMKLR 160
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S +++VATPGR++D L ++ D + LILDEADR+L++GF +I ++ PK RQ
Sbjct: 161 SGVELLVATPGRLLD-LFQQRAIQFDQVDTLILDEADRMLDMGFIHDIRRIINCLPKNRQ 219
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 363
+LFSAT T+++ +L+K L +P+ + P + + + V + + +Q+A LLS
Sbjct: 220 NLLFSATFTDEIRKLVKTILNEPVAIDVTPRNTTVAKIKQTVHPVDK----SQKAALLSH 275
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K + ++FS TK A++L A + AA HGN +Q+QR + LE F+ +
Sbjct: 276 LIHKNKWGQTLVFSRTKHGANKLVKQLAEAQIYAAAFHGNKSQSQRTKTLEEFKSGELHI 335
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N+ P+ YVHR+GRT RAG G AV+ V+ ++ + L+
Sbjct: 336 LVATDIAARGIDIEQLPCVVNFDLPQVAEDYVHRIGRTGRAGAPGLAVSLVSADEINQLQ 395
Query: 484 AIAKRAGSKL 493
AI K KL
Sbjct: 396 AIEKLIQHKL 405
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 234/404 (57%), Gaps = 8/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L ++ L +AC+ LG+ PT IQ IP+AL GRD+ G A TGSGKT AFALP L+
Sbjct: 25 SFKDLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ T Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNEL 261
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +RL +L F+ + L
Sbjct: 262 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 317
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 318 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 377
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL + + E+ + ++ + + + L+E+ E++
Sbjct: 378 IEHLIGKKLPAFPMQEEEVMMLTERVAEAQRLARMELREQGEKK 421
>gi|405964769|gb|EKC30218.1| Putative ATP-dependent RNA helicase DDX47 [Crassostrea gigas]
Length = 1146
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 211/359 (58%), Gaps = 8/359 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L ACE L + PT IQ IP+AL G D+ G A TGSGKT AFALP L+ LL +P+R+
Sbjct: 50 LCEACEQLKWKTPTKIQKEAIPVALQGSDVIGLAETGSGKTGAFALPILQTLLDKPQRLY 109
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + I+C ++VGG+ Q L P IV+ATPG
Sbjct: 110 A---LVLTPTRELAFQISEQFEALGASIGIKCAVIVGGIDMMTQSLMLAKKPHIVIATPG 166
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ +L L L++DEADR+L + F E+ ++++ P+ R T+LFSAT+T+
Sbjct: 167 RLVDHLENTKGFNLRSLKYLVMDEADRILNMDFEQEVDKILKAIPRERNTLLFSATMTKK 226
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVI 374
V +L + SL P+R+ + L + + I + ++V +L L +F +
Sbjct: 227 VAKLQRASLQNPVRVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVYILNELAGNSF----M 282
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F T R+ ++ L A LHG ++Q++RL AL F+ ++ LIATDVA+RGL
Sbjct: 283 VFCSTCANTQRVALMLRNLGLTAIPLHGQMSQSKRLGALNKFKSKNRSILIATDVASRGL 342
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N P Y+HRVGRTARAGR G A+TFV+ D L + I G KL
Sbjct: 343 DIPHVDVVLNLDIPTHSKDYIHRVGRTARAGRSGVAITFVSQYDVELYQRIEHLIGKKL 401
>gi|427702007|ref|YP_007045229.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345175|gb|AFY27888.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 420
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 227/379 (59%), Gaps = 9/379 (2%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F L LS P+L+A A GYS P+PIQ CIP L G D+ +A TG+GKTA F LP
Sbjct: 5 ATDFAVLGLSEPILKAVAAKGYSSPSPIQRQCIPAVLAGHDVMAAAQTGTGKTAGFTLPM 64
Query: 184 LERLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERL + P R +R L+LTPTRELA QV + ++ D+R +V GG+S Q
Sbjct: 65 LERLRHGPHARAGVVRALVLTPTRELAAQVADSVTAYGRYLDLRSDVVFGGVSANPQMQR 124
Query: 243 LRSMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR D++VATPGR++D H +N++ LD + +L+LDEADR+L++GF +I ++ L P
Sbjct: 125 LRRGADVLVATPGRLMDLHQQNALR--LDRVEILVLDEADRMLDMGFIRDIRRILSLLPA 182
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+RQ +LFSAT + ++ L L P++L A P + + L E+V+ M +++ L
Sbjct: 183 KRQNLLFSATFSTEIRRLATGLLHTPVQLQATPE-NQAAPLVEQVIHPCDM---DRKGDL 238
Query: 362 LSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LS +T +V++FS TK A+RL L AA +HGN +Q R AL F+
Sbjct: 239 LSHLIRTNDWGQVLVFSRTKHGANRLAERLEKEGLGAAAIHGNKSQGARTRALAEFKSGE 298
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
V L+ATD+AARG+DI + V+N P YVHR+GRT RAG+ G+A++ V +
Sbjct: 299 VRVLVATDIAARGIDIHQLPHVVNLDLPNVAEDYVHRIGRTGRAGQNGHAISLVAAEEHE 358
Query: 481 LLKAIAKRAGSKLKSRIVA 499
LL+AI + GS L + VA
Sbjct: 359 LLRAIERLVGSPLPRQEVA 377
>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
Length = 551
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 209/350 (59%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 LLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + + + +L L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKK---KSPMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
Length = 513
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/435 (38%), Positives = 244/435 (56%), Gaps = 13/435 (2%)
Query: 105 SNAGDTKSFFAPADGASFHA--NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG 162
S G A G S A SF EL + L ACE LGY PT IQ IP+AL G
Sbjct: 60 SETGTVAKLVPDAAGPSETAPLKSFKELGVMDSLCEACENLGYKNPTSIQVESIPVALEG 119
Query: 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222
+D+ G A TGSGKTAAFA+P L+ L P + A IL PTRELA Q+ E +
Sbjct: 120 KDLIGLAETGSGKTAAFAIPILQALWDNPTGLFAC---ILAPTRELAFQISEQFEALGGG 176
Query: 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282
+R ++VGG+ Q AL P I+VATPGR++DHL N+ L +L L++DEADR
Sbjct: 177 IGVRSAVIVGGMDMMTQSVALGKKPHILVATPGRLLDHLENTKGFSLRNLKYLVMDEADR 236
Query: 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342
LL++ F + +++++ P+ R+T LFSAT+T V++L + SL+ P+R+S STL
Sbjct: 237 LLDMDFGPILDKILKVIPQTRRTYLFSATMTSKVEKLQRASLSSPVRISVGSKYSTVSTL 296
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
++ + I +++ L+ L ++ IIF T Q RL IL A L+G
Sbjct: 297 IQKFLFIPFK---HKDTYLVYLMNEFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNG 353
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDI-----IGVQTVINYACPRDLTSYVHR 457
++Q+ RL AL F+ + L+ATDVAARGLD+ + V+N+ +D +Y+HR
Sbjct: 354 QMSQSARLGALNKFKSGSRNILVATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHR 413
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
VGRTARAGR G +++ VT + L I G K+ V E+ + +S+ + + + +
Sbjct: 414 VGRTARAGRSGRSISLVTQYEVELFLRIEAALGKKIPEFDVQEEDVLIFSERVGEAQREA 473
Query: 518 AAILQEEREERILRK 532
A L+EERE++ R+
Sbjct: 474 AKQLREEREKKGGRR 488
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 230/404 (56%), Gaps = 8/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L
Sbjct: 26 TFKDLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAETGSGKTGAFALPILN 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL
Sbjct: 86 ALLETPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ ++++L P+ R+T
Sbjct: 143 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 203 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNEL 262
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG ++Q +RL +L F+ + L
Sbjct: 263 AGNSF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 319 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQR 378
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL + E+ + ++ + + + ++E+ E+R
Sbjct: 379 IEHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMREQGEKR 422
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/386 (39%), Positives = 230/386 (59%), Gaps = 12/386 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + + A IR L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 62 -LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L +V + L VL+LDEADR+L++GF +I +++ + P +R
Sbjct: 121 RHGVDVLVATPGRLLD-LEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A + AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLR 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +R++ Q + +S +
Sbjct: 357 DI-----ERLINRVLERQEVEGFSPV 377
>gi|442314863|ref|YP_007356166.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|441483786|gb|AGC40472.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 376
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 225/370 (60%), Gaps = 4/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+
Sbjct: 7 NFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQ 66
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK+ ++R LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL
Sbjct: 67 ILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQ 126
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT
Sbjct: 127 GVDILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 185
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ + + + L P ++ P + T+ + V + + + N +L+++
Sbjct: 186 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINIL 242
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T + +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LI
Sbjct: 243 KDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 302
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I
Sbjct: 303 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNI 362
Query: 486 AKRAGSKLKS 495
K G + +
Sbjct: 363 QKLIGFTMNT 372
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 234/412 (56%), Gaps = 8/412 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+ A + SF +L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT
Sbjct: 19 EAAGEESRSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTG 78
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ LL P+R+ A L+LTPTRELA Q+ E + + ++VGG+
Sbjct: 79 AFALPILQALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHTTVIVGGIDAM 135
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P +++ATPGR++DHL N+ +L L L++DEADR+L + F E+ ++++
Sbjct: 136 SQSLALAKKPHVIIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVN 356
+ P+ R+T LFSAT+T+ V +L + +L P++ + + L + + I + ++
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSY 255
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+L L +F +IF T R +L A LHG ++Q +RL AL F
Sbjct: 256 LVHILNELAGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGALNKF 311
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT
Sbjct: 312 KAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 371
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
D L + I G KL + + E+ + ++ + + + L+E+ E++
Sbjct: 372 YDVELFQRIEHLIGKKLPAFPMQEEEVMMLTERVAEAQRLARMELREQGEKK 423
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 230/404 (56%), Gaps = 8/404 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L
Sbjct: 26 TFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILN 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + + C ++VGG+ + Q AL
Sbjct: 86 ALLDTPQRFFA---LVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ ++++L P+ R+T
Sbjct: 143 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 203 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNEL 262
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG ++Q +RL +L F+ + L
Sbjct: 263 AGNSF----MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 319 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQR 378
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
I G KL + E+ + ++ + + + ++E+ E+R
Sbjct: 379 IEHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMREQGEKR 422
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 243/425 (57%), Gaps = 26/425 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS LL E GY PTPIQA IP+ L D+ G A TG+GKTAAFALP L
Sbjct: 3 TFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILH 62
Query: 186 RLLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+L + IPA RVL+L+PTRELA Q+ + ++ ++ + GG+ Q A
Sbjct: 63 HILSN-RIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKA 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DI+VATPGR+IDH+ ++DL + L+LDEAD++L++GF I ++ P +
Sbjct: 122 LQGGIDILVATPGRLIDHI-EQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ + FSAT+ +++ L LT P ++ P A +T++V+ I + R + A+L
Sbjct: 181 RQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQR---KRALLS 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + ++ +IF+ TK+ A R+ ++AA +HG+ Q+QR AL+ F+ V
Sbjct: 238 ELYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+D+ V VINY P +YVHR+GRTARAG+EG+++T V D++R LL
Sbjct: 298 ALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLL 357
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
K I + + Q I W ++ +DQ +L +E IL + E K +
Sbjct: 358 KDIER----------ITRQRIPSW----DRRKDQALKLL----DEAILASGQTEKPKTPD 399
Query: 543 MIAHK 547
+ K
Sbjct: 400 RVVEK 404
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 217/366 (59%), Gaps = 9/366 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L+ PLLRA +GY+ PTPIQA IP+ LTGRD+ +A TG+GKTA F LP L+
Sbjct: 14 SFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQ 73
Query: 186 RLLYRP--KRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RLL P R P R LILTPTREL QV ++ A++T IR L+ GG+S Q A
Sbjct: 74 RLLDNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQA 133
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR DI+VATPGR++DH++ +VDL + + +LDEADR+L++GF +I ++ P +
Sbjct: 134 LRQPVDILVATPGRLLDHVQQG-TVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAK 192
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ +LFSAT + ++ L L P + P +T +E V + + ++ LL
Sbjct: 193 RQNLLFSATFSPEIRSLAHGLLDNPAEVDVAPR----NTASELVAQSAHLVPKTRKRALL 248
Query: 363 S-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
S L +V++F+ TK A+RL G ++A +HGN +Q R AL F+ +
Sbjct: 249 SYLIGSRRWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSL 308
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARGLDI + V+NY P YVHR+GRT RAG EG AV+ V + L
Sbjct: 309 PVLVATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKL 368
Query: 482 LKAIAK 487
L I +
Sbjct: 369 LTGIER 374
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 215/366 (58%), Gaps = 9/366 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNLS PLLRA + GY P+PIQAA IP L+GRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 186 RLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+R AIR LILTPTRELA+Q+ + ++ +R ++ GG+ Q AL+
Sbjct: 62 RLTANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++A PGR+ D + +DL +L + +LDEADR+L++GF ++ +++ P RQ
Sbjct: 122 KGVDILIACPGRLNDLIGQGF-IDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT+ ++++L L KP + DP + + + + + E + LL
Sbjct: 181 NLMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHV----EKGNKKFLLPW 236
Query: 365 CSKTFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+
Sbjct: 237 LIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKT 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++
Sbjct: 297 KVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEY 356
Query: 482 LKAIAK 487
L I K
Sbjct: 357 LAGIEK 362
>gi|398963567|ref|ZP_10679679.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398149569|gb|EJM38213.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 226/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L+ LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALNERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 220/381 (57%), Gaps = 8/381 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L + L ACE L + P+ IQ IP+AL G DI G A TGSGKT AFA+P L+
Sbjct: 23 SFKSLGVVDVLCEACERLKWKSPSKIQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQ 82
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+LL P+R+ A LILTPTRELA Q+ E + ++C +VVGG+ Q L
Sbjct: 83 KLLDSPQRLYA---LILTPTRELAFQISEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAK 139
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R T
Sbjct: 140 KPHIIIATPGRLIDHLENTKGFNLRALKFLVMDEADRILNMDFEQEVDKILKVIPRERST 199
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T+ V +L + SL P+++ + L + + + + ++V +VL L
Sbjct: 200 YLYSATMTKKVAKLQRASLQNPVKVEVSSKYQTVDKLQQYYLFVPAKFKDVYLVSVLNEL 259
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F+ T R ++ L A LHG ++Q++RL +L F+ + L
Sbjct: 260 AGNSF----MVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSIL 315
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFV+ D L +
Sbjct: 316 IATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELYQR 375
Query: 485 IAKRAGSKLKSRIVAEQSITK 505
I G KL EQ + +
Sbjct: 376 IEHLIGKKLPLYKTEEQEVMQ 396
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 209/357 (58%), Gaps = 6/357 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLL A E + Y PT IQA +P AL GRDI G A TGSGKTAAFALP L+
Sbjct: 24 TFKSLGLIDPLLEALEQMKYKAPTDIQAEALPHALQGRDIIGVASTGSGKTAAFALPILQ 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L PK + A ++ PTRELA Q+ E I +RC ++GG+ + Q+ AL
Sbjct: 84 KLWEDPKGLFAC---VIAPTRELAFQITQQFESIGSAMGVRCATIIGGVDIQSQKIALAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR+++HL + L L L+LDEADRLL++ F + ++++L PK R T
Sbjct: 141 KPHVIVATPGRLLEHLEETKGFSLRSLKFLVLDEADRLLDMDFGPILDKILKLIPKERTT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + SL+ P+R+ + STL + + M ++ L+ L
Sbjct: 201 YLFSATMTTKVAKLQRASLSNPVRVEVNSKYSTVSTLLQYYL---LMPLPQKDVHLIYLA 257
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ + +IIF+ T A RL I+ A LHG L+Q+ RL AL F+ L+
Sbjct: 258 NTLAQNSMIIFTRTVHDAQRLSIMLRSLGFPAIPLHGQLSQSARLGALGKFKAGGRSILV 317
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
ATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++T VT D L+
Sbjct: 318 ATDVASRGLDIPSVDIVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELV 374
>gi|429334948|ref|ZP_19215595.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428760355|gb|EKX82622.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 439
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 228/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A AL + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSDFALHERLLKAVAALNFVEPTPVQAAAIPLALQGRDLRVTAKTGSGKTAAFVLPVLNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ ++ IR LIL PTRELA Q IE+ AQFT I+ ++ GG K Q LR +
Sbjct: 62 LVDLNQKRVEIRALILLPTRELAQQTLKEIERFAQFTFIKSGIITGGEDFKEQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI+V TPGRM++HL N+ ++DL+ + V++LDEADR+L++GF+ ++ L LCP R QT+
Sbjct: 122 PDILVGTPGRMLEHL-NAGNLDLEHVQVVVLDEADRMLDMGFAEDVERLCGLCPNRAQTL 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + ++I L P L + ++ T ++++ + Q A L L
Sbjct: 181 LFSATTGGAGLRDMIGKVLKDPEHLMLNAVSQLNETTRQQIITADHNQHKEQIAQWL-LA 239
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++T+ K IIF+ T+ A R+ +KA LHG+ Q R A+E F+ + L+
Sbjct: 240 NETY-EKAIIFTNTRVMADRIYGHLVAKDVKAFVLHGDKDQKDRKLAIERFKTGNAKVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G AV+ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGADGLAVSLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R++ E
Sbjct: 359 ERYLKQSFERRVIKE 373
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 220/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 73 -LLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 132 RHGVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 190
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L
Sbjct: 191 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQ---KSALLTQ 247
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V
Sbjct: 248 LIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRV 307
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 308 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLN 367
Query: 484 AI 485
I
Sbjct: 368 DI 369
>gi|389696462|ref|ZP_10184104.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388585268|gb|EIM25563.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 505
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 225/366 (61%), Gaps = 12/366 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+L+A A GY KPTPIQA IP A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPILKALSAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPK-RIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L PK R P + RVL+L+PTREL+ Q+ + + + +V GG++ QE AL
Sbjct: 64 LNANPKPRKPKSPRVLVLSPTRELSGQIADSFKAYGRNLRLSTEVVFGGVTISRQEKALA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR+ID L + ++ L D+ +L+LDEAD++L+LGF + +V L PK RQ
Sbjct: 124 QGVDVLVATPGRLID-LVDRRALSLRDIEILVLDEADQMLDLGFIHALKRIVTLLPKDRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-S 363
++ FSAT+ + + L L P ++ P A + + V+ + + N++ VLL +
Sbjct: 183 SLFFSATMPKTISTLADSFLRDPAHVAVTPVATTAERVEQSVIFV----QTNRKQVLLET 238
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHV 421
L +V++F+ TK A K++ GL A + A +HGN +Q QR AL FR
Sbjct: 239 LLRDPSIDRVLVFTRTKHGAD--KVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRDGSC 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV VINY P SYVHR+GRTARAG G A++F D +++
Sbjct: 297 RVLVATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEEKAY 356
Query: 482 LKAIAK 487
LK I K
Sbjct: 357 LKDIEK 362
>gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|423279249|ref|ZP_17258162.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404585418|gb|EKA90034.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
Length = 427
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/409 (37%), Positives = 233/409 (56%), Gaps = 17/409 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L+
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALR
Sbjct: 62 KL-YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRG 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
I+VATPGR++D + V L+ L +LDEADR+L++GF +I +++L P +RQT
Sbjct: 121 GIQILVATPGRLLDLISQGF-VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLL 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LI
Sbjct: 237 KDASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
K G + +V E A QEE++E I KA+
Sbjct: 357 QKLIGKNIP--VVKEHPFVTAE----------GAKAQEEKQEEIKVKAK 393
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/403 (40%), Positives = 230/403 (57%), Gaps = 7/403 (1%)
Query: 93 HEDYKPEDE--DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTP 150
HE +DE DD S++ + D A +F +L L L ACE LGY PT
Sbjct: 11 HEKLVEKDEVSDDASSSEEEVQDRDEKDEADSAPKTFKDLGLIPQLCEACETLGYKAPTA 70
Query: 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210
IQA IPLAL RD+ G A TGSGKTAAFALP L+ L+ +P+ L+L PTRELA
Sbjct: 71 IQAESIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKPQPFFG---LVLAPTRELAY 127
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD 270
Q+ E + +R ++VGG+ Q A+ P I+VATPGR++DHL N+ L
Sbjct: 128 QISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPHIIVATPGRLLDHLENTKGFSLR 187
Query: 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330
L L++DEADRLL++ F I +++++ P+ R+T LFSAT++ V+ L + SL+ PLR+
Sbjct: 188 SLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRV 247
Query: 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390
S S+ + T++ + + +++ L+ L ++ IIF+ T +RL +L
Sbjct: 248 SV--SSNKYQTVSTLLQYYMFIPHKHKDVHLIWLLNEHIGQTTIIFTRTIHETNRLALLT 305
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
A LHG L+Q+ RL ++ FR + LIATDVAARGLDI V V+NY D
Sbjct: 306 RFLGFSAIALHGQLSQSSRLASISKFRSKTRSILIATDVAARGLDIPSVDLVLNYDLAAD 365
Query: 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
++VHR+GRTARAG+ G A++ VT D + I K KL
Sbjct: 366 SKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKALDKKL 408
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 236/371 (63%), Gaps = 5/371 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF++L L++P++RA ++ PT +QA IP L+G+DIC +AITGSGK+ AF +P ++
Sbjct: 8 SFLDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIVQ 67
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+LL + +P + LI++PTRELA Q+ ++ + +A I LV+GG+S + Q L
Sbjct: 68 KLLTF-RGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLTP 126
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
PDI++ TPGR ID + N+ + L+ L +LDEADRLL GF ++++ +V P++ QT
Sbjct: 127 APDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQT 186
Query: 306 MLFSATLTEDVDEL-IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LF+ATL + V +L K+ ++S +P + +T+ ++ ++ E + L++L
Sbjct: 187 LLFTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKK--EERRLPYLVAL 244
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
C K ++F TK AH + +LF + +AELH +L+Q R EA+E FR+ V +L
Sbjct: 245 CRNMCKDKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYL 304
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLLK 483
+A+D+AARG+DI ++ VIN+ P +L Y+HR GRT RAG++G A++ +VT ++ ++K
Sbjct: 305 LASDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMK 364
Query: 484 AIAKRAGSKLK 494
+ K + +++
Sbjct: 365 KMQKNSPGEVQ 375
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 220/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 73 -LLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 132 RHGVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 190
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + ++ A+L
Sbjct: 191 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKA---ALLTQ 247
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V
Sbjct: 248 LIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRV 307
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 308 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLN 367
Query: 484 AI 485
I
Sbjct: 368 DI 369
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/410 (37%), Positives = 235/410 (57%), Gaps = 8/410 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP L+
Sbjct: 26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + + ++VGG+ + Q AL
Sbjct: 86 ALLDAPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 143 KPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + +L P++ + + L + + I + ++ +L L
Sbjct: 203 FLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNEL 262
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +RL +L F+ + L
Sbjct: 263 AGNSF----MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 319 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 378
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
I G KL + + E+ + ++ + + + L+E+ E++ R A+
Sbjct: 379 IEHLIGKKLPAFPMQEEEVMMLTERVAEAQRFARMELREQGEKKRSRNAD 428
>gi|424662680|ref|ZP_18099717.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
gi|404576370|gb|EKA81108.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
Length = 427
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/409 (37%), Positives = 233/409 (56%), Gaps = 17/409 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F LNL P+L+A GY+ PTPIQ IP+ L G+D+ G A TG+GKTAAF++P L+
Sbjct: 2 TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L Y+ I+ L+LTPTRELA+Q+ E ++T ++ ++ GG+ K Q ALR
Sbjct: 62 KL-YKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRG 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
I+VATPGR++D + V L+ L +LDEADR+L++GF +I +++L P +RQT
Sbjct: 121 GIQILVATPGRLLDLISQGF-VSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ +++ L LTKP ++ P++ ++++V + + ++ +L+ L
Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKE---KKDLLIHLL 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
V+IF+ TK A +L + A + A +HGN TQ R AL F+ + LI
Sbjct: 237 KDASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ + VINY P +YVHR+GRT RAG EG A++F + LK I
Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAE 534
K G + +V E A QEE++E I KA+
Sbjct: 357 QKLIGKNIP--VVKEHPFVTAE----------GAKAQEEKQEEIKVKAK 393
>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 479
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 215/363 (59%), Gaps = 6/363 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L++PLL+A GY+ PTPIQA IPL ++GRD+ G A TG+GKTAAFALP L R
Sbjct: 4 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K P R L+L+PTRELA Q+ + + + GG+ Q AL
Sbjct: 64 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ D+VVATPGR++DHL S L+ + + +LDEAD++L+LGF I ++ PK RQ
Sbjct: 124 AGVDVVVATPGRLMDHL-GEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ ++ +L L P +++ PSA + + ++ I R + +L L
Sbjct: 183 NLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQR---KRPLLAEL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F+ TK+ A R+ + ++AA +HG+ TQ QR AL F+ V L
Sbjct: 240 LADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKAL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATD+AARG+D+ V V NY P SYVHR+GRTAR G+EG A++F D++R+LLK
Sbjct: 300 IATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKD 359
Query: 485 IAK 487
I K
Sbjct: 360 IQK 362
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 215/363 (59%), Gaps = 6/363 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L+ P+LRA GY PTPIQA IP L G+D+ G A TG+GKTAAFALP L+R
Sbjct: 4 FSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L R P A RVL+L PTRELA Q+ +F ++R +VVGG++ Q A+
Sbjct: 64 LSKSQTRTPKGACRVLVLAPTRELAAQIGESFRAYGRFLNVRTAVVVGGVAPGPQIKAIT 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+++VATPGR++DH+ +S + L + V++LDEAD +L+LGF I ++++ P+ RQ
Sbjct: 124 PGVEVLVATPGRLLDHV-DSGKLSLKHVEVVVLDEADHMLDLGFLPPIKRIIKMLPRDRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ + +L L+ P+++S P A + + V I R R + +L L
Sbjct: 183 NLFFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQERVEQSVYLIERTR---KRQLLAEL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ ++F+ TK+ A R+ + AA +HGN +Q QR AL F+ ++ L
Sbjct: 240 LDNPAFKRTLVFTRTKRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ V V+N+ P SYVHR+GRTAR G G A+ F + +R LL+
Sbjct: 300 VATDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRD 359
Query: 485 IAK 487
I K
Sbjct: 360 IEK 362
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 232/386 (60%), Gaps = 12/386 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + +R A +R L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 62 -LLSKGQRAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ +L K + P+ +S P +T+ + V + + ++ A+L+
Sbjct: 180 QNLMFSATFSDEIRQLAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQK---SALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQQDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKTGQVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLN 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +R++ + + +S +
Sbjct: 357 DI-----ERLINRVLDREMVEGFSPV 377
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 216/379 (56%), Gaps = 8/379 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L + L ACE L + PT IQ IPLAL G+D+ G A TGSGKT +FALP L+
Sbjct: 26 TFKSLGIVDVLCEACEQLKWKSPTKIQKESIPLALQGKDVIGLAETGSGKTGSFALPILQ 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C +VVGG+ Q L
Sbjct: 86 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGAGIGVKCAVVVGGIDMMTQALTLAK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R T
Sbjct: 143 KPHVVIATPGRLVDHLENTKGFSLKALKYLVMDEADRILNMDFEEEVDKILRVIPRERHT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 203 YLYSATMTKKVQKLQRASLKDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNEL 262
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG + QA+RL AL F+ ++ L
Sbjct: 263 AGNSF----MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALNKFKSKNRSIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 319 IATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 378
Query: 485 IAKRAGSKLKSRIVAEQSI 503
I G KL +E+ +
Sbjct: 379 IEHLIGKKLPLYQTSEEEV 397
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L+ L +ACE L + P+ IQ IP+AL G+DI G A TGSGKT AFALP L
Sbjct: 60 TWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILH 119
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L
Sbjct: 120 ALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK 176
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 177 KPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 236
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 237 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNEL 296
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ L
Sbjct: 297 AGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 352
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T VT D L +
Sbjct: 353 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQR 412
Query: 485 IAKRAGSKL 493
I + G +L
Sbjct: 413 IEQLLGKQL 421
>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus marinus MC-1]
gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus marinus MC-1]
Length = 439
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 224/363 (61%), Gaps = 6/363 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F LNL +PLL A GY+ PTPIQA IP L GRD+ G A TG+GKTAAFALP L +
Sbjct: 4 FASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNK 63
Query: 187 L-LYRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L + + P A R LILTPTRELA Q+ + I + +V GG+ + Q AL
Sbjct: 64 LSQIKGRPAPNAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRALS 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L V LD + V +LDEADR+L++GF +I ++++ P +R
Sbjct: 124 RGVDILVATPGRLLD-LMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRH 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LFSAT+ +D+ EL + LT P ++ P + +T++V+ + + N+ ++L ++
Sbjct: 183 TLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQ---NKRSLLKNV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A+R+ + +A +HGN +Q+ R +AL+ FRK + L
Sbjct: 240 LEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ G+ VIN+ P + SYVHR+GRTARAGR+G A++F +R L
Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359
Query: 485 IAK 487
I K
Sbjct: 360 IEK 362
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L CE L + PT IQ IP+AL G+DI G A TGSGKT AFA+P L+
Sbjct: 20 TFKDLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQ 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ IE + ++C ++VGG+ Q L
Sbjct: 80 ALLENPQRYFA---LILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ L +L VL++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 137 KPHIIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+R+ + L + + I + ++V +L +
Sbjct: 197 FLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEM 256
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R+ +L L A LHG +TQ +RL +L F+ + L
Sbjct: 257 AGNSF----MVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSIL 312
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDV++RGLDI V VIN+ P Y+HRVGRTARAGR G A+T VT D L +
Sbjct: 313 ISTDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQR 372
Query: 485 IAKRAGSKL 493
I + KL
Sbjct: 373 IEQLISKKL 381
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 220/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + ++ A +R L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 62 -LLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V + L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQ---KSALLTQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLN 356
Query: 484 AI 485
I
Sbjct: 357 DI 358
>gi|417950107|ref|ZP_12593235.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342807185|gb|EGU42381.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 551
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 208/350 (59%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 LLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSSVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + R + +L L
Sbjct: 181 NLLFSATFSDDIRNLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKR---KSPMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + AA +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P Y HR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYAHRIGRTGRAGEVGKAISLV 347
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 221/378 (58%), Gaps = 6/378 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL ++ L AC+ LG+ KPT IQ IP+AL GRD+ G A TGSGKT AFA+P L+
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +R+ L+LTPTRELA Q+ + + ++ ++VGG+ Q L
Sbjct: 140 SLLACAQRL---HTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAK 196
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V+ATPGR+IDH+ N+ +L L L++DEADR+L + F +E+ +++++ P+ R+T
Sbjct: 197 KPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRT 256
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ S L + + I ++ L+S+
Sbjct: 257 FLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKY---KDCYLVSIL 313
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + ++F GT R+ +L + A LHG ++Q +RL AL F+ + L+
Sbjct: 314 NELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 373
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I
Sbjct: 374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
Query: 486 AKRAGSKLKSRIVAEQSI 503
G KL + E+ +
Sbjct: 434 EALIGKKLPAFPTQEEEV 451
>gi|429210560|ref|ZP_19201727.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428159334|gb|EKX05880.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 664
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 216/370 (58%), Gaps = 17/370 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLLYRPKRIP---------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
RL P+ P RVL+LTPTRELA QVH + A+ ++ + GG+
Sbjct: 62 RLF--PEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGM 119
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q A+ D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ +++
Sbjct: 120 NPQVQAMSKGVDVLVACPGRLLD-LIGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVL 178
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREV 355
P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 179 AKLPPKRQNLLFSATFSKDITDLANKLLHNPERIEVTP----PNTTVERIEQRVFRIPSA 234
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 235 QKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLSKHGLPAAAIHGNKSQNARTKALAD 294
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 295 FKTNDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVA 354
Query: 476 DNDRSLLKAI 485
++ LLKAI
Sbjct: 355 PDEEKLLKAI 364
>gi|398978205|ref|ZP_10687628.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398137316|gb|EJM26378.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 446
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 225/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 229/385 (59%), Gaps = 10/385 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K ++ IR L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 62 LLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L +V + L VL+LDEADR+L++GF +I +++ + P +RQ
Sbjct: 122 HGVDVLVATPGRLLD-LEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+ L
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +R++ Q + +S +
Sbjct: 358 I-----ERLINRVLERQEVEGFSPV 377
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/416 (37%), Positives = 232/416 (55%), Gaps = 20/416 (4%)
Query: 80 IVDNDHSD-SEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLR 138
+ DND+ + +E Q+ +Y P D + D A ++ +L L+ L +
Sbjct: 33 VADNDNEEENEVAQNGEYDPSKGSDRED-----------DTAEDQKLTWKDLGLNETLCQ 81
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL P+R A
Sbjct: 82 ACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFA-- 139
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P I++ATPGR++
Sbjct: 140 -LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 198
Query: 259 DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+ V +
Sbjct: 199 DHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKK 258
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFS 377
L + SL P+++ + L + + I + ++V +L L +F +IF
Sbjct: 259 LQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSF----MIFC 314
Query: 378 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437
T + ++ L A LHG ++Q +RL AL F+ ++ LI+TDVA+RGLDI
Sbjct: 315 STCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIP 374
Query: 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
V V+N+ P Y+HRVGRTARAGR G A+T VT D L + I G +L
Sbjct: 375 HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEHLLGKQL 430
>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
F0204]
Length = 459
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 213/362 (58%), Gaps = 6/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L P+L A Y P+PIQ IP+ L G+DI A TG+GKTAAFALP L
Sbjct: 2 NFTDLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILN 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L Y+ K IR L+LTPTRELAVQ+ +K ++ +R C V GG + Q ALRS
Sbjct: 62 KLEYKKKH--QIRALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALRS 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR+ D + + L D+ V +LDEADR+L++GF ++ + P+ RQT
Sbjct: 120 GCDILIATPGRLNDFMVQG-EIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT+ +++ EL L P+ + P A T+T+ +V + +++ +L +
Sbjct: 179 VMFSATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLVYCEK---ADKKRLLKDML 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+K I+F+ TK A RL +K +HG+ TQ QR AL+ FR VD L+
Sbjct: 236 VSPEVTKAIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARG+DI G+ V NY P + SY+HR+GR RAG+EG +++ + LL +I
Sbjct: 296 ATDVAARGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLASI 355
Query: 486 AK 487
K
Sbjct: 356 EK 357
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 215/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L A GY P+PIQA IP + G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLE 61
Query: 186 RLLYRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+ P +R L+LTPTRELA QV + A+ + +V GG+ Q LR
Sbjct: 62 RLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L VL+LDEADR+L++GF +I +L+ + PK+RQ
Sbjct: 122 QGADVLVATPGRLLD-LYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S P T+ + + + + R+ N +L L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKAN---LLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++F+ TK A+RL +KAA +HGN +Q R +AL F+ + L
Sbjct: 238 LKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ L A
Sbjct: 298 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|407452329|ref|YP_006724054.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313313|gb|AFR36154.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 371
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 223/365 (61%), Gaps = 4/365 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L+LS P+L+A GY+ PT IQ IP L GRD+ G A TG+GKTAAF++P L+
Sbjct: 2 NFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK+ +IR LILTPTRELA+Q+ IE+ ++F +I+ + GG+ QE AL
Sbjct: 62 ILSETPKKGKSIRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQ 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR++D ++ + + L + +L+LDEADR+L++GF ++ +++ PK+RQT
Sbjct: 122 GVDILIATPGRLLDLMQQGL-LSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT+ + + + L P ++ P + T+ + V + + + N +L+++
Sbjct: 181 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTN---LLINIL 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T + +IF+ TK A RL G + AA +HGN +Q R +AL+ F+ + LI
Sbjct: 238 KDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A++F +R LK I
Sbjct: 298 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGAEERKDLKNI 357
Query: 486 AKRAG 490
+ G
Sbjct: 358 QRLIG 362
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 222/368 (60%), Gaps = 13/368 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++R
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV ++ ++FT +R +V GG+ Q
Sbjct: 78 LLAHASHSASPARHP-VRALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQT 136
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L P
Sbjct: 137 ATLRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEA 359
K+RQ +LFSAT + ++ +L P+ + R + E V + I ++ E +
Sbjct: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEV----ARSNATAENVSQTIYKVEEAAKAD 251
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+ + + +VI+FS TK A RL +KA+ +HG+ TQ++R+ ALE F++
Sbjct: 252 AVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALESFKQG 311
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D
Sbjct: 312 QIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDE 371
Query: 480 SLLKAIAK 487
LL I K
Sbjct: 372 RLLVDIEK 379
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 225/375 (60%), Gaps = 11/375 (2%)
Query: 113 FFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITG 172
F AP D + SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG
Sbjct: 15 FKAPRD----QSMSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTG 70
Query: 173 SGKTAAFALPTLERLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
+GKTA F LP LE LL R R A +R L+LTPTRELA QV +E + +R +V
Sbjct: 71 TGKTAGFTLPLLE-LLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVV 129
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GG+ Q + L DI+VATPGR++D L N +++ + L VLILDEADR+L++GF
Sbjct: 130 FGGVGIGPQISKLGKGVDILVATPGRLLD-LFNQRALNFNQLEVLILDEADRMLDMGFIH 188
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350
+I +++++ P +RQ ++FSAT ++D+ +L K + P+ +S P T+ + + ++
Sbjct: 189 DIKKILKVLPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVD 248
Query: 351 RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+ ++ A L+ L + +V++FS TK A+R+ L AA +HGN +Q R
Sbjct: 249 QKQKT---AALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGART 305
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
+AL F+ V L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG +G A
Sbjct: 306 KALANFKSGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQA 365
Query: 471 VTFVTDNDRSLLKAI 485
V+ V+ ++ LL+ I
Sbjct: 366 VSLVSGDESKLLRDI 380
>gi|424921971|ref|ZP_18345332.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404303131|gb|EJZ57093.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 225/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/393 (38%), Positives = 225/393 (57%), Gaps = 21/393 (5%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F + L +L+A LG+ + TPIQA IP+AL+GRD+ G A TG+GKTAAF LP +
Sbjct: 2 NTFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLI 61
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
++ PK I L++TPTRELA+QV I K+++F R + GG Q AL+
Sbjct: 62 NKI---PKEEDRIVALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALK 118
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I++ TPGR++DH+ N ++ LDD+ ++LDEAD +L++GF +I +++L P+ RQ
Sbjct: 119 KKPQIIIGTPGRLLDHI-NRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQ 177
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
TMLFSAT+ ++ +L + L P +S P + + + + ++ + LL +
Sbjct: 178 TMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLDM 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S I+F TK+ L A LHG+L+Q QR + FR +D L
Sbjct: 238 ESPELA---IVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVL 294
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLD+ GV V+N+ P+D SYVHR+GRT RAG+EG A +FVT + L+
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRF 354
Query: 485 IAKRAGSKL--------------KSRIVAEQSI 503
I + K+ K RI+AE+ I
Sbjct: 355 IERITRHKIARKPLPSIAEAIEGKQRIIAERLI 387
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 215/361 (59%), Gaps = 8/361 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L LL+A E + + PT IQ IP AL G+DI G A TGSGKTAAFALP L+
Sbjct: 16 TFKSLGLIDSLLQALEQVNHKVPTDIQTEVIPHALEGKDIIGVASTGSGKTAAFALPILQ 75
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L PK + A +L PTRELA Q+ E + +RC ++VGG+ T Q AL
Sbjct: 76 KLWEEPKGLFAC---VLAPTRELAYQISQQFESLGSDMGVRCAVIVGGVPTVPQAVALAK 132
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VVATPGR++ HL+ + L +L L+LDEADRLL++ F I +++++ PK+R T
Sbjct: 133 KPHVVVATPGRLLWHLQETKGFGLANLKFLVLDEADRLLDMDFGQVIDDILKVIPKQRTT 192
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T V +L + SL P+R+ + STL + + I + ++VN L+ L
Sbjct: 193 YLFSATMTSKVAKLQRASLKNPVRVEVAGKYQTVSTLLQYYLFIPLKDKDVN----LVYL 248
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + +IIF+ T A RL I+ A LHG L+Q+QRL AL F+ L
Sbjct: 249 VNALAQNSIIIFTRTVHDAARLTIVLRTLGFSAVPLHGQLSQSQRLGALAKFKSGGRKIL 308
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++T VT D L++
Sbjct: 309 VATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELVQR 368
Query: 485 I 485
I
Sbjct: 369 I 369
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/380 (40%), Positives = 221/380 (58%), Gaps = 10/380 (2%)
Query: 117 ADGASFHAN--SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSG 174
AD +AN ++ +L + L +ACE L + PT IQ IPL L G+DI G A TGSG
Sbjct: 8 ADVEEENANEMTWKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQGKDIIGLAETGSG 67
Query: 175 KTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
KTAAFALP L+ LL P+R A LILTPTRELA Q+ E + ++C ++VGG+
Sbjct: 68 KTAAFALPILQALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGM 124
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHE 294
Q L P I++ATPGR+IDHL N+ +L L L++DEADR+L + F E+ +
Sbjct: 125 DMMSQALILAKKPHILIATPGRLIDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDK 184
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR 353
++R+ P+ R+T+LFSAT+T+ V +L + SL P+++ + L + + I + +
Sbjct: 185 ILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFK 244
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+V +L L +F +IF T R +L A LHG ++Q +R+ AL
Sbjct: 245 DVYLVHILNELAGNSF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAAL 300
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
F+ ++ LI+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TF
Sbjct: 301 TKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITF 360
Query: 474 VTDNDRSLLKAIAKRAGSKL 493
VT D L + I + +L
Sbjct: 361 VTQYDVELYQRIEQLISKQL 380
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 229/380 (60%), Gaps = 12/380 (3%)
Query: 110 TKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
T+S + A A A +F + L LL++ GY+ PTPIQA IP+ + GRD+ G+A
Sbjct: 2 TESTQSVAPTADAPAPTFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAA 61
Query: 170 ITGSGKTAAFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
TG+GKTAAF +P L RL+ P R P +R LILTPTRELA QV +++ ++ T
Sbjct: 62 QTGTGKTAAFTVPILHRLMPLANASASPARHP-VRALILTPTRELADQVFESVKRYSKQT 120
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
+R +V GG+ Q+ ALR +I+VATPGR++DH+ +V+L + +L+LDEADR+
Sbjct: 121 PLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQK-NVNLSQVGILVLDEADRM 179
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
L++GF ++ ++RL P +RQ +LFSAT + ++ +L + L +P+ + A R +T T
Sbjct: 180 LDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNQPVEIEV---AARNATAT 236
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+M + A ++ L +VI+FS TK RL +KA +HG+
Sbjct: 237 TITQIAYKMSSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGD 296
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
TQA R++ALE F+ ++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT R
Sbjct: 297 KTQADRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 356
Query: 464 AGREGYAVT-FVTDNDRSLL 482
AG G A+ F D +R LL
Sbjct: 357 AGASGEAIALFTPDEERFLL 376
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 14/373 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS LLRA E GY + TPIQ IPL L G+D+ A TG+GKTA F LP L+R
Sbjct: 3 FKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQR 62
Query: 187 LLYR----PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L KR P RVL+LTPTRELA QVH + +F R ++ GG+S Q+
Sbjct: 63 LQSSHAEGQKRHP--RVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L D+VVATPGR++DHL+ S+DL + VL+LDEADR+L++GF +I +++ PK+
Sbjct: 121 LIKGVDVVVATPGRLLDHLQQR-SIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKK 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI--RRMREVNQEAV 360
RQT+LFSAT ++++ L L +P + P +++ V + +R RE+ + +
Sbjct: 180 RQTLLFSATFSKEIKSLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKI 239
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ +V++F+ TK A++L G + +A +HGN +Q R +AL F++
Sbjct: 240 -----GEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGS 294
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
V L+ATD+AARG+DI + V+N+ P YVHR+GRTARAG+EG+AV+ V ++
Sbjct: 295 VRVLVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELK 354
Query: 481 LLKAIAKRAGSKL 493
LL I K G+ +
Sbjct: 355 LLSDIEKLLGTSI 367
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/364 (42%), Positives = 215/364 (59%), Gaps = 8/364 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L+ PLLRA GY+ PTPIQ IPL + GRD+ +A TG+GKTA F LP L
Sbjct: 7 FAGLGLAEPLLRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPILHT 66
Query: 187 LLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LL RP IPA RVL+LTPTRELA QV + + +R ++ GG+ Q AL+
Sbjct: 67 LLNRPASIPAGRPRVLVLTPTRELAAQVEESVRTYGRHAKMRSMVMFGGVGMNPQLQALK 126
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++DH+ S+DL + + +LDEADR+L++GF +I +++ + PK RQ
Sbjct: 127 QRVDILVATPGRLLDHV-GEKSLDLSGVEIFVLDEADRMLDMGFIRDIRKVIAVLPKVRQ 185
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 363
T+L+SAT + ++ EL L P + P +T E V + M E Q+ LL+
Sbjct: 186 TLLYSATFSPEIRELAHGLLNDPAEVEVAPR----NTTAERVAQEVYMVEQKQKRHLLAH 241
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ S+V++F+ TK A+RL + AA +HGN +Q R AL F+ +
Sbjct: 242 LINQGAWSQVLVFTRTKHGANRLAEQLDKQGITAAAIHGNKSQNARTRALADFKSNTLRV 301
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ V + LL
Sbjct: 302 LVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGASGAAISLVDREEAKLLT 361
Query: 484 AIAK 487
AI K
Sbjct: 362 AIEK 365
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 219/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A + GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL R R A +R L+LTPTRELA QV +E ++ ++ ++ GG+ Q + L
Sbjct: 62 -LLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N +V+ + L VLILDEADR+L++GF +I +++R+ P +R
Sbjct: 121 GKGVDILVATPGRLLD-LYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + P+ +S P R +T I + + + A L+
Sbjct: 180 QNLMFSATFSDDIRKLAKGLVNNPVEISVTP---RNATAKSVEQYIYMVDQKQKTAALIH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+R+ L AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+
Sbjct: 297 LVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLR 356
Query: 484 AI 485
I
Sbjct: 357 DI 358
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 229/380 (60%), Gaps = 12/380 (3%)
Query: 110 TKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
T+S + A A A +F + L LL++ GY+ PTPIQA IP+ + GRD+ G+A
Sbjct: 2 TESTQSVAPTADAPAPTFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAA 61
Query: 170 ITGSGKTAAFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223
TG+GKTAAF LP L RL+ P R P +R LILTPTRELA QV+ +++ ++ T
Sbjct: 62 QTGTGKTAAFTLPILHRLMPLANASASPARHP-VRALILTPTRELADQVYESVKRYSKQT 120
Query: 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283
+R +V GG+ Q+ ALR +++VATPGR++DH+ +V+L + +L+LDEADR+
Sbjct: 121 PLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRM 179
Query: 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
L++GF ++ ++RL P +RQ +LFSAT + ++ +L + L P+ + A R +T T
Sbjct: 180 LDMGFLPDLERIIRLLPTQRQGLLFSATFSNEIRKLGRSYLNHPVEIEV---AARNATAT 236
Query: 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+M + A ++ L +VI+FS TK RL +KA +HG+
Sbjct: 237 TITQIAYKMSGDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGD 296
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
TQA R++ALE F+ ++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT R
Sbjct: 297 KTQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 356
Query: 464 AGREGYAVT-FVTDNDRSLL 482
AG G A+ F D +R LL
Sbjct: 357 AGASGEAIALFTPDEERFLL 376
>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
Length = 419
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 235/372 (63%), Gaps = 7/372 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS PLL+A GY+ P+PIQA IP L G+D+ SA TG+GKTA F+LP L
Sbjct: 2 TFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLH 61
Query: 186 RLLYRP-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ +P +R ++ LI+TPTRELA Q+ I+ + FTD+R ++ GG++ Q AL+
Sbjct: 62 IITKQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L + ++ + L+LDEADR+L++GF +I++++ + P +RQ
Sbjct: 122 QGTDILVATPGRLLD-LHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEAVLLS 363
+LFSAT ++++ +L + LT P+ + A +R ++ E+V + I + + + +++
Sbjct: 181 NLLFSATFSKEIKKLAQSFLTNPVLVEA----QRENSTAEKVKQTIYKTNKSAKTNLVIK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ +V+IF+ TK A+RL G A +K+A +HGN +Q R +AL F+ +
Sbjct: 237 LITEGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + VINY P YVHR+GRTARAG G A++ V+ ++ +K
Sbjct: 297 LVATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVK 356
Query: 484 AIAKRAGSKLKS 495
I K G KL S
Sbjct: 357 GIEKLLGEKLNS 368
>gi|312070907|ref|XP_003138363.1| hypothetical protein LOAG_02778 [Loa loa]
Length = 463
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 207/329 (62%), Gaps = 7/329 (2%)
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292
GL K QE ALR PDIV+ATPGR+IDHL N+ + L ++ +L+LDEADR+L+ F+ ++
Sbjct: 28 GLDLKTQEAALRQRPDIVIATPGRLIDHLHNAPNFSLVNVEILVLDEADRMLDEAFADQM 87
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352
E++ LC + RQTMLFSAT+T+ V+EL +SL P++L + + L +E VRIR
Sbjct: 88 KEIIHLCAQNRQTMLFSATMTDQVEELAAVSLKNPVKLFITGNTETALNLRQEFVRIRES 147
Query: 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
E ++E ++ L ++ F IIF TK+ RL I+ GL +K +LH LTQ QR+EA
Sbjct: 148 HETDRECIVAGLVTRNFPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSGLTQRQRVEA 207
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+K +D L++TD+AARGLD+ GV+TVIN P L YVHRVGRTARAGR G +++
Sbjct: 208 LFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTARAGRVGRSIS 267
Query: 473 FVTDNDRSLLKAI--AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERIL 530
V +++R +LK I + + G LK R+++ + + IE +E+ + I QEE ER L
Sbjct: 268 LVGESERKILKEIIASNKGGGCLKQRLISANVVEAYKNRIESLEESIERIRQEEEVERTL 327
Query: 531 RKAEMEATKAENMIAHKEEIFARPKRTWF 559
R A+ E + + + E KR W
Sbjct: 328 RLAQEELQRGKTKLEGNVE-----KRCWI 351
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 218/367 (59%), Gaps = 6/367 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L R + +A GY+KPTPIQ IPL L D+ G A TG+GKTAAFALP +
Sbjct: 7 TFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIH 66
Query: 186 RLL-YRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ R K P R L+L PTRELA+QVH ++T IR ++ GG+ Q A+
Sbjct: 67 NLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAI 126
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
S D+++ATPGR++D L N V L +L + +LDEADR+L++GF +I +++ PKRR
Sbjct: 127 ASGLDVLIATPGRLVD-LMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRR 185
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q + FSAT+ ++++L L +P+R+ P + +++ V+ + N +LL
Sbjct: 186 QNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKN---LLLH 242
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K IIF+ TK A+++ L + +K +HGN +Q+ R ALE FR
Sbjct: 243 LFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + VINY P +YVHR+GRTARAG+ G A+ ++RSL+K
Sbjct: 303 LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIK 362
Query: 484 AIAKRAG 490
I K G
Sbjct: 363 DIEKVIG 369
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 217/379 (57%), Gaps = 8/379 (2%)
Query: 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSG 174
AP S + +F L L PLL A + +GYSKPT IQA IP AL G+D+ G A TGSG
Sbjct: 86 APVAPKSSASATFDSLGLISPLLEALKQVGYSKPTEIQAGIIPHALEGKDVIGVAETGSG 145
Query: 175 KTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
KTAAFALP L++L P+ + +L PTRELA Q+ E + +RC +VGG+
Sbjct: 146 KTAAFALPILQKLWDEPR---GLFACVLAPTRELAYQIAQQFEALGSAIGVRCATIVGGM 202
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHE 294
Q AL P I+VATPGR+ DHL N+ L L L+LDEADRLL++ F I +
Sbjct: 203 DMMSQSIAL-GKPHIIVATPGRLNDHLENTKGFSLRGLRYLVLDEADRLLDMDFGPVIDK 261
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE 354
++++ P+ R T LFSAT++ V +L + SL P+R+ + STL + +
Sbjct: 262 ILKVLPRERNTFLFSATMSTKVAKLQRASLQNPVRVEVNGKYSTVSTLLQYYLLTPF--- 318
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
N++ L+ L ++ + +IIF+ T A RL ++ A LHG L+Q+ RL AL
Sbjct: 319 ANKDVHLVHLANELAANSIIIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGALN 378
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ LIATDVA+ GLDI V VIN+ P Y+HRVGRTARAGR G ++T V
Sbjct: 379 KFKAGGRSLLIATDVAS-GLDIPTVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLV 437
Query: 475 TDNDRSLLKAIAKRAGSKL 493
T D LL+ I G K+
Sbjct: 438 TQYDVELLQRIEGVIGKKM 456
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS +L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + + PA +R L+LTPTRELA Q+ +E QF ++ ++ GG+ Q T L
Sbjct: 62 -LLSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N +V L VL+LDEADR+L++GF +I +++ + P +R
Sbjct: 121 NRGVDILVATPGRLLD-LYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + P+ +S P +T+ + + + ++V AVL+
Sbjct: 180 QNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKV---AVLIE 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL + AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G+AV+ V+ + LL+
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLR 356
Query: 484 AI 485
I
Sbjct: 357 DI 358
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 229/379 (60%), Gaps = 15/379 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL- 184
+F L LS LL+A + GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L
Sbjct: 2 TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61
Query: 185 -----ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
+ L +RP +R LILTPTRELA Q+ + +++ ++F D+R ++ GG++ K Q
Sbjct: 62 LLSEQKALRHRP-----VRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQ 116
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
L+ D++VATPGR++D L N + LD + + +LDEADR+L++GF +I +++L
Sbjct: 117 IANLKRGMDVLVATPGRLLD-LHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLI 175
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ ++FSAT ++D+ +L L P+++ A P + ++V R+ + ++
Sbjct: 176 PAKRQNLMFSATFSKDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKT---G 232
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+++ L S +V++F+ TK A+ L + AA +HGN +Q R +AL+ F+K
Sbjct: 233 LIIKLISDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKG 292
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ L+ATD+AARGLDI + VINY P YVHR+GRT RAG G AV+ V+ ++
Sbjct: 293 TLRVLVATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADET 352
Query: 480 SLLKAIAKRAGSKLKSRIV 498
+ LK I K G ++ IV
Sbjct: 353 TYLKDIQKLIGMQIPVEIV 371
>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 506
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 217/358 (60%), Gaps = 6/358 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 64 LSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + ++ LD + +L+LDEAD++L+LGF + +V++ P RRQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L LT P++++ P A + ++V+ ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ A + A +HGN +Q QR AL FR L
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
+ATD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L
Sbjct: 300 VATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYL 357
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 219/367 (59%), Gaps = 11/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV ++ ++FT +R +V GG+ Q
Sbjct: 78 LLAHASTSASPARHP-VRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQT 136
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L P
Sbjct: 137 ATLRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ ++FSAT + ++ +L P+ + S +T+ + R+ +AV
Sbjct: 196 KKRQNLMFSATFSPEIKKLAGSFQNNPVTIEVARSNATAERVTQTIYRVDE--SAKADAV 253
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + +VI+FS TK A RL +KA+ +HG+ TQ +R+ ALE F++
Sbjct: 254 SFIIRERNL-KQVIVFSNTKIGASRLSRQLENEGVKASAIHGDKTQNERMAALEAFKQGQ 312
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
++ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D
Sbjct: 313 IEVLVATDVAARGLDITDLPCVINYDMPYNAEDYVHRIGRTGRAGASGDAISLFCDKDER 372
Query: 481 LLKAIAK 487
LL I K
Sbjct: 373 LLTDIEK 379
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 228/381 (59%), Gaps = 16/381 (4%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
D+ S AP S A +F + L LL++ GY+ PTPIQA IP+ GRD+ G+
Sbjct: 3 DSTSSAAP----SAEALTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGA 58
Query: 169 AITGSGKTAAFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222
A TG+GKTAAF LP L RL+ P R P +R LILTPTRELA QV+ +++ +
Sbjct: 59 AQTGTGKTAAFTLPILHRLMPLANSSASPARHP-VRALILTPTRELADQVYENVKRYSLH 117
Query: 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282
T +R +V GG+ Q+ ALR +++VATPGR++DH+ +V+L + +L+LDEADR
Sbjct: 118 TPLRSAVVFGGVDIGPQKEALRQGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADR 176
Query: 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342
+L++GF ++ ++RL P +RQ +LFSAT + ++ +L + L +P+ + T+
Sbjct: 177 MLDMGFLPDLERIIRLLPPQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTV 236
Query: 343 TEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
T+ + M + A ++ L +VI+FS TK RL L +KA +HG
Sbjct: 237 TQIAYQ---MTGEAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLELDGVKAESIHG 293
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462
+ +QA R++ALE F+ ++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT
Sbjct: 294 DKSQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTG 353
Query: 463 RAGREGYAVT-FVTDNDRSLL 482
RAG G A+ F + +R LL
Sbjct: 354 RAGASGEAIALFTPEEERYLL 374
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 12/389 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 72
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 73 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 132 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 190
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 191 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 247
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 248 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 307
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 308 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 367
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
I +L +R++ + + ++ ++ +
Sbjct: 368 DI-----ERLINRVLDREMVEGFNHVLPE 391
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 222/365 (60%), Gaps = 12/365 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L LLRA +A GY+ PTPIQ IP ALTGRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 186 RLLYRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
RL + PA +R L+LTPTRELA QV + + +R ++ GG+ Q
Sbjct: 62 RL---SAKAPAGGARPVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHAVIFGGVGQNPQV 118
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALR+ D++VATPGR++D + V L L V +LDEADR+L++GF ++ +++ P
Sbjct: 119 QALRNGVDVLVATPGRLLDLMEQGF-VSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALP 177
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+RQT+ FSATL D+ +L + LT P+R+ P++ T++++V + R + + +
Sbjct: 178 PKRQTLFFSATLPPDIVDLARSILTDPIRVEVSPASSTAETVSQQVYFVEREQ---KRGL 234
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L L + S+ ++F+ TK A+R+ A + +A +HGN +Q R AL+ FR
Sbjct: 235 LTHLLKEGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGT 294
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATD+AARG+DI G+ V+NY P YVHR+GRT RAG G AV+F +R+
Sbjct: 295 LRVLVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERA 354
Query: 481 LLKAI 485
L+ I
Sbjct: 355 YLRDI 359
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 215/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F L LS P+L+A EA GYS P+PIQ IP + G+D+ +A TG+GKTA F LP LE
Sbjct: 2 GFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL K + +R LILTPTRELA QVH +EK + + +V GG+ Q LR
Sbjct: 62 RLSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ
Sbjct: 122 KGVDVLVATPGRLLD-LANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S T+ + V + + ++ VL L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKAR---VLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + +A +HGN +Q R +AL F+ V L
Sbjct: 238 IKDNDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN P+ YVHR+GRT RAG G A++FV++++ S L A
Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFA 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 218/377 (57%), Gaps = 5/377 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG +F +L + L AC++L + +PT IQ IP+AL G+DI G A TGSGKTA
Sbjct: 67 DGDEAAEKTFADLGVREELCDACDSLNFKRPTAIQREAIPIALEGKDIIGLAETGSGKTA 126
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ LL +P+ + LIL PTRELA Q+ E + +RC ++VGG+
Sbjct: 127 AFALPILQALLDKPQPLFG---LILAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMV 183
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P IVVATPGR++DH+ N+ + L++DEADRLL+L F + ++++
Sbjct: 184 PQAVALAKKPHIVVATPGRLLDHMENTKGFSVKHFKYLVMDEADRLLDLDFGPILDKILQ 243
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357
+ R+TMLFSAT++ ++ L + +L P+R+S S+ + T+ + R + +
Sbjct: 244 ELNRDRRTMLFSATMSTKLNSLTRAALQNPVRVSISESSYQ--TVKNLMQRYMFIPHKYK 301
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+ L+ L + IIF+ T R+ + A LHG + Q+ RL AL FR
Sbjct: 302 DIYLVYLLDEFAGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALNKFR 361
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
D L+ATDVAARGLDI V V+N+ P D +YVHRVGRTARAG+ G A++ VT
Sbjct: 362 GGSRDILVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQY 421
Query: 478 DRSLLKAIAKRAGSKLK 494
D + + I K G KL+
Sbjct: 422 DIEIYQRIEKALGKKLE 438
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 211/369 (57%), Gaps = 6/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PL +ACE+L + PTPIQ IP AL +DI G A TGSGKTAAFALP L+
Sbjct: 60 TFASLGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQ 119
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P A +L PTRELA Q+ + + ++ ++VGG+ Q AL
Sbjct: 120 SLWDSPS---AFFACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSK 176
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR+ DHL ++ L +L LI+DEADRLL++ F I +++++ PK R+T
Sbjct: 177 RPHVIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKT 236
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + SL P+++ S L + + + +++ L+ L
Sbjct: 237 YLFSATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYLFLPFK---HKDTYLVYLA 293
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T A RL ++ A LHG L+Q+ RL AL F+ L+
Sbjct: 294 NELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLV 353
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VIN+ P + Y+HRVGRTARAGR G ++T VT D LL+ I
Sbjct: 354 ATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRI 413
Query: 486 AKRAGSKLK 494
G K+
Sbjct: 414 EGVIGKKMN 422
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 72
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 73 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 132 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 190
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 191 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 247
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 248 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 307
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 308 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 367
Query: 484 AI 485
I
Sbjct: 368 DI 369
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 12/389 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 62 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
I +L +R++ + + ++ ++ +
Sbjct: 357 DI-----ERLINRVLDREMVEGFNHVLPE 380
>gi|398985369|ref|ZP_10691023.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399014054|ref|ZP_10716350.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398111891|gb|EJM01765.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398154210|gb|EJM42690.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 446
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 225/375 (60%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + ++I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLRDMIGKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 72
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 73 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 132 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 190
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 191 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 247
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 248 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 307
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 308 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 367
Query: 484 AI 485
I
Sbjct: 368 DI 369
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 219/367 (59%), Gaps = 11/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++R
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV + +FT +R +V GG+ Q
Sbjct: 78 LLQHASHSASPARHP-VRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQT 136
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L P
Sbjct: 137 AILRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ +LFSAT + ++ +L P+ + S +T+ + ++ E +
Sbjct: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVE---EAAKADA 252
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + + +VI+FS TK A RL +KA+ +HG+ TQ++R+ ALE F++
Sbjct: 253 VSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQ 312
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
++ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D
Sbjct: 313 IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDR 372
Query: 481 LLKAIAK 487
LL I K
Sbjct: 373 LLTDIEK 379
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 12/389 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 62 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
I +L +R++ + + ++ ++ +
Sbjct: 357 DI-----ERLINRVLDREMVEGFNHVLPE 380
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 216/359 (60%), Gaps = 7/359 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELNLS +L+A + +G+ + +PIQAA IPL + G+DI G A TG+GKTAAF +P +E+
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ +R + I I I+ PTRELA+QV + +I Q++ + V GG Q AL++
Sbjct: 64 IDHRSRNIQGI---IIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALKNH 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+V TPGR++DH+ ++ LD + L+LDEAD +L +GF +I ++ PK RQTM
Sbjct: 121 PQIIVGTPGRILDHIHRG-TLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTM 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + ++ + + P + ++ + ++++ + + + LL + S
Sbjct: 180 LFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYIKVQEREKFDVLSRLLDVQS 239
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
I+F TK+ L L A +HG+L+QA+RL L F+ +D L+A
Sbjct: 240 PDL---AIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVA 296
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI GV V NY P+D SYVHR+GRT RAGREG A+TFVT + LK +
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 12/389 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 62 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
I +L +R++ + + ++ ++ +
Sbjct: 357 DI-----ERLINRVLDREMVEGFNHVLPE 380
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 16/388 (4%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F L L+ PLLRA GY PTPIQA IP + G D+ +A TG+GKTA F LP L
Sbjct: 5 NTFASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPIL 64
Query: 185 ERLLYRP--KRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
RLL P R P RVLILTPTREL QV + ++ T IR ++ GG++ Q +
Sbjct: 65 HRLLQNPAQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQIS 124
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
ALR DI+VATPGR++DH + +VDL + +L+LDEADR+L++GF +I ++ L PK
Sbjct: 125 ALRKPLDILVATPGRLLDHAQQK-TVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPK 183
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR--PSTLTEEVVRIRRMREVNQEA 359
+RQ +LFSAT ++++ L K L P+ +S A+R S L E+ V + + ++
Sbjct: 184 QRQNLLFSATFSDEIRALSKGVLNDPIEISV---ARRNTASELVEQSVVL--TEQAHKRD 238
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+L + ++ +V++F+ TK A+RL L AA +HGN +QA R AL F+
Sbjct: 239 LLSHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDG 298
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V +
Sbjct: 299 KVAVLVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEI 358
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWS 507
LL AI KL R + +I WS
Sbjct: 359 KLLSAI-----EKLIKRPIERTTIEGWS 381
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 217/378 (57%), Gaps = 16/378 (4%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D A+ H F L+L LL+ LGY++PTPIQ IP L G+DI A TGSGKTA
Sbjct: 6 DSAAKHG--FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTA 63
Query: 178 AFALPTLERLLYR----------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
AFALP L +L + PAIR L+LTPTRELA+QVH K A+ T ++
Sbjct: 64 AFALPILNKLTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKS 123
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287
LV GG+S Q L + DI+VATPGR++DHLR S++L+ L L+ DEADR+L++G
Sbjct: 124 ALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRG-SLNLNQLEFLVFDEADRMLDMG 182
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347
F EI +V+ PK RQT+LFSAT E + L + L P ++ +R + E
Sbjct: 183 FKDEIDAIVKQLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEV---GERNAAAVEIDQ 239
Query: 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
R+ + + A++ L +V+IFS K AA +L A + A HG+L+Q
Sbjct: 240 RVYAVDSDRKLALVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQG 299
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
R + L+ F+ V L+ATDVAARG+DII + VINY P YVHR+GRT RAG +
Sbjct: 300 AREKVLQGFKDGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNK 359
Query: 468 GYAVTFVTDNDRSLLKAI 485
G A+T + D LL+ +
Sbjct: 360 GLAITLLCSEDEHLLEEV 377
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 215/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L A GY P+PIQA IP + G+D+ +A TG+GKTAAF LP LE
Sbjct: 8 SFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLE 67
Query: 186 RLLYRPKRIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+ P +R L+LTPTRELA QV + A+ + +V GG+ Q LR
Sbjct: 68 RLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLR 127
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D + VL+LDEADR+L++GF +I +L+ PK+RQ
Sbjct: 128 QGADVLVATPGRLLD-LYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQ 186
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L K + P+ +S P T+ + + + + R+ N +L L
Sbjct: 187 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKAN---LLTKL 243
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++F+ TK A+RL +KAA +HGN +Q R +AL F+ + L
Sbjct: 244 LKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 303
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ L A
Sbjct: 304 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 363
Query: 485 I 485
I
Sbjct: 364 I 364
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 18/382 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LNL LL+A LGYS PT +Q IPLAL G D+ A TG+GKTAAFALP L+
Sbjct: 2 SFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQ 61
Query: 186 RLLYRP--------------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
RL+ P K IR LILTPTRELA QV+ I A++T+I+ +
Sbjct: 62 RLMTLPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAY 121
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GG S +Q AL + +I+VATPGR++DH+ N SV L ++ +LDEADR+L++GF +
Sbjct: 122 GGTSMNVQVKALNAGAEILVATPGRLLDHVFNG-SVSLSEVETFVLDEADRMLDMGFIVD 180
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
I +++ P RQT+ FSAT ++ V +L LT P + P+ T+ + V + +
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDK 240
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
R+ A L+ S+ + +V++F+ TKQ + +L GL +KA+ ++G+ +Q R
Sbjct: 241 HRKAELLAYLIG--SRNW-RQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL+ F+ L+ATDVAARGLDI ++ V+N+ P YVHR+GRT RAG G+A+
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357
Query: 472 TFVTDNDRSLLKAIAKRAGSKL 493
T ++ ++ LKAI + S+L
Sbjct: 358 TLMSLDEEWALKAIEELLDSRL 379
>gi|398995582|ref|ZP_10698462.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398129619|gb|EJM18978.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
Length = 448
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILHR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVAECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T ++++ V++E +L L
Sbjct: 181 LFSATTGGSGLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIITAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG EG A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNEGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|386818532|ref|ZP_10105750.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
gi|386423108|gb|EIJ36943.1| DEAD/DEAH box helicase domain protein [Thiothrix nivea DSM 5205]
Length = 446
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 216/365 (59%), Gaps = 9/365 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L+ PLLRA GY+ PTPIQ IP L+GRD+ +A TG+GKTA F LP L
Sbjct: 2 SFSELGLAEPLLRAIAEQGYATPTPIQQQGIPAVLSGRDLMAAAQTGTGKTAGFTLPMLH 61
Query: 186 RLLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RL+ + PA IR L+LTPTRELA QV + + +V GG+S Q A
Sbjct: 62 RLME--GKRPASNHIRALVLTPTRELAAQVGESVRDYGAHLPLASTIVFGGVSINPQMMA 119
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR D++VATPGR++D L +V + +L+LDEADR+L++GF +I +++ L PKR
Sbjct: 120 LRKGVDVLVATPGRLLD-LYEQNAVKFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKR 178
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ +LFSAT ++D+ L K L PL++S P +T+ + V I + R+ A+L
Sbjct: 179 RQNLLFSATFSDDITALAKGLLHDPLQVSVSPRNAAANTVKQSVYLIDKARKT---ALLS 235
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L +V++F+ TK A+RL + AA +HGN +Q R +AL F++ ++
Sbjct: 236 HLVRDNQWEQVLVFTRTKHGANRLAEKLARDGVTAAAIHGNKSQGARTKALADFKQNNIR 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V + L
Sbjct: 296 VLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGASGEAISLVEPEEHKYL 355
Query: 483 KAIAK 487
K I K
Sbjct: 356 KGIEK 360
>gi|429220230|ref|YP_007181874.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131093|gb|AFZ68108.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 477
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 222/370 (60%), Gaps = 6/370 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A++F L+L L RA LGY+KPTPIQA +P AL GRD+ G+A TGSGKTAAF LP
Sbjct: 6 ADAFSALDLHASLQRAVGELGYAKPTPIQALALPPALQGRDVLGAAQTGSGKTAAFLLPI 65
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+RL P+ R L+L PTRELA Q+ +A+FTD+R V GG+S K QE A
Sbjct: 66 LQRLQGLPRG--KTRALVLAPTRELAAQIEESALALAKFTDVRVASVFGGVSMKPQEKAF 123
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D+++ATPGR++DH ++ + L+ L VL+LDEADR+L++GF +I ++R P RR
Sbjct: 124 RGGTDLIIATPGRLLDHFQHPYA-RLEALEVLVLDEADRMLDMGFLPDIRRVLRHLPARR 182
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + +L + L P+ + A+ A +T+ + + + + LL
Sbjct: 183 QTLFFSATMPAPILQLSRELLRDPVMVGAERKAAPAQGVTQSIYPVPEELKTDLLLELLR 242
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
S I+F+ TK A+RL A +KA +HGN +QA R EAL F+
Sbjct: 243 QPS---MESAIVFTRTKHRANRLAEKLIKAGVKAERIHGNRSQAARTEALAGFKSGKYRV 299
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ + V+N+ P Y+HRVGRTARA G A+TFV + LK
Sbjct: 300 LVATDIAARGIDVEALGHVVNFDVPEIPEDYIHRVGRTARAEMTGEALTFVAPQEEGDLK 359
Query: 484 AIAKRAGSKL 493
AI + G KL
Sbjct: 360 AIERAVGRKL 369
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 219/380 (57%), Gaps = 11/380 (2%)
Query: 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSG 174
AP D ++ +L L+ L +ACE L + P+ IQ IP+AL G+D+ G A TGSG
Sbjct: 57 APKDDQPL---TWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSG 113
Query: 175 KTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
KT AFALP L LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+
Sbjct: 114 KTGAFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGM 170
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHE 294
Q L P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +
Sbjct: 171 DMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDK 230
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR 353
++++ P+ R+T LFSAT+T+ V +L + SL P+++ + L + + I + +
Sbjct: 231 ILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYK 290
Query: 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+V +L L +F +IF T + ++ L A LHG ++Q +RL AL
Sbjct: 291 DVYLVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAAL 346
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
F+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T
Sbjct: 347 NKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITM 406
Query: 474 VTDNDRSLLKAIAKRAGSKL 493
VT D L + I + G +L
Sbjct: 407 VTQYDIELYQRIEQLLGKQL 426
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/381 (41%), Positives = 235/381 (61%), Gaps = 15/381 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL+ +LRA GY+ PTPIQ IP L GRDI G+A TG+GKTA+F LP L
Sbjct: 2 SFTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLN 61
Query: 186 RLLY------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
L P R P IR LIL PTRELA+QVH ++ ++ +R V GG+ + Q
Sbjct: 62 LLQSGANTSASPARHP-IRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQ 120
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR+ +I+VATPGR++DH++ +++L + +LILDEADR+L++GF +I ++ L
Sbjct: 121 TRELRAGVEILVATPGRLLDHVQQK-AINLSKVEILILDEADRMLDMGFLPDIKRILALL 179
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--MREVNQ 357
P +RQ+++FSAT ++++ +L L +P+ + A+R +T+TE + + +RE +
Sbjct: 180 PSQRQSLMFSATFSDEIKKLAGKLLREPVLVEV---ARR-NTITELITHVVHPVVRERKR 235
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
E +L L +V++F+ TK A RL + A +HG+ TQ QR EAL F+
Sbjct: 236 E-LLAHLIKSQDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFK 294
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+ V L+ATDVAARGLDI + V+N+ P + YVHR+GRT RAG +G AV+ V ++
Sbjct: 295 QGVVRVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCED 354
Query: 478 DRSLLKAIAKRAGSKLKSRIV 498
+ LLK I K KL+S++V
Sbjct: 355 EAELLKGIEKLLKFKLESKVV 375
>gi|398891184|ref|ZP_10644598.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398187211|gb|EJM74560.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 446
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 160/393 (40%), Positives = 219/393 (55%), Gaps = 18/393 (4%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
P+ A SF L L PLL A + L ++ PT IQ A +P AL GRDI G A TGSGK
Sbjct: 12 PSSPAPQEKPSFKALGLIDPLLEALQQLSFTSPTDIQTAALPHALEGRDIIGVASTGSGK 71
Query: 176 TAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
TAAFALP L++L P+ + A ++ PTRELA Q+ E + +RC VVGG+
Sbjct: 72 TAAFALPILQKLWDDPRGLFAC---VIAPTRELAYQITEHFEALGSAMGVRCATVVGGID 128
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL P +VVATPGR+ HL N+ L L L+LDEADRLL++ F + ++
Sbjct: 129 EMSQAVALAKKPHVVVATPGRLQYHLENTKGFSLRSLKFLVLDEADRLLDMDFGPILDKI 188
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS---------------AKRPS 340
+++ P+ R T LFSAT+T V +L + SL+ P+R+ ++R S
Sbjct: 189 LKVIPQERTTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYAPLLLIRLLMRLRVSRRYS 248
Query: 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400
T++ + + V ++ L+ L + ++ +IIF+ T RL I+ A L
Sbjct: 249 TVSTLLQYYLFIPLVQKDVNLMYLANSLASNSIIIFTRTVHDCQRLAIMMRTLGFPAVPL 308
Query: 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460
HG L+Q+ RL AL F+ L+ATDVA+RGLDI V VINY P Y+HRVGR
Sbjct: 309 HGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGR 368
Query: 461 TARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
TARAGR G ++TFVT D L++ I G KL
Sbjct: 369 TARAGRSGKSITFVTQYDVELVQRIESVTGKKL 401
>gi|398925961|ref|ZP_10662200.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398171555|gb|EJM59457.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 446
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 223/364 (61%), Gaps = 12/364 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL+ P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q
Sbjct: 78 RLMPLANTSASPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQ 136
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
+ ALR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL
Sbjct: 137 KEALRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ +LFSAT + ++ +L + L P+ + +T+T+ + M + A
Sbjct: 196 PAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYK---MPSDAKRA 252
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L ++VI+FS TK RL +KA +HG+ TQA R++ALE F+
Sbjct: 253 AVVHLVKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAG 312
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDND 478
++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +
Sbjct: 313 ELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEE 372
Query: 479 RSLL 482
R LL
Sbjct: 373 RFLL 376
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 222/362 (61%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP+ L GRD+ +A TG+GKTA F LP LE
Sbjct: 2 SFTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +P R +R L+LTPTRELA QV +E + +R +V GG+ Q LR
Sbjct: 62 ILSKGQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLR 121
Query: 245 SMPDIVVATPGRMID-HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI++ATPGR++D H +N+MS + L +LILDEADR+L++GF +I ++++ P++R
Sbjct: 122 GGVDILIATPGRLLDLHQQNAMS--FNKLEILILDEADRMLDMGFINDIRKILKALPEKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + KP+ +S P +T+T+ + + + + + ++L+
Sbjct: 180 QNLMFSATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQ---KPSLLVE 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A++L ++KAA +HGN +Q R AL F+ V
Sbjct: 237 LIYQHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N P YVHR+GRT RAG G AV+ V+ ++ L+
Sbjct: 297 LVATDIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQ 356
Query: 484 AI 485
I
Sbjct: 357 DI 358
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 12/389 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + R A +R L+LTPTRELA QV +E + +R ++ GG+ Q L
Sbjct: 62 -LLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N +V L +L+LDEADR+L++GF +I +++ + PK+R
Sbjct: 121 RHGVDVLVATPGRLMD-LYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + P+ +S P +T+ + V + + + + A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQ---KSALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A +KAA +HGN +Q R +AL F+
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V++ + LL
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLN 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512
I +L +R++ + + ++ ++ +
Sbjct: 357 DI-----ERLINRVLDREMVEGFNHVLPE 380
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 222/371 (59%), Gaps = 7/371 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L+ P+L A A G+ KPTPIQA IP AL GRD+ G A TG+GKTAAFALP +
Sbjct: 8 TFESFGLASPILGALTAAGFIKPTPIQAKAIPHALAGRDVLGIAQTGTGKTAAFALPMIN 67
Query: 186 RLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+ R KR + R L+L PTRELAVQ+ I+K A +R L+VGG+S Q +
Sbjct: 68 AMTDRLHSKRF-STRALVLAPTRELAVQIEQEIKKFAAGLGLRTVLIVGGVSRFGQVQRM 126
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DIVV PGR++D L N+ + +D +LDEADR+L+LGF +I ++V + P RR
Sbjct: 127 MRGADIVVGCPGRVVD-LMNTRELVIDQCQFFVLDEADRMLDLGFMPDIRKVVNVLPARR 185
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q+ LFSAT+ ++ +L L +P+R+ + A PS + + V + N +L+
Sbjct: 186 QSALFSATMPAEIAKLANGLLREPVRVEIEAVASTPSRIEQSVYFAEGPEKRN---LLIK 242
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + SK ++F+ TK+ A R+ ++ + + AA LHGNL+Q QR AL+ F+ V
Sbjct: 243 LLHQPEFSKTVVFTRTKRGADRVALMLNSSKISAAALHGNLSQNQRQRALDAFKAGEVRA 302
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ V VIN+ P + SYVHR+GRTAR G +G AV F + L
Sbjct: 303 LVATDIAARGIDVNAVSHVINFELPNEPESYVHRIGRTARNGADGVAVAFCDATELPYLT 362
Query: 484 AIAKRAGSKLK 494
I K G K+K
Sbjct: 363 QIEKLTGIKMK 373
>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 446
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|395798906|ref|ZP_10478189.1| DEAD/DEAH box helicase [Pseudomonas sp. Ag1]
gi|421139467|ref|ZP_15599506.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens BBc6R8]
gi|395337140|gb|EJF68998.1| DEAD/DEAH box helicase [Pseudomonas sp. Ag1]
gi|404509383|gb|EKA23314.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens BBc6R8]
Length = 448
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV+ C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVQECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + ST ++++ V++E +L L
Sbjct: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNSTTRQQIITAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 218/367 (59%), Gaps = 11/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +L+A GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++R
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV + +FT +R +V GG+ Q
Sbjct: 78 LLQHASHSASPARHP-VRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMSPQT 136
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR+ +IV+ATPGR++DH++ +V+L +L++DEADR+L++GF ++ ++ L P
Sbjct: 137 AILRAGVEIVIATPGRLLDHVQQK-TVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ +LFSAT + ++ +L P+ + S +T+ + ++ E +
Sbjct: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVD---EAAKADA 252
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + + +VI+FS TK A RL +KA+ +HG+ TQ +R+ ALE F++
Sbjct: 253 VSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQGERMAALEAFKQGQ 312
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
++ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ D D
Sbjct: 313 IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDR 372
Query: 481 LLKAIAK 487
LL I K
Sbjct: 373 LLTDIEK 379
>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
gi|416874952|ref|ZP_11918445.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
gi|334842505|gb|EGM21111.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
Length = 639
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
Length = 639
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPHKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|420137008|ref|ZP_14645012.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
gi|403250242|gb|EJY63694.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
Length = 639
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa 39016]
gi|386068661|ref|YP_005983965.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|421172149|ref|ZP_15629929.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa UCBPP-PA14]
gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
aeruginosa 39016]
gi|348037220|dbj|BAK92580.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|404538376|gb|EKA47919.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 639
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 215/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L + L + CE L + PT IQ IPL L G+DI G A TGSGKTAAFA+P L+
Sbjct: 24 TWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDIIGLAETGSGKTAAFAIPILQ 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 84 ALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 141 KPHILIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + V I + ++V +L L
Sbjct: 201 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNEL 260
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ L
Sbjct: 261 AGNSF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 316
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 317 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 376
Query: 485 IAKRAGSKL 493
I + +L
Sbjct: 377 IEQLISKQL 385
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 220/368 (59%), Gaps = 13/368 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L+ + RA GY PTPIQA IP+ L GRD+ G+A TG+GKTA+F+LP L+
Sbjct: 42 FADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQL 101
Query: 187 LL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
L+ P R P +R L+L PTRELAVQV ++ A+ T +R +V GG+ K Q
Sbjct: 102 LMPHANASMSPARHP-VRALVLVPTRELAVQVADNVKAYARHTPLRATVVFGGMDMKPQT 160
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
LR +IV+ATPGR++DH+ +V L + +L++DEADR+L++GF ++ ++ L P
Sbjct: 161 EILRRGVEIVIATPGRLLDHIEQK-NVSLGQVQMLVMDEADRMLDMGFLPDLQRIINLLP 219
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEA 359
K+RQ ++FSAT + ++ +L L PL + R + E+V +I ++ E +
Sbjct: 220 KQRQNLMFSATFSPEIKKLANTFLNNPLTIEV----ARSNATAEKVTQIVYKVDEEQKRD 275
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
V+ L +VIIFS TK A RL +KA+ +HG+ TQ +R+ AL+ F+
Sbjct: 276 VVEHLIRSRDMKQVIIFSNTKIGASRLSSHLEKRGVKASAIHGDKTQQERMAALDAFKNG 335
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V+ L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ +D D
Sbjct: 336 SVEVLVATDVAARGLDISDLPAVINYDLPYNAEDYVHRIGRTGRAGASGDALSVYSDKDE 395
Query: 480 SLLKAIAK 487
LL I K
Sbjct: 396 RLLADIEK 403
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 226/385 (58%), Gaps = 10/385 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS PL +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K + R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 62 LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L +V + L +L+LDEADR+L++GF +I +++ L P +RQ
Sbjct: 122 HGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ EL K + P+ +S P +T+ + + + + + + A+L+ L
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQ---KSALLIQL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LLK
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +R++ Q + +S +
Sbjct: 358 I-----ERLINRVLERQEVEGFSPV 377
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 224/400 (56%), Gaps = 13/400 (3%)
Query: 109 DTKSFFAPA----DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
D +S P+ DG S +F +L + L A +LG+SKP+ IQ IP L GRD
Sbjct: 10 DAESIINPSGDNCDGFS-GDQTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRD 68
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
+ G A TGSGKT AF +P L+ LL P+R+ A L+L PTRELA Q+ E +
Sbjct: 69 LIGLAETGSGKTGAFVIPILQSLLRSPQRLYA---LVLAPTRELAYQISEQFEALGASIG 125
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284
++C VVGG+ Q+ AL P I++ATPGR++DHL N+ L + L+LDEADR+L
Sbjct: 126 LKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRML 185
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344
+ F EI+++V+L P R T LFSAT+T V +L + SL P+++ P L +
Sbjct: 186 SMDFEEEINQIVQLMPSERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQ 245
Query: 345 EVVRI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN 403
+ I + ++ +L + ++ ++IF+ T ++ ++ +A LHG
Sbjct: 246 HYLFIPAKFKDCYLSYILNEVAGQS----ILIFASTCNGTQKVTLMLRNLGFQAICLHGQ 301
Query: 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463
++Q RL AL F+ + L+ TDVA+RGLDI V V+NY P Y+HRVGRTAR
Sbjct: 302 MSQPNRLGALNKFKAKTRKILVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTAR 361
Query: 464 AGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
AGR G AV+FVT D L + I G KL + EQ++
Sbjct: 362 AGRAGIAVSFVTQYDVELYQRIEFLLGKKLDAYPCDEQTV 401
>gi|451988189|ref|ZP_21936328.1| ATP-dependent RNA helicase RhlE [Pseudomonas aeruginosa 18A]
gi|451754165|emb|CCQ88851.1| ATP-dependent RNA helicase RhlE [Pseudomonas aeruginosa 18A]
Length = 639
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|355646721|ref|ZP_09054594.1| hypothetical protein HMPREF1030_03680 [Pseudomonas sp. 2_1_26]
gi|354828441|gb|EHF12563.1| hypothetical protein HMPREF1030_03680 [Pseudomonas sp. 2_1_26]
Length = 639
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|386056497|ref|YP_005973019.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|392981840|ref|YP_006480427.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|416856277|ref|ZP_11911921.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|418588420|ref|ZP_13152432.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P1]
gi|418593498|ref|ZP_13157343.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P2]
gi|419755910|ref|ZP_14282262.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421178338|ref|ZP_15635953.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|421515044|ref|ZP_15961730.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|424943154|ref|ZP_18358917.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|334842152|gb|EGM20765.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|346059600|dbj|GAA19483.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
NCMG1179]
gi|347302803|gb|AEO72917.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|375040816|gb|EHS33548.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P1]
gi|375047589|gb|EHS40133.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa MPAO1/P2]
gi|384397572|gb|EIE43983.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317345|gb|AFM62725.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404348772|gb|EJZ75109.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404548668|gb|EKA57615.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|453045807|gb|EME93525.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA21_ST175]
Length = 639
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|421165295|ref|ZP_15623631.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 700888]
gi|404542268|gb|EKA51594.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 700888]
Length = 639
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|408480568|ref|ZP_11186787.1| ATP-dependent RNA helicase [Pseudomonas sp. R81]
Length = 448
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 209/350 (59%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + ++ +L L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKA---PMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + +A +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 209/350 (59%), Gaps = 5/350 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A EA GY KP+PIQ +P LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P+ R +R L+LTPTRELA QV+ + K + +V GG+ Q LR
Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L N +V D L +L+LDEADR+L++GF +I +++ PK+RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P+ +S P+ T+ + + + + ++ +L L
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKA---PMLAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L + +A +HGN +Q R +ALE F+ V L
Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V
Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 216/369 (58%), Gaps = 6/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L P+L+A GY+ PTPIQ IPL L G D+ G A TG+GKTAAF++P ++
Sbjct: 2 AFNNLPLIEPILKAVAQEGYTTPTPIQQKAIPLVLDGNDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + + P I+ LILTPTRELA+Q++ + +FT IR ++ GG+S Q AL+
Sbjct: 62 LLSTQKQSRPGIKALILTPTRELAIQINESLASYGKFTKIRHTVIFGGVSQLHQTNALKR 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N +DL L + +LDEADR+L++GF ++ +L+ + P +RQT
Sbjct: 122 GVDILVATPGRLLD-LINQKYIDLRHLEIFVLDEADRMLDMGFIHDVKKLINIIPTKRQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-VLLSL 364
+ FSAT+ ++ +L L P + P PS+ E++ + N +A +L+ L
Sbjct: 181 LFFSATMPSEIQKLADTLLKNPKYVEVTP----PSSTVEKITQKLYFTNKNDKAKLLIHL 236
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
K ++F TK + ++ L +KAA +HGN +Q R AL F+ + L
Sbjct: 237 LEKENIGSALVFGRTKHGSDKVVKLLQREGIKAAAIHGNKSQNARQNALNDFKNGKIRIL 296
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + TV NY P +YVHR+GRT RAG G A++F + +
Sbjct: 297 VATDIAARGIDIDELATVFNYDLPNIPETYVHRIGRTGRAGNSGVAISFADQDTMKEYRD 356
Query: 485 IAKRAGSKL 493
I K G K+
Sbjct: 357 IEKLIGIKI 365
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 219/378 (57%), Gaps = 8/378 (2%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
A+ S ++ +L L+ L +ACE L + P+ IQ IP+AL G+D+ G A TGSGKT
Sbjct: 47 AENGSEQKLTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKT 106
Query: 177 AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
AFALP L+ LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+
Sbjct: 107 GAFALPILQALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDM 163
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296
Q L P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++
Sbjct: 164 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 223
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREV 355
++ P+ R+T LFSAT+T+ V +L + SL P+++ + L + + I + ++V
Sbjct: 224 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDV 283
Query: 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
+L L +F +IF T + ++ L A LHG ++Q +RL AL
Sbjct: 284 YLVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNK 339
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+
Sbjct: 340 FKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVS 399
Query: 476 DNDRSLLKAIAKRAGSKL 493
D L + I G +L
Sbjct: 400 QYDIELYQRIEHLLGKQL 417
>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
gi|421151495|ref|ZP_15611108.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
gi|404527251|gb|EKA37420.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 639
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 227/385 (58%), Gaps = 10/385 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LLRA E LGY P+PIQA IP + GRD+ +A TG+GKTA F LP L+
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL + + +R L+LTPTRELA QV+ + K ++ ++ +V GG+ Q LR
Sbjct: 62 RLAGGKSAKSNHVRALVLTPTRELAAQVNGSVVKYGKYLNVNSNVVFGGVKINPQMMKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L +V L VL+LDEADR+L++GF +I +++ L P++RQ
Sbjct: 122 KGSDVLVATPGRLLD-LYQQNAVKFSQLEVLVLDEADRMLDMGFIRDIKKILALLPEKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++D+ L K + P ++S P T+ + + + + + + ++L L
Sbjct: 181 NLLFSATFSDDIRALAKGLVHNPEQISVSPPNATAKTVEQYLYNVDKKK---KPSILAKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ S+V+IFS TK A+RL + AA +HGN +Q R++ALE F+ V L
Sbjct: 238 IKENDWSQVLIFSKTKHGANRLSRFLESENVSAAAIHGNKSQGARIKALEHFKTGQVRAL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A + V ++ L A
Sbjct: 298 VATDIAARGLDIPQLPQVVNFELPHVPEDYVHRIGRTGRAGESGKAYSLVCADEAKELFA 357
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +++ +++ ++ +
Sbjct: 358 I-----ERLIQKLIPRETVEGYTPV 377
>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 635
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 216/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 214/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L LL + +++ ++KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L+
Sbjct: 64 SFSELKLVPELLESIQSMKFTKPTPIQSEAIPHALEGHDIIGLAQTGSGKTAAFAIPILQ 123
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L A L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 124 ALWEAQSPYFA---LVLAPTRELAFQIKETFDALGSTMGLRSVCIVGGMDMMDQARDLMR 180
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P ++VATPGR++DHL + L DL L++DEADRLL++ F + ++++ P +R T
Sbjct: 181 KPHVIVATPGRIMDHLETTKGFKLKDLKYLVMDEADRLLDMDFGPALDRILKVIPTKRTT 240
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T +++L + SL P+R++ + L + ++ + + + +L+ L
Sbjct: 241 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVH---DGYKNTILIHLL 297
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S+ +I+F+ T A R +L + A LHG L+QAQRL +L F+ + + LI
Sbjct: 298 SEYEGKLIIVFTRTVAHAQRTALLCRILGFNAVPLHGQLSQAQRLGSLNKFKSRSANILI 357
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 358 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 417
Query: 486 AKRAGSKL 493
G KL
Sbjct: 418 ESVLGKKL 425
>gi|399519079|ref|ZP_10759887.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112903|emb|CCH36445.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 632
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 222/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + PK+ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPDGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 354 APDEEKLLKSIERMTKQKI 372
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 218/365 (59%), Gaps = 8/365 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L+ LLRA E GY+ PTP+QA IP L GRD+ G A TG+GKTAAFALP L
Sbjct: 2 TFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPILH 61
Query: 186 RLLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RLL KR PA R LIL PTRELA Q+ F ++VGG+S + Q
Sbjct: 62 RLLAD-KRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIVGGVSHRPQNEM 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L D++VATPGR++DHL S + L VL+LDEAD +L+LGF I ++V PK+
Sbjct: 121 LARGLDVLVATPGRLLDHL-GSGRLRLATTEVLVLDEADHMLDLGFIVPIRQIVAKLPKQ 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT+ ++ L L P ++S P+A + + V + + +L+
Sbjct: 180 RQTLLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVS---GGAKRDLLV 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + S+ I+F+ TK+ A R+ A + A +HGN +Q+QRL AL+ FRK
Sbjct: 237 ELLNDREISRAIVFTRTKRGADRVAQHLESAGVGADAIHGNKSQSQRLRALDGFRKGRTR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+D+ GV V+N+ P +YVHR+GRTARAG G A++ + +R LL
Sbjct: 297 VLVATDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRTARAGATGQAISLCDNGERPLL 356
Query: 483 KAIAK 487
+AI K
Sbjct: 357 RAIEK 361
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 216/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L LS L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L
Sbjct: 58 TWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILH 117
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + I+CC++VGG+ Q L
Sbjct: 118 ALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAK 174
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 175 KPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 234
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 235 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNEL 294
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ L
Sbjct: 295 AGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L +
Sbjct: 351 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQR 410
Query: 485 IAKRAGSKL 493
I + G +L
Sbjct: 411 IEQLLGKQL 419
>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 628
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 222/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + PK+ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPDGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 354 APDEEKLLKSIERMTKQKI 372
>gi|380696525|ref|ZP_09861384.1| ATP-dependent RNA helicase [Bacteroides faecis MAJ27]
Length = 374
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 229/371 (61%), Gaps = 8/371 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN++ P+L+A E GY+ PTPIQ IP+AL RDI G A TG+GKTA+FA+P ++
Sbjct: 2 TFKELNITEPILKAVEEKGYTVPTPIQEKAIPVALVKRDILGCAQTGTGKTASFAIPIIQ 61
Query: 186 RLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L KR+ I+ LILTPTRELA+Q+ I+ +++T IR ++ GG++ + Q
Sbjct: 62 HLHLNKGEGKRL-GIKALILTPTRELALQISECIDDYSKYTRIRHGVIFGGVNQRPQVDM 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L DI+VATPGR++D L N + LD++ +LDEADR+L++GF +I ++ PK
Sbjct: 121 LHKGIDILVATPGRLLD-LMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
+QT+ FSAT+ + + L L P+++ P + ++ + V + + +E +Q +L+
Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEK-KEKSQ--LLI 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S+ K+ V+IFS TK A ++ + G A + + +HGN +QA R AL F+
Sbjct: 237 SILQKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATD+A+RG+DI + VINY P +YVHR+GRT RAG EG A+TF + +R L+
Sbjct: 297 VMVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLI 356
Query: 483 KAIAKRAGSKL 493
I K G KL
Sbjct: 357 NDIQKLTGKKL 367
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/418 (38%), Positives = 233/418 (55%), Gaps = 24/418 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L + L ACE L + PT IQ IP+AL GRD+ G A TGSGKTA+FALP L+
Sbjct: 33 TFKSLGVVDVLCEACEQLKWKSPTKIQKEAIPVALQGRDVIGLAETGSGKTASFALPILQ 92
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q L
Sbjct: 93 ALLENPQRLFA---LVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALLLAK 149
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR++DHL N+ L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 150 KPHVIIATPGRLVDHLENTKGFSLKSLKYLVMDEADRILNMDFEEEVDKILRVIPRERRT 209
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 210 YLYSATMTKKVQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNEL 269
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG + QA+RL +L F+ ++ L
Sbjct: 270 AGNSF----MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSLTKFKSKNRSIL 325
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 326 IATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 385
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
I G KL + E +E++V A++ ER R A+ME + E+
Sbjct: 386 IEHLIGKKL--------------PLYETVEEEVMALV--ERVTEAQRFAKMELKEQED 427
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 218/369 (59%), Gaps = 7/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+S P+L+A +G+ + TPIQ IPL L G D+ G A TG+GKTAAF +P +E
Sbjct: 3 TFQELNISAPILKALSNMGFEEATPIQEQTIPLGLKGEDVIGQAQTGTGKTAAFGIPMIE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + ++I L++ PTRELA+QV I +I +F IR + GG + Q +L+
Sbjct: 63 QIEKKQRKIQG---LVVAPTRELAIQVSEEIHRIGKFKGIRSLPIYGGQQMQRQIRSLKE 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DH+R ++++ D+ ++LDEAD +L +GF +I E++++ P RQT
Sbjct: 120 GPHIVVATPGRLLDHMRRK-TINISDVKTIVLDEADEMLNMGFIDDIREILKMIPHERQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ +++ ++ + +P + + + + + ++ + L +L
Sbjct: 179 LLFSATMPKEIRQIASTMMREPKEVKVKSKQLSVENIEQRFIEVHEKQKFD---ALTNLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
IIF TK+ L +A +HG+LTQ +R+ L F+ ++ L+
Sbjct: 236 DIHVPELAIIFGRTKKRVDELTDGLQARGFRAEGIHGDLTQGKRMSVLNKFKNGRIEILV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V V N+ P+D SYVHR+GRT RAG+ G A++F+T + LK I
Sbjct: 296 ATDVAARGLDISNVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAISFITPREMPHLKLI 355
Query: 486 AKRAGSKLK 494
K +K+K
Sbjct: 356 EKVTNAKVK 364
>gi|333378025|ref|ZP_08469758.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
Length = 374
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 225/371 (60%), Gaps = 8/371 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+ P+L+A E GY+ PTPIQ I ALT RDI G A TG+GKTAAF+LP ++
Sbjct: 2 TFNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPIIQ 61
Query: 186 RLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+L KR IR LILTPTRELA+Q++ + Q+T +R C++ GG+ K Q
Sbjct: 62 QLYLNKVSGKR-REIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDE 120
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L++ DI+VATPGR++D L N ++LD + +LDEADR+L++GF +I L+ PK
Sbjct: 121 LKTGIDILVATPGRLLD-LINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKE 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
+QT+ FSAT+ + L + L PL++ P++ T+ + + + + ++ +L+
Sbjct: 180 KQTLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQE---KKDLLI 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+L K V++FS TK A ++ L A + + +HGN +Q R AL F+ Q
Sbjct: 237 NLLKKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATD+AARG+D+ ++ VINY P +YVHR+GRT RAG G A+TF + + ++L
Sbjct: 297 VLIATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAML 356
Query: 483 KAIAKRAGSKL 493
I K G KL
Sbjct: 357 NDIQKLTGKKL 367
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 213/365 (58%), Gaps = 8/365 (2%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L L L C L +++PT IQ IPL L G+D+ G A TGSGKTAAFALP L+ LL
Sbjct: 7 LGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQALLE 66
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L P I
Sbjct: 67 NPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHI 123
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR++DHL N+ +L + LI+DEADR+L + F E+++++R+ P+ R+T+LFS
Sbjct: 124 IIATPGRLVDHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLLFS 183
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 368
AT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 184 ATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNN 243
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F +IF GT R +L A LHG ++Q +R+ AL FR ++ LI+TD
Sbjct: 244 F----MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTD 299
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TF+T D L + I +
Sbjct: 300 VASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQL 359
Query: 489 AGSKL 493
+L
Sbjct: 360 ISKQL 364
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/388 (38%), Positives = 223/388 (57%), Gaps = 14/388 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNLS P+LRA GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 186 RLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P++ AIR LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 62 RLTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++A PGR+ D + + +DL ++ + +LDEADR+L++GF ++ +++ P++RQ
Sbjct: 122 KGVDILIACPGRLNDLVGQGL-LDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT+ +++++L L P + DP S+ + + + E + LL
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYFVEKGNKKFLLPW 236
Query: 365 CSKTFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K +V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+
Sbjct: 237 LIKNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKT 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++
Sbjct: 297 RVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEY 356
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
L I KL R + S W +
Sbjct: 357 LAGI-----EKLNRRQIPVVSGHPWDGV 379
>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 459
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 218/372 (58%), Gaps = 12/372 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS P+L+A A Y+ PTPIQ IP+ L G D+CG A TG+GKTAAFALP+L+
Sbjct: 3 FTDLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSLDY 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
PK P R+L+L+PTRELA Q+ +F + V GG+ Q AL
Sbjct: 63 FARNPKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKALS 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DIVVATPGR++D L + + D + +LDEAD+++++GF + + +L P RQ
Sbjct: 123 QGVDIVVATPGRLLD-LIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ---EAVL 361
+ FSAT+ ++++ L L P+++S P + T E VR ++ VNQ +A+L
Sbjct: 182 NLFFSATMPKEIEALAGQFLNDPVKVSVAPQ-----STTAERVR-QQATFVNQAEKQALL 235
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ + +IF+ TK A R+ A + A +HGN +Q QR AL+ FR+ V
Sbjct: 236 HIVLETEDIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKV 295
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV VIN+ P YVHR+GRTARAG EG A++FV D++R
Sbjct: 296 KLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPY 355
Query: 482 LKAIAKRAGSKL 493
LKAI + KL
Sbjct: 356 LKAIERATRVKL 367
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L
Sbjct: 18 TFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL+ P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q
Sbjct: 78 RLMPLANTSASPARHP-VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQ 136
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
+ ALR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL
Sbjct: 137 KEALRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ +LFSAT + ++ +L + L P+ + T+T+ + M + A
Sbjct: 196 PAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQ---MHGDTKRA 252
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+FS TK RL +KA +HG+ TQ R++ALE F+
Sbjct: 253 AVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAG 312
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDND 478
++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +
Sbjct: 313 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 372
Query: 479 RSLL 482
R LL
Sbjct: 373 RYLL 376
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 230/414 (55%), Gaps = 24/414 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L L CE L + +PT IQ IPLAL G+D+ G A TGSGKT AFALP L+
Sbjct: 24 TFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQ 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A LILTPTRELA Q+ E + I+C +VVGG+ Q L
Sbjct: 84 DLLEHPQRLFA---LILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VVATPGR++DHL N+ +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 141 KPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T+ V +L + SL P+++ + + L + + I + ++V +L L
Sbjct: 201 YLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYILNEL 260
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R+ ++ L A LHG ++Q +RL L F+ + L
Sbjct: 261 AGNSF----MVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSIL 316
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V VIN+ P Y+HRVGRTARAG+ G A+TFVT D L +
Sbjct: 317 IATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQR 376
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEAT 538
I EQ I+K + E+ V ++ ER R A ME T
Sbjct: 377 I--------------EQLISKQLPLYPSEEEDVMMLV--ERVTEAQRYARMEMT 414
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 221/363 (60%), Gaps = 12/363 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L R
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 187 LL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
L+ P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+
Sbjct: 80 LMPLANTSASPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQK 138
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P
Sbjct: 139 EALRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLP 197
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+RQ +LFSAT + ++ +L + L P+ + +T+T+ + M + A
Sbjct: 198 AQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYK---MSGDQKRAA 254
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
++ L +VI+FS TK RL +KA +HG+ TQA R++ALE F+
Sbjct: 255 VVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGE 314
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDR 479
++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R
Sbjct: 315 LEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEER 374
Query: 480 SLL 482
LL
Sbjct: 375 FLL 377
>gi|423096700|ref|ZP_17084496.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q2-87]
gi|397887096|gb|EJL03579.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q2-87]
Length = 448
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYEKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 210/362 (58%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E L +LRA +G+ + TPIQ IP+A+ GRD+ G A TG+GKTAAF +P +
Sbjct: 3 TFSEFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLIN 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + +RI A LI+ PTRELA+QV IEK+ +F IR + GG Q ALR
Sbjct: 63 KIDIKEERIVA---LIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALRK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ TPGR++DH+ N ++ LDD+ +ILDEAD +L++GF +I +++L P RQT
Sbjct: 120 KPQIIIGTPGRLLDHI-NRKTIKLDDVQTVILDEADEMLDMGFMEDIQSILKLVPDERQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
MLFSAT+ ++ +L + L+ P +S P + + + + E + L L
Sbjct: 179 MLFSATMPINIQKLAQQFLSNPEHVSVIPKQVSAPLIDQSYIE---LHERQKFEALCRLI 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
IIF TK+ L A LHG+L+Q QR + FR +D L+
Sbjct: 236 DMEAPDLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ GV VIN+ P+D SYVHR+GRT RAG+EG A TFVT + L I
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFI 355
Query: 486 AK 487
K
Sbjct: 356 EK 357
>gi|333898539|ref|YP_004472412.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333113804|gb|AEF20318.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 615
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 222/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP AL GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + PK+ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPNGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R++
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLASKLLHDPERIEVTP----PNTTVERIEQRVFRLQA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 354 APDEEKLLKSIERMTKQKI 372
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 212/359 (59%), Gaps = 8/359 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+
Sbjct: 6 LCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLF 65
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL P I++ATPG
Sbjct: 66 A---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPG 122
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R+IDHL N+ +L L L++DEADR+L + F E+ +++++ P+ R+T LFSAT+T+
Sbjct: 123 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 182
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
V +L + +L P++ + + L + + I + ++ +L L +F +
Sbjct: 183 VQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF----M 238
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF T R +L A LHG ++Q++RL +L F+ + L+ATDVA+RGL
Sbjct: 239 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 298
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I G KL
Sbjct: 299 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 357
>gi|399072166|ref|ZP_10750181.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398042783|gb|EJL35752.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 494
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 215/363 (59%), Gaps = 6/363 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L++PLL+A GY+ PTPIQA IPL ++GRD+ G A TG+GKTAAFALP L R
Sbjct: 16 FTDLALAKPLLKALTDKGYTTPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 75
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K P R L+L+PTRELA Q+ + + + GG+ Q AL
Sbjct: 76 LAEDKKPAPRRGFRCLVLSPTRELATQIADSFRDYGKHMGLTVATIFGGVKYGPQMKALA 135
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ D+VVATPGR++DHL S L+ + + +LDEAD++L+LGF I ++ PK RQ
Sbjct: 136 AGVDVVVATPGRLMDHL-GEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQ 194
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+ FSAT+ ++ +L L P +++ PSA + + ++ I R + +L L
Sbjct: 195 NLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQR---KRPLLAEL 251
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F+ TK+ A R+ + ++AA +HG+ TQ QR AL F+ V L
Sbjct: 252 LADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKAL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATD+AARG+D+ V V N+ P SYVHR+GRTAR G+EG A++F D++R+LL+
Sbjct: 312 IATDIAARGIDVNDVSHVFNFELPNVPESYVHRIGRTARKGKEGVAISFCADDERNLLRD 371
Query: 485 IAK 487
I K
Sbjct: 372 IQK 374
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 215/359 (59%), Gaps = 7/359 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELNLS +L+A + +G+ + +PIQAA IPL + G+DI G A TG+GKTAAF +P +E+
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ +R + I I I+ PTRELA+QV + +I Q + + V GG Q AL++
Sbjct: 64 IDHRSRNIQGI---IIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNH 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+V TPGR++DH+ ++ LD + L+LDEAD +L +GF +I ++ PK RQTM
Sbjct: 121 PQIIVGTPGRILDHIHRG-TLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTM 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + ++ + + P + ++ + V+++ + + + LL + S
Sbjct: 180 LFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLDVQS 239
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
I+F TK+ L L A +HG+L+QA+RL L F+ +D L+A
Sbjct: 240 PDLA---IVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVA 296
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI GV V NY P+D SYVHR+GRT RAGREG A+TFVT + LK +
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 221/364 (60%), Gaps = 7/364 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L LLRA GY++PTPIQAA IP L G D+ +A TG+GKTAAFALP L+
Sbjct: 2 SFESLGLVPTLLRALAEQGYAEPTPIQAAAIPEVLAGHDLLAAAQTGTGKTAAFALPLLQ 61
Query: 186 RLLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL+ P P RVLILTPTRELA Q+ + A++ +R ++ GG+ Q ALR
Sbjct: 62 RLIDAPAATPRRPRVLILTPTRELAAQIDDNLRAYAKYLHVRSAVIFGGVGMGPQINALR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D+V+ATPGR+IDH++ +++L + VL+LDEADR+L++GF + ++ PK+RQ
Sbjct: 122 RGVDVVIATPGRLIDHMQQR-NIELSGVDVLVLDEADRMLDMGFLPALKRILTAVPKQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-IRRMREVNQEAVLLS 363
T+LFSAT + L + +P +S P P+T+T+ + + + + +LL
Sbjct: 181 TLLFSATFAAPIKALAMQFMRQPREVSVSP----PNTVTQLITHHVHPVDASRKRDLLLH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ S+ + ++FS TK A +L ++ L+AA +HGN +Q R AL F+ V
Sbjct: 237 VLSQDSRRQTLVFSRTKHGADKLVKFLEVSGLRAAAIHGNKSQNARTRALSDFKSGRVTV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + VIN+ P YVHR+GRT RAG EG A++ V+ ++ LL+
Sbjct: 297 LVATDIAARGIDIDQLPVVINHDLPMVAEDYVHRIGRTGRAGSEGLALSLVSHDESGLLR 356
Query: 484 AIAK 487
I K
Sbjct: 357 DIRK 360
>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 392
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 224/368 (60%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +LN++ +L+A E GY PTPIQA IP L G+DI G A TG+GKTAAFA+P ++
Sbjct: 22 TFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQ 81
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L +I+ LILTPTRELA+Q+ I+ A++T + ++ GG++ + Q L
Sbjct: 82 QLQADRNLNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLHK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N V L+++ +LDEADR+L++GF +I L+ PK +QT
Sbjct: 142 GVDILVATPGRLLD-LMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ + + L L +P+++S P + + + V + + + +L+S+
Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKE---KSKLLISIL 257
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
KT V++FS TK A R+ + G A + + +HGN +Q R ALE F+ + +I
Sbjct: 258 HKTQGQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VINY P +YVHR+GRT RAG G A++F + +R L+ I
Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 378 QKLTGKKL 385
>gi|408419813|ref|YP_006761227.1| ATP-dependent RNA helicase RhlE2 [Desulfobacula toluolica Tol2]
gi|405107026|emb|CCK80523.1| RhlE2: predicted ATP-dependent RNA helicase [Desulfobacula
toluolica Tol2]
Length = 439
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 224/366 (61%), Gaps = 12/366 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L LL+A ++ GY+ PTPIQ IP L GRDI A TG+GKT AFALP +E
Sbjct: 2 SFDELGLRVELLKASKSKGYTAPTPIQTRAIPAILNGRDILARAQTGTGKTDAFALPLIE 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+L R K R P R L+LTPTRELA+QV I+ A+ IRC +V GG++ Q
Sbjct: 62 -ILSRKKVKRRYP--RALVLTPTRELALQVGESIKAYARRVSIRCTVVYGGVNITPQIDR 118
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DI+VATPGR++D L + +DL + L+ DEADR+L+LGFS EI E++ P
Sbjct: 119 LKRGIDILVATPGRLLD-LASHRDLDLSRIEFLVFDEADRMLDLGFSEEISEILEFVPTE 177
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAVL 361
R+TMLFSAT T+ + L ++ L +P + PS +T E +V ++ + + N+ A+L
Sbjct: 178 RRTMLFSATYTQQIRNLAQIMLQEPDYIEVTPS----NTAAESIVQKVHLVDKPNKRALL 233
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ L + +++++F TK A++L + AA LHGN +Q+ R L+ F+ +
Sbjct: 234 IHLITTGHWTQILVFVRTKHGANKLTEKLVAKGISAAALHGNKSQSFRTRTLKEFKNGVI 293
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATDVAARGLDI + V+NY P Y+HR+GRT RAG G AV+ V+ ++R
Sbjct: 294 RTLVATDVAARGLDISNLPYVVNYDIPSVPEDYIHRIGRTGRAGVSGIAVSLVSPDERPH 353
Query: 482 LKAIAK 487
LKAI K
Sbjct: 354 LKAIEK 359
>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 475
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 231/371 (62%), Gaps = 6/371 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
NSF +LNL P+ RA +A Y+ PTPIQA IP L GRDI GSA TG+GKTAAFALP L
Sbjct: 2 NSFSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPIL 61
Query: 185 ERLLYRPKR-IPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+ L + +R IP VL+L PTRELA+QV + +R L+ GG++ Q
Sbjct: 62 DYLGRQNRRPIPNEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRD 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L I+VATPGR++D L N +DL L + +DEADR++++GF ++ +++R P+
Sbjct: 122 LNRGVHILVATPGRLLD-LMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQE 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ++ FSATL ++EL + LT P+ ++ DP + + + ++ + + +++ +LL
Sbjct: 181 RQSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQ---SKKDLLL 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ ++ + ++F+ TK A+RL+ + + A +HGN +Q R +AL FR + V
Sbjct: 238 DILNEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVK 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARG+D+ GV VIN+ P + SYVHR+GRT RAG G A++F ++ +R+ L
Sbjct: 298 VLVATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAEL 357
Query: 483 KAIAKRAGSKL 493
+AI ++ K+
Sbjct: 358 RAIERQIEQKV 368
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 227/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+KPTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L LT P + S + +T+ V I E +++A
Sbjct: 190 PKARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL L + A +HG+ +Q +R++ALE F++
Sbjct: 247 AVVKLIRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V+ L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EVEALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 221/367 (60%), Gaps = 10/367 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +LRA GY PTPIQAA IP+ L GRD+ G+A TG+GKTA F+LP ++
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV ++ + T +R +V GG+ Q
Sbjct: 78 LLANASNSASPARHP-VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQT 136
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALR+ +IV+ATPGR++DH++ +++L +L++DEADR+L++GF ++ ++ L P
Sbjct: 137 AALRAGVEIVIATPGRLLDHVQQK-TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K+RQ ++FSAT + ++ +L L P+ + S + +T+ V ++ + + +
Sbjct: 196 KKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDS--DDAKRDI 253
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ L +V++FS TK A RL +KA+ +HG+ TQ++R+ ALE F+
Sbjct: 254 VAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGE 313
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATDVAARGLDI + VINY P + YVHR+GRT RAG G A++ T D
Sbjct: 314 IDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDER 373
Query: 481 LLKAIAK 487
LL I K
Sbjct: 374 LLLDIEK 380
>gi|395648526|ref|ZP_10436376.1| ATP-dependent RNA helicase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 448
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
elegans ATCC 700633]
Length = 509
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 227/394 (57%), Gaps = 11/394 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L LL + E +G+ + TPIQ+ IPLAL G+D+ G A TG+GKTA+F LP L++
Sbjct: 3 FNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPMLQK 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ R +++ L++ PTRELA+Q + ++ + I V GG Q L+
Sbjct: 63 INLRNRKVQG---LVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKDQ 119
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVV TPGR++DH+ + ++ LD++ L+LDEAD +L +GF +I +++L P+ RQT+
Sbjct: 120 PHIVVGTPGRLLDHI-SRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTL 178
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ +D+ + + +P + S + + + V+ + + + LL + +
Sbjct: 179 LFSATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQT 238
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
T I+F TK+ L + +A +HG+L+Q +R+ L F+ H+D L+A
Sbjct: 239 PELT---IVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVA 295
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SYVHR+GRT RAG+EG +VTFVT N+ L+ I
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIE 355
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAI 520
+ R+ A + T+ I QM+ + I
Sbjct: 356 DLT----RKRMTALRPPTQMEAIEGQMKSAIEQI 385
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax
adhaerens]
Length = 424
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 216/373 (57%), Gaps = 6/373 (1%)
Query: 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 190
L PL +AC+ L + +PT IQ IP+ALTG+DI G A TGSGKTAAF LP L+ LL +
Sbjct: 1 GLMEPLCQACDRLQWKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDK 60
Query: 191 PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 250
P+R+ A LILTPTRELA Q+ IE + ++C +++GG+ Q L P I+
Sbjct: 61 PQRLFA---LILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHII 117
Query: 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310
+ TPGR+ DHL N+ L L L++DEADR+L + F AE+ +++ + PK R+T LFSA
Sbjct: 118 IGTPGRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSA 177
Query: 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370
T+T+ V +L + S+ P+++ L + + + ++ L+S+ ++
Sbjct: 178 TMTKKVKKLQRASVQDPVKIEVSTKYTTVEKLQQTYIFVPAK---YKDCYLVSILNELAG 234
Query: 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430
+ ++F T R+ ++ A LHG ++Q++RL AL F+ + L+ATDVA
Sbjct: 235 NSFMVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVA 294
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490
+RGLDI V VIN+ P Y+HRVGRTARAGR G ++ FVT D L + I +
Sbjct: 295 SRGLDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIA 354
Query: 491 SKLKSRIVAEQSI 503
KL E+ +
Sbjct: 355 KKLPEYPTVEEEV 367
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 240/413 (58%), Gaps = 20/413 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+ +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + + A IR L+LTPTRELA QV +E ++ +R +V GG+ Q L
Sbjct: 62 -LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D ++ ++ V + L +L+LDEADR+L++GF +I +++ L P +R
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNV-VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ EL K + +P+ +S P +T+ + + + + ++ A+L+
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQK---SALLIQ 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL A + AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLR 356
Query: 484 AIAKRAGSKLKSRIVAEQSITKW--------SKIIEQMEDQVAAILQEEREER 528
I +L +R++ Q I + S +I +D + +R+ R
Sbjct: 357 DI-----ERLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHR 404
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 215/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L + L ACE L + PT IQ +P+AL GRD+ G A TGSGKTA+FALP L+
Sbjct: 26 TFKSLGVVDVLCEACEQLKWKAPTKIQREALPVALQGRDVIGLAETGSGKTASFALPILQ 85
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ Q L
Sbjct: 86 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALTLAK 142
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 143 KPHVIIATPGRLVDHLENTKGFNLKSLKYLVMDEADRILNMDFEEEVDKILRVIPRERRT 202
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 203 YLYSATMTKKVQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYLVHLLNEL 262
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F ++F T R +L A LHG + QA+RL AL F+ ++ L
Sbjct: 263 AGNSF----MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKFKSKNRSIL 318
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 319 IATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 378
Query: 485 IAKRAGSKL 493
I + G KL
Sbjct: 379 IEQLIGKKL 387
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 220/388 (56%), Gaps = 14/388 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNLS PLLRA + GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 186 RLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+R A+R LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 62 RLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++A PGR+ D + +DL L + +LDEADR+L++GF ++ +++ P +RQ
Sbjct: 122 KGVDILIACPGRLNDLIGQGF-IDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT+ ++++L L P + DP S+ + + + E + +LL
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYYVEKGNKKLLLPW 236
Query: 365 CSKTFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+
Sbjct: 237 LIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKT 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++
Sbjct: 297 RVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEY 356
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
L I KL R + S W +
Sbjct: 357 LAGI-----EKLNRRKIPVVSGHPWDGV 379
>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 481
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 219/370 (59%), Gaps = 21/370 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L L CE LGY+ PTPIQAA IP+AL RDI G+A TGSGKT AFALP L+
Sbjct: 71 TFKELGLVDALCEVCEMLGYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQ 130
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL RP+ + L+L+PTRELAVQ+ E A + +RC +VVGG+ Q AL
Sbjct: 131 ALLDRPRPLFG---LVLSPTRELAVQIGQTFESFAAIS-LRCAVVVGGMDMVSQSIALAK 186
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +V T G + HL+ L++DEADRLL++ F + +++R P+ R+T
Sbjct: 187 KPHVV--TKGFSLKHLQ-----------YLVIDEADRLLDMDFGPILEKILRHLPRERRT 233
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVNQEAVLLSL 364
MLFSAT++ V+ L + SL P+R++ SA + STL + V+ R ++ L+ L
Sbjct: 234 MLFSATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTR---KDVCLVYL 290
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ + +++F+ T RL IL A LH L+Q+QRL AL + + L
Sbjct: 291 VNEFYGQSIMVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREML 350
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLDI + VINY P+D +YVHRVGRTARAG+ G+AV VT D + A
Sbjct: 351 IATDVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFLA 410
Query: 485 IAKRAGSKLK 494
+ K G + K
Sbjct: 411 VEKAIGMERK 420
>gi|440736789|ref|ZP_20916374.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
gi|440382721|gb|ELQ19213.1| ATP-dependent RNA helicase [Pseudomonas fluorescens BRIP34879]
Length = 448
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVMAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|392566869|gb|EIW60044.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 205/350 (58%), Gaps = 8/350 (2%)
Query: 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204
Y PT IQA +P AL GRDI G A TGSGKTAAFALP L++L PK + A +L P
Sbjct: 3 YKAPTEIQAEVLPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGLFAC---VLAP 59
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELAVQ+ E I +RC ++GG+ Q+ AL P IVVATPGR+ DHL +
Sbjct: 60 TRELAVQIAQQFESIGSAMGVRCATIIGGVDIMAQKVALAKKPHIVVATPGRLNDHLEET 119
Query: 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
L L L+LDEADRLL++ F I +++++ PK R T LFSAT+T V +L + SL
Sbjct: 120 KGFSLRSLQFLVLDEADRLLDMDFGPIIDKILKVIPKERTTYLFSATMTTKVAKLQRASL 179
Query: 325 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-LLSLCSKTFTSKVIIFSGTKQAA 383
+ P+R+ + STL + + I + Q+ V L+ L + + +IIF+ T A
Sbjct: 180 SNPVRIEVNSKYSTVSTLLQYYLLI----PLPQKDVHLIYLANTLAQNSIIIFTRTVHDA 235
Query: 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443
RL I+ A LHG L+Q+ RL AL F+ L+ATDVA+RGLDI V VI
Sbjct: 236 QRLSIILRTLGFPAIPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIPSVDVVI 295
Query: 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
NY P Y+HRVGRTARAGR G +VT VT D L+ I + G K+
Sbjct: 296 NYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVELVLRIEQVIGKKM 345
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 250/479 (52%), Gaps = 43/479 (8%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS +LRA GY PTPIQA IP+ L GRD+ G+A TG+GKTA F+LP ++
Sbjct: 30 FADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 89
Query: 187 LLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LL P R P +R LILTPTRELA QV ++ + T +R +V GG+ Q
Sbjct: 90 LLAHANTSASPARHP-VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGVDIAPQT 148
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
ALRS +IV+ATPGR++DH++ +++L +L++DEADR+L++GF ++ ++ L P
Sbjct: 149 AALRSGIEIVIATPGRLLDHVQQK-TLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 207
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
K RQ ++FSAT + ++ +L L P+ + S +T+ + + + EAV
Sbjct: 208 KERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTMYHVNE--QTKAEAV 265
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + +VI+FS TK A +L + A+ +HG+ TQ +R+ ALE F++
Sbjct: 266 SYIIRERNL-KQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNERMAALEAFKRGE 324
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ D D
Sbjct: 325 IEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADKDER 384
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKA------- 533
LL I K + K+ + ++ VA ERE R A
Sbjct: 385 LLVDIEK---------------MIKYKFVRAELTGFVAKPASAERERSSGRGADARNGRG 429
Query: 534 ---EMEATKAENMIAHKEEIFARPKRT-------WFVTEKEKKLAVKADKASIEKGKGS 582
E A ++ H + + WF+ E LA + D +S+ GS
Sbjct: 430 ERGEGRAPASDRSTQHTRSAYTSTPTSRKEKVDPWFLKPYEPTLAAEVDTSSVAPAGGS 488
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 220/388 (56%), Gaps = 14/388 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNLS PLLRA + GY P+PIQAA IP L GRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 186 RLLYR-PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+R A+R LILTPTRELA+Q+ E ++ +R ++ GG+ Q AL+
Sbjct: 62 RLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++A PGR+ D + +DL L + +LDEADR+L++GF ++ +++ P +RQ
Sbjct: 122 KGVDILIACPGRLNDLIGQGF-IDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT+ ++++L L P + DP S+ + + + E + +LL
Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPV----SSTVDRIQQSLYYVEKGNKKLLLPW 236
Query: 365 CSKTFTSKVI---IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K V+ +FS TK A ++ + AA +HGN +Q R+ ALE F+
Sbjct: 237 LIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKT 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F ++
Sbjct: 297 RVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEY 356
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
L I KL R + S W +
Sbjct: 357 LAGI-----EKLNRRKIPVVSGHPWDGV 379
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/400 (40%), Positives = 231/400 (57%), Gaps = 27/400 (6%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +
Sbjct: 17 SSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV 76
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ER+ P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+
Sbjct: 77 ERVSTEPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALK 132
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
IV+ TPGR++DH+ ++ L D+ +++LDEAD +L++GF +I ++R P RQ
Sbjct: 133 QGVQIVIGTPGRVLDHIHRG-TLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQ 191
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADP---SAKRPSTLTEEVVRIRRMREVNQEAVL 361
TMLFSAT +V L LR DP + R ++ ++ +V + L
Sbjct: 192 TMLFSATFPNEVKRL-------ALRYMRDPQHITVNRGEVTVPQIDQV--CYKVLERNKL 242
Query: 362 LSLCSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
SLC + + IIF TK+ L A LHG+L+QAQR + FRK
Sbjct: 243 DSLCRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRK 302
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
++ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT +
Sbjct: 303 NEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPRE 362
Query: 479 RSLLKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 511
LLK I + K+ R VAE+ W SKI++
Sbjct: 363 YKLLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 402
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 226/378 (59%), Gaps = 8/378 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L+ PLLRA GY+ PTPIQA IP + G D+ +A TG+GKTA F LP L
Sbjct: 6 TFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 186 RLLYRPK--RIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RLL P+ R P R LIL PTRELA QV + +Q T +R ++ GG++ Q A
Sbjct: 66 RLLNNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHA 125
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR DI+VATPGR++DH+R +VDL + +L+LDEADR+L++GF +I +++ L P
Sbjct: 126 LRKPLDILVATPGRLLDHVRQR-TVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVE 184
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT ++++ EL + SL P ++ +T++V+ + ++ +L
Sbjct: 185 RQTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQVIL---AEQAHKRDLLS 241
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ ++ ++V++F TK A+RL + A LHGN +QA R AL F+ V
Sbjct: 242 HIIRESSWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVV 301
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ LL
Sbjct: 302 VLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLL 361
Query: 483 KAIAKRAGSKLKSRIVAE 500
K I + + + RIV E
Sbjct: 362 KQIERMTRNPI-DRIVVE 378
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/412 (37%), Positives = 231/412 (56%), Gaps = 22/412 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L + L + CE L + PT IQ IPL L G+D+ G A TGSGKTAAFA+P L+
Sbjct: 19 TWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDVIGLAETGSGKTAAFAIPILQ 78
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 79 ALLENPQRYFA---LILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALLLAK 135
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 136 KPHILIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 195
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEL 255
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T R +L A LHG ++Q +R+ AL F+ ++ L
Sbjct: 256 AGNSF----MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEME 536
I EQ I+K + E++V + + E + + K EM+
Sbjct: 372 I--------------EQLISKQLPLYPTEEEEVMVLQERVAEAQRIVKMEMK 409
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 220/369 (59%), Gaps = 5/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L + + A GY++PTPIQA IP L +D+ +A TG+GKTA F LP LE
Sbjct: 2 TFNSLGLGQNIANALIEKGYNEPTPIQAQAIPAILDNQDVMAAAQTGTGKTAGFVLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L + P+ + + L+LTPTRELA Q+ ++ ++ +IR +V GG+S Q ALR
Sbjct: 62 KLSHHPRPKGNQVNALVLTPTRELAAQISENVKAYSKNLNIRHTVVFGGVSINPQMMALR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L N +V D+L +L+LDEADR+L++GF +I +++L P RQ
Sbjct: 122 KGVDILVATPGRLLD-LYNQKAVKFDNLQILVLDEADRMLDMGFIHDIKRIIKLLPNSRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT + + EL K + P+ +S P+ K + + + + + + + +L +
Sbjct: 181 NLLFSATFSTQIRELAKSIVNNPVEISVAPANKTADKVEQCIHPVDKSK---KSGLLTHI 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++FS TK A+RL + +A +HGN +Q R +AL F+ + L
Sbjct: 238 IKQQNMDQVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTKALAEFKSSAIQVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VINY P YVHR+GRT RAG G+A++ VT D LLK
Sbjct: 298 VATDIAARGLDIHQLPFVINYDLPHVAEDYVHRIGRTGRAGATGHAISLVTAEDIKLLKD 357
Query: 485 IAKRAGSKL 493
I + G K+
Sbjct: 358 IERVIGEKI 366
>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
Length = 456
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 224/378 (59%), Gaps = 4/378 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP
Sbjct: 7 APVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPI 66
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L RL+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q L
Sbjct: 67 LNRLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAML 126
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R +PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+
Sbjct: 127 RKVPDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQ 185
Query: 304 QTMLFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
QTMLFSAT + E++ L P L + + +T +++V V++E +L
Sbjct: 186 QTMLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILN 243
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + K I+F+ T+ AA R+ KA LHG Q R A++ + V
Sbjct: 244 WLLANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVK 303
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+
Sbjct: 304 ILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLM 363
Query: 483 KAIAKRAGSKLKSRIVAE 500
+I + + R + E
Sbjct: 364 SSIERYLKQSFERRTIKE 381
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 213/365 (58%), Gaps = 8/365 (2%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
+ L L AC+AL + P+ IQ IPLAL G+D+ G A TGSGKT AFALP L+ LL
Sbjct: 1 MGLIDTLCEACKALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLE 60
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
P+R A+ ILTPTRELA Q+ E + ++CC++VGG+ Q L P I
Sbjct: 61 NPQRYFAV---ILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHI 117
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
++ATPGR++DHL N+ +L + L++DEADR+L L F E+ +++++ P+ R+T LFS
Sbjct: 118 IIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFS 177
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKT 368
AT+T+ V +L + SL P+++ + L + V I + ++V +L L +
Sbjct: 178 ATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNS 237
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
F +IF T R ++ L A LHG ++Q +RL +L F+ + LI+TD
Sbjct: 238 F----MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTD 293
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488
VA+RGLDI V V+N+ P Y+HRVGRTARAGR G AVTFVT D L + I
Sbjct: 294 VASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHL 353
Query: 489 AGSKL 493
G KL
Sbjct: 354 LGKKL 358
>gi|344940973|ref|ZP_08780261.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 419
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 220/373 (58%), Gaps = 11/373 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS PLLRA GY+ P+PIQ+ IP L G D+ +A TG+GKTA F LP L R
Sbjct: 3 FTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHR 62
Query: 187 L---LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQET 241
L Y R +RVLILTPTRELA Q+ + K ++ +V GG+ Q
Sbjct: 63 LSQKAYGNNR--PVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMM 120
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR DI+VATPGR++D L N +V LD + LILDEADR+L++GF +I +++ PK
Sbjct: 121 RLRGGVDILVATPGRLLD-LVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPK 179
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+RQ +LFSAT +ED+ +L L P+++ P + L E+V + + + N+ +L
Sbjct: 180 KRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPR-NTAAELVEQVAYL--VNKANKTELL 236
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L + +V++F+ TK A+RL +KAA +HGN +Q R AL F+ +
Sbjct: 237 CHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEI 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATDVAARG+DI + V+N+ PR YVHR+GRT RAG EG A++ V+ ++ S
Sbjct: 297 RVLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSF 356
Query: 482 LKAIAKRAGSKLK 494
L+ + K G ++K
Sbjct: 357 LRLVEKLIGKEIK 369
>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 510
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359
Query: 485 I 485
I
Sbjct: 360 I 360
>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 438
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 217/368 (58%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LLRA A GY++PTPIQ+ IP L RD+ +A TG+GKTAAF LP L
Sbjct: 2 SFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLH 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L +R A R L+LTPTRELA QV + Q +R + GG+ Q TALR
Sbjct: 62 LLSQSTQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRR 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++DH+ VDL + +LDEADR+L++GF +I +++L P +RQ
Sbjct: 122 GVDILVATPGRLLDHV-GQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT + ++++L L PLR+ P T+T+ V + R + ++L L
Sbjct: 181 LLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVARE---AKRSLLSHLI 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V+IF+ TK A+RL G + AA +HGN +Q R AL F+ + L+
Sbjct: 238 LQGDWQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALV 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI + V+N+ P YVHR+GRT RAG +G AV+ ++ ++R LL I
Sbjct: 298 ATDIAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGI 357
Query: 486 AKRAGSKL 493
+ G ++
Sbjct: 358 ERLLGRRI 365
>gi|451979881|ref|ZP_21928289.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
gi|451762901|emb|CCQ89503.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
Length = 436
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 220/368 (59%), Gaps = 14/368 (3%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F+ LNL P+LR+ E Y PTPIQ+ IP L GRD+ G A TG+GKTAAFALP
Sbjct: 10 AEGFVSLNLIDPILRSLEEEQYQTPTPIQSESIPHLLQGRDLLGCAQTGTGKTAAFALPL 69
Query: 184 LERL-----LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
L+RL + PK R LIL PTRELAVQ+ + + LV GG+ T
Sbjct: 70 LQRLAESNTVPGPK---GARALILAPTRELAVQIEESFRVYGRHLKLSRALVYGGVKTFH 126
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q AL+ D++VATPGR++D L ++ LD + + +LDEADR+L++GF ++ +
Sbjct: 127 QIRALKRGVDVLVATPGRLLD-LMEQRALRLDKVEIFVLDEADRMLDMGFLPDVRRIHSA 185
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQ 357
P++RQTMLFSATL ++V LI L P+ +S P PST + + +I + + N+
Sbjct: 186 LPQKRQTMLFSATLPQEVRRLISTFLHDPVHVSVSP----PSTTGKNIAQKILFVDKENK 241
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+A+L SL +V++F+ TK A+++ ++A +HGN +Q RL+ALE FR
Sbjct: 242 KALLESLLGDAQIERVLVFTRTKHGANQVAKRLNQTRIRAEAIHGNKSQPARLQALEKFR 301
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
L+ATD+ ARGLD+ G+ VINY P++ SYVHR+GRTARAG G A++F
Sbjct: 302 SGKTRVLVATDIVARGLDVDGITHVINYELPKEAESYVHRIGRTARAGATGIALSFCDAG 361
Query: 478 DRSLLKAI 485
+R L I
Sbjct: 362 ERPYLSRI 369
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 214/353 (60%), Gaps = 5/353 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L + ++ AC +G+ KPT IQ IP A+ GRDI G A TGSGKTAAFA+P L+
Sbjct: 83 TFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQ 142
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+LL P+ + A LIL+PTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 143 QLLQSPQPLFA---LILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLAR 199
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++ HL N+ L L L++DEADRLL + F EI++++++ PK R T
Sbjct: 200 KPHIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNT 259
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L K SL P+++ ++ + ST+ V + + +++ L +
Sbjct: 260 YLFSATMTSKVAKLQKASLVNPIKVQV--ASTKYSTVDTLVQQYCFIPYQHKDCYLTYIL 317
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + I+F T A++RL ++ L A ++GN+ Q +RL +L F+ + L+
Sbjct: 318 NELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILV 377
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
ATDVAARGLDI V V+NY P + YVHRVGRTARAG+ G A+T VT D
Sbjct: 378 ATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYD 430
>gi|447917697|ref|YP_007398265.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
gi|445201560|gb|AGE26769.1| ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVMAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|423692871|ref|ZP_17667391.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
SS101]
gi|387997844|gb|EIK59173.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
SS101]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L ++ L ACE LG+ P+ IQ IP+AL G D+ G A TGSGKT +FALP L+
Sbjct: 28 TFKSLGVTDVLCEACEILGWKAPSKIQKESIPVALQGSDVIGLAETGSGKTGSFALPVLQ 87
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ L+LTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 88 TLLDNPQRM---YCLVLTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMMTQSMVLAK 144
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+++++++ PK R+T
Sbjct: 145 KPHIIIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEQEVNKILKVIPKERKT 204
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
L+SAT+T V +L + L P+++ + L + I + ++V +L L
Sbjct: 205 YLYSATMTSKVAKLQRACLKNPVKVEVSTKYQTVDKLQQSYCFIPAKFKDVYLVYILNEL 264
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F I+F T R+ ++ + A LHG + Q +RL AL F+ + L
Sbjct: 265 AGNSF----IVFCSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALNKFKSKSRSIL 320
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVA+RGLDI V V+N+ P Y+HRVGRTARAG+ G A+T VT D L +
Sbjct: 321 IATDVASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELYQR 380
Query: 485 IAKRAGSKL 493
I + G KL
Sbjct: 381 IEQLIGKKL 389
>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 510
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359
Query: 485 I 485
I
Sbjct: 360 I 360
>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
laidlawii PG-8A]
gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
PG-8A]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 230/373 (61%), Gaps = 10/373 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELN+ + +A GY PT IQ IP+ L+G+D+ GSA TG+GKTAAFA+P L++
Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQK 62
Query: 187 LLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+ Y K A ++ LILTPTRELA+Q+H ++ A++ +I + GG+S K QE AL
Sbjct: 63 I-YETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEEAL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ D+V+ATPGR++D L N + L D+ L+LDEAD++L++GF ++ +V PK+R
Sbjct: 122 KRGVDVVIATPGRLLD-LMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QTMLFSAT+ + ++ L K L P R++ P + +T+ V + + N+ +L+
Sbjct: 181 QTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNK---ANKTLLLID 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L V++F+ TK A++L K L L +++ +HG+ +QA R AL F+K
Sbjct: 238 LIYTLNMKSVLVFTKTKHGANKLVKNLMNLG-IESEPIHGSKSQAARERALANFKKGKTK 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+DI + VIN+ P +Y+HR+GRT RAG G A++ V +++ LL
Sbjct: 297 ILVATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLL 356
Query: 483 KAIAKRAGSKLKS 495
+ K SK+++
Sbjct: 357 TQVEKHINSKIEA 369
>gi|388468344|ref|ZP_10142554.1| DEAD/DEAH box helicase domain protein [Pseudomonas synxantha BG33R]
gi|388011924|gb|EIK73111.1| DEAD/DEAH box helicase domain protein [Pseudomonas synxantha BG33R]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|387894976|ref|YP_006325273.1| DEAD/DEAH box helicase [Pseudomonas fluorescens A506]
gi|387163383|gb|AFJ58582.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
A506]
Length = 448
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPVLNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ ++ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVGECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + +T +++V V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNATTRQQIVTAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ AA R+ KA LHG Q R A++ + V L+
Sbjct: 239 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 465
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL K + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L
Sbjct: 238 IRSNNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 219/359 (61%), Gaps = 7/359 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L LL++ E LG+ + TPIQ IPLAL G+D+ G A TG+GKTAAF LP L++
Sbjct: 3 FSELGLDPELLQSVERLGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQK 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + A++ L++ PTRELA+Q + ++++ +R +V GG Q +L+
Sbjct: 63 IDLKNR---AVQGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRSLKDQ 119
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P IVV TPGR++DH+ N ++ LD + L+LDEAD +L +GF +I ++++ PK RQT+
Sbjct: 120 PHIVVGTPGRLLDHI-NRRTLKLDQVETLVLDEADEMLNMGFLEDIEKIIKEVPKTRQTL 178
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + + + +P + +A S + + VR + + + LL + +
Sbjct: 179 LFSATMPDAIKRIGVKFMNEPEHVRIQATAMSDSLIDQYYVRCKDFEKFDIMTRLLDVQT 238
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
T I+F TK+ L + +A +HG+L+Q +R+ L+ F+K +D L+A
Sbjct: 239 PELT---IVFGRTKRRVDELSKGLEMRGYRAEGIHGDLSQQKRMSVLKSFKKGDLDILVA 295
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVAARGLDI GV V NY P+D SYVHR+GRT RAG+EG +VTF+T N+ L+ I
Sbjct: 296 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFITPNEMGYLRVI 354
>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase [Methylobacterium radiotolerans JCM 2831]
gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 506
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 220/361 (60%), Gaps = 6/361 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA GY PTPIQA IP A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE AL
Sbjct: 64 LSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + S+ L+ + +L+LDEAD++L+LGF + +V++ P++RQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L LT P++++ P A + +EV+ + ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVH---TGAKQALLGHI 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ + AA +HGN +Q QR AL F+ L
Sbjct: 240 LRDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV V+N+ P SYVHR+GRTARAG +G A++F D +++ L+
Sbjct: 300 VATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRD 359
Query: 485 I 485
I
Sbjct: 360 I 360
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 29/401 (7%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +
Sbjct: 2 SSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV 61
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ER+ P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+
Sbjct: 62 ERVSTEPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALK 117
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
IV+ TPGR++DH+ ++ L D+ +++LDEAD +L++GF +I ++R P RQ
Sbjct: 118 QGVQIVIGTPGRVLDHIHRG-TLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSERQ 176
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADP---SAKRPSTLTEEVVRI-RRMREVNQEAV 360
TMLFSAT +V L LR DP + R ++ ++ ++ E N+
Sbjct: 177 TMLFSATFPNEVKRL-------ALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNK--- 226
Query: 361 LLSLCSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
L SLC + + IIF TK+ L A LHG+L+QAQR + FR
Sbjct: 227 LDSLCRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFR 286
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
K ++ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT
Sbjct: 287 KNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPR 346
Query: 478 DRSLLKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 511
+ LLK I + K+ R VAE+ W SKI++
Sbjct: 347 EYKLLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 387
>gi|359437542|ref|ZP_09227600.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|359445111|ref|ZP_09234864.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
gi|358027712|dbj|GAA63849.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20311]
gi|358041038|dbj|GAA71113.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20439]
Length = 465
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 217/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL K + +R LILTPTRELA+QV +E+ A+ +++ +V GG+ Q LR
Sbjct: 62 RLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKARKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 214/361 (59%), Gaps = 5/361 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LS+P+L A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 TFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL +P R LILTPTRELA QV +E + ++ +V GG+ Q LR
Sbjct: 62 RLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L N ++ D L +L+LDEADR+L++GF +I +++ PK RQ
Sbjct: 122 KGVDILVATPGRLLD-LFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT + ++ +L K + P+ +S P +T+T+ + + + R+ A+L L
Sbjct: 181 NLLFSATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKA---ALLTKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ S+V+IFS TK A+RL +KAA +HGN +Q R +AL F+ V L
Sbjct: 238 IKENDWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQAL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ L
Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAG 357
Query: 485 I 485
I
Sbjct: 358 I 358
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 214/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELNL LL + ++KPTPIQA IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 90 SFSELNLIPELLETINEMKFTKPTPIQAEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 149
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + P L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 150 SLW--DAQTPYFG-LVLAPTRELAYQIKETFDALGSSMGLRTVCIVGGMDMMDQARDLMR 206
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T
Sbjct: 207 RPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTQRTT 266
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V++L + SL P++++ + L + ++ + + + L+ L
Sbjct: 267 YLFSATMTSKVEKLQRASLHNPVKVAVSTKYQTADNLVQSMMLV---SDGYKNTYLIHLL 323
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +I+F+ T + R +L + A LHG L+Q+QRL +L F+ + L+
Sbjct: 324 NEFVGKSIIVFTRTCAHSQRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILV 383
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ VT D L I
Sbjct: 384 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLRI 443
Query: 486 AKRAGSKL 493
G KL
Sbjct: 444 ENVLGKKL 451
>gi|346642808|ref|YP_258676.2| DEAD/DEAH box helicase [Pseudomonas protegens Pf-5]
gi|341579950|gb|AAY90832.2| DEAD/DEAH box helicase domain protein [Pseudomonas protegens Pf-5]
Length = 446
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRM++ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRMLEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 211/370 (57%), Gaps = 6/370 (1%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ +F +L + L A + +GY PT IQA + L G+DI G A TGSGKTAAFA+P
Sbjct: 58 STTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIGLAETGSGKTAAFAIPV 117
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+++LL P+ A +++PTREL VQ+ E I +R ++VGGL Q AL
Sbjct: 118 IQQLLDNPQPFFAC---VMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDMVSQAIAL 174
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
P +V+ TPGRM DHL N+ L L LI DEADRLL + F +I+ ++ PK R
Sbjct: 175 SKNPHVVIGTPGRMADHLANTKGFHLKKLKFLIFDEADRLLSMDFEKQINLILTQIPKSR 234
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
T LFSAT+T V +L + SL P+++ K TL + + I E ++E L+
Sbjct: 235 NTYLFSATMTSKVQKLQRASLNDPVKIEVSSKYKTVDTLVQNYIFI---PEKHKETYLVY 291
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++ K+IIF+ T + +L ++ KA ++G LTQ QRL AL F+ +
Sbjct: 292 LLTQFAGQKMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALNKFKANERNI 351
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATDVA+RGLDI V VIN+ P+ YVHRVGRTARAG+ G A+TFVT D +
Sbjct: 352 LIATDVASRGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYDVETFQ 411
Query: 484 AIAKRAGSKL 493
I + KL
Sbjct: 412 KIEQLIDKKL 421
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 213/368 (57%), Gaps = 5/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L +L+A +A GY KPTPIQ IP L+G+D+ SA TG+GKTAA+ LP L+
Sbjct: 2 TFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P RVLIL PTRELA Q+ +I K +F VGG+S Q L
Sbjct: 62 LLGAHKSSKP--RVLILAPTRELAGQITKVIAKYGKFMKPNIASFVGGVSYDRQLKELSR 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DIV+ATPGR++DH+ N +DL + +LILDEADR+L++GF I +V+ PK RQT
Sbjct: 120 PIDIVIATPGRLMDHMENR-RLDLSRIEMLILDEADRMLDMGFIPAIKRIVKATPKSRQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT + + ++K L P+R++ P + +E+ R R NQ VL L
Sbjct: 179 LLFSATADDKLMSVMKDLLKNPVRINISQDKVDPKLIKQEIYMSRDSRHKNQ--VLAQLL 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K IIFS TK+ A +L A+ +HG+L Q R L FR V FL+
Sbjct: 237 DQQNIFKAIIFSATKRHASKLATQLRDNGYAASPMHGDLKQNARNRTLAQFRTGEVQFLV 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARG+D+ V VINY PR YVHR+GRT RAG+ G A++ ++ L++I
Sbjct: 297 ATDVAARGIDVSDVSHVINYDLPRFHEDYVHRIGRTGRAGKTGVAISIALHSEMKQLQSI 356
Query: 486 AKRAGSKL 493
+ G KL
Sbjct: 357 ERYIGKKL 364
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 221/368 (60%), Gaps = 5/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L+L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358
Query: 486 AKRAGSKL 493
G L
Sbjct: 359 EHLIGHLL 366
>gi|425898142|ref|ZP_18874733.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397891895|gb|EJL08373.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 445
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQNFERRTIKE 373
>gi|399004628|ref|ZP_10707239.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398129239|gb|EJM18612.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 445
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQNFERRTIKE 373
>gi|398866146|ref|ZP_10621647.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398241657|gb|EJN27303.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 446
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNETTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
Length = 499
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 225/416 (54%), Gaps = 27/416 (6%)
Query: 81 VDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRAC 140
++ND + SE + + P D ++ N D + SF +LN+ +L++
Sbjct: 63 INNDSNQSELE----HNPLDHENEQNQ----------DSETKEITSFSQLNICEEILQSI 108
Query: 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200
+ LG+ KPT IQ +PL RDI G + TGSGKTA F +P L+ L + + A L
Sbjct: 109 QELGWEKPTLIQQKVLPLMFQKRDIIGLSETGSGKTACFIIPILQELKLKKQNFFA---L 165
Query: 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
I++PTREL +Q+ + + I C + GG+ Q L P+I+++TPGR++DH
Sbjct: 166 IISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKKPNIIISTPGRILDH 225
Query: 261 LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320
L N+ +L +L L+ DEAD+LL L F + I++L+ + PK R T LFSAT+T+ V +L
Sbjct: 226 LNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPKNRITFLFSATMTKSVAKLK 285
Query: 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK 380
K SL P+++ TL E + + + L SLC +IIFS T
Sbjct: 286 KTSLKNPIKIEVSNKYSTVKTLIENYIFLPLKYKY---TYLCSLCFYYTNKNIIIFSNTC 342
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
A +L LK+ LHG LTQ QRL +L LF+ + LI+T V ARGLD+ ++
Sbjct: 343 ATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILISTQVGARGLDLQNIK 402
Query: 441 TVINYACPRDLTS---YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
VIN+ DL S Y+HRVGRTARAG+ G ++TFVT D I K+ K+
Sbjct: 403 IVINF----DLCSCKEYIHRVGRTARAGKTGKSITFVTQYDVETFLTIEKQLNKKI 454
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 217/362 (59%), Gaps = 7/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L+A GY PTPIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 15 SFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 74
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL R R A +R L+LTPTRELA QV ++ ++ ++ +V GG+ Q + L
Sbjct: 75 -LLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKL 133
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N +V+ + L VL+LDEADR+L++GF +I +++R P +R
Sbjct: 134 GKGVDILVATPGRLLD-LYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKR 192
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + P+ +S P R +T I + + + A L+
Sbjct: 193 QNLMFSATFSDDIRKLAKGLVNNPVEISVTP---RNATAKSVEQYIYMVDQKQKTAALIH 249
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+R+ + AA +HGN +Q R +AL F+ V
Sbjct: 250 LIKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRV 309
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ ++ LL+
Sbjct: 310 LVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLR 369
Query: 484 AI 485
I
Sbjct: 370 DI 371
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L L +ACE L + P+ IQ IP+AL G+DI G A TGSGKTAAFALP L+
Sbjct: 40 TWSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQ 99
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ E + ++ ++VGGL Q L
Sbjct: 100 ALLENPQRHFA---LILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAK 156
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F AE+ +++++ P+ R+T
Sbjct: 157 KPHIIIATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRT 216
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
LFSAT+T+ V++L + L P+R+ + L + V I + ++V L+ +
Sbjct: 217 FLFSATMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDV----YLVHI 272
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ + ++F T R +L A LHG ++Q +RL AL F+ ++ L
Sbjct: 273 LNENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSIL 332
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT D L +
Sbjct: 333 ISTDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQR 392
Query: 485 IAKRAGSKL 493
I G +L
Sbjct: 393 IEHLIGKQL 401
>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 632
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 222/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA E+ GY++PTP+Q IP L GRD+ +A TG+GKTA FALP LE
Sbjct: 2 SFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + PK+ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPAGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LARLPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKASKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 354 APDEEKLLKSIERMTKQKI 372
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/437 (35%), Positives = 245/437 (56%), Gaps = 27/437 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E+NL +PLL+A + G+ +P+PIQ IPL L GRDI G A TG+GKTAAFALP L+
Sbjct: 2 NFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L +R LI+TPTRELA+Q++ E ++T ++ ++ GG+ +Q +L++
Sbjct: 62 SL--SKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKA 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR+ D L + LD + + +LDEAD++L++GF +I ++++L PK RQT
Sbjct: 120 GIDILIATPGRLND-LIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ ++++ L L P + P ++ + V + R+ N+ ++L SL
Sbjct: 179 LLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRL---NKISLLTSLI 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ S+V++F+ TK A R+ A +K +HG Q R AL F++ + L+
Sbjct: 236 KEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + V+NY P Y+HR+GRT RAG G A+ +D L+ I
Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355
Query: 486 AKRAGSKLKSRIVAEQSITKWSK-IIEQMEDQVAAILQEEREERILRKAEMEATKAENMI 544
K G +V + +KW I+E+ E V +R E + E+ K E I
Sbjct: 356 EKHIG------MVIPEVPSKWPMLILEKTEKPVRG----QRPENTTKNVGKESVKTEEKI 405
Query: 545 ----------AHKEEIF 551
AHK+ ++
Sbjct: 406 LLNEGAKKTKAHKKPVY 422
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 227/378 (60%), Gaps = 8/378 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L+ PLLRA GY+ PTPIQA IP + G D+ +A TG+GKTA F LP L
Sbjct: 6 TFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 186 RLLYRPK--RIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RLL P+ R P R LIL PTRELA QV + +Q T +R ++ GG++ Q A
Sbjct: 66 RLLNNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHA 125
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR DI+VATPGR++DH+R +VDL + +L+LDEADR+L++GF +I +++ L P
Sbjct: 126 LRKPLDILVATPGRLLDHVRQR-TVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVD 184
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT ++++ EL + SL P ++ +T++V+ + ++ +L
Sbjct: 185 RQTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQVIL---ADQAHKRDLLS 241
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ ++ ++V++F TK A+RL + A LHGN +QA R AL F+ V
Sbjct: 242 HIIRESGWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVV 301
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG EG A++ V ++ LL
Sbjct: 302 VLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLL 361
Query: 483 KAIAKRAGSKLKSRIVAE 500
K I + + ++ RIV E
Sbjct: 362 KQIERMTRNPIE-RIVVE 378
>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695930|ref|ZP_17670420.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q8r1-96]
gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|388009311|gb|EIK70562.1| DEAD/DEAH box helicase domain protein [Pseudomonas fluorescens
Q8r1-96]
Length = 448
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|335041830|ref|ZP_08534857.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333788444|gb|EGL54326.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 433
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 220/374 (58%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L PL RA GY+ P+PIQA IP + G D+ +A TG+GKTA F LP L
Sbjct: 2 TFSELGLILPLQRAVTESGYTTPSPIQAKAIPAIMQGNDVMAAAQTGTGKTAGFTLPLLH 61
Query: 186 RLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L +P R R L+LTPTRELA QV I+ ++ +R +V GG+ Q +R
Sbjct: 62 KLSEGKPARANQARALVLTPTRELAAQVEESIKTYGKYLPLRSAVVFGGVKINPQMMQMR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L ++ D+L VL+LDEADR+L++GF +I +++ + P++RQ
Sbjct: 122 RGVDVLVATPGRLLD-LYQQNAIRFDELEVLVLDEADRMLDMGFIHDIRKIINMLPQKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+LFSAT + ++ EL K + P+ +S P+ + + ++ + + + + A+L L
Sbjct: 181 TLLFSATFSNEIRELAKRLVKNPVEISVAPANTTAKKVKQWIIPVDKKQ---KPALLNQL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A++L LKAA +HGN +Q R AL F+ + L
Sbjct: 238 IQDNNWYQVLVFSKTKHGANKLTKYLEDHGLKAAAIHGNKSQGARTRALADFKSNTIQVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN P YVHR+GRT RAG G A++ V+ ++ LK
Sbjct: 298 VATDIAARGLDIDQLPHVINVDLPNVAADYVHRIGRTGRAGATGEAISLVSADEIDQLKD 357
Query: 485 IAKRAGSKLKSRIV 498
I K G+KL+ V
Sbjct: 358 IEKLIGNKLEREYV 371
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 222/388 (57%), Gaps = 25/388 (6%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
AD A+ H F L+L LL+ ALGYS+PTPIQ IP L G+DI A TGSGKT
Sbjct: 5 ADSAANHG--FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKT 62
Query: 177 AAFALPTLERL---LYR-----------PK--RIPAIRV---LILTPTRELAVQVHSMIE 217
AAF+LP L +L L R P ++PAIR L+LTPTRELA+QVH
Sbjct: 63 AAFSLPILHKLTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFV 122
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277
K A+ T ++ LV GG+S Q L + DI+VATPGR++DHLR S+ L +L L+
Sbjct: 123 KYAKLTQLKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRG-SMSLSELEFLVF 181
Query: 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
DEADR+L++GF EI +V+ PK RQT+LFSAT E + L + L P R+ +
Sbjct: 182 DEADRMLDMGFKDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEV---GE 238
Query: 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKA 397
R + E R+ + + A++ L +V+IFS K AA +L A + A
Sbjct: 239 RNAAAVEIEQRVYAVDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGA 298
Query: 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457
HG+L+Q R + L+ F+ V L+ATDVAARG+DII + V+NY P YVHR
Sbjct: 299 QAFHGDLSQGAREKVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHR 358
Query: 458 VGRTARAGREGYAVTFVTDNDRSLLKAI 485
+GRT RAG +G A+T + D LL+ +
Sbjct: 359 IGRTGRAGNKGVAITLLCREDEHLLEEV 386
>gi|359795873|ref|ZP_09298486.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
gi|359366192|gb|EHK67876.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
Length = 466
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 218/354 (61%), Gaps = 12/354 (3%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------Y 189
LL++ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+
Sbjct: 5 LLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSA 64
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ ALR ++
Sbjct: 65 SPARHP-VRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEV 123
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +RQ +LFS
Sbjct: 124 LVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFS 182
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT + ++ +L + L P+ + A R +T T +M + A ++ L
Sbjct: 183 ATFSNEIRKLGRSYLNHPVEIEV---AARNATATTITQIAYKMTSDAKRAAVVHLVKSRG 239
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
+VI+FS TK RL +KA +HG+ TQA R++ALE F+ ++ L+ATDV
Sbjct: 240 LKQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDV 299
Query: 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 482
AARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +R LL
Sbjct: 300 AARGLDVAGVPCVINYDLPYNSEDYVHRIGRTGRAGASGEAIALFTADEERYLL 353
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 224/376 (59%), Gaps = 12/376 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L+ PL RA +GY+ TPIQA IP+ LTG+D+ G+A TG+GKTAAFALP L+
Sbjct: 23 AFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQ 82
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL+ P R P +R L+L PTRELA QV ++ A++T++R +V GG+ K Q
Sbjct: 83 RLMKHENASTSPARHP-VRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 141
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
L++ +++VATPGR++DH+ +V L+ + ++LDEADR+L++GF ++ ++
Sbjct: 142 TLELKAGVEVLVATPGRLLDHIEAKNAV-LNQVEYVVLDEADRMLDIGFLPDLQRILSYL 200
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK R T+LFSAT + ++ L L P+ + S ST+ + R+ + ++
Sbjct: 201 PKTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVN---DDDKRH 257
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
LL + + +F +K RL L+AA LHG+ +Q +RL+ALE F+K
Sbjct: 258 ALLQIVRSKDIKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKG 317
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV-TDND 478
VD L+ TDVAARGLDI V V N P + YVHR+GRT RAG G AV+FV ND
Sbjct: 318 EVDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGND 377
Query: 479 RSLLKAIAKRAGSKLK 494
L+ I K +K++
Sbjct: 378 ARLVADIEKLIKTKIE 393
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358
Query: 486 AKRAGSKL 493
G L
Sbjct: 359 EHLIGHLL 366
>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 539
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 237/434 (54%), Gaps = 30/434 (6%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ELN+ +L++ E LG+ KPT IQ +P A RDI G + TGSGKTA F +P L+
Sbjct: 133 SFRELNICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPILQ 192
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L R KR + L+++PTREL +Q+ + + I C + GG+ Q L
Sbjct: 193 EL--REKR-QSFFALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAK 249
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P+I+V+TPGR++DHL N+ +L +L L+ DEAD+LL L F A I++L+ + P++R T
Sbjct: 250 KPNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRIT 309
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L K SL P+ + STL E + I + L SLC
Sbjct: 310 FLFSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKY---TYLCSLC 366
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +IIF+ T A ++ LK+ LHG LTQ QRL +L F+ + + LI
Sbjct: 367 FHFSSRSIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILI 426
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTS---YVHRVGRTARAGREGYAVTFVTDNDRSLL 482
+T V ARGLD+ ++ VIN+ DL S Y+HRVGRTARAGR G ++TFVT D
Sbjct: 427 STQVGARGLDLKDIRIVINF----DLCSCKEYIHRVGRTARAGRTGKSITFVTQYDVESF 482
Query: 483 KAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAEN 542
AI K K I K+S++ D+ A+L E+ LR A+ E EN
Sbjct: 483 LAIEKMLNKK----------IDKFSEL-----DENDALLYHEQTVEALRLADTEM--KEN 525
Query: 543 MIAHKEEIFARPKR 556
++ F + +R
Sbjct: 526 QDLYRRGKFKKARR 539
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L ++ A R LIL PTRELA QVH + + A+ +R V GG+S Q L
Sbjct: 62 LLAMEGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID LR + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+R
Sbjct: 122 RGGVDVLVATPGRLIDLLRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT ++D+ L L PL + P +T+ + VV + + R + + +
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKR---KPELFVH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K +V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V
Sbjct: 238 LMRKNKWKQVLVFAKTRNGVDALVEKLQGLG-VNADGIHGDKPQATRQRALDRFKLSEVQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ +LL
Sbjct: 297 ILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNLL 356
Query: 483 KAI 485
AI
Sbjct: 357 SAI 359
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 228/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +LRA GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|336416998|ref|ZP_08597329.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|423291591|ref|ZP_17270438.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
gi|156110962|gb|EDO12707.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|335937042|gb|EGM98952.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|392662714|gb|EIY56270.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
Length = 374
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 223/370 (60%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++
Sbjct: 2 TFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQ 61
Query: 186 RLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L + + I+ LILTPTRELA+Q+ I A++T +R ++ GG++ + Q L
Sbjct: 62 HLQMNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDML 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK +
Sbjct: 122 HKGIDILVATPGRLLD-LMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + + L L P+R+S P + + E++V +E + +L+S
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI-EQMVYFVEKKE--KSLLLVS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ K+ V++FS TK A ++ + G A + + +HGN +QA R AL F+
Sbjct: 238 ILQKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 229/384 (59%), Gaps = 15/384 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS LLRA GYS+PTPIQA IP L G DI +A TG+GKTA F LP L+R
Sbjct: 4 FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63
Query: 187 LLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L P R P +R L+LTPTRELA QV + + ++ +R +V GG+ Q + L
Sbjct: 64 LSDTPVSSGRRP-VRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISML 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R DI+VATPGR++DH+ + +VDL + +LILDEADR+L++GF +I +++ L PK+R
Sbjct: 123 RKGVDILVATPGRLLDHV-SQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKR 181
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q +LFSAT ++D+ L L P + R +T +E+V + + E +++ LLS
Sbjct: 182 QNLLFSATFSDDIKRLADSLLNTPTLIEV----ARRNTASEQVEQSVHLIEKSRKRELLS 237
Query: 364 -LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ +V++F+ TK+ A+RL LK+ +HGN TQ R +AL F+
Sbjct: 238 HMIGSQNWQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRAR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR+G AV+ V ++ L
Sbjct: 298 VLVATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQL 357
Query: 483 KAIAKRAGSKLKSRIVAEQSITKW 506
+ I +L R +A++ I +
Sbjct: 358 RDI-----ERLLKRPIAKEVIAGY 376
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 220/364 (60%), Gaps = 6/364 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L + + L RA E+ GY PTPIQA IP L RD+ G A TG+GKTAAF LP L+
Sbjct: 2 SFENLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPILQ 61
Query: 186 RL--LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L +P + A RVL+L PTRELA Q+ QF R +V GG+ Q AL
Sbjct: 62 KLSETNKPSKSRAPRVLVLAPTRELAAQIGDSFSTYGQFIRFRYTVVFGGVGQGPQVKAL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
D+++ATPGR++D L + V L+++ +LDEADR+L++GF +++ +V L P +R
Sbjct: 122 AHGVDVLIATPGRLLD-LLDQGHVKLNEVEFFVLDEADRMLDMGFIKDVYRIVPLLPVKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q++ FSAT++ + EL + LT P+ + P A + + V + + N++ +LL
Sbjct: 181 QSLFFSATMSPQIAELARKLLTSPVHVEVSPQATTVEKIDQFVFFVD---QENKDNLLLG 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L V++F+ TK A+++ ++ ++A +HGN +Q QR +A++ F+ +V
Sbjct: 238 LLQHNHLRSVLVFTRTKHRANKVALMLNKNKIEADAIHGNKSQNQRTKAMDDFKSGNVRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + VINY P + +YVHR+GRTARAG +G A +F ++R L+
Sbjct: 298 LVATDIAARGIDIEDISHVINYDLPNEPENYVHRIGRTARAGSDGTAYSFCAADERDYLR 357
Query: 484 AIAK 487
+I K
Sbjct: 358 SIEK 361
>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 510
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 220/361 (60%), Gaps = 6/361 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCH---TGAKQALLNHV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ A + +A +HGN +Q QR AL FR L
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359
Query: 485 I 485
I
Sbjct: 360 I 360
>gi|452751177|ref|ZP_21950923.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
gi|451961327|gb|EMD83737.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
Length = 591
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 221/364 (60%), Gaps = 8/364 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + NLS + A + GY PTPIQA IP+ L+GRD+ G A TG+GKTAAFALP L R
Sbjct: 4 FNDFNLSPKIAEAVASEGYETPTPIQAQAIPIGLSGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 187 LLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P ++ A RVL+L PTRELA Q+ + + V GG+ Q+ L
Sbjct: 64 LAEEPYKLTPKAPRVLVLAPTRELATQIAESFRTYGRKLRLNIETVFGGVKDGPQKRRLA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ DI+VATPGR++D L + ++ L ++ VL+LDEAD++L+LGF + ++V + PK RQ
Sbjct: 124 AGVDILVATPGRLLD-LIDQRALSLHEVQVLVLDEADQMLDLGFIHALRKIVPMVPKTRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+ FSAT+ + + EL LT P ++ P ST E V + ++ LL+L
Sbjct: 183 TLFFSATMPKQISELAGKYLTNPAKVEVQPE----STTAERVEQRCTFVNAKEKQALLTL 238
Query: 365 C-SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+T +V++F+ TK A R+ A +++A +HGN +QAQR AL+ FR+ V
Sbjct: 239 TLERTEFDRVLVFTRTKHGADRVVRNLEGADIRSAAIHGNKSQAQRTRALDAFREGKVRV 298
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI GV VIN+ P YVHR+GRTARAG +G A++FV +++S K
Sbjct: 299 LVATDIAARGIDISGVSHVINFEIPEVPEQYVHRIGRTARAGADGEAISFVAPDEKSDWK 358
Query: 484 AIAK 487
AI K
Sbjct: 359 AIEK 362
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 217/377 (57%), Gaps = 8/377 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D A ++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT
Sbjct: 54 DAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTG 113
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+
Sbjct: 114 AFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMV 170
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q L P I++ATPGR++DHL N +L + L++DEADR+L + F E+ ++++
Sbjct: 171 AQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILK 230
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVN 356
+ P+ R+T LFSAT+T+ V +L + SL P+++ + L + + I + ++V
Sbjct: 231 VLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 290
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+L L +F +IF T + ++ L A LHG ++Q +RL AL F
Sbjct: 291 LVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKF 346
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+
Sbjct: 347 KAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQ 406
Query: 477 NDRSLLKAIAKRAGSKL 493
D L + I G +L
Sbjct: 407 YDIELYQRIEHLLGKQL 423
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/416 (38%), Positives = 230/416 (55%), Gaps = 19/416 (4%)
Query: 83 NDHSDSEFD--QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRAC 140
N+ SD + D +ED P D DD + + DG + SF LNL LL +
Sbjct: 4 NESSDKQSDGSDNEDVSPPDNDDDNQETE--------DGI-ITSKSFSSLNLHPSLLSSI 54
Query: 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200
+L ++ PT IQAA IP AL GRD+ G A TGSGKT +FA+P L LL +P++ + +
Sbjct: 55 ASLQWTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPILNYLLEKPQK--QVFAV 112
Query: 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
IL PTRELA Q+H ++ + + VVGG+ Q AL P +VVATPGR++DH
Sbjct: 113 ILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPGRLLDH 172
Query: 261 LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL---CPKRRQTMLFSATLTEDVD 317
L+N+ L + L++DEADR+L + F EI+E++ + C K R+TMLFSAT+T V+
Sbjct: 173 LQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEKGRRTMLFSATMTSKVE 232
Query: 318 ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFS 377
+L + SL P+R+ + P L + + I ++ L L ++ +++F
Sbjct: 233 KLQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKY---KDCYLTYLINEHAGQSILVFG 289
Query: 378 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437
T RL ++ A LHG ++Q +RL AL F+ D LI TDVA+RGLDI
Sbjct: 290 ATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGRDILICTDVASRGLDIP 349
Query: 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
V VIN+ P Y+HRVGRTARAGR G A+ VT D + + + G +L
Sbjct: 350 SVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRLEHLLGHRL 405
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 227/387 (58%), Gaps = 8/387 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LS+ ++ +A+GY +PTPIQ IPL L+G+D+ GSA TG+GKTAAFALP L
Sbjct: 2 AFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILS 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P R+LIL PTRELA QV + I A+FT++R ++ GG+ Q AL++
Sbjct: 62 KL---ESHQPRPRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKA 118
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI++ATPGR++DHL + D + L+LDEADR+L++GF ++ +V CP+ R T
Sbjct: 119 GVDIIIATPGRLLDHLERG-TCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHT 177
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+ ++ LIK ++ P + + + P+ + V I + E + +L L
Sbjct: 178 SLFSATVPPQIETLIKWAMKNPQTIEIG-ARRSPAETVKHV--IYPVAEDQKSDLLRELL 234
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ VI+F TK A R+ IL A LH N TQ +R +AL+ FR + L+
Sbjct: 235 ERVNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLV 294
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI V VINY P+ Y+HR+GRT RA G A T + D +++I
Sbjct: 295 ATDIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSI 354
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQ 512
+ G K++ RI E K++ + E+
Sbjct: 355 ERFIGKKVE-RIKLENFNYKYTALFEE 380
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR
Sbjct: 62 RLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 218/364 (59%), Gaps = 12/364 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L LL+ GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L
Sbjct: 18 TFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL+ P R P +R LILTPTRELA QV+ +++ + T +R +V GG+ Q
Sbjct: 78 RLMPLANTSASPARHP-VRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQ 136
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
+ ALR +++VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ ++RL
Sbjct: 137 KEALRRGCEVLVATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ +LFSAT + ++ +L + L P+ + T+T+ + M + A
Sbjct: 196 PAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQ---MHGDTKRA 252
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+FS TK RL +KA +HG+ TQ R++ALE F+
Sbjct: 253 AVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAG 312
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDND 478
++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F D +
Sbjct: 313 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 372
Query: 479 RSLL 482
R LL
Sbjct: 373 RYLL 376
>gi|389685466|ref|ZP_10176790.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis O6]
gi|388551119|gb|EIM14388.1| DEAD/DEAH box helicase domain protein [Pseudomonas chlororaphis O6]
Length = 445
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+I+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRLIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQHFERRTIKE 373
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 217/377 (57%), Gaps = 8/377 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D A ++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT
Sbjct: 54 DAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTG 113
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+
Sbjct: 114 AFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMV 170
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q L P I++ATPGR++DHL N +L + L++DEADR+L + F E+ ++++
Sbjct: 171 AQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILK 230
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVN 356
+ P+ R+T LFSAT+T+ V +L + SL P+++ + L + + I + ++V
Sbjct: 231 VLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVY 290
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+L L +F +IF T + ++ L A LHG ++Q +RL AL F
Sbjct: 291 LVHILNELAGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKF 346
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ ++ LI+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+
Sbjct: 347 KAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQ 406
Query: 477 NDRSLLKAIAKRAGSKL 493
D L + I G +L
Sbjct: 407 YDIELYQRIEHLLGKQL 423
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 223/375 (59%), Gaps = 7/375 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS +L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + + PA +R L+LTPTRELA QV +E + ++ +V GG+ Q T L
Sbjct: 62 -LLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N ++ L VL+LDEADR+L++GF +I +++ + P +R
Sbjct: 121 NRGVDILVATPGRLLD-LYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + P+ +S P +T+ + V + + ++ AVL+
Sbjct: 180 QNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKT---AVLVK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL + AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQNDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G+AV+ V++ + LL+
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLR 356
Query: 484 AIAKRAGSKLKSRIV 498
I L+ R+V
Sbjct: 357 DIELLIKQNLERRVV 371
>gi|443682977|gb|ELT87384.1| hypothetical protein CAPTEDRAFT_162583 [Capitella teleta]
Length = 460
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 221/388 (56%), Gaps = 4/388 (1%)
Query: 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
G S SF++L L+ L++ CEA+G ++PTPIQ C+P L+G D G A TGSGKTAA
Sbjct: 10 GESTFLKSFVDLGLNDWLVKQCEAVGMTRPTPIQLNCVPKILSGHDCIGCAKTGSGKTAA 69
Query: 179 FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
FALP L++L P I A L+LTPTRELA Q+ + + ++ ++ GG
Sbjct: 70 FALPILQKLCEDPYGIFA---LVLTPTRELAYQIGEQFSVLGKPIGLKEAIITGGRDMID 126
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q L P +VV+TPGR+ DHLR + V L +A L++DEADRLLE F ++ +
Sbjct: 127 QGLLLAQKPHVVVSTPGRLADHLRTNADVSLKKIAFLVMDEADRLLEDNFGEQLQTIFAA 186
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQ 357
PK+RQT+LFSAT+T+ + EL ++L KP + +LT++ V + +++
Sbjct: 187 LPKKRQTLLFSATMTDTLKELEDVALNKPFFWQSKDKVATVDSLTQQYVLMPADVKDAYL 246
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+L + +S V+IF+ T + L ++ L+ LH L Q RL +L F+
Sbjct: 247 MHILRKFTEENPSSSVMIFTNTCKYCQILGLVAKEVGLECVSLHSYLMQKIRLSSLAKFK 306
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
V + ATDVA+RGLDI V VIN+ P +YVHRVGRTARAGR G A+T VT
Sbjct: 307 SHQVKIMFATDVASRGLDIPTVDLVINHNIPNKPKNYVHRVGRTARAGRLGDAITMVTQF 366
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSITK 505
D +L+ AI +KL V + + K
Sbjct: 367 DVNLVHAIEDHINAKLVEHKVDDDEVAK 394
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358
Query: 486 AKRAGSKL 493
G L
Sbjct: 359 EHLIGHLL 366
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 227/370 (61%), Gaps = 13/370 (3%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
++F + L LL++ GY+ PTPIQA +P + GRD+ G+A TG+GKTAAF LP L
Sbjct: 17 STFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 185 ERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
RL+ P R P +R LILTPTRELA QV+ +++ ++ T +R +V GG+
Sbjct: 77 HRLMPLANTSASPARHP-VRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGP 135
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q+ ALR +I+VATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ +VRL
Sbjct: 136 QKEALRRGCEILVATPGRLLDHVEQK-TVNLSQVGILVLDEADRMLDMGFLPDLDRIVRL 194
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQ 357
P +RQ +LFSAT + ++ +L + L +P+ + A R +T + V +I +M +
Sbjct: 195 LPAQRQGLLFSATFSNEIRKLGRTYLNQPVEIEV---AARNAT-ADTVSQIAYQMPSDAK 250
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
A ++ L +VI+FS TK RL ++A +HG+ +QA R++AL+ F+
Sbjct: 251 RAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFK 310
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ T +
Sbjct: 311 AGELEVLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTAD 370
Query: 478 DRSLLKAIAK 487
+ L+ I K
Sbjct: 371 ETRYLQDIEK 380
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 228/382 (59%), Gaps = 17/382 (4%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F LN+S +L+A +G+ +PTPIQA IP+AL G+D+ G A TG+GKTAAF +P LE+
Sbjct: 5 FQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVLEK 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+L K ++ ++L+PTRELA+QV + +AQ+T I+ + GG + Q LR
Sbjct: 65 ILASSK-TSNVQTIVLSPTRELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKH 123
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR+IDH++ ++ LD+++ ++LDEAD +L++GF +IH ++ P+ RQT+
Sbjct: 124 PQIIVATPGRLIDHMKRG-TIHLDEISTIVLDEADEMLDMGFIDDIHTIMSATPETRQTL 182
Query: 307 LFSATLTEDVDELIKLSLTKP--LRLSADPSAKRPSTLTEEVVRIRRMREVNQEA--VLL 362
LFSAT+ + +L + L P +R+ A +T +++ + +++ VL
Sbjct: 183 LFSATMPAPIQKLAQTFLKDPQIIRMKA-------KEVTMDLIEQSYIETPDRQKFDVLC 235
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L IIF TK+ L + +HG+LTQA+R + FR++ +D
Sbjct: 236 RLLDLQEPDLAIIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTID 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI GV V NY P+D SYVHRVGRT RAG+ G A TFV + L
Sbjct: 296 ILVATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEATTFVIPRELEHL 355
Query: 483 KAIAKRAGSKLKSRIVAEQSIT 504
+AI + +K IV Q+ T
Sbjct: 356 RAIERL----IKRHIVRHQAPT 373
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358
Query: 486 AKRAGSKL 493
G L
Sbjct: 359 EHLIGHLL 366
>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|422018909|ref|ZP_16365460.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
30120]
gi|414104095|gb|EKT65667.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Providencia alcalifaciens Dmel2]
Length = 477
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 10/366 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L+ +LRA LGY PTPIQ IP L G+D+ SA TG+GKTA F LP L+
Sbjct: 31 SFSDLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQ 90
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+L+ P+ R P IR LILTPTRELA QV +++ ++ IR +V GG+S Q
Sbjct: 91 KLVDNPRGNNRRP-IRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMK 149
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR D+++ATPGR++D L + +VDL + V +LDEADR+L++GF +I ++ PK+
Sbjct: 150 LRGGVDVLIATPGRLLD-LEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKK 208
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQ +LFSAT ++++ +L L P+ + P ++ +E+V + + + N++A LL
Sbjct: 209 RQNLLFSATFSDEIKQLASKLLNNPVSIEVAPR----NSASEQVTQYVHLVDKNRKAELL 264
Query: 363 S-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
S + + +V++F+ TK A+RL +KAA +HGN +Q R AL F+ +
Sbjct: 265 SFMIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDI 324
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARGLDI + V+N+ P YVHR+GRT RA G AV+ V ++ L
Sbjct: 325 RVLVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKL 384
Query: 482 LKAIAK 487
LK I K
Sbjct: 385 LKDIEK 390
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 221/373 (59%), Gaps = 7/373 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F +L LS P+L+A +A+G+ +PTPIQ IPL L+GRD+ A TG+GKTAAFALP +E
Sbjct: 3 GFADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL +R A L+L PTRELAVQV ++ + D R V GG + Q ALR
Sbjct: 63 RLQPNGRRPQA---LVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRH 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
++VV TPGR++DH+R ++DL +++ +++DEAD +L++GF ++ ++ P RQT
Sbjct: 120 PVEVVVGTPGRVMDHIRRE-TLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+ + V L + L P R++ +P +R + E + ++ EA+ L
Sbjct: 179 ALFSATIPDRVAALARRYLRDPARVAVEP--ERVTVPQIEQTYVEVVQRAKVEALTRILD 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+T S IIF TK+ L A LHG+L+Q QR + FR + LI
Sbjct: 237 METPPSA-IIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLI 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VINY P D SYVHR+GRT RAGR G A+T VT +R LL+ I
Sbjct: 296 ATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREI 355
Query: 486 AKRAGSKLKSRIV 498
+ G ++ R V
Sbjct: 356 ERATGVRMTRRGV 368
>gi|336171342|ref|YP_004578480.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725914|gb|AEH00052.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 411
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 217/364 (59%), Gaps = 9/364 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L+RPLLRA GY PT IQ IPL L +D+ SA TG+GKTAAFALP L+
Sbjct: 2 SFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQ 61
Query: 186 RLLY----RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
LLY K +R LI++PTRELA+Q+ + +T++R ++ GG S + Q+
Sbjct: 62 -LLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKD 120
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR DI++ATPGR++D L V+LD + L+LDEAD +L++GF ++ ++ RLCP
Sbjct: 121 VLRKGVDILIATPGRLLD-LHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPA 179
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+Q +LFSAT+ V++L K L P R+ ++ + + + + + + +++ +
Sbjct: 180 EKQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIE---LC 236
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L L T K+IIF TK +L+ KA +HG+ +Q R EAL F+K V
Sbjct: 237 LHLLRNTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEV 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
+ LIATDVAARG+DI V VIN+ P +YVHR+GRT RAG G A +F + +++
Sbjct: 297 NILIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEY 356
Query: 482 LKAI 485
+K I
Sbjct: 357 IKTI 360
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ + A E GY+KPTPIQA IP+ L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR ++ GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + +V D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ ++ L+
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + VIN P YVHR+GRT RAG+EG A++ V+ ++ L I
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358
Query: 486 AKRAGSKL 493
G L
Sbjct: 359 EHLIGHLL 366
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 227/376 (60%), Gaps = 19/376 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E+ LSR +L+A +G+ +P+PIQA IPL L G D+ G A TG+GKTAAF +PT+E
Sbjct: 7 NFGEIELSRKVLQALREMGFEEPSPIQAQTIPLTLEGHDVIGQAQTGTGKTAAFGIPTVE 66
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ ++ ++ LILTPTRELA+Q + KI +F +R + GG S Q +L+
Sbjct: 67 KI---AEKFHKVQALILTPTRELAIQTAEELNKIGKFKRVRTLPIYGGQSIDRQIRSLKR 123
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
VV TPGR++DHL N ++DL+++ L+LDEAD +L++GF +I +++ P RQT
Sbjct: 124 GVHAVVGTPGRLLDHL-NRGTLDLENVQTLVLDEADEMLDMGFIDDIENIIKQIPDGRQT 182
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-----V 360
+LFSAT+ +++L + + P R+ T+T+E + + + ++ E
Sbjct: 183 LLFSATMPGPIEKLSRRYMEHPQRV----------TITKENLTVPLIDQLYYETREKFEG 232
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L + T K+IIF TK+A L A LHG+L+Q QR ++ FR+
Sbjct: 233 LCRVLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGLHGDLSQIQRDRVMKRFREGR 292
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D LIATDVAARG+DI + VINY P+D SYVHR+GRT RAGR+G A+TF+ +
Sbjct: 293 IDILIATDVAARGIDIDDITHVINYDIPQDHESYVHRIGRTGRAGRKGVAMTFIEPKEYR 352
Query: 481 LLKAIAKRAGSKLKSR 496
L+ I K A +K++ +
Sbjct: 353 QLRLIMKLAHTKIQRK 368
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 229/368 (62%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI+ + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
Length = 437
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 221/375 (58%), Gaps = 5/375 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+ F L L P+L+A GY+ P+PIQ CIP L G D+ +A TG+GKTA F LP L
Sbjct: 3 SGFAALGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPML 62
Query: 185 ERLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
ERL + P R +R L+LTPTRELA QV + ++ D+R +V GG+ Q L
Sbjct: 63 ERLRHGPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRL 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R+ DI+VATPGR++D L+ ++ LD + VL+LDEADR+L++GF +I +L+ L P +R
Sbjct: 123 RAGADILVATPGRLLD-LQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKR 181
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q +LFSAT + + +L L +P++L A P + T+ E ++ M + +L
Sbjct: 182 QNLLFSATFSPSIRKLAHGLLHQPVQLQATPENQAAPTV-EHLLHPCDM--ARKPELLTH 238
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+R+ A L+AA +HGN +Q R AL F+ V
Sbjct: 239 LIASNDWQQVLVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRV 298
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N P YVHR+GRT RAG G+A++ V + LL
Sbjct: 299 LVATDLAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLG 358
Query: 484 AIAKRAGSKLKSRIV 498
AI + G+ L S V
Sbjct: 359 AIERLIGTSLPSETV 373
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 220/367 (59%), Gaps = 9/367 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L+ LLRA GY+KPTPIQA IPL ++G+DI G A TG+GKTAAF LP L+
Sbjct: 24 TFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQ 83
Query: 186 RLLYRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
R+L P+ +R LIL PTRELA+QV ++ ++ T IR GG+ + Q
Sbjct: 84 RILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQI 143
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
L+ +I+VATPGR++DH+ N SV + + L+LDEADR+L++GF ++ ++ + P
Sbjct: 144 AELKKGVEILVATPGRLLDHVENK-SVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP 202
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
+RQ++LFSAT +E++ +L L P+ + + T+T R+ + E + +
Sbjct: 203 AQRQSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITH---RVHPVSEYGKRGL 259
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L L + I+F TKQ RL A +KA +HG+ +Q +R++ALE F+
Sbjct: 260 LTKLLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGE 319
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
D LIATDVAARGLD+ + VINY P YVHR+GRT RAG++G A++ V+ ++
Sbjct: 320 TDALIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVC 379
Query: 481 LLKAIAK 487
L I K
Sbjct: 380 YLVDIEK 386
>gi|410093986|ref|ZP_11290448.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
gi|409758627|gb|EKN43906.1| ATP-dependent RNA helicase SrmB [Pseudomonas viridiflava UASWS0038]
Length = 445
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 223/378 (58%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ LV GG K Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLVTGGEDFKAQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S ++V V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQLNNVSELASGTRHQIVMAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 TNETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG EG A++ + D +L+
Sbjct: 296 VMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSEGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
+I + + R++ E
Sbjct: 356 SSIERYLKQSFERRVIKE 373
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 162/400 (40%), Positives = 231/400 (57%), Gaps = 27/400 (6%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+R +L+A +G+ +P+PIQAACIP+ L GRD+ G A TG+GKTAAF +P +
Sbjct: 18 SSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV 77
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ER+ P+ ++ ++LTPTRELA+QV I KIA++ +R + GG S Q AL+
Sbjct: 78 ERVSTEPR----VQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALK 133
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
IV+ TPGR++DH+ ++ L D+ +++LDEAD +L++GF +I ++R P RQ
Sbjct: 134 QGVQIVIGTPGRVLDHIHRG-TLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQ 192
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADP---SAKRPSTLTEEVVRIRRMREVNQEAVL 361
TMLFSAT +V L LR DP + R ++ ++ +V + L
Sbjct: 193 TMLFSATFPNEVKRL-------ALRYMRDPQHITVNRGEVTVPQIDQV--CYKVLERNKL 243
Query: 362 LSLCSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
SLC + + IIF TK+ L A LHG+L+QAQR + FRK
Sbjct: 244 DSLCRIVDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRK 303
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
++ L+ATDVAARGLD+ V VINY P+D SYVHR+GRT RAG+ G A+T VT +
Sbjct: 304 NEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPRE 363
Query: 479 RSLLKAIAKRAGSKLKSR------IVAEQSITKW-SKIIE 511
LLK I + K+ R VAE+ W SKI++
Sbjct: 364 YKLLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVD 403
>gi|397685466|ref|YP_006522785.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395807022|gb|AFN76427.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
Length = 592
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 218/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
L Y P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 LLFPGGHPDREHRYGPRQP---RVLVLTPTRELAAQVHDSFKVYARDLPFKSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L N +VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQAIAKGLDVLVACPGRLLD-LANQKAVDLGHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L +P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAGKLLHEPERIEVTP----PNTTVERIEQRVYRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L S+ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 THKRALLAHLISQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAI 485
+ ++ LLK I
Sbjct: 354 SPDEEKLLKGI 364
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|146284249|ref|YP_001174402.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|386022659|ref|YP_005940684.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 4166]
gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 609
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 218/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
L Y PK+ RVL+LTPTRELA QVH + A+ ++ ++ GG+
Sbjct: 62 LLFPGGHPDREHRYGPKQP---RVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQAVAKGIDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTP----PNTTVERIEQRVFRVAS 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAI 485
++ LLK I
Sbjct: 354 APDEEKLLKGI 364
>gi|406939141|gb|EKD72227.1| hypothetical protein ACD_45C00735G0003 [uncultured bacterium]
Length = 427
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 220/373 (58%), Gaps = 4/373 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + NLS P+ +A +A GY KPTPIQA IP L G+DI SA TG+GKTA+F LP L
Sbjct: 2 TFAQFNLSPPIAKALDACGYKKPTPIQAKSIPEILLGKDIVASAQTGTGKTASFVLPALH 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL K R+LILTPTRELA Q+ + I K +F + +VGG+ + Q AL
Sbjct: 62 RL-STSKATSKPRILILTPTRELANQITTAIGKYGKFLRVNIASLVGGMPYRQQLRALSH 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
D+++ATPGR++DH+ + +DL + +LILDEADR+L++GF ++ E+ + P RQT
Sbjct: 121 SVDMIIATPGRLLDHMSHR-RLDLSAIEMLILDEADRMLDMGFIDDVREIAKATPSNRQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ + ++I+ L P+++ P +T+E+ + +++ +L+
Sbjct: 180 LLFSATVDNRLSQVIRQLLNNPIKIDFSHEQLTPEKITQELYMADNPQ--HKKRLLMHFV 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K IIFS TK A +L AA LHG+L Q R +E R+ + FL+
Sbjct: 238 TDKNIFKAIIFSATKINADKLAGELTDQGYAAAALHGDLKQNVRNRTMERMRRNKIQFLV 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARG+D+ + VINY P+ YVHR+GRT RAG+ G A++ T +D ++ I
Sbjct: 298 ATDVAARGIDVQDITHVINYDLPKFSEDYVHRIGRTGRAGKTGIAISLATSSDIRHIQRI 357
Query: 486 AKRAGSKLKSRIV 498
+ L +I+
Sbjct: 358 ERLMNQVLTRKII 370
>gi|398878534|ref|ZP_10633653.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398886701|ref|ZP_10641564.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398188549|gb|EJM75850.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398199789|gb|EJM86722.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 448
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + +T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
gi|423221053|ref|ZP_17207547.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
gi|149127966|gb|EDM19188.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392622292|gb|EIY16424.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
Length = 375
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 226/371 (60%), Gaps = 7/371 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN++ P+L+A + GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++
Sbjct: 2 TFKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQ 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L K + I+ LILTPTRELA+Q+ I+ +++T +R ++ GG++ + Q
Sbjct: 62 HLQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDM 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK
Sbjct: 122 LRKGIDILVATPGRLLD-LMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
+QT+ FSAT+ + + L K L P+++ P + ++ + V + + +E +Q +L+
Sbjct: 181 KQTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEK-KEKSQ--LLI 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S+ K V+IFS TK A ++ + G A + + +HGN +QA R AL F+
Sbjct: 238 SILQKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATD+A+RG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+
Sbjct: 298 VMVATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLV 357
Query: 483 KAIAKRAGSKL 493
I K G KL
Sbjct: 358 NDIQKLTGKKL 368
>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 406
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 219/364 (60%), Gaps = 6/364 (1%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F +L L+ +L A E GY++PTPIQA IP + GRD+ GSA TG+GKTAAFALP L
Sbjct: 2 TTFKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPAL 61
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL + ++ A R L+L PTRELA QV EK + ++C L+ GG+ Q L
Sbjct: 62 HRL-GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQELE 120
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR-R 303
+ D+V+ATPGR+IDH++ + DL ++ +LILDE DR+L++GF ++ ++++ C K+ R
Sbjct: 121 AGADVVIATPGRLIDHVQQR-TADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT++E++ LI SL P+ ++ T+ EV + M++ + +L++
Sbjct: 180 QTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFD---LLVA 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L +IIF K A R+ K A +H +L Q R AL+ F+ ++
Sbjct: 237 LIESMEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKI 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+A+RGLDI V VINY P YVHR+GRT RA REG A T + ++ S L
Sbjct: 297 LVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLD 356
Query: 484 AIAK 487
AI K
Sbjct: 357 AIEK 360
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 214/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L LL A + + ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 66 SFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 125
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + A L+L PTRELA Q+ + + +R +VGG+ Q L
Sbjct: 126 ALW---EAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMR 182
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+VATPGR++DHL ++ L +L L++DEADRLL++ F + +++++ P +R T
Sbjct: 183 KPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTT 242
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T + +L + SL P+R++ + L + ++ + + + L+ L
Sbjct: 243 YLFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVS---DGYKNTYLIHLL 299
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ +IIF+ T + R +L + A LHG LTQAQRL +L F+ + LI
Sbjct: 300 NEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILI 359
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI V VINY P D +Y+HRVGRTARAG+ G +++ +T D + I
Sbjct: 360 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRI 419
Query: 486 AKRAGSKL 493
G KL
Sbjct: 420 ESVLGKKL 427
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 219/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A GY PT IQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +P + +R L+LTPTRELA QV +E ++ +V GG+S Q AL+
Sbjct: 62 ILSKGKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALK 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L N ++ L +L+LDEADR+L++GF +I +++ + PK+RQ
Sbjct: 122 QGVDILVATPGRLLD-LCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ EL K + P+ +S P +T+T+ V + + ++ +VL+ L
Sbjct: 181 NLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVG---QSDKTSVLIDL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+R+ A++KAA +HGN +Q R +AL F+ V +
Sbjct: 238 IKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVM 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V D + LL
Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHD 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERLIG 363
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 211/351 (60%), Gaps = 7/351 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L A GY P+PIQA IP L GRD+ +A TG+GKTA F LP LE
Sbjct: 2 SFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
RL R P +R LILTPTRELA Q+ + IE + +R +V GG+ Q L
Sbjct: 62 RLAAG-TRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R DI+VATPGR++D L +V+ D L VL+LDEADR+L++GF +I +++ P +R
Sbjct: 121 RGGVDILVATPGRLLD-LHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q +LFSAT ++++ +L K + P+ +S P T+T+ + + + R + A+L
Sbjct: 180 QNLLFSATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKAR---KPALLTH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++F TK A+RL A ++AA +HGN +Q R +AL+ F+ +
Sbjct: 237 LIHEHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G+A++ V
Sbjct: 297 LVATDIAARGLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLV 347
>gi|398870252|ref|ZP_10625599.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398209137|gb|EJM95820.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 446
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|398914196|ref|ZP_10656834.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398951208|ref|ZP_10673906.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426410872|ref|YP_007030971.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|398156990|gb|EJM45400.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398178936|gb|EJM66566.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|426269089|gb|AFY21166.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 446
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 227/382 (59%), Gaps = 14/382 (3%)
Query: 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKT 176
A+ A+ +F + L + +A +A GY++PTPIQA IP+ +TG D+ G+A TG+GKT
Sbjct: 12 AEEAALANVTFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKT 71
Query: 177 AAFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
A F+LP L RL+ P R P +R LILTPTRELA QV + + A+FT +R +V
Sbjct: 72 AGFSLPILNRLMPLATENTSPARHP-VRALILTPTRELADQVAANVHTYAKFTPLRSTVV 130
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290
GG+ Q LR ++V+ATPGR++DH++ S++L + VL+LDEADR+L++GF
Sbjct: 131 YGGVDINPQIQTLRRGVELVIATPGRLLDHVQQK-SINLGQVQVLVLDEADRMLDMGFLP 189
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL--TEEVVR 348
++ ++ L PK RQ +LFSAT + ++ +L K + P + A+R +T ++V+
Sbjct: 190 DLQRIINLLPKTRQNLLFSATFSPEIQKLAKSFMVSPTLIEV---ARRNATSENIKQVIF 246
Query: 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
E + AV + SK S+VI+FS TK RL + + +HG+ TQ +
Sbjct: 247 ALDSEEDKRMAVCHLIQSKAL-SQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIE 305
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
R ++LE F+ V L+ATDVAARGLDI + VINY P YVHR+GRT RAG +G
Sbjct: 306 RTKSLEAFKAGEVTVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKG 365
Query: 469 YAVTFVTDNDRSLLKAIAKRAG 490
A +FV D LK I K G
Sbjct: 366 TAYSFVVKRDERALKDIEKLIG 387
>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 441
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 215/369 (58%), Gaps = 6/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + PLL+A E L ++ PT IQ CIP A+ GRDI G A TGSGKT AF +P L
Sbjct: 5 TFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILH 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA-LR 244
RL P+ A +L+PTRELA Q+ + E + ++ ++VGG ++Q+ L
Sbjct: 65 RLWDNPQGYFAC---VLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVRLA 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I+VATPGR+ DHL+++ L L L+LDEADRLL+L F EI E+++ PK R
Sbjct: 122 QKPHIIVATPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKERC 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T LFSAT+T +V +L + SL+ P+R+ D S R +T++ V V +E L+ L
Sbjct: 182 TYLFSATMTANVSKLQRASLSDPVRV--DASLFRYTTVSTLVQHYLLCPLVEKEVTLVYL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + +I+F T A RL I+ A LHG LTQ+QRL A F+ L
Sbjct: 240 INSLVQNLIIVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSKIL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVA+RGLD+ V VINY P Y+HRVGRTARAGR G ++ VT D L+
Sbjct: 300 VATDVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQYDAELMLR 359
Query: 485 IAKRAGSKL 493
+ K KL
Sbjct: 360 LEKVLNQKL 368
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 217/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LILTPTRELA+QV +E+ A+ +D+ +V GG+ Q LR
Sbjct: 62 RLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++++ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRTNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 423
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 238/375 (63%), Gaps = 10/375 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + +PLL A LGY +PT +Q IPL L +D+ +A TG+GKTAAFALP L+
Sbjct: 2 SFEKLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + +R +IL+PTREL++Q++ I +++ DI+ ++VGG + Q AL+
Sbjct: 62 KMRKHVES-KGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREALKK 120
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+IV+ATPGR+++H+ N +S L D+ V +LDEADR+L++GF+ +I ++ L PKR QT
Sbjct: 121 GTEIVIATPGRLLEHIENGLS--LKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-- 363
+LFSAT ++ V +L KL LTKP + +AK+ +T+ + + ++ + + ++A LL+
Sbjct: 179 LLFSATFSDKVRKLSKLILTKPAFIE---TAKKNTTV-DTINQVAYLVDTVRKAELLAYL 234
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ S+ F +V++F+ TK +A L LK +HG+ T+A RL+ L F++ +
Sbjct: 235 IGSRNF-PQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRV 293
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+A+RGLDI + VINY P YVHRVGRT RAGREG A++ + ++ +K
Sbjct: 294 LVATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIK 353
Query: 484 AIAKRAGSKLKSRIV 498
I K G K+ V
Sbjct: 354 DIEKLIGQKIPQETV 368
>gi|398857768|ref|ZP_10613465.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398905928|ref|ZP_10653194.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398173884|gb|EJM61699.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398240326|gb|EJN26009.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 448
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVEECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + +T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|374262391|ref|ZP_09620958.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
gi|363537177|gb|EHL30604.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
Length = 418
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 216/369 (58%), Gaps = 5/369 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L PLLRA GY++P+PIQA IP L G D+ SA TG+GKTA+F LP L+
Sbjct: 2 SFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQ 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL +P+ + +VLILTPTRELA QVH I + + +R +V GG+ Q LR
Sbjct: 62 RLHNQPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+I+VATPGR++D L ++ D+ L+LDEADR+L++GF +I ++ L PK RQ
Sbjct: 122 GGVEILVATPGRLMD-LYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT +E + L K L KP+ + P + + V + + R + A+L L
Sbjct: 181 NLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNR---KHALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
K + ++FS TK A++L + AA +HGN +Q+QR + L F+ + L
Sbjct: 238 IHKNKWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHIL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + V+NY P+ YVHR+GRT RAG G A++ V ++ L+A
Sbjct: 298 VATDIAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQA 357
Query: 485 IAKRAGSKL 493
I K KL
Sbjct: 358 IEKLIKRKL 366
>gi|429765433|ref|ZP_19297729.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
gi|429186393|gb|EKY27337.1| putative ATP-dependent RNA helicase RhlE [Clostridium celatum DSM
1785]
Length = 426
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 225/369 (60%), Gaps = 6/369 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELN+ P+L+A GY KPT IQ IP+ L GRDI G A TG+GKTAAFA+P ++
Sbjct: 3 FKELNVIEPVLKAISEAGYEKPTEIQENSIPVVLKGRDILGCAQTGTGKTAAFAIPIIQN 62
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
++ +I+ LI+ PTRELA+Q+ A++ DI+ ++ GG++ Q +
Sbjct: 63 IVTAKGNSKERSIKALIVAPTRELAIQIEENFTIYAKYLDIKNTVIFGGVNQTSQVRKIN 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ D++VATPGR++D L N +DL ++ +LDEADR+L++G ++ +++ PK RQ
Sbjct: 123 AGVDVLVATPGRLLD-LVNQRHIDLSNVKYFVLDEADRMLDMGMIHDVKKIISKLPKERQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT+ ++V +L+ L P+++ P + +++ V + + N++++L+ L
Sbjct: 182 NLLFSATMPKEVTKLVNSILKNPVKVEVQPVSSTAEIISQGVYFVPKK---NKKSLLIHL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
VI+FS TK A+++ A +++A +HGN +Q QR AL F++ ++ L
Sbjct: 239 LKDESIKSVIVFSRTKHGANKIAKDLEKAGIQSAAIHGNKSQNQRQLALNNFKEGNIRVL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + ++++ ++
Sbjct: 299 VATDIAARGIDIDELSHVINYDLPDVAETYVHRIGRTGRAGASGVAITFCDEEEKAMFRS 358
Query: 485 IAKRAGSKL 493
I K G +
Sbjct: 359 IEKIIGKSI 367
>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
Length = 457
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 225/373 (60%), Gaps = 8/373 (2%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ +F L+ PL RA L + PTPIQ IP AL GRD+ G A TG+GKTAAFALP
Sbjct: 3 STTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPL 62
Query: 184 LERLLYRPKRIPAIRV---LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
L L+ + P R LIL+PTRELAVQ+ I +++ T I C+V GG+S + Q
Sbjct: 63 LHHLMTVGGK-PTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQI 121
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300
AL DI+VATPGR++D L ++DL + LILDEADR+L++GF ++ ++V CP
Sbjct: 122 QALARGVDILVATPGRLLD-LMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360
RQ+M+FSAT+ + +++L K LT P ++S P+ + + V + + ++
Sbjct: 181 DDRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVP---QRAKKHW 237
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L+ SK T ++++F+ TK A+RL A ++A +HGN +Q R +AL F+
Sbjct: 238 LIDFVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGE 297
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATD+ ARG+ + + V+N+ P + SYVHR+GRTARAGR G A+ V ++R+
Sbjct: 298 IDVLVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERA 357
Query: 481 LLKAIAKRAGSKL 493
LK I K G L
Sbjct: 358 KLKQIIKLTGIDL 370
>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 557
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 218/366 (59%), Gaps = 8/366 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F EL L+ P+L+A +S PTPIQA +P L GRD+ G A TG+GKTAAFALP L
Sbjct: 7 NTFPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPIL 66
Query: 185 ERLL---YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
L+ RP+R A R L+L+PTREL+ Q+ + L +GG+ Q
Sbjct: 67 HHLVTKRLRPERRSA-RALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQAR 125
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
+L D++VATPGR++D L N+ +V LD + V +LDEAD++L++GF I +V P
Sbjct: 126 SLAGGVDVLVATPGRLVDLLENN-AVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPH 184
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+R+ + FSAT+ ++++L L+ P+R++ P AK + ++V R + N +L
Sbjct: 185 KRRNLFFSATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPN---LL 241
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ + + + ++FS TK A R+ A + A +HGN +Q QR AL FR+ V
Sbjct: 242 VEVLGEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVV 301
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV VINY P SYVHR+GRTARAGREG A++F +R
Sbjct: 302 KVLVATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPF 361
Query: 482 LKAIAK 487
L+ I +
Sbjct: 362 LRDIER 367
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 231/381 (60%), Gaps = 18/381 (4%)
Query: 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGK 175
PAD +F +SF L +LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GK
Sbjct: 15 PADDITF--DSF---GLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGK 69
Query: 176 TAAFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
TA FALP ++RLL P R P +R L+LTPTRELA QV+ + + A+ TD+R +
Sbjct: 70 TAGFALPIIQRLLPLANASASPARHP-VRALMLTPTRELADQVYDNVARYARHTDLRSTV 128
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289
V GG+ Q ALR +I+VATPGR++DH++ SV+L + +L+LDEADR+L++GF
Sbjct: 129 VFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFL 187
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349
++ ++ L P +RQT+LFSAT + ++ +L L +P+ + S + + V ++
Sbjct: 188 PDLQRIINLLPAKRQTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANENVRQTVYQV 247
Query: 350 RRMREVNQEAVLLSL---CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ ++ QEAV+ L + + + I+F +K RL + AA +HG+ TQ
Sbjct: 248 QDGQK--QEAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQ 305
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R++ LE F++ +D L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG
Sbjct: 306 TERMQTLEGFKQGTIDALVATDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTGRAGA 365
Query: 467 EGYAVTFVTDNDRSLLKAIAK 487
G A++ D LL I K
Sbjct: 366 TGDALSIFVPGDERLLADIEK 386
>gi|397662817|ref|YP_006504355.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
gi|395126228|emb|CCD04409.1| RNA helicase [Legionella pneumophila subsp. pneumophila]
Length = 414
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L + PL RA LGY+ PT IQ IPL L G D+ GSA TG+GKTA+F LP L+
Sbjct: 2 SFKQLAMIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQ 61
Query: 186 RLLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ + + P ++VLILTPTRELA+QVH I + ++ +R ++ GG+ + Q L
Sbjct: 62 KASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLD 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S +I+VATPGR++D L +V D++ L+LDEADR+L++GF +I ++++L P +RQ
Sbjct: 122 SGLEILVATPGRLLD-LYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 363
+LFSAT T +V L + L K + + P T+ + V + R N + LLS
Sbjct: 181 NLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDR----NHKLALLSH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K + ++FS TK A++L + + + +HGN +QAQR +AL F+ V
Sbjct: 237 LLHKNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQT 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL+
Sbjct: 297 LIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLQ 356
Query: 484 AIAKRAGSKL 493
+I K KL
Sbjct: 357 SIEKLINQKL 366
>gi|398838810|ref|ZP_10596069.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398114480|gb|EJM04299.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 448
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + +T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR
Sbjct: 62 RLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTIDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|378949418|ref|YP_005206906.1| protein SrmB [Pseudomonas fluorescens F113]
gi|359759432|gb|AEV61511.1| SrmB [Pseudomonas fluorescens F113]
Length = 448
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ ST ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSV 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|392595723|gb|EIW85046.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 465
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 215/372 (57%), Gaps = 22/372 (5%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L L PLL+A + + + +PT IQ+ +P AL GRDI G A TGSGKTAAFALP L++L
Sbjct: 20 LGLIDPLLKALDQVNFKQPTEIQSQALPSALLGRDIIGVAETGSGKTAAFALPILQKLWE 79
Query: 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDI 249
PK + A IL PTRELA Q+ E + +RC ++VGG+ Q AL P I
Sbjct: 80 EPKGLFAC---ILAPTRELAYQISQQFESLGSAMGVRCLVLVGGVDRMPQAVALAKRPHI 136
Query: 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309
+VATPGR+ DHL+N+ L L L+LDEADRLL++ F +I +++++ PK R T LFS
Sbjct: 137 IVATPGRLNDHLQNTKGFSLRSLKFLVLDEADRLLDMDFGPDIDQILKVIPKERTTYLFS 196
Query: 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTF 369
AT+T V +L + SL+ P+R+ + STL + + I ++ L+ L +
Sbjct: 197 ATMTTKVAKLQRASLSNPVRVEVSSKYQTVSTLLQYYLFIPL---AQKDVHLVYLVNSLA 253
Query: 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429
++ +I+F+ T A RL I+ A LHG L+Q+QRL AL F+ + L+ATDV
Sbjct: 254 SNSIILFTRTVHDAQRLSIVLRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRNILVATDV 313
Query: 430 AAR----------------GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
A+R GLD+ V VIN+ P Y+HRVGRTARAGR G +VT
Sbjct: 314 ASRHVLHSGFMGPTDHHYRGLDLPSVDVVINFDIPSHSKDYIHRVGRTARAGRSGKSVTI 373
Query: 474 VTDNDRSLLKAI 485
VT D L++ I
Sbjct: 374 VTQYDVELIQRI 385
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL PK + +R LIL PTRELA+QV +E+ A+ +++ +V GG+ Q LR
Sbjct: 62 RLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I ++ P +RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRIIAKMPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++AL+ F+ V L
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|52840505|ref|YP_094304.1| DEAD/DEAH box helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 414
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L PL RA LGY+ PT IQ IPL L G D+ GSA TG+GKTA+F LP L+
Sbjct: 2 SFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQ 61
Query: 186 RLLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ + + P ++VLILTPTRELA+QVH I + ++ +R ++ GG+ + Q L
Sbjct: 62 KASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLD 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S +I+VATPGR++D L +V D++ L+LDEADR+L++GF +I ++++L P +RQ
Sbjct: 122 SGLEILVATPGRLLD-LYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 363
+LFSAT T +V L + L K + + P T+ + V + R N + LLS
Sbjct: 181 NLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDR----NHKLALLSH 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K + ++FS TK A++L + + + +HGN +QAQR++AL F+ V
Sbjct: 237 LLHKNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQT 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 297 LIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLL 356
Query: 484 AIAKRAGSKL 493
+I K KL
Sbjct: 357 SIEKLINQKL 366
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 219/376 (58%), Gaps = 7/376 (1%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG S +F ++ ++ L ++CE +G++ PT IQ IP+AL GRD+ G A TGSGKT
Sbjct: 20 DGKS-EGLTFSDIGITSVLCQSCEEMGWTTPTDIQREAIPVALEGRDVIGLAETGSGKTG 78
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AF+LP L+ LL P R+ A L+LTPTRELA Q+ E + ++C +VVGG+
Sbjct: 79 AFSLPILQSLLDTPTRLFA---LVLTPTRELAFQISEQFEALGGRIGVKCAVVVGGVDMM 135
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P +V+ATPGR++DHL N+ L + L++DEADR+L + F E+ ++++
Sbjct: 136 TQALALAKKPHVVIATPGRLVDHLENTKGFSLRSVKYLVMDEADRILNMDFGEEVDKILK 195
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357
+ + R+T L+SAT+T+ V +L + SL P+++ + L + + I +
Sbjct: 196 VLSRERRTYLYSATMTKKVQKLQRASLHNPIKVEVSTKYQTVDKLQQSYIFIPSK---YK 252
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+ L+S+ ++ + ++F T R ++ L A L+G + Q +RL AL F+
Sbjct: 253 DCYLVSILNEFAGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFK 312
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+ LIATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G A+TFVT
Sbjct: 313 SKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQY 372
Query: 478 DRSLLKAIAKRAGSKL 493
D L + I G KL
Sbjct: 373 DVELYQRIESLIGKKL 388
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 233/399 (58%), Gaps = 18/399 (4%)
Query: 101 EDDFSNAGDTKSFF----APADGASFH-ANSFMELNLSRPLLRACEALGYSKPTPIQAAC 155
+D N D++ +PA H A F + L+ +LRA GY PTPIQA
Sbjct: 7 QDLLKNMSDSQPVIQPTTSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEA 66
Query: 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYR------PKRIPAIRVLILTPTRELA 209
IP+ L G D+ G+A TG+GKTA F+LP ++ L+ P R P +R LILTPTRELA
Sbjct: 67 IPVVLQGIDVMGAAQTGTGKTAGFSLPIIQLLMAHANSSASPARHP-VRALILTPTRELA 125
Query: 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL 269
QV ++ ++ T +R +V GG+ Q ALRS +IV+ATPGR++DH++ +++L
Sbjct: 126 DQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQK-TLNL 184
Query: 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLR 329
+L++DEADR+L++GF ++ ++ L PK+RQ ++FSAT + ++ +L L P+
Sbjct: 185 SQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVT 244
Query: 330 LSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388
+ R + E V +I ++ E ++ + + + +VI+FS TK A RL
Sbjct: 245 IEV----ARSNATAENVTQIVYKVEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASRLAR 300
Query: 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448
+KA+ +HG+ +QA+R+ ALE F+ ++ L+ATDVAARGLDI + VINY P
Sbjct: 301 QLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLP 360
Query: 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487
+ YVHR+GRT RAG G A++ +D D LL I K
Sbjct: 361 YNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDIEK 399
>gi|398999282|ref|ZP_10702030.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398132217|gb|EJM21499.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 448
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 225/382 (58%), Gaps = 18/382 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LNL LL+A LGYS PT +Q IPLAL G D+ A TG+GKTAAF LP L+
Sbjct: 2 SFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 186 RLLYRP--------------KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
RL+ P K IR LILTPTRELA QV I A++T+I+ +
Sbjct: 62 RLMTLPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAY 121
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GG S +Q AL + +I+VATPGR++DH+ N SV L ++ +LDEADR+L++GF +
Sbjct: 122 GGTSMNVQVKALNAGAEILVATPGRLLDHVFNG-SVSLSEVETFVLDEADRMLDMGFIVD 180
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351
I +++ P RQT+ FSAT ++ V +L LT P + P+ T+ + V + +
Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDK 240
Query: 352 MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLE 411
R+ A L+ S+ + +V++F+ TKQ + +L GL +KA+ ++G+ +Q R
Sbjct: 241 HRKAELLAYLIG--SRNW-RQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297
Query: 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV 471
AL+ F+ L+ATDVAARGLDI ++ V+N+ P YVHR+GRT RAG G+A+
Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357
Query: 472 TFVTDNDRSLLKAIAKRAGSKL 493
T ++ ++ LKAI + S+L
Sbjct: 358 TLMSLDEEWALKAIEELLDSRL 379
>gi|392556514|ref|ZP_10303651.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 465
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 217/366 (59%), Gaps = 5/366 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS+ L+ A GY PTPIQA IP + RD+ +A TG+GKTA F LP +E
Sbjct: 2 SFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL K + +R LILTPTRELA+QV +E+ A+ +++ +V GG+ Q LR
Sbjct: 62 RLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L N +V D + VL+LDEADR+L++GF +I L+ P++RQ
Sbjct: 122 KGVDILVATPGRLID-LHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT ++D+ L K + P+ +S ++T+ V + + R+ A+L L
Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKT---ALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++FS TK A+RL + A +HGN +Q R++ALE F+ V L
Sbjct: 238 IRSNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+ ARGLDI+ + V+NY P YVHR+GRT RAG G+A++FVT +D L
Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357
Query: 485 IAKRAG 490
I + G
Sbjct: 358 IERFIG 363
>gi|378776210|ref|YP_005184640.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507017|gb|AEW50541.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 420
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L PL RA LGY+ PT IQ IPL L G D+ GSA TG+GKTA+F LP L+
Sbjct: 8 SFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQ 67
Query: 186 RLLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ + + P ++VLILTPTRELA+QVH I + ++ +R ++ GG+ + Q L
Sbjct: 68 KASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLD 127
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S +I+VATPGR++D L +V D++ L+LDEADR+L++GF +I ++++L P +RQ
Sbjct: 128 SGLEILVATPGRLLD-LYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQ 186
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS- 363
+LFSAT T +V L + L K + + P T+ + V + R N + LLS
Sbjct: 187 NLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDR----NHKLALLSH 242
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L K + ++FS TK A++L + + + +HGN +QAQR++AL F+ V
Sbjct: 243 LLHKNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQT 302
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+AARG+DI + V+N+ P YVHR+GRT RAG G AV+ V+ + LL
Sbjct: 303 LIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLL 362
Query: 484 AIAKRAGSKL 493
+I K KL
Sbjct: 363 SIEKLINQKL 372
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 215/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L
Sbjct: 70 TWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 129
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L
Sbjct: 130 ALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK 186
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 187 KPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 246
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 247 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNEL 306
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T + ++ L A LHG ++Q +RL AL F+ ++ L
Sbjct: 307 SGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L +
Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 422
Query: 485 IAKRAGSKL 493
I G +L
Sbjct: 423 IEHLLGKQL 431
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/388 (39%), Positives = 234/388 (60%), Gaps = 17/388 (4%)
Query: 106 NAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
NA + S P D +F + L+ +LRA GY+ PTPIQA IP+ L+GRD+
Sbjct: 88 NATMSDSVAKPVDA------TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDV 141
Query: 166 CGSAITGSGKTAAFALPTLERLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKI 219
G+A TG+GKTA+F+LP ++RLL + P R P +R LILTPTRELA QV + +
Sbjct: 142 MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAY 200
Query: 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279
A+ T +R +V GG+ Q LR +I++ATPGR++DH++ + +L + +L+LDE
Sbjct: 201 AKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDE 259
Query: 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP 339
ADR+L++GF ++ ++ L PK RQT+LFSAT + ++ +L L P + S
Sbjct: 260 ADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAA 319
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
ST+T+ V + E +++A ++ L +VI+F +K A RL + AA
Sbjct: 320 STVTQIVYDVA---EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAA 376
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
+HG+ +Q++R++AL+ F++ ++ L+ATDVAARGLDI + VIN+ P + YVHR+G
Sbjct: 377 IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIG 436
Query: 460 RTARAGREGYAVTFVTDNDRSLLKAIAK 487
RT RAG G A++ + N+R L I K
Sbjct: 437 RTGRAGASGDALSLCSPNERKQLADIEK 464
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 229/397 (57%), Gaps = 16/397 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN+S P++++ E +G+ + TPIQ+ IPLAL G D+ G A TG+GKTAAF +P LE
Sbjct: 3 TFNELNISSPIMKSLEKMGFEEATPIQSETIPLALAGHDVIGQAQTGTGKTAAFGIPMLE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ +++ L++ PTRELA+QV + ++ +F +R V GG Q +L+
Sbjct: 63 KVDTSARKVQG---LVVAPTRELAIQVAEELNRLGRFKGVRVLPVYGGAPMDRQIRSLKD 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DH R ++ D + ++LDEAD +L +GF +I E+++ P RQT
Sbjct: 120 GPQIVVATPGRLLDHFRRR-TIRADIVNTVVLDEADEMLNMGFIDDIREILKQVPSERQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ +++ ++ + P + + ++ V I + + LL +
Sbjct: 179 LLFSATMPKEIRDIATNLMNSPKEVKVKAKEMTVENIDQQFVEIPEKYKFDTLTNLLDMQ 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ I+FS TK+ + ++ +HG+LTQ +R+ L F+ VD L+
Sbjct: 239 NPEL---AIVFSRTKKRVDEITEGLQARGFRSEGIHGDLTQGKRMSVLNKFKNGRVDVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAGR G A++F+T + + L+ I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGEAISFITPREMAHLRLI 355
Query: 486 AKRAGSKLKSRI--------VAEQSITKWSKIIEQME 514
K SK+K + + +Q IT KI+ +E
Sbjct: 356 EKVTKSKMKRMVPPTNKEARIGQQQIT-VEKILATIE 391
>gi|418063902|ref|ZP_12701506.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373556194|gb|EHP82728.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 417
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 6/369 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L++P+LRA E GY PTPIQA +P A+ GRD+CG A TG+GKTAAFALP L R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +R P RVL+L+PTRELA Q+ + +V GG++ QE A+
Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+ID L + ++ L+ + +L+LDEAD++L+LGF + +V++ P +RQ
Sbjct: 124 PGVDILVATPGRLID-LVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT+ +++ L L+ P++++ P A + ++V+ ++A+L +
Sbjct: 183 SLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTG---AKQALLNHV 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+V++F+ TK A R+ A++ +A +HGN +Q QR AL FR L
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSYRVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+D+ GV V+NY P SYVHR+GRTARAG EG A++F D +R+ L+
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359
Query: 485 IAKRAGSKL 493
I + K+
Sbjct: 360 IERTTRQKI 368
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 229/385 (59%), Gaps = 12/385 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL +S P+LRA +G+ +PTPIQ IP+A++G D+ G A TG+GKTAAF +P LE+
Sbjct: 5 FEELQISEPILRALNDMGFEEPTPIQKEAIPVAMSGLDMIGQAQTGTGKTAAFGIPALEQ 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + A++VLIL+PTRELA+QV + K+AQ T I+ + GG + Q +LR
Sbjct: 65 V---DEHLRAVQVLILSPTRELAIQVAEELNKMAQHTHIQALPIYGGQDIQRQFRSLRKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ S++ D++ V++LDEAD +L +GF +I++++ P++RQT+
Sbjct: 122 PQIIVATPGRLMDHMERG-SINFDNVKVIVLDEADEMLNMGFIDDINKILAAVPEQRQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + L + L +P + P+ + + + ++ ++ + LL + +
Sbjct: 181 LFSATMPPAIQTLAENYLKEPRLIRMKPTQVTMDLIEQYYIEVQDRQKFDLLCRLLDMQA 240
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
I+F TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 241 PELA---IVFGRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SYVHRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGKAGMANTFVIPREMEHLHAI- 356
Query: 487 KRAGSKLKSRIVAEQSITKWSKIIE 511
+L R +A + +++E
Sbjct: 357 ----ERLTKRKIARRKAPSLGEVLE 377
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 226/377 (59%), Gaps = 13/377 (3%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A +F + L +L+A GY+ PTPIQA +P+ + GRD+ G+A TG+GKTAAF LP
Sbjct: 11 APTFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPI 70
Query: 184 LERLLY------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
L RL+ P R P +R LILTPTRELA QV + A+FT +R +V GG+
Sbjct: 71 LHRLMQFANTSASPARHP-VRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIG 129
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q ALR +I++ATPGR++DH+ +V+L + +L+LDEADR+L++GF ++ +VR
Sbjct: 130 PQRDALRRGCEILIATPGRLLDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLDRIVR 188
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MREVN 356
L P +RQ +LFSAT + ++ +L + L+ P + A R +T + V +I + +
Sbjct: 189 LLPAKRQGLLFSATFSNEIRKLGRSYLSNPAEIEV---AARNAT-ADTVTQIAYPLAGSD 244
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+ A ++ L ++VI+FS TK RL +KA +HG+ +Q R++AL+ F
Sbjct: 245 KRAAVVHLVKSRGFNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAF 304
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ ++ L+ATDVAARGLD+ GV VINY P + YVHR+GRT RAG G A+ F T
Sbjct: 305 KAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTP 364
Query: 477 NDRSLLKAIAKRAGSKL 493
+ L I K +K+
Sbjct: 365 EEERYLLDIEKLIKAKI 381
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 233/383 (60%), Gaps = 20/383 (5%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D A +F L +LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA
Sbjct: 8 DQAPAAEQTFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTA 67
Query: 178 AFALPTLERLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231
FALP ++RLL P R P +R L+LTPTRELA QV+ + + A+ TD+R +V
Sbjct: 68 GFALPIIQRLLPLANASASPARHP-VRALMLTPTRELADQVYDNVARYAKHTDLRSTVVF 126
Query: 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291
GG+ Q ALR +I+VATPGR++DH++ SV+L + +L+LDEADR+L++GF +
Sbjct: 127 GGVDMNPQTDALRRGVEILVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPD 185
Query: 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--I 349
+ ++ L P +RQT+LFSAT + ++ +L L +P+ + A+ S T E VR +
Sbjct: 186 LQRIINLLPAQRQTLLFSATFSPEIKKLASSYLKQPVTIEV---AR--SNSTNENVRQVV 240
Query: 350 RRMREVNQEAVLLSL----CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
++++ +++A ++ L ++ + + I+F +K RL + AA +HG+ T
Sbjct: 241 YQVQDGHKQAAVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKT 300
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q +R++ L+ F+ +D L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG
Sbjct: 301 QTERMQTLDGFKNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAG 360
Query: 466 REGYAVT-FVTDNDRSLLKAIAK 487
G A++ FV ND LL I K
Sbjct: 361 ASGDALSIFVPGNDDRLLADIEK 383
>gi|424925048|ref|ZP_18348409.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306208|gb|EJZ60170.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 8/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L ++ A R LIL PTRELA QVH + + A+ +R V GG+S Q L
Sbjct: 62 LLAMEGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID R + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+R
Sbjct: 122 RGGVDVLVATPGRLIDLFRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT ++D+ L L PL + P +T+ + VV + + R + + +
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKR---KPELFVH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K +V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V
Sbjct: 238 LMRKNKWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKLSEVQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L
Sbjct: 297 ILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNML 356
Query: 483 KAI 485
AI
Sbjct: 357 SAI 359
>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 486
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 221/366 (60%), Gaps = 10/366 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L+ PL RA A+GY PTPIQ IP L G+D+ G A TG+GKTAAFALP L+R
Sbjct: 3 FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQR 62
Query: 187 LLYRPK-RIP-AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LL K R P R LIL PTRELA+QV + AQFT I + GG++ Q+ L
Sbjct: 63 LLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKLI 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L ++ L L +LDEADR+L++GF +I ++V + P+ RQ
Sbjct: 123 RGVDVLVATPGRLLD-LIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQ 181
Query: 305 TMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
+ FSAT+ E++ +L L P+R+ P + + +E+ RI + R+ LL
Sbjct: 182 NLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRK----GALLK 237
Query: 364 --LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L KV++F TK A ++ + A +K A +HGN +Q +R EAL F+ + +
Sbjct: 238 ELLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQI 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ V V NY P + ++VHR+GRTARAG+EG A++F + ++ S
Sbjct: 298 RVLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESD 357
Query: 482 LKAIAK 487
L+ I K
Sbjct: 358 LRGIEK 363
>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 [Ciona intestinalis]
Length = 449
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 6/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L + L C+ LG+ KP+ IQ IP+AL G D+ G A TGSGKT AF +P L+
Sbjct: 21 TFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQ 80
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ + + I+ C+VVGG+ Q+ L
Sbjct: 81 ALLENPQRLFA---LVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAK 137
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VVATPGR++DHL + L + L+LDEADR+L + F +E+ ++++ P+ R+T
Sbjct: 138 KPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRT 197
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + +LTKP++ + + L + + + +++ L ++
Sbjct: 198 FLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQYYL---FLPSKDKDCYLAAVV 254
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IIF GT R ++ + A LHG ++QA+RL AL F+ L+
Sbjct: 255 NELAGNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILV 314
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VIN P Y+HRVGRTARAGR G +VTFVT D L + I
Sbjct: 315 ATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRI 374
Query: 486 AKRAGSKL 493
+ G KL
Sbjct: 375 EELIGKKL 382
>gi|398852711|ref|ZP_10609359.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398243285|gb|EJN28876.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 445
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 8/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLLR+ E LGY PTP+QA IP L GRD+ +A TG+GKTA FALP L+
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L ++ A R LIL PTRELA QVH + + A+ +R V GG+S Q L
Sbjct: 62 LLSMEGPKVAANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMKL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID R + ++ LD L L+LDEADR+L+LGFS E+ + R+ PK+R
Sbjct: 122 RGGVDVLVATPGRLIDLFRQN-ALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT ++D+ L L PL + P +T+ + +V + + R+ + +
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWIVTVDKKRKAE---LFVH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K +V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V
Sbjct: 238 LMRKNKWKQVLVFAKTRNGVDALVEKLQGLG-VNADGIHGDKPQATRQRALDRFKLSEVQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI + VIN+ P Y+HR+GRT RAG G A++ V ++ ++L
Sbjct: 297 ILVATDVAARGLDIEDLPLVINFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNML 356
Query: 483 KAI 485
AI
Sbjct: 357 SAI 359
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 215/359 (59%), Gaps = 8/359 (2%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L AC+ L ++ PT +Q IPLAL GRD+ G A TGSGKTAAFALP L+ LL P+R+
Sbjct: 73 LCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQRLF 132
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + I+ ++VGG+ Q L P ++VATPG
Sbjct: 133 A---LVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIVATPG 189
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ L L L++DEADR+L++ F +E+++++++ P+ R+T LFSAT+T+
Sbjct: 190 RLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSATMTKK 249
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSLCSKTFTSKVI 374
V +L + SL P+++ + L + + I ++ ++ +L + K+ I
Sbjct: 250 VTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKS----CI 305
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F+ T + R +L A LHG ++QA+RL AL F+ + LIATDVA+RGL
Sbjct: 306 VFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGL 365
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
DI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I G +L
Sbjct: 366 DIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGKQL 424
>gi|452748745|ref|ZP_21948520.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
gi|452007165|gb|EMD99422.1| DEAD/DEAH box helicase [Pseudomonas stutzeri NF13]
Length = 605
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 218/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
L Y PK+ RVL+LTPTRELA QVH + A+ ++ ++ GG+
Sbjct: 62 LLFPGGHPDREHRYGPKQP---RVLVLTPTRELAAQVHDSFKIYARDLPLKSAVIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQAVAKGLDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAAKLLHNPERIEVTP----PNTTVERIEQRVFRVAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAI 485
++ LLK I
Sbjct: 354 APDEEKLLKGI 364
>gi|398941979|ref|ZP_10670072.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|398161344|gb|EJM49580.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 448
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ AQFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTIKEVERFAQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVEECTNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E++ L P L + + +T ++++ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMVAKVLNNPEHLQLNNVSDLNATTRQQIITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG+ Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++
Sbjct: 299 ATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSV 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 230/414 (55%), Gaps = 10/414 (2%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
D + A +F L L+ L ACE LG+ P+ IQ +P+A RDI G A TGSGKT
Sbjct: 3 DNQTEQAVTFKSLGLNDALCEACEKLGWKNPSKIQCEALPIAFQKRDIIGLAETGSGKTG 62
Query: 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
AFALP L+ LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+
Sbjct: 63 AFALPILQALLATPQRLFA---LVLTPTRELAYQISEQFEALGSSIGVKCAVIVGGMDMM 119
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297
Q AL P IV+ATPGR++DHL N+ L + L++DEADR+L + F ++ ++++
Sbjct: 120 SQSIALAKKPHIVIATPGRLVDHLENTKGFSLRSIQYLVMDEADRILNMDFEVDLDKILK 179
Query: 298 LCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMRE 354
+ P R T L+SAT+T+ V +L + SL P+++ L + + I + ++
Sbjct: 180 ILPPSSTRSTYLYSATMTKKVAKLQRASLRDPIKIEVSDKYATVDKLQQTYLFIPSKFKD 239
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
V ++L + K+ +I+F+ T RL +L LHG ++Q +RL AL
Sbjct: 240 VYLVSILNDMSGKS----IIVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALN 295
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ + LIATDVA+RGLDI V VINY P Y+HRVGRTARAGR G ++TFV
Sbjct: 296 KFKGKARSILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFV 355
Query: 475 TDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREER 528
T D L + I G +L + E + + + + + Q ++E +ER
Sbjct: 356 TQYDIELYQRIEFLIGKQLPQYVTQEDEVMTLLERVNEADRQARIQMKEIEDER 409
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 228/374 (60%), Gaps = 15/374 (4%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A GY+ P+PIQ IP L G+D+ SA TG+GKTA F LP L+
Sbjct: 2 SFNSLGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQ 61
Query: 186 ------RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
L +RP IR LILTPTRELA Q+ + I++ ++F D+R ++ GG++ K Q
Sbjct: 62 ILAEGKHLSHRP-----IRALILTPTRELAAQILANIKEYSEFLDLRSTVIFGGVNQKPQ 116
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR DI+VATPGR+ID L+N + L + +L+LDEADR+L++GF +I ++++
Sbjct: 117 VAQLRQGIDILVATPGRLID-LQNQGLITLSKVEILVLDEADRMLDMGFLRDIERIMKVL 175
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ ++FSAT ++D+ +L L KP+++ A P +T++V + + ++
Sbjct: 176 PVKRQNLMFSATFSKDIKKLAMGILHKPVQVEATPENTTVDAITQKVYPVAKEKKTE--- 232
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+++ L ++ ++++F+ TKQ A++L A ++AA +HGN Q R +AL F+
Sbjct: 233 LIIKLITEGNWKQILVFTRTKQGANKLTESMISAGIQAAAIHGNKGQGARTKALAGFKNG 292
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++ + ++
Sbjct: 293 SLTALVATDIAARGLDIPLLPHVVNFELPNIPEDYVHRIGRTGRAGANGEAISLFSPDET 352
Query: 480 SLLKAIAKRAGSKL 493
L+ I K G KL
Sbjct: 353 VFLRDIEKLIGMKL 366
>gi|395500069|ref|ZP_10431648.1| DEAD/DEAH box helicase [Pseudomonas sp. PAMC 25886]
Length = 448
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 223/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGRMI+ L N+ ++DL ++ VL+LDEADR+L++GF+ ++ LV+ C R+QTM
Sbjct: 122 PDILIGTPGRMIEQL-NAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVQECVNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + +++ L P L + + ST ++++ V++E +L L
Sbjct: 181 LFSATTGGSTLRDMVAKVLNNPEHLQVNNVSDLNSTTRQQIITAD--HNVHKEQILNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K I+F+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ + VIN+ PR YVHR+GRT RAG +G A++ + D +L+ +I
Sbjct: 299 ATDVAARGLDVDSLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 229/368 (62%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI+ + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
Max13]
gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
K40]
gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422297602|ref|ZP_16385235.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
gi|422658705|ref|ZP_16721137.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|407990944|gb|EKG32917.1| ATP-dependent RNA helicase SrmB [Pseudomonas avellanae BPIC 631]
Length = 445
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+
Sbjct: 65 VDGSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIAKR 367
>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
Length = 457
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 223/367 (60%), Gaps = 11/367 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L L+ +LRA LGY PTPIQ IP L G D+ SA TG+GKTA F LP L+
Sbjct: 10 SFSDLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQ 69
Query: 186 RLLYRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
+L+ P+ R P IR LILTPTRELA QV +++ ++ +IR +V GG+S Q
Sbjct: 70 KLVDAPRSGNNRRP-IRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMM 128
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LRS D+++ATPGR++D L + +VDL + +L+LDEADR+L++GF +I ++ PK
Sbjct: 129 KLRSGVDVLIATPGRLLD-LEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPK 187
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+RQ +LFSAT ++D+ +L L P+ + P ++ +E+V + + + ++A L
Sbjct: 188 KRQNLLFSATFSDDIKQLASKLLNNPVSIEVAPR----NSASEQVTQYVHLVDKKRKAEL 243
Query: 362 LS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LS + + +V++F+ TK A+RL +K+A +HGN +Q R AL F+
Sbjct: 244 LSFMIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGD 303
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATD+AARGLDI + V+N+ P YVHR+GRT RA G A++ V ++
Sbjct: 304 IRVLVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVK 363
Query: 481 LLKAIAK 487
LLK I K
Sbjct: 364 LLKDIEK 370
>gi|387824537|ref|YP_005824008.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
Length = 445
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 215/350 (61%), Gaps = 5/350 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L+ + A E GY+KPTPIQA IPL L G D+ SA TG+GKTA F LP ++R
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQR 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL +PK + I+ LILTPTRELA Q+ I+ A T IR +V GG+S Q LR
Sbjct: 63 LLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
+I++ATPGR++D L + ++ D L +LDEADR+L++GF ++ ++ +L PK+ QT
Sbjct: 123 GVEILIATPGRLLD-LYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQT 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
++FSAT + ++ L L P +SAD +T+++ + + ++N L+SL
Sbjct: 182 LMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKIN---ALISLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+V++FS TK A+++ A + ++ +HGN +Q R +AL F+ + ++ L+
Sbjct: 239 KDQDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
ATD+AARG+DI + VIN P YVHR+GRT RAG++G A++ V+
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVS 348
>gi|422616661|ref|ZP_16685366.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
Length = 445
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 409
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 218/368 (59%), Gaps = 8/368 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS P+LR A GY+ PTPIQ IP+ L G D+ GSA TG+GKTAAFALP L R
Sbjct: 3 FKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTR 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L R P RVL+L PTRELA QV + A+FTD+R V GG+ +Q T L+
Sbjct: 63 LGAHAARAP--RVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRG 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
D++VATPGR++D+L + +++L + +L+LDE DR+L++GF + ++++ CP++RQT+
Sbjct: 121 VDVIVATPGRLMDYLHDR-TINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTL 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL-SLC 365
FSAT+ ++ + +L P R+ + ++ E V +Q+ LL +L
Sbjct: 180 FFSATVPPEIQAVASFALRNPTRVEVGVN----RSVNESVKHALYPVAADQKFELLEALL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++T V++FS TK A ++ A A LH N +Q QR+EAL F+ + ++
Sbjct: 236 ARTDFDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ GV VINY P YVHR+GRT RA G A T VT + ++ I
Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDI 355
Query: 486 AKRAGSKL 493
+ G K+
Sbjct: 356 ERFIGQKI 363
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 218/362 (60%), Gaps = 6/362 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L LLRA +A GY+ PTPIQ IP AL G+D+ G A TG+GKTAAFALP L+
Sbjct: 2 TFDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 186 RLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
RL + P +R L+LTPTRELA QV + +R ++ GG+ Q AL
Sbjct: 62 RLSAKAPPGGARPVRCLVLTPTRELAGQVGESFATYGKNLPLRHTVIFGGVGQNPQVQAL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ D++VATPGR++D L V L L V +LDEADR+L++GF ++ +++ P +R
Sbjct: 122 QRGVDVLVATPGRLLD-LMEQGCVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPSKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSATL D+ +L + LT P+R+ P++ T++++V + R + + +L
Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPVRVEVTPASSTAETVSQQVYFVEREQ---KRGLLTH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + S+ ++F+ TK A+R+ A + +A +HGN +Q R AL+ FR +
Sbjct: 238 LLKEGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI G+ V+NY P YVHR+GRT RAG G AV+F +R+ L+
Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLR 357
Query: 484 AI 485
I
Sbjct: 358 DI 359
>gi|66047019|ref|YP_236860.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|422673345|ref|ZP_16732705.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|424068921|ref|ZP_17806369.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440722920|ref|ZP_20903290.1| helicase [Pseudomonas syringae BRIP34876]
gi|440727353|ref|ZP_20907589.1| helicase [Pseudomonas syringae BRIP34881]
gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Pseudomonas syringae pv. syringae B728a]
gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
str. M302273]
gi|407996030|gb|EKG36527.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440360496|gb|ELP97768.1| helicase [Pseudomonas syringae BRIP34876]
gi|440364118|gb|ELQ01258.1| helicase [Pseudomonas syringae BRIP34881]
Length = 445
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 227/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANSSASPARHP-VRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK+RQT+LFSAT + ++ +L L+ P + S + +T+ V I E +++A
Sbjct: 190 PKQRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + A +HG+ +Q +R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
V+ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 225/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L+ P+L+A GY+KPTPIQA IP+ L GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 103 RLLPLASTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQ 161
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ S L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 162 TAELRRGVEILIATPGRLLDHVQQK-STSLAQVQMLVLDEADRMLDMGFLPDLQRILNLL 220
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQT+LFSAT + ++ +L L P+ + S S + + V + E +++A
Sbjct: 221 PSQRQTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVA---EPDKQA 277
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L + +VI+F +K A RL + A +HG+ +Q++R++AL+ F++
Sbjct: 278 AVVQLIRQRELKQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRG 337
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 338 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNER 397
Query: 480 SLLKAIAK 487
L I K
Sbjct: 398 KQLADIEK 405
>gi|390351278|ref|XP_786173.3| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Strongylocentrotus purpuratus]
Length = 428
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 213/358 (59%), Gaps = 6/358 (1%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
L AC+ L + P+ IQ +P+AL G+D+ G A TGSGKT AFALP L+ LL P+R+
Sbjct: 10 LCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLETPQRLF 69
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
A L+LTPTRELA Q+ E + + C ++VGG+ Q L P +++ATPG
Sbjct: 70 A---LVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIATPG 126
Query: 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTED 315
R++DHL N+ +L L L++DEADR+L + F AEI +++++ PK+R+T L+SAT+T+
Sbjct: 127 RLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSATMTKK 186
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVII 375
V +L + SL P+++ + S L + + I ++ L+S+ ++ + ++
Sbjct: 187 VAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFI---PAKYKDCYLVSILNEFAGNSFMV 243
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F T R+ +L L A LHG L+Q++RL L F+ + LIATDVA+RGLD
Sbjct: 244 FCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRGLD 303
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
I V VIN+ P Y+HRVGRTARAGR G A+TFVT D L + I + KL
Sbjct: 304 IPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKKL 361
>gi|395490699|ref|ZP_10422278.1| DEAD/DEAH box helicase [Sphingomonas sp. PAMC 26617]
Length = 485
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 216/364 (59%), Gaps = 6/364 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L+ PL+RA EA GY+ PTPIQA IP+ L GRD+ G A TG+GKTAAF LP+++
Sbjct: 7 SFAHLGLAEPLVRALEAKGYTSPTPIQAQSIPMLLEGRDLLGIAQTGTGKTAAFVLPSIQ 66
Query: 186 RLLYRPKRI-PA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
RL+ KR+ P R+L+L PTRELA Q+ A+F+ + V GG S +
Sbjct: 67 RLVAADKRVLPTHCRMLVLAPTRELASQIADSARDYAKFSKMTVATVFGGTSINKNRQDM 126
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D + M V L L +L+LDEAD++L+LGF + ++V++ P+ R
Sbjct: 127 SRGVDILVATPGRLLDLIEQRM-VSLAMLEILVLDEADQMLDLGFIHALRKIVKMLPRVR 185
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + EL L P + P + + + V + + ++A+L
Sbjct: 186 QTLFFSATMPNAIRELADQFLNDPATVKVAPVSSTAERVEQYVYFVN---QGEKQALLTM 242
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + + ++F+ TK A R+ L G + A +HGN +Q QR AL F+ V
Sbjct: 243 LLADGAIERCLVFTRTKHGADRVVKLLGANGIPANAIHGNKSQPQRERALGEFKTGKVKV 302
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ GV V N+ P YVHR+GRTARAG G A++F D++RS L+
Sbjct: 303 LVATDIAARGIDVSGVSHVFNFELPNVAEQYVHRIGRTARAGASGIAISFCADDERSYLR 362
Query: 484 AIAK 487
I K
Sbjct: 363 DIEK 366
>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
642]
gi|443642767|ref|ZP_21126617.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
gi|443282784|gb|ELS41789.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
B64]
Length = 445
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYKKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 214/369 (57%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L+ L +AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L
Sbjct: 72 TWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 131
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A L+LTPTRELA Q+ E + I+CC+VVGG+ Q L
Sbjct: 132 ALLENPQRFFA---LVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAK 188
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N +L + L++DEADR+L + F E+ +++++ P+ R+T
Sbjct: 189 KPHIIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 248
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSL 364
LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 249 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNEL 308
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF T + ++ L A LHG ++Q +RL AL F+ + L
Sbjct: 309 AGNSF----MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSIL 364
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+T V+ D L +
Sbjct: 365 ISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 424
Query: 485 IAKRAGSKL 493
I G +L
Sbjct: 425 IEHLLGKQL 433
>gi|416015105|ref|ZP_11562765.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028719|ref|ZP_11571636.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404416|ref|ZP_16481469.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 445
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|158514834|sp|A3LS22.3|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 484
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 223/400 (55%), Gaps = 12/400 (3%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
E+ KPE N + P D F ++F EL L LL A + + +SKPTPIQ+
Sbjct: 46 EESKPESSQKSKNIVEVN----PDDEVKF--STFSELKLVPELLEAIQQMKFSKPTPIQS 99
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
IP AL G+DI G A TGSGKTAAFA+P L+ L + P L+L P RELA Q+
Sbjct: 100 EAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW--EAQTPYFG-LVLAPARELAYQIK 156
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273
+ + +R +VGG+ Q L P I++ATPGR++DHL ++ L L
Sbjct: 157 ETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLK 216
Query: 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333
++DEAD+LL+L F + ++++ P +R T LFSAT+T +++L + SL P+R++
Sbjct: 217 YFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLHNPVRVAVS 276
Query: 334 PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA 393
+ L + ++ + + + L+ L ++ +IIF+ T+ R IL +
Sbjct: 277 SKYQTADNLIQSMMLV---SDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRIL 333
Query: 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTS 453
A LHG+LTQAQRL +L F+ + LIATDVAARGLDI V VINY P D +
Sbjct: 334 GFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKA 393
Query: 454 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
YVHRVGRTARAGR G +++ VT D + I + KL
Sbjct: 394 YVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKL 433
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 215/368 (58%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS L+ ACE LG+ P IQ IPLAL G+D+ G A TGSGKT AFALP L
Sbjct: 10 TFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILH 69
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P R +L+PTRELA+Q+ E + ++C ++VGG+ Q +
Sbjct: 70 ALLEAP-RPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAK 128
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR+IDHL+++ L L L+LDEADRLL F ++E++++ P+ R+T
Sbjct: 129 QPHIIVGTPGRVIDHLKHTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRT 188
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T+ V +L ++ L P+++ A TL ++ R + +++ L+ +
Sbjct: 189 FLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQY---RFLPAKHKDCYLVYIL 245
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ S ++F+ T A L ++ LKA ++G+++Q++RL AL F+ + L+
Sbjct: 246 TEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILL 305
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
TDVA+RGLDI V VINY P + Y+HRVGRTARAGR G A++ V + I
Sbjct: 306 CTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQI 365
Query: 486 AKRAGSKL 493
K G KL
Sbjct: 366 EKLIGKKL 373
>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584568|ref|ZP_16659674.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422598398|ref|ZP_16672660.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422680932|ref|ZP_16739203.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 445
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+
Sbjct: 65 VDGSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIAKR 367
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 214/370 (57%), Gaps = 8/370 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F EL + L AC L + P+ IQ IP+AL G+DI G A TGSGKT AFALP L
Sbjct: 37 GTFQELGVVDVLCEACAELKWKHPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPIL 96
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ LL P+R A LILTPTRELA Q+ E + ++C ++VGG+ Q L
Sbjct: 97 QALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILS 153
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+
Sbjct: 154 KKPHIIIATPGRLVDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILRVIPRERR 213
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLS 363
T LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L
Sbjct: 214 TYLFSATMTKKVQKLQRASLQDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNE 273
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L +F I+F T A R+ +L + A LHG ++Q +RL AL F+ +
Sbjct: 274 LAGNSF----IVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALNKFKSKARSV 329
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LI TDVA+RGLDI V V+N P Y+HRVGRTARAGR G A+TFV+ D L +
Sbjct: 330 LICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAITFVSQYDVELYQ 389
Query: 484 AIAKRAGSKL 493
I + G +L
Sbjct: 390 RIEQLIGKQL 399
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+
Sbjct: 65 VDGSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIAKR 367
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|395797811|ref|ZP_10477099.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421141916|ref|ZP_15601895.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395338179|gb|EJF70032.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506936|gb|EKA20927.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 445
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 219/363 (60%), Gaps = 8/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLLRA E LGY PTP+QA IP L GRD+ +A TG+GKTA FA+P L+
Sbjct: 2 TFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQ 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L ++ A +R LIL PTRELA QVH+ + + AQ + V GG+S Q L
Sbjct: 62 LLTMEGPKVSANSVRALILCPTRELAEQVHASVAEYAQNVPLTTYAVYGGVSINPQMMKL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID R + ++ L+ L L+LDEADR+L+LGFS E+ + R+ PK+R
Sbjct: 122 RKGVDVLVATPGRLIDLFRQN-ALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT ++++ +L L PL + P +T+ + VV + + R+ + +
Sbjct: 181 QTLLFSATFSDEIRQLAGQMLNDPLTVEVSPRNVAANTVKQWVVPVDKKRKAE---LFVH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K +V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKSSDVQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L
Sbjct: 297 ILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNML 356
Query: 483 KAI 485
AI
Sbjct: 357 SAI 359
>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
Length = 374
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 224/370 (60%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++
Sbjct: 2 TFKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQ 61
Query: 186 RLLY--RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L R I+ LILTPTRELA+Q+ I+ ++ T IR ++ GG++ + Q L
Sbjct: 62 HLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R DI+VATPGR++D L + LD + +LDEADR+L++GF +I ++ PK +
Sbjct: 122 RKGIDILVATPGRLLD-LMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + + L K L P+++ P + ++ ++VV +E +Q +L+S
Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSI-KQVVYFVEKKEKSQ--LLIS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ SK V+IFS TK A ++ + G A + + +HGN +QA R AL F+
Sbjct: 238 ILSKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+A+RG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+
Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|424073352|ref|ZP_17810770.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407996213|gb|EKG36696.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 445
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDMRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|423015941|ref|ZP_17006662.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
gi|338781000|gb|EGP45396.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
Length = 457
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 215/346 (62%), Gaps = 12/346 (3%)
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL------YRPKRIPAI 197
GY+ PTPIQA IP+ + GRD+ G+A TG+GKTAAF LP L RL+ P R P +
Sbjct: 8 GYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHP-V 66
Query: 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM 257
R LILTPTRELA QV+ +++ ++ T +R +V GG+ Q+ ALR +++VATPGR+
Sbjct: 67 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 126
Query: 258 IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317
+DH+ +V+L + +L+LDEADR+L++GF ++ ++RL P +RQ +LFSAT + ++
Sbjct: 127 LDHVEQK-NVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIR 185
Query: 318 ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFS 377
+L + L +P+ + +T+T+ + M + A ++ L +VI+FS
Sbjct: 186 KLGRSYLNQPVEIEVAARNATANTITQIAYK---MSGDQKRAAVVHLVKSRGLKQVIVFS 242
Query: 378 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437
TK RL +KA +HG+ TQA R++ALE F+ ++ L+ATDVAARGLD+
Sbjct: 243 NTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDVA 302
Query: 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTDNDRSLL 482
GV VINY P + YVHR+GRT RAG G A+ F D +R LL
Sbjct: 303 GVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTGDEERFLL 348
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 223/372 (59%), Gaps = 7/372 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL+A + GY KP+PIQ IP L G+D+ G A TG+GKTAAFALP ++
Sbjct: 2 NFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQ 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ RPK + +R LILTPTRELA+Q+H IE+ T I ++ GG+S K Q +
Sbjct: 62 NLMERPKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQS 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
LR DI+VATPGR++D L +DL + + +LDEADR+L++GF ++ ++ L PK+
Sbjct: 122 LRRGIDILVATPGRLLD-LIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKK 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSAT+ +++ L L P+++ P + ST+ + + + N+ +L+
Sbjct: 181 RQTLLFSATMPDEIQALAAKLLHNPVKVEVTPVS---STVDLIETSLYYVDKANKWPLLV 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L S ++F+ TK A R + + AA +HG+ +Q R AL F+ +
Sbjct: 238 HLLEHEDVSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+DI + VIN+ P +YVHR+GRT RAG G A++F +++ +
Sbjct: 298 VLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357
Query: 483 KAIAKRAGSKLK 494
K I K G ++
Sbjct: 358 KDIEKLTGKTIQ 369
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 218/364 (59%), Gaps = 9/364 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELNL+ +L+A GY PTPIQA IP L G D+ G A TG+GKTAAF LP L+R
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLLQR 62
Query: 187 LLYRPK-----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
L P+ + A+R LI+TPTRELA QV + ++ D+ ++ GG+ Q
Sbjct: 63 LSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIE 122
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR DI+VATPGR++DH ++DL + +LILDEADR+L++GF +I +++ L PK
Sbjct: 123 KLRRGVDILVATPGRLLDHASQG-TLDLSQVQILILDEADRMLDMGFIHDIKKVLALVPK 181
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
++QT+LFSAT ++++ EL L PL + P +T+ + + R + ++A+L
Sbjct: 182 QKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSK---KKALL 238
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ ++ S+V++F+ TK A+ + A + A LHGN +Q R +AL+ F+ +
Sbjct: 239 THIINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDI 298
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V+NY P YVHR+GRT RAG G AV+ V ++
Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEGF 358
Query: 482 LKAI 485
++ I
Sbjct: 359 MQDI 362
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+TDI + GG Q AL+
Sbjct: 65 VDGSNRHV---QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ +D+ +++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + EL + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIAKR 367
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/363 (42%), Positives = 222/363 (61%), Gaps = 9/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L A ++ GYS+P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K R +R L+LTPTRELA QVH +Q +R +V GG+ Q LR
Sbjct: 62 LLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L + ++ L +L+LDEADR+L++GF +I +++L PK RQ
Sbjct: 122 RGVDVLVATPGRLLD-LFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQEAVLL 362
T+LFSAT ++D+ EL + + + +S P P+T T EV+R + + + + A L
Sbjct: 181 TLLFSATFSDDIRELAQNVVKDAVEVSVTP----PNT-TVEVIRQSLIPVDKSKKSAALK 235
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L S+V++FS TK A+RL LF A ++AA +HGN +Q R +AL F+ +
Sbjct: 236 FLIQSRDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIR 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+DI + V+N+ P YVHR+GRT RAG G A++ V++++ L
Sbjct: 296 VLVATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQL 355
Query: 483 KAI 485
I
Sbjct: 356 SDI 358
>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 221/387 (57%), Gaps = 15/387 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS L++ C+ LG KPTP+Q C+P L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + +R C+VVGG+ Q + L +
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQ 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKRR 303
P +VVATPGR+ DH+R+S + + + LI+DEADRLLE G F+ ++ ++ P +R
Sbjct: 121 PHVVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSATLT+ + EL +++ KP + + T+ E R E ++A L+
Sbjct: 181 QTLLFSATLTDTLQELKNIAMNKPFFWESKSETR---TVDELDQRYILTPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L +TFT + +IIF+ T + L ++ LH + Q QR L F+
Sbjct: 238 LI-QTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKA 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT D
Sbjct: 297 SVYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITK 505
L+ +I ++ +KLK V E+ + K
Sbjct: 357 IHLVHSIEEQIQTKLKEFPVEEKEVLK 383
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 223/364 (61%), Gaps = 11/364 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF EL L L++A + GY +PTPIQ IP L G+DI A TG+GKT AFALP +E
Sbjct: 2 SFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+L R K R P R L+LTPTRELA+QV I+ A+ +RC +V GG++ Q
Sbjct: 62 -ILARGKAHRRHP--RALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDR 118
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DI+VATPGR++D + V L + L+ DEADR+L+LGFS EI +++ L P+
Sbjct: 119 LKRGVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQD 178
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-RIRRMREVNQEAVL 361
R+TMLFSAT T + +L L P ++ P+ +T+ E +V ++ + + N+ +L
Sbjct: 179 RRTMLFSATYTRQIRDLADKMLKTPEQIEVTPN----TTVAESIVQKVHLVEKSNKRELL 234
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ L +++ +V++F+ TK A++L + AA LHGN +Q+ R L+ F+ +
Sbjct: 235 IHLITRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEI 294
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATDVAARGLDI G+ V+NY P YVHR+GRT RAG +G AV+ V+ ++
Sbjct: 295 RILVATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVF 354
Query: 482 LKAI 485
LK++
Sbjct: 355 LKSV 358
>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
T1]
Length = 453
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 10 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 69
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 70 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 129
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 130 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 188
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 189 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 246
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 247 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 303
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 304 IMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 363
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 364 SSVERYLKQSFERRVIKE 381
>gi|421505460|ref|ZP_15952398.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400343869|gb|EJO92241.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 628
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 221/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA E+ GY++PTP+Q IP L GRD+ +A TG+GKTA FALP LE
Sbjct: 2 SFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPAGHPDREQRHGPRQP---RVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LARLPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L A +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 354 APDEEKLLKSIERMTKQKI 372
>gi|423298414|ref|ZP_17276472.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
gi|392663326|gb|EIY56877.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
Length = 374
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 222/370 (60%), Gaps = 6/370 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELN++ P+L+A E GY+ PTPIQ IP AL RDI G A TG+GKTA+FA+P ++
Sbjct: 2 TFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQ 61
Query: 186 RLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L + + I+ LIL PTRELA+Q+ I A++T +R ++ GG++ + Q L
Sbjct: 62 HLQMNKEAAKCRGIKALILMPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDML 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N + LD + +LDEADR+L++GF +I ++ PK +
Sbjct: 122 HKGIDILVATPGRLLD-LMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + + L L P+R+S P + + E++V +E + +L+S
Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAI-EQMVYFVEKKE--KSLLLVS 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ K+ V++FS TK A ++ + G A + + +HGN +QA R AL F+
Sbjct: 238 ILQKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
++ATD+AARG+DI + VINY P +YVHR+GRT RAG G A+TF + +R L+
Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357
Query: 484 AIAKRAGSKL 493
I K G KL
Sbjct: 358 DIQKLTGKKL 367
>gi|381188780|ref|ZP_09896340.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379649418|gb|EIA07993.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 419
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 7/364 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT--- 183
F EL+LS+ + RA GY+ PTPIQ IPL L G+D+ G A TG+GKTAAFA+P
Sbjct: 3 FEELSLSKSIQRAVYEQGYTNPTPIQEQSIPLVLAGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L R++ K+ IR L++TPTRELAVQ+ + ++T++ + GG+S Q AL
Sbjct: 63 LHRIVGSSKKAKQIRALVVTPTRELAVQIGQSFDTYGKYTNLTQLTIFGGVSQNPQVDAL 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
++ DI++ATPGR++D L +DLD L L+LDEAD++L++GF ++ ++V+L PK R
Sbjct: 123 KNGVDILIATPGRLLD-LHKQGFIDLDHLHCLVLDEADQMLDMGFVNDVKKIVKLTPKNR 181
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + EL ++ LTKP ++ P + + + V + + + N +L +
Sbjct: 182 QTLFFSATMPIAIRELAEMFLTKPETVTVSPVSSTAENVEQRVYFVEKTEKRN---LLYN 238
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + V++FS TK A + + A +HG+ +Q R LE F+ + V
Sbjct: 239 LIKNENLTDVLVFSRTKHGADNVVKALRKNNIAAEAIHGDKSQNARQRVLEAFKNKEVGV 298
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + VIN+ P +YVHR+GRT RAG G A++F + ++ K
Sbjct: 299 LVATDIAARGIDIDQLPYVINFDLPNIPETYVHRIGRTGRAGNGGVAISFCSKDEHGYWK 358
Query: 484 AIAK 487
I K
Sbjct: 359 DIQK 362
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 218/362 (60%), Gaps = 5/362 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS+ LL + L + PTPIQ IP L GRD+ G A TG+GKTAAF LP L R
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 187 LL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L +P RVLIL+PTREL+ Q+ ++ + + +R +VVGG+S + Q L S
Sbjct: 72 LAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLAS 131
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
D+++ATPGR++D L +V L+++ V++LDEAD++L++GF I ++ + P RQT
Sbjct: 132 GVDVLIATPGRLMD-LIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQT 190
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ +++ +L LT P+ +S P+ K + V+ M+ + L SL
Sbjct: 191 LLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVMH---MQPGAKMGALASLI 247
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+VI+F+ TK+ A + + AA +HGN +Q QR AL FR V LI
Sbjct: 248 RDRKGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLI 307
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+D+ GV V+NY P YVHR+GRTARAG EG AVTF ++RSLL+ I
Sbjct: 308 ATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDI 367
Query: 486 AK 487
K
Sbjct: 368 EK 369
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 11/369 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L L+ L RA +GY TPIQA IP+ LTG+D+ G+A TG+GKTAAF+LP L
Sbjct: 3 SSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62
Query: 185 ERLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
+RL+ P R P +R L+L PTRELA QV I + A++T +R +V GG+ K
Sbjct: 63 QRLMRHENTSASPARHP-VRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKP 121
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q L+ +++VATPGR++DH+ +V L+ + ++LDEADR+L++GF ++ ++
Sbjct: 122 QTLELKKGVEVLVATPGRLLDHIEAKNAV-LNQVEYVVLDEADRMLDIGFLPDLQRILSH 180
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
PK R T+LFSAT + ++ L L P+ + + ST+ + R + + ++
Sbjct: 181 LPKTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQ---RFYSVSDDDKR 237
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L SL + + +FS +K RL L+A LHG+ +Q +RL+ALE F++
Sbjct: 238 YALRSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKR 297
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VD L+ TDVAARGLDI V V NY P + YVHR+GRT RAG G AVT VT++D
Sbjct: 298 GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHD 357
Query: 479 RSLLKAIAK 487
L+ I K
Sbjct: 358 ARLVGEIEK 366
>gi|443242157|ref|YP_007375382.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
gi|442799556|gb|AGC75361.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
Length = 425
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 223/365 (61%), Gaps = 8/365 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L P+LRA + GY +PTPIQA IP+ L G+D+ G A TG+GKTAAF++P ++
Sbjct: 2 TFKELGLVEPILRALQDQGYERPTPIQAQAIPVLLEGKDLLGCAQTGTGKTAAFSIPIVQ 61
Query: 186 RLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L R PK I+ L++TPTRELA+Q+ ++TDI+ ++ GG+ Q AL
Sbjct: 62 DLYNRTPPKGKRRIKTLVVTPTRELAIQIGENFTAYTKYTDIKNTVIFGGVKQTSQVYAL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
D++VATPGR++D L N + LD + +LDEAD++L++GF +I +L++L P++R
Sbjct: 122 HQGIDVLVATPGRLLD-LINQRYITLDHIEHFVLDEADQMLDMGFIHDIKKLLKLLPQKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQEAVLL 362
Q++ FSAT+ + +L L P R++ +P T E+V RI + + N+ +L+
Sbjct: 181 QSLFFSATMPSAIVKLSNEILGNPARVTIEPE----KTTAEKVEQRIYHVNKKNKTKLLI 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L S ++FS TK A+++ A +K+A +HGN +QA R AL+ F+ +
Sbjct: 237 DLLSNELNDSTLVFSRTKHGANKIVKDLDKAGIKSAAIHGNKSQAARQRALQQFKDGDLQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LIATD+AARG+DI + V+NY P SYVHR+GRT RAG G AV+F +R L
Sbjct: 297 ALIATDIAARGIDIDELSYVVNYDLPNVPESYVHRIGRTGRAGASGLAVSFCMLEERPFL 356
Query: 483 KAIAK 487
K I K
Sbjct: 357 KDIEK 361
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 11/369 (2%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L L+ L RA +GY TPIQA IP+ LTG+D+ G+A TG+GKTAAF+LP L
Sbjct: 3 SSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62
Query: 185 ERLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
+RL+ P R P +R L+L PTRELA QV I + A++T +R +V GG+ K
Sbjct: 63 QRLMRHENTSASPARHP-VRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKP 121
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q L+ +++VATPGR++DH+ +V L+ + ++LDEADR+L++GF ++ ++
Sbjct: 122 QTLELKKGVEVLVATPGRLLDHIEAKNAV-LNQVEYVVLDEADRMLDIGFLPDLQRILSH 180
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
PK R T+LFSAT + ++ L L P+ + + ST+ + R + + ++
Sbjct: 181 LPKTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQ---RFYSVSDDDKR 237
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L SL + + +FS +K RL L+A LHG+ +Q +RL+ALE F++
Sbjct: 238 YALRSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKR 297
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VD L+ TDVAARGLDI V V NY P + YVHR+GRT RAG G AVT VT++D
Sbjct: 298 GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHD 357
Query: 479 RSLLKAIAK 487
L+ I K
Sbjct: 358 ARLVGEIEK 366
>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
Length = 639
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 215/373 (57%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L RA EA GYS+PT +Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFSSLGLSEALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDREHRHGPRQA---RVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQALAKGVDVLVACPGRLLD-LAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTP----PNTTVERIEQRVFRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 PQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+NY P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLKAI K
Sbjct: 354 APDEEKLLKAIEK 366
>gi|440741996|ref|ZP_20921326.1| helicase [Pseudomonas syringae BRIP39023]
gi|440378082|gb|ELQ14712.1| helicase [Pseudomonas syringae BRIP39023]
Length = 445
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ VIN+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 VMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+
Sbjct: 65 VDGNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ D + V++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIARR 367
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 224/380 (58%), Gaps = 11/380 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L LLRA GY PTPIQA IP+ L GRD+ G A TG+GKTAAF LP L+
Sbjct: 2 SFDTLGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPMLQ 61
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RL + P + P IR L+LTPTRELA+QV I + +R + GG++ Q
Sbjct: 62 RLAPQASTSTSPAKHP-IRALVLTPTRELAMQVEESIRTYGKHIPLRSTTIFGGVNINPQ 120
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
ALR +I+VATPGR++DH + ++ D L +L+LDEADR+L++GF +I +++ L
Sbjct: 121 IAALRKGVEILVATPGRLLDHHQQG-TLRFDQLEILVLDEADRMLDMGFIRDIKKILALL 179
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
P +RQ++LFSAT + ++ EL L P + P + + V + R R + A
Sbjct: 180 PAKRQSLLFSATFSGEIRELAASLLKDPASVDVAPRNSTTELVKQVVHPVDRER---KRA 236
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+L L +V++F+ TK A+RL + A +HGN +Q QR++AL F++
Sbjct: 237 LLAHLIQTKNLEQVLVFTRTKHGANRLAEQLDKDGISALAIHGNKSQPQRIKALSDFKQG 296
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATD+AARGLDI + V+NY P+ YVHR+GRT RAG EG A++ V ++
Sbjct: 297 NIRVLVATDIAARGLDIDQLPHVVNYELPQVPEDYVHRIGRTGRAGSEGEALSLVCVDEH 356
Query: 480 SLLKAIAKRAGSKLKSRIVA 499
LLK I + + L S +VA
Sbjct: 357 KLLKGIERLLKNPLPSEVVA 376
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 217/362 (59%), Gaps = 8/362 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS LL E GY KPTP+QA IP L G D+ G A TG+GKTAAFALP L+
Sbjct: 4 FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63
Query: 187 LLYRPKRIPA---IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL +++P+ +R LIL+PTRELA Q+ + ++ ++ + GG+ Q AL
Sbjct: 64 LLSN-RKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKAL 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
D++V TPGR+IDH+ +VDL + +LDEAD++L+LGF I ++ PK+R
Sbjct: 123 LGGLDVLVCTPGRLIDHIEQK-TVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKR 181
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q + FSAT+ +++ L LT P R+ P A ++++V+ I R + A+L
Sbjct: 182 QNLFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQR---KRALLSE 238
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ + + ++F+ TK++A R+ ++AA +HG+ Q+QR AL+ FR V
Sbjct: 239 MYADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRA 298
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+D+ V VINY P +YVHR+GRTARAG+ G ++T D++R LLK
Sbjct: 299 LVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLK 358
Query: 484 AI 485
I
Sbjct: 359 DI 360
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+
Sbjct: 65 VDGNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ D + V++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIARR 367
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+
Sbjct: 65 VDGNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ D + V++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKIARR 367
>gi|429216159|ref|ZP_19207318.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428153812|gb|EKX00366.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 441
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 222/374 (59%), Gaps = 3/374 (0%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A E L +++PT +QAA IP AL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FAQFALHERLLKALETLSFTEPTAVQAAAIPKALEGRDLRVTAQTGSGKTAAFVLPLLHR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
LL K R LIL PTRELA Q +E+ AQFT I+ CL+ GG K+Q LR
Sbjct: 62 LLSEEKPKTGARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P+I++ TPGR+ + N+ ++ L D+ VL+LDEADR+L++GF+ ++ +L CP +RQT+
Sbjct: 122 PEIIIGTPGRLNEQF-NAGNLPLGDVEVLVLDEADRMLDMGFAEDVLKLAGACPAQRQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT + +++ L +P L + ++ + ++V+ + ++EA+L L
Sbjct: 181 LFSATAGSGLHAMVEQVLREPESLQLNRVSELNEDIAQQVILVD--DNAHKEAILHWLLE 238
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
K I+F+ T+ A RL A K LHG Q R A+E ++ V L+A
Sbjct: 239 NETFDKAIVFTNTRVQADRLTGRLIAAGHKVFVLHGEKDQKDRKLAIERLKQGAVKILVA 298
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLD+ G+ V+N+ PR YVHR+GRT RAG G A++ V+ +D +L+ +I
Sbjct: 299 TDVAARGLDVEGLDLVLNFDMPRRGDEYVHRIGRTGRAGEAGLAISLVSHSDWNLMSSIE 358
Query: 487 KRAGSKLKSRIVAE 500
+ + + R + E
Sbjct: 359 RYLKVRFEQRTIKE 372
>gi|374703254|ref|ZP_09710124.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
S9]
Length = 622
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 220/379 (58%), Gaps = 19/379 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA E+ GY++PTP+Q IP AL GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAVESAGYTQPTPVQQRAIPAALQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + PK+ RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPNGHPDREQRHGPKQP---RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q AL D++VA PGR++D L S+DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQALAKGVDVLVACPGRLLD-LAGQGSIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R++
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLQA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L + +V++F+ TK A+RL L A +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLVTAGAWEQVLVFTRTKHGANRLAEYLDQRGLPAVAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAIAKRAGSKL 493
++ LL+ I + K+
Sbjct: 354 APDEEKLLRGIERMTKQKI 372
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 224/374 (59%), Gaps = 5/374 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LL+A GY P+ IQ IPL L +D+ SA TGSGKTA FALP L+
Sbjct: 2 SFKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQ 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L P R +R LILTPTRELA QV + ++FTD+R ++ GG+ Q ALR
Sbjct: 62 ILNSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTVIFGGVGANPQIKALR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
+ DI+VATPGR++D L N ++ L + +L+LDEADR+L++GF +I +++ L P +RQ
Sbjct: 122 NGVDILVATPGRLLD-LENQNALSLSKVEILVLDEADRMLDMGFLRDIKKILALLPNKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
+LFSAT ++++ +L L P+ + A P + + V R+ + ++ + +++ L
Sbjct: 181 NLLFSATFSKEIKKLANEFLHHPVLVEATPENTTVEKIDQTVYRVDKAQKTD---LIIKL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ +V++F+ TK A+RL A + +A +HGN +Q R AL F++ V L
Sbjct: 238 ISEGNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFKEGKVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + VIN+ P YVHR+GRT RAG G A++ V+ ++ LK
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYLKD 357
Query: 485 IAKRAGSKLKSRIV 498
I K G +L + +
Sbjct: 358 IEKLIGERLVPKTI 371
>gi|402700606|ref|ZP_10848585.1| DEAD/DEAH box helicase [Pseudomonas fragi A22]
Length = 448
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSDFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K +I+ LIL PTRELA Q +E+ +QFT I+ L+ GG K+Q LR +
Sbjct: 62 LIGPAKIRVSIKALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL ++ VL+LDEADR+L++GFS ++ LV CP R+QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECPNRQQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L L + ++ +T ++V+ + ++E ++ L
Sbjct: 181 LFSATTGGSGLREMIGKVLNNAEHLQLNQVSQLNATTRQQVITADHNQ--HKEQIVNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ K IIF+ T+ A R+ KA LHG Q R A++ ++ V L+
Sbjct: 239 ANETYQKAIIFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLD+ G+ VIN+ PR YVHR+GRT RAG +G A++ + D +L+ ++
Sbjct: 299 ATDVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSV 358
Query: 486 AKRAGSKLKSRIVAE 500
+ + R + E
Sbjct: 359 ERYLKQSFERRTIKE 373
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 234/388 (60%), Gaps = 17/388 (4%)
Query: 106 NAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
NA + S P D +F + L+ +L+A GY+ PTPIQA IP+ L+GRD+
Sbjct: 75 NATMSDSVAKPVDA------TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDV 128
Query: 166 CGSAITGSGKTAAFALPTLERLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKI 219
G+A TG+GKTA+F+LP ++RLL + P R P +R LILTPTRELA QV + +
Sbjct: 129 MGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAY 187
Query: 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279
A+ T +R +V GG+ Q LR +I++ATPGR++DH++ + +L + +L+LDE
Sbjct: 188 AKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDE 246
Query: 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP 339
ADR+L++GF ++ ++ L PK RQT+LFSAT + ++ +L L P + S
Sbjct: 247 ADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAA 306
Query: 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399
ST+T+ V + E +++A ++ L +VI+F +K A RL + AA
Sbjct: 307 STVTQIVYDVA---EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAA 363
Query: 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVG 459
+HG+ +Q++R++AL+ F++ ++ L+ATDVAARGLDI + VIN+ P + YVHR+G
Sbjct: 364 IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIG 423
Query: 460 RTARAGREGYAVTFVTDNDRSLLKAIAK 487
RT RAG G A++ + N+R L I K
Sbjct: 424 RTGRAGASGDALSLCSPNERKQLADIEK 451
>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
Length = 417
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 4/368 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L P+ +A + GY++PTPIQA IP L GRD+ G+A TG+GKTAAFA+P L+
Sbjct: 2 NFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + R I+ LILTPTRELA+Q+ + +R +V GG+ QE AL+
Sbjct: 62 NLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALKK 121
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D + + + L +L + +LDEADR+L++GF ++ +++L P +RQT
Sbjct: 122 GVDILVATPGRLLDFISQGI-ISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+ FSAT +++ +L LT P+++ P + T+ ++V + + N+ +L +
Sbjct: 181 LFFSATFPDEISKLANSMLTNPVKVEVAPVSATADTIKQKVYFVEKE---NKLELLTHIL 237
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ V++FS TK A ++ + A +HGN +Q QR AL F+ L+
Sbjct: 238 MNDISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILV 297
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI ++ V+N+ +YVHR+GRT RAG +G +++FV D LK+
Sbjct: 298 ATDIAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKST 357
Query: 486 AKRAGSKL 493
K G K+
Sbjct: 358 EKLIGKKI 365
>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
Length = 454
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 220/379 (58%), Gaps = 3/379 (0%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A+ A++F EL + L+ AC+A+G+ +PT IQA IP AL G+D+ A TGSGKT AF
Sbjct: 19 AARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAF 78
Query: 180 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
ALP L+ LL + + +L+PTRELA+Q+ E + +RC ++VGG+ Q
Sbjct: 79 ALPILQELLSNRQAEQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQ 138
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
++ P IVV TPGR++DHL + L + L+LDEAD+LL + F + +++R
Sbjct: 139 VLSIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREI 198
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK R+T LFSAT+T+ V++L + L P ++ A +L +E + +++
Sbjct: 199 PKDRRTFLFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFV---PADDKDC 255
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
LL + ++ S ++IF T ++ L ++ LKA + G ++Q +RL AL F+ +
Sbjct: 256 YLLHVLNERQDSMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAK 315
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ LI TDVA+RGLDI GV VINY P + YVHRVGRTARAGR GYAV+ V +
Sbjct: 316 DCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEA 375
Query: 480 SLLKAIAKRAGSKLKSRIV 498
I K G ++ R V
Sbjct: 376 QWFVLIEKLLGKQIDQRKV 394
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 218/363 (60%), Gaps = 6/363 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +LNL PL RA GY +PTPIQ IP L G+D+ G A TG+GKTAAF LP L+R
Sbjct: 3 FKDLNLIDPLQRALTKEGYIEPTPIQVQSIPQLLKGKDLIGIAQTGTGKTAAFVLPILQR 62
Query: 187 LLYRPKRI-PAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ + K P RVL+L PTRELA Q+ F + +V GG+S Q ++
Sbjct: 63 MHEKHKHTTPGFPRVLVLAPTRELAAQIGDSFAAYGHFLHFKHTVVFGGVSQVPQFKSIT 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR++D L + V L + +LDEADR+L++GF +++ +V + P +RQ
Sbjct: 123 KGVDILVATPGRLLD-LMDQGIVKLSGVEFFVLDEADRMLDMGFIKDVNRIVSMLPHKRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++ FSAT++ + EL + LT P+R+ P A + ++V + + N++A+LLSL
Sbjct: 182 SLFFSATMSPQISELTRRLLTDPVRVEVTPQATTVERIEQKVFFVD---QENKDALLLSL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + V++F+ TK A+++ + A +HGN +QA R +E FR + L
Sbjct: 239 LQQDHLNCVLVFTRTKHRANKVAQTLNKNRVGADAIHGNKSQAHRTRVMESFRAGELQVL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARG+DI + VINY P + SYVHR+GRTARAG EG A +F ++RS L++
Sbjct: 299 VATDIAARGIDIEDISHVINYDLPNEPESYVHRIGRTARAGAEGTAYSFCAADERSFLRS 358
Query: 485 IAK 487
I K
Sbjct: 359 IEK 361
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|104783960|ref|YP_610458.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
entomophila L48]
Length = 634
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 219/373 (58%), Gaps = 19/373 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPGGHPDKSQRHGPRQP---RVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L SVDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQVQAMAKGVDVLVACPGRLLD-LAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTP----PNTTVERIEQRVYRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L + +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANTVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353
Query: 475 TDNDRSLLKAIAK 487
++ LLK+I +
Sbjct: 354 APDEEKLLKSIER 366
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 217/360 (60%), Gaps = 11/360 (3%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+L+ PL RA +GY TPIQA IP+ LTG+D+ G+A TG+GKTAAF+LP L
Sbjct: 3 SSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62
Query: 185 ERLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
+RL+ P R P +R L+L PTRELA QV I A+ T +R +V GG+ K
Sbjct: 63 QRLMRHENASASPARHP-VRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKP 121
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298
Q L+ +++VATPGR++DH+ + +V L+ + ++LDEADR+L++GF ++ ++
Sbjct: 122 QTIELKKGVEVLVATPGRLLDHI-EAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358
PK R T+LFSAT + ++ L L P+ + + ST+ + R ++ + ++
Sbjct: 181 LPKSRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQ---RFYKVTDDDKR 237
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
+ S+ + + IFS +K RL L+AA LHG+ +Q +RL+ALE F+
Sbjct: 238 YAIRSVLKERDIRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKA 297
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VD L+ TDVAARGLDI V V NY P + YVHR+GRT RAG G AVT VTD+D
Sbjct: 298 GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHD 357
>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
[Meleagris gallopavo]
Length = 482
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 222/386 (57%), Gaps = 15/386 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L
Sbjct: 63 VLSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSR 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG---FSAEIHELVRLCPKR 302
P +V+ATPGR+ DHLR+S + L L L+LDEADRLLE G F+A++ ++ P R
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362
RQT+LFSATLT+ ++EL L++ +P A A T+ E R + E ++A L+
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLV 236
Query: 363 SLCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
L +TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 237 HLI-QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFK 295
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT
Sbjct: 296 SSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 355
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSI 503
D L+ AI + KL+ V E+ +
Sbjct: 356 DIHLVHAIEEEIKLKLQEFSVEEKLV 381
>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 626
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 218/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDKSQRHGPRQP---RVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQAIAKGVDVLVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTP----PNTTVERIEQRVYRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353
Query: 475 TDNDRSLLKAI 485
++ LLK+I
Sbjct: 354 APDEEKLLKSI 364
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQA IP+ L+GRD+ G+A TG+GKTA+F+LP ++
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 186 RLLYR------PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL + P R P +R LILTPTRELA QV + + A+ T +R +V GG+ Q
Sbjct: 72 RLLPQANTSASPARHP-VRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQ 130
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
LR +I++ATPGR++DH++ + +L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 131 MAELRRGVEILIATPGRLLDHVQQK-TANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359
PK RQT+LFSAT + ++ +L L P + S ST+T+ V + E +++A
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA---EGDKQA 246
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
++ L +VI+F +K A RL + AA +HG+ +Q++R++AL+ F++
Sbjct: 247 AVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRG 306
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
++ L+ATDVAARGLDI + VIN+ P + YVHR+GRT RAG G A++ + N+R
Sbjct: 307 EIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNER 366
Query: 480 SLLKAIAK 487
L I K
Sbjct: 367 KQLADIEK 374
>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 445
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 224/378 (59%), Gaps = 10/378 (2%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E L LL+A L + +PTP+QAA IPLAL GRD+ +A TGSGKTAAF LP L R
Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L+ K IR +IL PTRELA Q +E+ +QFT ++ L+ GG K+Q LR +
Sbjct: 62 LIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKV 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ TPGR+++ L N+ ++DL + VL+LDEADR+L++GFS ++ L C R QTM
Sbjct: 122 PDILIGTPGRLLEQL-NAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180
Query: 307 LFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT + E+I L P L + ++ S +++ V++E VL L
Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITAD--HNVHKEQVLNWLL 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFG-LAAL--KAAELHGNLTQAQRLEALELFRKQHVD 422
+ K IIF+ TK A R L+G L AL KA LHG+ Q R A++ ++
Sbjct: 239 ANETYQKAIIFTNTKAMADR---LYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAK 295
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
++ATDVAARGLD+ G+ V+N+ PR YVHRVGRT RAG +G A++ + D +L+
Sbjct: 296 IMVATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLM 355
Query: 483 KAIAKRAGSKLKSRIVAE 500
++ + + R++ E
Sbjct: 356 SSVERYLKQSFERRVIKE 373
>gi|431804802|ref|YP_007231705.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430795567|gb|AGA75762.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 627
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 218/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
RL + P++ RVL+LTPTRELA QVH + A+ + + GG+
Sbjct: 62 RLFPAGHPDKSQRHGPRQP---RVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L VDL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQAIAKGVDVLVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTP----PNTTVERIEQRVYRLPA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353
Query: 475 TDNDRSLLKAI 485
++ LLK+I
Sbjct: 354 APDEEKLLKSI 364
>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|386349984|ref|YP_006048232.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|346718420|gb|AEO48435.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
Length = 393
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 228/375 (60%), Gaps = 12/375 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L+L PL RA ALGY+ TPIQA IP L GRD+ G A TG+GKTA+F LP L+R
Sbjct: 4 FASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQR 63
Query: 187 LLYRPK-RIPA-IRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETAL 243
L P+ R+P R LILTPTRELA Q+ I + + + IRC +VVGG+ Q +
Sbjct: 64 LTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMV 123
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ +I+VATPGR+ D L N +VDL + VL+LDEADR+L++GF+ + ++ + P++R
Sbjct: 124 QRGLEILVATPGRLQD-LMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKR 182
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT++FSATL +V L+ + P+R+ P+A + + + V+ + + N+ +LL
Sbjct: 183 QTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVE---QTNKRKLLLD 239
Query: 364 LCSKTF-TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + I+F+ TK A++L I +K+ +HGN +Q R AL F+ V
Sbjct: 240 LLGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVR 299
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+D+ G+ VIN+ P + SYVHR+GRTARAG G A++ + L
Sbjct: 300 ALVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYL 359
Query: 483 KAIAKRAGSKLKSRI 497
KAI K +KSRI
Sbjct: 360 KAIEK----VIKSRI 370
>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
NSW150]
Length = 421
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 228/373 (61%), Gaps = 13/373 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L PLL++ + LGY +P+ IQ IP L+G+D+ SA TG+GKTA+F LP L+
Sbjct: 2 SFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPILQ 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L +P+ R LILTPTRELA QVH I + ++ R +V GG+ Q LR
Sbjct: 62 MLSTKPRANSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
S +I+VATPGR++D L N ++ D + L+LDEADR+L++GF ++ ++ PK RQ
Sbjct: 122 SGVEILVATPGRLLD-LYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEAVL 361
++FSAT T+++ +K L +P+ + P R +T VV+I++ + N++A L
Sbjct: 181 NLMFSATFTDEIRSFVKTILNQPIEIDVTP---RNTT----VVKIKQTVHPVDKNRKAAL 233
Query: 362 LS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LS L + ++ ++FS TK A++L A + AA +HGN +Q+QR +AL F+
Sbjct: 234 LSHLIHRNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGE 293
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATD+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V+ ++ +
Sbjct: 294 LHILVATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVN 353
Query: 481 LLKAIAKRAGSKL 493
L++I K KL
Sbjct: 354 QLQSIEKLIQHKL 366
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 223/375 (59%), Gaps = 7/375 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS +L+A GY P+PIQA IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL + + PA +R L+LTPTRELA QV +E + ++ ++ GG+ Q + L
Sbjct: 62 -LLSKGNKAPAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L N +V+ L VL+LDEADR+L++GF +I +++ + P +R
Sbjct: 121 SRGVDILVATPGRLLD-LYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++D+ +L K + P+ +S P +T+ + + + + ++ +VL+
Sbjct: 180 QNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKA---SVLVK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++FS TK A+RL + AA +HGN +Q R +AL F+ V
Sbjct: 237 LIKQHDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+D + LL+
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLR 356
Query: 484 AIAKRAGSKLKSRIV 498
I L+ R++
Sbjct: 357 DIELLIKQNLERRVI 371
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 219/375 (58%), Gaps = 7/375 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS ++A E GY+KP+PIQ IP L G+D+ SA TG+GKTA F LP L+
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 186 RL--LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L PK P IR L+LTPTRELA QVH + + +++ +I+ +V GG+ Q L
Sbjct: 62 YLSETKHPKYRP-IRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
+ DI+VATPGR++D L + +V + V ILDEADR+L++GF +I++++ P +R
Sbjct: 121 KRGVDILVATPGRLLD-LHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKR 179
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
Q ++FSAT ++++ +L L P+ + P ++ +V +I + ++ +
Sbjct: 180 QNLMFSATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTE---FTIK 236
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L ++V+IF+ TK A+RL + + AA +HGN +Q R +AL+ F+ +
Sbjct: 237 LIKDNNWNQVLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKV 296
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARGLDI + VINY P YVHR+GRT RAG +G A++ V + K
Sbjct: 297 LVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQK 356
Query: 484 AIAKRAGSKLKSRIV 498
I K KL S +V
Sbjct: 357 EIEKLLNEKLTSIVV 371
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 215/369 (58%), Gaps = 8/369 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++ +L L L + C L + +PT IQ IPL L G+D+ G A TGSGKTAAFALP L+
Sbjct: 19 TWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQ 78
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R A LILTPTRELA Q+ + + ++ ++VGG+ Q L
Sbjct: 79 ALLENPQRYFA---LILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEK 135
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR++DHL N+ +L L L++DEADR+L + F E+ +++R+ P+ R+T
Sbjct: 136 KPHIIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRT 195
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI-RRMREVNQEAVLLSL 364
+LFSAT+T+ V +L + SL P+++ + L + + I + ++V +L L
Sbjct: 196 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEL 255
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+F +IF GT R +L A LHG +TQ +R+ AL F+ ++ L
Sbjct: 256 AGNSF----MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSIL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
I+TDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371
Query: 485 IAKRAGSKL 493
I + +L
Sbjct: 372 IEQLISKQL 380
>gi|395499060|ref|ZP_10430639.1| putative ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 443
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 219/363 (60%), Gaps = 8/363 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L PLLRA E LGY PTP+QA IP L GRD+ +A TG+GKTA FA+P L+
Sbjct: 2 TFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQ 61
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L ++ A +R LIL PTRELA QVH+ + + AQ + V GG+S Q L
Sbjct: 62 LLTMEGPKVSANSVRALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMKL 121
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR+ID R + ++ L+ L L+LDEADR+L+LGFS E+ + R+ PK+R
Sbjct: 122 RKGVDVLVATPGRLIDLFRQN-ALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+LFSAT ++++ +L L PL + P +T+ + VV + + R+ + +
Sbjct: 181 QTLLFSATFSDEIRQLAGQMLNDPLTVEVSPRNVAANTVKQWVVPVDKKRKAE---LFVH 237
Query: 364 LCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K +V++F+ T+ L + L GL + A +HG+ QA R AL+ F+ V
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVEKLQGLG-INADGIHGDKPQATRQRALDRFKSSDVQ 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLDI + V+N+ P Y+HR+GRT RAG G A++ V ++ ++L
Sbjct: 297 ILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNML 356
Query: 483 KAI 485
AI
Sbjct: 357 SAI 359
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 221/373 (59%), Gaps = 9/373 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L L++A + LGYSKPTPIQA IP L G+D+CG A TG+GKTAAFALP++
Sbjct: 7 SFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSIH 66
Query: 186 RLLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L P+ P R+LIL+PTRELA Q+ + + V GG+ Q L
Sbjct: 67 YLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRML 126
Query: 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303
DI+VATPGR++D L + ++ L D+ V +LDEAD++L+LGF + + +L PK R
Sbjct: 127 DRGTDILVATPGRLLD-LIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNR 185
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363
QT+ FSAT+ + + EL L+ P+ +S P S+ E V + +++ LL+
Sbjct: 186 QTLFFSATMPKTIQELSSQFLSDPVTVSVAPQ----SSTAERVEQFGIFVNQSEKQALLT 241
Query: 364 LCSKTFTS--KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ K + ++F+ TK A R+ A L AA +HGN +Q QR AL FR +
Sbjct: 242 ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRL 301
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+D+ GV V NY P YVHR+GRTARAGR+G A++F+ +++RS
Sbjct: 302 KILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSY 361
Query: 482 LKAIAKRAGSKLK 494
L++I + KL+
Sbjct: 362 LRSIERLTRVKLQ 374
>gi|358639136|dbj|BAL26433.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 517
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 219/365 (60%), Gaps = 11/365 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L L+ PLLRA GY++PTPIQA IPL L G D+ +A TG+GKTA F LP L
Sbjct: 7 SFASLGLAEPLLRAISESGYTRPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPLLH 66
Query: 186 RLLYRPKRIPAI---RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L +P +P R LILTPTRELA QV ++ + + ++ GG++ Q A
Sbjct: 67 LLSAKPAAVPKAGRPRCLILTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINPQIAA 126
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302
L+ DI+VATPGR++DH +VDL + +L+LDEADR+L++GF +I +++ + PK+
Sbjct: 127 LKKRVDILVATPGRLLDHA-GQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLAMLPKQ 185
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST--LTEEVVRIRRMREVNQEAV 360
RQ +LFSAT ++++ L L P + A+R +T L E+ V + + + +
Sbjct: 186 RQNLLFSATFSDEIRSLANGLLNNPGCVEV---ARRNTTTELVEQSVYF--VPQKQKRDL 240
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
L+ L + +V++F+ TK A+RL G + AA +HGN +Q+ R +AL F+
Sbjct: 241 LVHLVKEHDWHQVLVFTRTKHGANRLAEYLGKHGIPAAAIHGNKSQSARTKALSQFKDNS 300
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G A++FV ++S
Sbjct: 301 LPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGKAISFVDSEEKS 360
Query: 481 LLKAI 485
L +I
Sbjct: 361 YLTSI 365
>gi|391232915|ref|ZP_10269121.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391222576|gb|EIQ00997.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 450
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 217/378 (57%), Gaps = 28/378 (7%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L L+R +A+GY+ PTP+Q IP+ L+ RD+ SA TG+GKTAAFALP L
Sbjct: 3 FSRLGLPANLVRGVQAMGYTDPTPVQLRAIPVVLSKRDLIASAQTGTGKTAAFALPVLAG 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P RVL+L PTREL QV + +FTDIR ++ GG+ Q + LR+
Sbjct: 63 LGAHKAAGP--RVLVLEPTRELGAQVETAFRDFGRFTDIRSTIIHGGVGYGKQRSDLRAG 120
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
DIV+AT GR++D LR ++ LD L VLILDE DR+L++GF ++ +V LCPK+RQT+
Sbjct: 121 TDIVIATVGRLMDFLREK-TLTLDHLEVLILDEVDRMLDMGFVNDVKRIVALCPKKRQTL 179
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV------ 360
FSAT+ +++E+ + +L P R+ E+ R R + E+ + A+
Sbjct: 180 FFSATIPPEIEEVARFALQNPERI--------------EIGRARTVNELVKHAIYPVAFE 225
Query: 361 -----LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
L +L +T VIIFS TK A R+ A LH N +Q QR+EAL+
Sbjct: 226 QKFDLLRALLDRTDYESVIIFSRTKHGADRIARKLKANKHSVAVLHANRSQNQRVEALDG 285
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+K + ++ATD+AARG+D+ GV VINY P + YVHR+GRT RA G A T
Sbjct: 286 FKKGRYEVMVATDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLAT 345
Query: 476 DNDRSLLKAIAKRAGSKL 493
+ ++ I + G+K+
Sbjct: 346 PEEAGDVRDIERFIGTKI 363
>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 496
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 216/364 (59%), Gaps = 8/364 (2%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS PLLRA +A GY+ PTPIQ IP ALTG+D+ G A TG+GKTAAFALP L
Sbjct: 2 TFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILH 61
Query: 186 RLLYRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
RL PA IRVL+LTPTRELA Q+ + +FT + ++ GG+ QE
Sbjct: 62 RLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQ 121
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301
LR D+++ATPGR++D + + V L V +LDEADR+L++GF ++ ++ P
Sbjct: 122 TLRRGVDVLIATPGRLLDLMGQGL-VSYKALEVFVLDEADRMLDMGFIHDVKRIISALPP 180
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361
+RQT+ FSAT+ ++ L + L P+R+ P + T+ +++ + R ++ + +L
Sbjct: 181 KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRH---LL 237
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ L + ++F+ TK A+R+ + + A +HGN +Q R AL F+
Sbjct: 238 VHLLGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSC 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI G+ VIN+ P SYVHR+GRT RAG G A++F +R+
Sbjct: 298 RVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAY 357
Query: 482 LKAI 485
L+ I
Sbjct: 358 LRDI 361
>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 483
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/416 (37%), Positives = 226/416 (54%), Gaps = 25/416 (6%)
Query: 82 DNDHSDSEFD-QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRAC 140
D+D + SE D Q D + E ++D +N + SF +LN+ +L++
Sbjct: 64 DSDSNQSEQDDQFVDQENEQKEDDTNENEQN-----------EITSFSQLNICEEVLQSI 112
Query: 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200
+ LG+ KPT IQ +PL RDI G + TGSGKTA F +P L+ L Y+ + A L
Sbjct: 113 KELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIPILQELKYKKQSFFA---L 169
Query: 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
I++PTREL +Q+ + + I C + GG+ Q L P+I+++TPGR++DH
Sbjct: 170 IISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKKPNIIISTPGRILDH 229
Query: 261 LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320
L N+ +L +L L+ DEAD+LL L F + I++L+ + P R T LFSAT+T+ V +L
Sbjct: 230 LNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPNNRITFLFSATMTKSVAKLK 289
Query: 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK 380
K SL P+++ TL E + + + L SLC +IIF+ T
Sbjct: 290 KASLKNPIKIEVSNKYSTVKTLIETYIFLPLKYKY---TYLCSLCFYFTNKNIIIFTNTC 346
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
A +L LK+ LHG LTQ QRL +L LF+ + LI+T V ARGLD+ ++
Sbjct: 347 ATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILISTQVGARGLDLQNIK 406
Query: 441 TVINYACPRDLTS---YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
VIN+ DL S Y+HRVGRTARAG+ G ++TFVT D I K+ K+
Sbjct: 407 IVINF----DLCSCKEYIHRVGRTARAGKTGKSITFVTQYDVEAFLTIEKQLNKKI 458
>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS), partial [Ostreococcus tauri]
Length = 382
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 211/360 (58%), Gaps = 6/360 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L + L+ ACE LG+ +P+ IQ IP AL GRD+ G A TGSGKT AFALP L+
Sbjct: 20 TFASLGLCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQ 79
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ LIL+PTRELA+Q+ +E + + +R +VGG+ Q L
Sbjct: 80 SLLDEPR---TYHSLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGK 136
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P +VV TPGR++DHL N+ L L VL+LDEADRLL L F EI +++R+ P+ R+T
Sbjct: 137 RPHVVVGTPGRVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRT 196
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
LFSAT+T V +L + L P+++ +L + + I +++ L
Sbjct: 197 QLFSATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAK---HKDCYATYLF 253
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ S +I+F+ T +L ++ A +HG ++Q +R+ AL+ F+ + LI
Sbjct: 254 NELSASTLIVFARTCDQTRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKAGERNILI 313
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V VINY P++ YVHRVGRTARAGR G AVT VT D L + I
Sbjct: 314 ATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKI 373
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 216/371 (58%), Gaps = 7/371 (1%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F ELNLS L++ +G+ + TPIQA IP+ L+G D+ G A TG+GKTAAF +PT+E
Sbjct: 3 TFRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
R+ + + I A L+L PTRELA+QV + +I + + V GG Q ALR
Sbjct: 63 RIDAKSRHIQA---LVLAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
P IVVATPGR++DH+ N +++LD + +ILDEAD +L +GF +I +++ P+ RQT
Sbjct: 120 NPQIVVATPGRLMDHM-NRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPESRQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT+ + + ++ +T P + + + + ++ ++ + VL L
Sbjct: 179 LLFSATMPQQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKENQKFD---VLCRLI 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
IIF TK+ + A LHG+LTQA+R + + F+K +D L+
Sbjct: 236 DTDSPELSIIFGRTKKRVDEMTEGLVQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TFVT + +K I
Sbjct: 296 ATDVAARGLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTI 355
Query: 486 AKRAGSKLKSR 496
+ K+ R
Sbjct: 356 ERVTNKKMSRR 366
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 223/376 (59%), Gaps = 15/376 (3%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS+P+L+A + GYS PTPIQ IP L GRD+ G A TG+GKTAAF LP+++R
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L RIP + R+L+L PTREL Q+ + + ++ +VGG S L
Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++ATPGR++D L + + +L + VL+LDEAD++L+LGF + + +L PK RQ
Sbjct: 124 RGTDILIATPGRLLD-LIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
T+ FSAT+ + + EL+ P+++S P ST E + + M + +++ LL L
Sbjct: 183 TLFFSATMPKAIKELVSGYCNNPVQVSVTPE----STTAERIDQYLFMVQQDEKQSLLEL 238
Query: 365 -------CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
F +++IF+ TK A R+ A + A +HGN +Q QR AL+ FR
Sbjct: 239 ILSGRHKVPGEF-ERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFR 297
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+ L+ATDVAARG+DI GV V+NY P YVHR+GRTARAG++G A+ F ++
Sbjct: 298 RGKTMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAED 357
Query: 478 DRSLLKAIAKRAGSKL 493
+R+ LK I K G++L
Sbjct: 358 ERAYLKDIRKTTGAEL 373
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 231/375 (61%), Gaps = 20/375 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L +LRA GY+KPTPIQA IP+ L G+D+ G+A TG+GKTA FALP ++
Sbjct: 74 TFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 133
Query: 186 RLL------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
RLL P R P +R L+LTPTRELA QV+ + + A+ TD+R +V GG+ Q
Sbjct: 134 RLLPLANASASPARHP-VRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQ 192
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299
ALR +I+VATPGR++DH++ SV+L + +L+LDEADR+L++GF ++ ++ L
Sbjct: 193 TDALRRGVEILVATPGRLLDHVQQK-SVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 251
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR--IRRMREVNQ 357
P +RQT+LFSAT + ++ +L L +P+ + A+ S T E VR + ++++ ++
Sbjct: 252 PAQRQTLLFSATFSPEIKKLASSYLKQPVTIEV---AR--SNSTNENVRQVVYQVQDGHK 306
Query: 358 EAVLLSL----CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+A ++ L ++ + + I+F +K RL + AA +HG+ TQ +R++ L
Sbjct: 307 QAAVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTL 366
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT- 472
+ F+ +D L+ATDVAARGLDI + VIN+ P YVHR+GRT RAG G A++
Sbjct: 367 DGFKNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSI 426
Query: 473 FVTDNDRSLLKAIAK 487
FV ND LL I K
Sbjct: 427 FVPGNDDRLLADIEK 441
>gi|339495975|ref|YP_004716268.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338803347|gb|AEJ07179.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 605
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 217/371 (58%), Gaps = 19/371 (5%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLE 61
Query: 186 RLL----------YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235
L Y PK+ RVL+LTPTRELA QVH + A+ ++ + GG+
Sbjct: 62 LLFPGGHPDREHRYGPKQP---RVLVLTPTRELAAQVHDSFKVYARDLPLKSTCIFGGVG 118
Query: 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHEL 295
Q A+ D++VA PGR++D L N ++DL + +L+LDEADR+L++GF ++ ++
Sbjct: 119 MNPQIQAVAKGLDVLVACPGRLLD-LANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKV 177
Query: 296 VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV-VRIRRMRE 354
+ P +RQ +LFSAT ++D+ +L L P R+ P P+T E + R+ R+
Sbjct: 178 LAKLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTP----PNTTVERIEQRMFRIAA 233
Query: 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
++ A+L L ++ +V++F+ TK A+RL L AA +HGN +Q R +AL
Sbjct: 234 SHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALA 293
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 294 DFKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353
Query: 475 TDNDRSLLKAI 485
++ LLK I
Sbjct: 354 APDEEKLLKGI 364
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L +S P+LRA +G+ +PTPIQ IP+A++G+D+ G A TG+GKTAAF LP LER
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ + + +V+IL+PTRELA+QV + K+AQ+T+I + GG Q AL+
Sbjct: 65 VDGNERHV---QVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121
Query: 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306
P I+VATPGR++DH+ + S+ D + V++LDEAD +L +GF +I++++ P+ QT+
Sbjct: 122 PQIIVATPGRLMDHM-DRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL 180
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366
LFSAT+ + + +L + LT+P + P+ + + + ++ ++ + VL L
Sbjct: 181 LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFD---VLCRLFD 237
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
IIF+ TK+ + A +HG+L+Q +R + FR+ +D L+A
Sbjct: 238 IQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVA 297
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI GV V NY P+D SY HRVGRT RAG+ G A TFV + L AI
Sbjct: 298 TDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIE 357
Query: 487 KRAGSKLKSR 496
+ K+ R
Sbjct: 358 RLTKRKISRR 367
>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase [Ferrimonas balearica DSM 9799]
gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
9799]
Length = 499
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 218/362 (60%), Gaps = 5/362 (1%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS L RA GY +P+PIQA IP L G+D+ +A TG+GKTA F LP L+
Sbjct: 3 FASLGLSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPMLQN 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L + R +R L+LTPTRELA QV ++ Q +R +V GG+S Q ALR
Sbjct: 63 LSRGTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQALRR 122
Query: 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305
D++VATPGR++D L + +V +DL +L+LDEADR+L++GF +I +++ L PKRRQ
Sbjct: 123 GADVLVATPGRLLD-LFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQN 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365
+LFSAT + ++ EL + L +P+ + P R ST V R+ + + + A++ L
Sbjct: 182 LLFSATFSGEIRELARGLLNQPVEVDVSP---RNSTARTVVQRLHPVDKGRKPALISKLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V+IF+ TK A+RL ++AA +HGN +Q R AL F+ V L+
Sbjct: 239 REHNWHQVLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQALV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI + V+N+ P+ YVHR+GRT RAG EG A++ V + LL+AI
Sbjct: 299 ATDIAARGLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVCAEEFKLLQAI 358
Query: 486 AK 487
K
Sbjct: 359 EK 360
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/388 (38%), Positives = 221/388 (56%), Gaps = 14/388 (3%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LS PLL+A GY P+PIQA+ IP L GRD+ G A TG+GKTAAFALP L+
Sbjct: 2 TFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 186 RL-LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
RL P+R A+R LILTPTRELA+Q+ + ++ +R ++ GG+ Q A+R
Sbjct: 62 RLSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304
DI++A PGR+ D L +DL +L V +LDEADR+L++GF ++ +++ P +RQ
Sbjct: 122 KGVDILIACPGRLND-LIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364
++FSAT+ +++++L L P + DP S+ E + + E + +LL
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPV----SSTVERIDQSLYFVEKGNKKLLLPW 236
Query: 365 CSKTFTSKV---IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
K T V ++FS TK A ++ + AA +HGN +Q R+ ALE F++
Sbjct: 237 LIKNLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKT 296
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ATD+AARG+DI + V NY P +YVHR+GRTARAG +G AV+F +
Sbjct: 297 RVLVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEY 356
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
L I KL R + S W +
Sbjct: 357 LAGI-----EKLNRRKIPVVSGHPWDGV 379
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,098,501,462
Number of Sequences: 23463169
Number of extensions: 368468032
Number of successful extensions: 2292745
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31314
Number of HSP's successfully gapped in prelim test: 15398
Number of HSP's that attempted gapping in prelim test: 2088385
Number of HSP's gapped (non-prelim): 107609
length of query: 643
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 494
effective length of database: 8,863,183,186
effective search space: 4378412493884
effective search space used: 4378412493884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)